Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56124.t1 | XP_003621757.1 | 99.3 | 451 | 3 | 0 | 1 | 451 | 1 | 451 | 8.10E-256 | 892.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56124.t1 | Q8LJW3 | 57.4 | 453 | 180 | 6 | 7 | 451 | 4 | 451 | 3.3e-141 | 503.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56124.t1 | G7KUS8 | 99.3 | 451 | 3 | 0 | 1 | 451 | 1 | 451 | 5.9e-256 | 892.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049293 | MS.gene56124 | -0.811083 | 8.36E-51 | -1.69E-46 |
| MS.gene049378 | MS.gene56124 | 0.817197 | 3.74E-52 | -1.69E-46 |
| MS.gene049669 | MS.gene56124 | 0.804785 | 1.83E-49 | -1.69E-46 |
| MS.gene050226 | MS.gene56124 | 0.808588 | 2.88E-50 | -1.69E-46 |
| MS.gene050227 | MS.gene56124 | 0.813421 | 2.58E-51 | -1.69E-46 |
| MS.gene050228 | MS.gene56124 | 0.814427 | 1.55E-51 | -1.69E-46 |
| MS.gene050623 | MS.gene56124 | -0.803816 | 2.91E-49 | -1.69E-46 |
| MS.gene052176 | MS.gene56124 | 0.801488 | 8.79E-49 | -1.69E-46 |
| MS.gene052302 | MS.gene56124 | 0.825698 | 4.07E-54 | -1.69E-46 |
| MS.gene052376 | MS.gene56124 | 0.83976 | 1.31E-57 | -1.69E-46 |
| MS.gene052586 | MS.gene56124 | 0.805075 | 1.59E-49 | -1.69E-46 |
| MS.gene054468 | MS.gene56124 | 0.812595 | 3.92E-51 | -1.69E-46 |
| MS.gene054930 | MS.gene56124 | 0.800387 | 1.48E-48 | -1.69E-46 |
| MS.gene055701 | MS.gene56124 | 0.803319 | 3.69E-49 | -1.69E-46 |
| MS.gene05604 | MS.gene56124 | 0.808 | 3.84E-50 | -1.69E-46 |
| MS.gene058435 | MS.gene56124 | 0.823957 | 1.05E-53 | -1.69E-46 |
| MS.gene058548 | MS.gene56124 | 0.807754 | 4.33E-50 | -1.69E-46 |
| MS.gene060879 | MS.gene56124 | 0.827931 | 1.19E-54 | -1.69E-46 |
| MS.gene060998 | MS.gene56124 | 0.819113 | 1.38E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56124.t1 | MTR_7g022470 | 99.335 | 451 | 3 | 0 | 1 | 451 | 1 | 451 | 0.0 | 922 |
| MS.gene56124.t1 | MTR_5g047260 | 58.758 | 451 | 173 | 6 | 4 | 451 | 11 | 451 | 2.53e-180 | 511 |
| MS.gene56124.t1 | MTR_7g028050 | 56.250 | 448 | 184 | 5 | 10 | 451 | 1 | 442 | 1.85e-175 | 499 |
| MS.gene56124.t1 | MTR_3g088885 | 55.012 | 409 | 172 | 5 | 10 | 409 | 9 | 414 | 3.81e-157 | 452 |
| MS.gene56124.t1 | MTR_5g011580 | 51.794 | 446 | 197 | 5 | 12 | 451 | 8 | 441 | 1.78e-153 | 443 |
| MS.gene56124.t1 | MTR_4g101950 | 50.998 | 451 | 193 | 5 | 12 | 451 | 8 | 441 | 8.44e-153 | 441 |
| MS.gene56124.t1 | MTR_1g029520 | 51.852 | 432 | 189 | 8 | 26 | 441 | 254 | 682 | 1.09e-143 | 426 |
| MS.gene56124.t1 | MTR_5g047260 | 57.465 | 355 | 146 | 3 | 4 | 358 | 11 | 360 | 6.24e-141 | 408 |
| MS.gene56124.t1 | MTR_7g028050 | 56.232 | 345 | 139 | 5 | 113 | 451 | 1 | 339 | 3.02e-130 | 380 |
| MS.gene56124.t1 | MTR_5g015170 | 43.662 | 426 | 217 | 6 | 10 | 413 | 9 | 433 | 1.22e-120 | 360 |
| MS.gene56124.t1 | MTR_5g047260 | 57.426 | 303 | 125 | 2 | 4 | 306 | 11 | 309 | 7.84e-119 | 350 |
| MS.gene56124.t1 | MTR_4g097380 | 38.661 | 463 | 261 | 5 | 10 | 449 | 28 | 490 | 2.25e-103 | 317 |
| MS.gene56124.t1 | MTR_1g012740 | 30.769 | 169 | 99 | 4 | 226 | 393 | 17 | 168 | 2.13e-20 | 88.6 |
| MS.gene56124.t1 | MTR_7g102330 | 22.905 | 358 | 240 | 11 | 36 | 371 | 20 | 363 | 6.32e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56124.t1 | AT1G69040 | 57.395 | 453 | 180 | 6 | 7 | 451 | 8 | 455 | 0.0 | 519 |
| MS.gene56124.t1 | AT1G69040 | 57.395 | 453 | 180 | 6 | 7 | 451 | 4 | 451 | 0.0 | 519 |
| MS.gene56124.t1 | AT3G01990 | 58.040 | 398 | 161 | 4 | 11 | 407 | 17 | 409 | 7.47e-164 | 469 |
| MS.gene56124.t1 | AT3G01990 | 58.040 | 398 | 161 | 4 | 11 | 407 | 17 | 409 | 7.47e-164 | 469 |
| MS.gene56124.t1 | AT3G01990 | 58.040 | 398 | 161 | 4 | 11 | 407 | 3 | 395 | 9.37e-164 | 469 |
| MS.gene56124.t1 | AT3G01990 | 58.040 | 398 | 161 | 4 | 11 | 407 | 3 | 395 | 9.37e-164 | 469 |
| MS.gene56124.t1 | AT3G01990 | 58.040 | 398 | 161 | 4 | 11 | 407 | 17 | 409 | 1.19e-163 | 469 |
| MS.gene56124.t1 | AT3G01990 | 58.040 | 398 | 161 | 4 | 11 | 407 | 3 | 395 | 1.74e-163 | 468 |
| MS.gene56124.t1 | AT2G03730 | 53.846 | 455 | 192 | 7 | 7 | 449 | 8 | 456 | 5.73e-161 | 462 |
| MS.gene56124.t1 | AT2G03730 | 53.846 | 455 | 192 | 7 | 7 | 449 | 8 | 456 | 5.73e-161 | 462 |
| MS.gene56124.t1 | AT1G76990 | 55.501 | 409 | 169 | 4 | 10 | 409 | 9 | 413 | 2.46e-160 | 461 |
| MS.gene56124.t1 | AT1G76990 | 55.501 | 409 | 169 | 4 | 10 | 409 | 9 | 413 | 2.46e-160 | 461 |
| MS.gene56124.t1 | AT1G76990 | 55.501 | 409 | 169 | 4 | 10 | 409 | 9 | 413 | 2.46e-160 | 461 |
| MS.gene56124.t1 | AT1G76990 | 55.501 | 409 | 169 | 4 | 10 | 409 | 9 | 413 | 2.46e-160 | 461 |
| MS.gene56124.t1 | AT1G76990 | 55.501 | 409 | 169 | 4 | 10 | 409 | 9 | 413 | 2.46e-160 | 461 |
| MS.gene56124.t1 | AT1G12420 | 50.667 | 450 | 196 | 8 | 12 | 451 | 8 | 441 | 2.44e-142 | 414 |
| MS.gene56124.t1 | AT5G25320 | 43.763 | 489 | 220 | 11 | 10 | 444 | 9 | 496 | 3.22e-138 | 406 |
| MS.gene56124.t1 | AT4G22780 | 47.174 | 460 | 201 | 11 | 12 | 449 | 8 | 447 | 1.51e-134 | 395 |
| MS.gene56124.t1 | AT4G22780 | 30.409 | 171 | 104 | 2 | 10 | 178 | 218 | 375 | 2.69e-11 | 65.9 |
| MS.gene56124.t1 | AT4G22780 | 47.174 | 460 | 201 | 11 | 12 | 449 | 8 | 447 | 1.51e-134 | 395 |
| MS.gene56124.t1 | AT4G22780 | 30.409 | 171 | 104 | 2 | 10 | 178 | 218 | 375 | 2.69e-11 | 65.9 |
| MS.gene56124.t1 | AT5G25320 | 44.105 | 458 | 203 | 9 | 39 | 444 | 1 | 457 | 7.12e-134 | 394 |
| MS.gene56124.t1 | AT3G01990 | 57.057 | 333 | 137 | 4 | 11 | 342 | 17 | 344 | 1.63e-128 | 376 |
| MS.gene56124.t1 | AT3G01990 | 57.057 | 333 | 137 | 4 | 11 | 342 | 3 | 330 | 1.78e-128 | 375 |
| MS.gene56124.t1 | AT3G01990 | 57.622 | 328 | 133 | 4 | 11 | 337 | 17 | 339 | 3.11e-128 | 375 |
| MS.gene56124.t1 | AT5G65890 | 45.863 | 423 | 204 | 9 | 10 | 409 | 10 | 430 | 3.19e-121 | 362 |
| MS.gene56124.t1 | AT5G65890 | 45.863 | 423 | 204 | 9 | 10 | 409 | 10 | 430 | 3.19e-121 | 362 |
| MS.gene56124.t1 | AT1G12420 | 49.091 | 385 | 170 | 8 | 77 | 451 | 1 | 369 | 1.47e-110 | 331 |
| MS.gene56124.t1 | AT3G01990 | 54.762 | 294 | 125 | 3 | 11 | 302 | 17 | 304 | 3.39e-106 | 318 |
| MS.gene56124.t1 | AT3G01990 | 54.762 | 294 | 125 | 3 | 11 | 302 | 3 | 290 | 6.02e-106 | 317 |
| MS.gene56124.t1 | AT5G25320 | 43.169 | 366 | 169 | 8 | 10 | 337 | 9 | 373 | 4.26e-102 | 309 |
| MS.gene56124.t1 | AT5G65890 | 43.684 | 380 | 189 | 9 | 53 | 409 | 1 | 378 | 5.27e-102 | 311 |
| MS.gene56124.t1 | AT5G65890 | 43.684 | 380 | 189 | 9 | 53 | 409 | 1 | 378 | 5.27e-102 | 311 |
| MS.gene56124.t1 | AT5G65890 | 43.791 | 306 | 154 | 6 | 120 | 409 | 13 | 316 | 2.82e-83 | 261 |
| MS.gene56124.t1 | AT2G39570 | 23.229 | 353 | 246 | 11 | 37 | 371 | 21 | 366 | 2.51e-11 | 65.9 |
Find 86 sgRNAs with CRISPR-Local
Find 164 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCTGATGGTGGATGGTTTA+TGG | 0.205537 | 7.4:-79486187 | MS.gene56124:CDS |
| TTTCATGTTACTGATCAAAA+TGG | 0.211096 | 7.4:-79486017 | MS.gene56124:CDS |
| TTCACTCTTAACTGGATTTC+CGG | 0.229487 | 7.4:+79483691 | None:intergenic |
| TCAATTGTTTCACTCTTAAC+TGG | 0.271268 | 7.4:+79483683 | None:intergenic |
| GGTGTAAAGCTCGAACTTTC+CGG | 0.271281 | 7.4:-79483842 | MS.gene56124:CDS |
| CAGAACAACAACTTTGATAA+AGG | 0.291767 | 7.4:-79486397 | MS.gene56124:intron |
| CCGCTACCACATTGCATTTG+AGG | 0.353645 | 7.4:+79485234 | None:intergenic |
| GTTGATGATTGCATCGATAA+AGG | 0.360000 | 7.4:-79484924 | MS.gene56124:CDS |
| GAGAGGTTTCTTTACAATCT+AGG | 0.372115 | 7.4:-79483542 | MS.gene56124:CDS |
| AATAGTAACTTCGGTCGATC+TGG | 0.375903 | 7.4:+79484876 | None:intergenic |
| CATACAACGATCGAGTTAAC+AGG | 0.410366 | 7.4:-79485305 | MS.gene56124:CDS |
| TGAAGGAACAGAAGCATATC+AGG | 0.414309 | 7.4:-79484793 | MS.gene56124:intron |
| AAGACTTCTGAAAGCAATCC+TGG | 0.415942 | 7.4:+79485272 | None:intergenic |
| CTTTCTGCTTCAGAACTGAT+TGG | 0.421013 | 7.4:+79484227 | None:intergenic |
| TCGAGTTAACAGGACGAGAT+AGG | 0.422142 | 7.4:-79485295 | MS.gene56124:CDS |
| ATGTGGTAGCGGCTGAAGTC+TGG | 0.426365 | 7.4:-79485223 | MS.gene56124:CDS |
| TCTCTTTACGTGATCTCGTT+AGG | 0.427447 | 7.4:-79483574 | MS.gene56124:CDS |
| CATAGAAAACATTCATGGCT+TGG | 0.432509 | 7.4:+79483726 | None:intergenic |
| TTCATGTTACTGATCAAAAT+GGG | 0.434204 | 7.4:-79486016 | MS.gene56124:CDS |
| TACATCACCGACGACACAAC+AGG | 0.443441 | 7.4:-79485170 | MS.gene56124:CDS |
| TTAATCTTGGCAAGGCGGTC+AGG | 0.450576 | 7.4:+79485131 | None:intergenic |
| GATCGGAAGCTACGGACTCT+TGG | 0.452011 | 7.4:+79485365 | None:intergenic |
| TGTCACATAGAAAACATTCA+TGG | 0.454766 | 7.4:+79483721 | None:intergenic |
| TGTAGCTGATAGAATTCAAC+AGG | 0.458713 | 7.4:-79485973 | MS.gene56124:intron |
| TCAATTGATGTATGCTGATC+GGG | 0.471630 | 7.4:-79485012 | MS.gene56124:CDS |
| CGGGATTATGACATATATGA+TGG | 0.473270 | 7.4:-79484993 | MS.gene56124:CDS |
| AAGCAGAAGATGCTTAATCT+TGG | 0.477322 | 7.4:+79485118 | None:intergenic |
| ATATTTCATCTGATGGTGGA+TGG | 0.481369 | 7.4:-79486194 | MS.gene56124:CDS |
| TAATAAACGTGGTAGTTTGT+TGG | 0.488332 | 7.4:-79486265 | MS.gene56124:CDS |
| ATAGAAAACATTCATGGCTT+GGG | 0.492504 | 7.4:+79483727 | None:intergenic |
| GCAAAGAGTAATTCACTGCT+TGG | 0.493494 | 7.4:-79484204 | MS.gene56124:CDS |
| ACATGTTATTGTTACCTTGG+TGG | 0.506079 | 7.4:+79486528 | None:intergenic |
| GTACCTCAGAAGTTCGCCTT+CGG | 0.506198 | 7.4:+79484171 | None:intergenic |
| ACTCGCATCTTTAGAGAAAA+CGG | 0.512341 | 7.4:-79483788 | MS.gene56124:CDS |
| AGAGCTTATATTTCATCTGA+TGG | 0.514352 | 7.4:-79486201 | MS.gene56124:CDS |
| TTTGTTCGACTCACAAGGAT+AGG | 0.516487 | 7.4:-79485043 | MS.gene56124:CDS |
| AGGCTGTTCGAAAAGAGATC+GGG | 0.523994 | 7.4:-79483661 | MS.gene56124:CDS |
| GAGGCTGTTCGAAAAGAGAT+CGG | 0.525177 | 7.4:-79483662 | MS.gene56124:CDS |
| GATATACCGTCGTGAATTTG+AGG | 0.531940 | 7.4:-79484902 | MS.gene56124:CDS |
| GCTTGGAGGCTGCTGTCCGA+AGG | 0.534469 | 7.4:-79484187 | MS.gene56124:CDS |
| CGGCAATCCTGTTGTGTCGT+CGG | 0.534641 | 7.4:+79485163 | None:intergenic |
| TGCGAGTTACATCAGACAAA+AGG | 0.535705 | 7.4:+79483804 | None:intergenic |
| TTCTCACGGATCGGAAGCTA+CGG | 0.542549 | 7.4:+79485357 | None:intergenic |
| CTTCAGCATTGACAGTTCCA+TGG | 0.546213 | 7.4:+79484811 | None:intergenic |
| AAGAGTAATTCACTGCTTGG+AGG | 0.549558 | 7.4:-79484201 | MS.gene56124:CDS |
| CGCGCTGAGGTCACGACAAG+AGG | 0.553071 | 7.4:-79483752 | MS.gene56124:CDS |
| CCTCAAATGCAATGTGGTAG+CGG | 0.554458 | 7.4:-79485234 | MS.gene56124:CDS |
| CAATCAGTTCTGAAGCAGAA+AGG | 0.556036 | 7.4:-79484226 | MS.gene56124:CDS |
| TTCTATGTGACAGATGTGTC+CGG | 0.558668 | 7.4:-79483710 | MS.gene56124:CDS |
| CATGCTTAAAATCTCCTACC+CGG | 0.562239 | 7.4:-79483610 | MS.gene56124:CDS |
| CTGGACACACAATTCAAGAA+TGG | 0.562636 | 7.4:-79485204 | MS.gene56124:CDS |
| TTTCAAATTCATCATCAAGA+GGG | 0.563709 | 7.4:+79486571 | None:intergenic |
| ATGCTTAAAATCTCCTACCC+GGG | 0.565650 | 7.4:-79483609 | MS.gene56124:CDS |
| CCTCAGCGCGGCAGACTGAA+AGG | 0.576827 | 7.4:+79483765 | None:intergenic |
| AAGGCCAACTCTGTCTTCAC+CGG | 0.577698 | 7.4:+79483823 | None:intergenic |
| GTTCGACTCACAAGGATAGG+AGG | 0.577855 | 7.4:-79485040 | MS.gene56124:CDS |
| AAATCTCCTACCCGGGAGAG+TGG | 0.578530 | 7.4:-79483602 | MS.gene56124:CDS |
| TGTCCGAAGGCGAACTTCTG+AGG | 0.586828 | 7.4:-79484174 | MS.gene56124:intron |
| ATCAATTGATGTATGCTGAT+CGG | 0.588153 | 7.4:-79485013 | MS.gene56124:CDS |
| ATCTGTCGGTGTTCAAGCTG+CGG | 0.596760 | 7.4:-79485333 | MS.gene56124:CDS |
| AGTTAAGAGTGAAACAATTG+AGG | 0.598247 | 7.4:-79483681 | MS.gene56124:CDS |
| TATTACATAAGGCATGTGGA+TGG | 0.599573 | 7.4:-79484254 | MS.gene56124:CDS |
| TAGATTGTAAAGAAACCTCT+CGG | 0.604791 | 7.4:+79483544 | None:intergenic |
| CCTTTCAGTCTGCCGCGCTG+AGG | 0.608957 | 7.4:-79483765 | MS.gene56124:CDS |
| CTTTCCGGTGAAGACAGAGT+TGG | 0.609309 | 7.4:-79483827 | MS.gene56124:CDS |
| TTAACAGGACGAGATAGGCC+AGG | 0.610170 | 7.4:-79485290 | MS.gene56124:CDS |
| CATGGAACTGTCAATGCTGA+AGG | 0.610676 | 7.4:-79484810 | MS.gene56124:CDS |
| CGACAGATCTTCTCACGGAT+CGG | 0.618439 | 7.4:+79485348 | None:intergenic |
| GCTTATATTTCATCTGATGG+TGG | 0.619057 | 7.4:-79486198 | MS.gene56124:CDS |
| AGGCGGTCAGGATTGTCGAT+CGG | 0.626180 | 7.4:+79485143 | None:intergenic |
| GGAATATTACATAAGGCATG+TGG | 0.628289 | 7.4:-79484258 | MS.gene56124:CDS |
| GATGGTGGATGGTTTATGGA+TGG | 0.634152 | 7.4:-79486183 | MS.gene56124:intron |
| GAAGATGCTTAATCTTGGCA+AGG | 0.637572 | 7.4:+79485123 | None:intergenic |
| AACACCGACAGATCTTCTCA+CGG | 0.646279 | 7.4:+79485343 | None:intergenic |
| CGATCCGTGAGAAGATCTGT+CGG | 0.650412 | 7.4:-79485347 | MS.gene56124:CDS |
| ACGGTATCGAATAGTAACTT+CGG | 0.652560 | 7.4:+79484867 | None:intergenic |
| CATGTCTGTGATAGTACACA+CGG | 0.656721 | 7.4:+79484848 | None:intergenic |
| CTTCTGCTTTATGTGCTGAG+AGG | 0.660385 | 7.4:-79485104 | MS.gene56124:CDS |
| ATGCAGTATGTTGTGTACCA+TGG | 0.674170 | 7.4:-79484828 | MS.gene56124:CDS |
| GATGCTTAATCTTGGCAAGG+CGG | 0.685591 | 7.4:+79485126 | None:intergenic |
| GTTGATAGTGCTAATAAACG+TGG | 0.727553 | 7.4:-79486276 | MS.gene56124:CDS |
| TGCTGACCTCAAATGCAATG+TGG | 0.737650 | 7.4:-79485240 | MS.gene56124:CDS |
| TGGACACCTCAAATTCACGA+CGG | 0.751563 | 7.4:+79484896 | None:intergenic |
| TCGTTAGGTCGAGATCCGAG+AGG | 0.772248 | 7.4:-79483559 | MS.gene56124:CDS |
| CTCTTGTCGTGACCTCAGCG+CGG | 0.773509 | 7.4:+79483753 | None:intergenic |
| TAATTCGTATGAATCCACCA+AGG | 0.787268 | 7.4:-79486542 | MS.gene56124:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTGATATTTTCTTATTTTAT+CGG | - | chr7.4:79484260-79484279 | MS.gene56124:CDS | 10.0% |
| !! | AAATGAAGAATTATTGTAAA+TGG | + | chr7.4:79483970-79483989 | None:intergenic | 15.0% |
| !! | TTTCTCTCATTAATTATTTA+CGG | - | chr7.4:79486032-79486051 | MS.gene56124:intron | 15.0% |
| !!! | AGAATTTTTTTATATCAAGT+AGG | - | chr7.4:79485538-79485557 | MS.gene56124:intron | 15.0% |
| !!! | ATTTGTTATGATTGTAATTT+AGG | - | chr7.4:79484210-79484229 | MS.gene56124:CDS | 15.0% |
| !!! | TTTGAAATTTAAACCTTATA+AGG | - | chr7.4:79483740-79483759 | MS.gene56124:CDS | 15.0% |
| !! | AAAATGGATAAAATTAGCAA+AGG | + | chr7.4:79485567-79485586 | None:intergenic | 20.0% |
| !! | AATCTTTGATGAATTTCAAA+AGG | - | chr7.4:79483767-79483786 | MS.gene56124:CDS | 20.0% |
| !! | ATCTTTGATGAATTTCAAAA+GGG | - | chr7.4:79483768-79483787 | MS.gene56124:CDS | 20.0% |
| !! | TAGAGTAATATAAACTATCA+TGG | + | chr7.4:79484451-79484470 | None:intergenic | 20.0% |
| !! | TCAAAGATTATAACCTTATA+AGG | + | chr7.4:79483756-79483775 | None:intergenic | 20.0% |
| !!! | AGTTAACTTGTATTTGATAT+AGG | - | chr7.4:79486250-79486269 | MS.gene56124:CDS | 20.0% |
| !!! | CTTTTATATTGTGGTAAAAT+CGG | + | chr7.4:79484411-79484430 | None:intergenic | 20.0% |
| !!! | GATATTTTTAAAATACCGTT+CGG | + | chr7.4:79485450-79485469 | None:intergenic | 20.0% |
| !!! | GTATTTCATTTCAATTTGTT+TGG | - | chr7.4:79485736-79485755 | MS.gene56124:intron | 20.0% |
| !!! | GTTAACTTGTATTTGATATA+GGG | - | chr7.4:79486251-79486270 | MS.gene56124:CDS | 20.0% |
| !!! | TCAATTTTCATCATACTATT+TGG | - | chr7.4:79484498-79484517 | MS.gene56124:intron | 20.0% |
| !!! | TGTTTACTAATAACACTTTT+TGG | - | chr7.4:79484703-79484722 | MS.gene56124:intron | 20.0% |
| !!! | TTGTATGTTTTTGTATTTTG+TGG | - | chr7.4:79483667-79483686 | MS.gene56124:CDS | 20.0% |
| !!! | TTTTACAGGAATATTACATA+AGG | - | chr7.4:79485849-79485868 | MS.gene56124:intron | 20.0% |
| ! | CTTGCATTTATCAATAAAGA+GGG | - | chr7.4:79486104-79486123 | MS.gene56124:intron | 25.0% |
| ! | GAAGAATTATTGTAAATGGT+AGG | + | chr7.4:79483966-79483985 | None:intergenic | 25.0% |
| ! | GTTATTAGTAAACAAAGTTC+TGG | + | chr7.4:79484697-79484716 | None:intergenic | 25.0% |
| ! | TACGCAAATATTAAGAAAAG+AGG | + | chr7.4:79486134-79486153 | None:intergenic | 25.0% |
| ! | TAGATCTGTGTAATATTCAT+CGG | - | chr7.4:79484167-79484186 | MS.gene56124:intron | 25.0% |
| ! | TTAGTTACAAACTAGATACA+AGG | - | chr7.4:79485493-79485512 | MS.gene56124:intron | 25.0% |
| ! | TTCATGTTACTGATCAAAAT+GGG | - | chr7.4:79484098-79484117 | MS.gene56124:intron | 25.0% |
| ! | TTTAATGATAACTTGAGTGA+TGG | + | chr7.4:79485806-79485825 | None:intergenic | 25.0% |
| ! | TTTCAAATTCATCATCAAGA+GGG | + | chr7.4:79483546-79483565 | None:intergenic | 25.0% |
| ! | TTTCATGTTACTGATCAAAA+TGG | - | chr7.4:79484097-79484116 | MS.gene56124:intron | 25.0% |
| ! | TTTGTCACTAAAAATACTGA+TGG | + | chr7.4:79486231-79486250 | None:intergenic | 25.0% |
| !! | TGTGATCAACTTTTATATTG+TGG | + | chr7.4:79484420-79484439 | None:intergenic | 25.0% |
| !! | TTTTCAAATTCATCATCAAG+AGG | + | chr7.4:79483547-79483566 | None:intergenic | 25.0% |
| !! | TTTTCATGTGAATTTTGTGT+AGG | - | chr7.4:79483816-79483835 | MS.gene56124:CDS | 25.0% |
| !!! | AAAAAAAAAAGCACTAGTTC+TGG | + | chr7.4:79484657-79484676 | None:intergenic | 25.0% |
| !!! | AACTAGTGCTTTTTTTTTTG+AGG | - | chr7.4:79484658-79484677 | MS.gene56124:intron | 25.0% |
| AGAACATGTTATTGTTACCT+TGG | + | chr7.4:79483592-79483611 | None:intergenic | 30.0% | |
| AGAGCTTATATTTCATCTGA+TGG | - | chr7.4:79483913-79483932 | MS.gene56124:intron | 30.0% | |
| AGTTAAGAGTGAAACAATTG+AGG | - | chr7.4:79486433-79486452 | MS.gene56124:intron | 30.0% | |
| ATAGAAAACATTCATGGCTT+GGG | + | chr7.4:79486390-79486409 | None:intergenic | 30.0% | |
| ATCAATTGATGTATGCTGAT+CGG | - | chr7.4:79485101-79485120 | MS.gene56124:CDS | 30.0% | |
| ATCATCCTATTCCAATCAAA+AGG | + | chr7.4:79484537-79484556 | None:intergenic | 30.0% | |
| CAAATTCGATCATTCTATCA+GGG | - | chr7.4:79485604-79485623 | MS.gene56124:intron | 30.0% | |
| CAGAACAACAACTTTGATAA+AGG | - | chr7.4:79483717-79483736 | MS.gene56124:CDS | 30.0% | |
| GATGTGTTAGAATGATAAAG+CGG | + | chr7.4:79485991-79486010 | None:intergenic | 30.0% | |
| GCTTGCATTTATCAATAAAG+AGG | - | chr7.4:79486103-79486122 | MS.gene56124:intron | 30.0% | |
| TAGATTGTAAAGAAACCTCT+CGG | + | chr7.4:79486573-79486592 | None:intergenic | 30.0% | |
| TCAAATTCGATCATTCTATC+AGG | - | chr7.4:79485603-79485622 | MS.gene56124:intron | 30.0% | |
| TCAATTGTTTCACTCTTAAC+TGG | + | chr7.4:79486434-79486453 | None:intergenic | 30.0% | |
| TGTCACATAGAAAACATTCA+TGG | + | chr7.4:79486396-79486415 | None:intergenic | 30.0% | |
| ! | TAATAAACGTGGTAGTTTGT+TGG | - | chr7.4:79483849-79483868 | MS.gene56124:intron | 30.0% |
| ! | TTTAGTCATTGCCTTTTGAT+TGG | - | chr7.4:79484523-79484542 | MS.gene56124:intron | 30.0% |
| !!! | TGTGTTTTGCTTTGTTTTAC+AGG | - | chr7.4:79485835-79485854 | MS.gene56124:intron | 30.0% |
| AAAGAAGATGTTAAGCCGAA+CGG | - | chr7.4:79485432-79485451 | MS.gene56124:intron | 35.0% | |
| AAGCAGAAGATGCTTAATCT+TGG | + | chr7.4:79484999-79485018 | None:intergenic | 35.0% | |
| AAGCATATTTCCATGATTCC+CGG | - | chr7.4:79484314-79484333 | MS.gene56124:intron | 35.0% | |
| ACATGTTATTGTTACCTTGG+TGG | + | chr7.4:79483589-79483608 | None:intergenic | 35.0% | |
| AGAGAAGCTCAAAATAAGTC+AGG | + | chr7.4:79485404-79485423 | None:intergenic | 35.0% | |
| CATAGAAAACATTCATGGCT+TGG | + | chr7.4:79486391-79486410 | None:intergenic | 35.0% | |
| CGGGATTATGACATATATGA+TGG | - | chr7.4:79485121-79485140 | MS.gene56124:CDS | 35.0% | |
| GAGAGGTTTCTTTACAATCT+AGG | - | chr7.4:79486572-79486591 | MS.gene56124:CDS | 35.0% | |
| GCTTATATTTCATCTGATGG+TGG | - | chr7.4:79483916-79483935 | MS.gene56124:intron | 35.0% | |
| GGAATATTACATAAGGCATG+TGG | - | chr7.4:79485856-79485875 | MS.gene56124:intron | 35.0% | |
| GTCATTCATGTTCTTGCAAT+TGG | - | chr7.4:79485347-79485366 | MS.gene56124:CDS | 35.0% | |
| TAATTCGTATGAATCCACCA+AGG | - | chr7.4:79483572-79483591 | MS.gene56124:CDS | 35.0% | |
| TATTACATAAGGCATGTGGA+TGG | - | chr7.4:79485860-79485879 | MS.gene56124:intron | 35.0% | |
| TCAATTGATGTATGCTGATC+GGG | - | chr7.4:79485102-79485121 | MS.gene56124:CDS | 35.0% | |
| TCCAAATCAACAGTCGTTTA+AGG | + | chr7.4:79486161-79486180 | None:intergenic | 35.0% | |
| TGTAGCTGATAGAATTCAAC+AGG | - | chr7.4:79484141-79484160 | MS.gene56124:intron | 35.0% | |
| TGTGAGTACTACATATGACA+TGG | - | chr7.4:79486182-79486201 | MS.gene56124:intron | 35.0% | |
| TTCACTCTTAACTGGATTTC+CGG | + | chr7.4:79486426-79486445 | None:intergenic | 35.0% | |
| ! | ACCTTAAACGACTGTTGATT+TGG | - | chr7.4:79486157-79486176 | MS.gene56124:intron | 35.0% |
| ! | ACGGTATCGAATAGTAACTT+CGG | + | chr7.4:79485250-79485269 | None:intergenic | 35.0% |
| ! | ACTCGCATCTTTAGAGAAAA+CGG | - | chr7.4:79486326-79486345 | MS.gene56124:intron | 35.0% |
| ! | CGGCTTAACATCTTCTTTTA+AGG | + | chr7.4:79485430-79485449 | None:intergenic | 35.0% |
| !! | ATATTTCATCTGATGGTGGA+TGG | - | chr7.4:79483920-79483939 | MS.gene56124:intron | 35.0% |
| !! | CATTGCCTTTTGATTGGAAT+AGG | - | chr7.4:79484529-79484548 | MS.gene56124:intron | 35.0% |
| !! | GTTGATAGTGCTAATAAACG+TGG | - | chr7.4:79483838-79483857 | MS.gene56124:CDS | 35.0% |
| !! | GTTGATGATTGCATCGATAA+AGG | - | chr7.4:79485190-79485209 | MS.gene56124:CDS | 35.0% |
| AAGAGTAATTCACTGCTTGG+AGG | - | chr7.4:79485913-79485932 | MS.gene56124:intron | 40.0% | |
| AATAGTAACTTCGGTCGATC+TGG | + | chr7.4:79485241-79485260 | None:intergenic | 40.0% | |
| ATGCAGTATGTTGTGTACCA+TGG | - | chr7.4:79485286-79485305 | MS.gene56124:CDS | 40.0% | |
| ATGCTTAAAATCTCCTACCC+GGG | - | chr7.4:79486505-79486524 | MS.gene56124:intron | 40.0% | |
| CAGCAATAAATCGGTCTCAA+AGG | - | chr7.4:79484344-79484363 | MS.gene56124:intron | 40.0% | |
| CATACAACGATCGAGTTAAC+AGG | - | chr7.4:79484809-79484828 | MS.gene56124:CDS | 40.0% | |
| CATGCTTAAAATCTCCTACC+CGG | - | chr7.4:79486504-79486523 | MS.gene56124:intron | 40.0% | |
| CATGTCTGTGATAGTACACA+CGG | + | chr7.4:79485269-79485288 | None:intergenic | 40.0% | |
| CTGGACACACAATTCAAGAA+TGG | - | chr7.4:79484910-79484929 | MS.gene56124:CDS | 40.0% | |
| CTTTCTGCTTCAGAACTGAT+TGG | + | chr7.4:79485890-79485909 | None:intergenic | 40.0% | |
| GAAGATGCTTAATCTTGGCA+AGG | + | chr7.4:79484994-79485013 | None:intergenic | 40.0% | |
| GATATACCGTCGTGAATTTG+AGG | - | chr7.4:79485212-79485231 | MS.gene56124:CDS | 40.0% | |
| GCAAAGAGTAATTCACTGCT+TGG | - | chr7.4:79485910-79485929 | MS.gene56124:intron | 40.0% | |
| TAGAAAGGATGCGTCAGAAT+AGG | + | chr7.4:79485770-79485789 | None:intergenic | 40.0% | |
| TCTCTTTACGTGATCTCGTT+AGG | - | chr7.4:79486540-79486559 | MS.gene56124:intron | 40.0% | |
| TGATAAAGCGGCGCTTAATT+TGG | + | chr7.4:79485979-79485998 | None:intergenic | 40.0% | |
| TGCGAGTTACATCAGACAAA+AGG | + | chr7.4:79486313-79486332 | None:intergenic | 40.0% | |
| TGTGGTAAAATCGGCAAATG+TGG | + | chr7.4:79484402-79484421 | None:intergenic | 40.0% | |
| TTCTATGTGACAGATGTGTC+CGG | - | chr7.4:79486404-79486423 | MS.gene56124:CDS | 40.0% | |
| TTTGTTCGACTCACAAGGAT+AGG | - | chr7.4:79485071-79485090 | MS.gene56124:CDS | 40.0% | |
| ! | AAGACTTCTGAAAGCAATCC+TGG | + | chr7.4:79484845-79484864 | None:intergenic | 40.0% |
| ! | AAGAGAATTTTCCACTCTCC+CGG | + | chr7.4:79486526-79486545 | None:intergenic | 40.0% |
| ! | ATTTTGTGGCAGAGTAACTG+TGG | - | chr7.4:79483681-79483700 | MS.gene56124:CDS | 40.0% |
| ! | GTTTTCTTGTTCCAGTCACT+TGG | - | chr7.4:79484725-79484744 | MS.gene56124:intron | 40.0% |
| ! | TGAAGGAACAGAAGCATATC+AGG | - | chr7.4:79485321-79485340 | MS.gene56124:CDS | 40.0% |
| !! | ATCTGATGGTGGATGGTTTA+TGG | - | chr7.4:79483927-79483946 | MS.gene56124:intron | 40.0% |
| !! | CAATCAGTTCTGAAGCAGAA+AGG | - | chr7.4:79485888-79485907 | MS.gene56124:intron | 40.0% |
| !! | TTCGTTTTGTTCGACTCACA+AGG | - | chr7.4:79485066-79485085 | MS.gene56124:CDS | 40.0% |
| AACACCGACAGATCTTCTCA+CGG | + | chr7.4:79484774-79484793 | None:intergenic | 45.0% | |
| AGGCTGTTCGAAAAGAGATC+GGG | - | chr7.4:79486453-79486472 | MS.gene56124:intron | 45.0% | |
| CATGGAACTGTCAATGCTGA+AGG | - | chr7.4:79485304-79485323 | MS.gene56124:CDS | 45.0% | |
| CCTCAAATGCAATGTGGTAG+CGG | - | chr7.4:79484880-79484899 | MS.gene56124:CDS | 45.0% | |
| CGACATCACAACCACAATTG+CGG | - | chr7.4:79484376-79484395 | MS.gene56124:intron | 45.0% | |
| CTTCTGCTTTATGTGCTGAG+AGG | - | chr7.4:79485010-79485029 | MS.gene56124:CDS | 45.0% | |
| GAGGCTGTTCGAAAAGAGAT+CGG | - | chr7.4:79486452-79486471 | MS.gene56124:intron | 45.0% | |
| GATGCTTAATCTTGGCAAGG+CGG | + | chr7.4:79484991-79485010 | None:intergenic | 45.0% | |
| GGACTCATAAGCTGGTAGAA+AGG | + | chr7.4:79485785-79485804 | None:intergenic | 45.0% | |
| GGTGTAAAGCTCGAACTTTC+CGG | - | chr7.4:79486272-79486291 | MS.gene56124:CDS | 45.0% | |
| TCGAGTTAACAGGACGAGAT+AGG | - | chr7.4:79484819-79484838 | MS.gene56124:CDS | 45.0% | |
| TGCAAGCTCGATAATGTCGT+TGG | + | chr7.4:79486090-79486109 | None:intergenic | 45.0% | |
| TGCTGACCTCAAATGCAATG+TGG | - | chr7.4:79484874-79484893 | MS.gene56124:CDS | 45.0% | |
| TGGACACCTCAAATTCACGA+CGG | + | chr7.4:79485221-79485240 | None:intergenic | 45.0% | |
| ! | AAGCGGCGCTTAATTTGGAA+CGG | + | chr7.4:79485974-79485993 | None:intergenic | 45.0% |
| ! | AGAGAATTTTCCACTCTCCC+GGG | + | chr7.4:79486525-79486544 | None:intergenic | 45.0% |
| ! | CGGGTAGGAGATTTTAAGCA+TGG | + | chr7.4:79486506-79486525 | None:intergenic | 45.0% |
| !! | CTTCAGCATTGACAGTTCCA+TGG | + | chr7.4:79485306-79485325 | None:intergenic | 45.0% |
| !! | GATGGTGGATGGTTTATGGA+TGG | - | chr7.4:79483931-79483950 | MS.gene56124:intron | 45.0% |
| !! | TGAGTGATGGACTCATAAGC+TGG | + | chr7.4:79485793-79485812 | None:intergenic | 45.0% |
| !! | AAAAAATATTAAAAAAACAA+TGG | + | chr7.4:79484013-79484032 | None:intergenic | 5.0% |
| !! | GTTAAATATTAATAATAAAA+TGG | + | chr7.4:79485583-79485602 | None:intergenic | 5.0% |
| AAGGCCAACTCTGTCTTCAC+CGG | + | chr7.4:79486294-79486313 | None:intergenic | 50.0% | |
| CCGCTACCACATTGCATTTG+AGG | + | chr7.4:79484883-79484902 | None:intergenic | 50.0% | |
| CGACAGATCTTCTCACGGAT+CGG | + | chr7.4:79484769-79484788 | None:intergenic | 50.0% | |
| CGATCCGTGAGAAGATCTGT+CGG | - | chr7.4:79484767-79484786 | MS.gene56124:intron | 50.0% | |
| CTTTCCGGTGAAGACAGAGT+TGG | - | chr7.4:79486287-79486306 | MS.gene56124:intron | 50.0% | |
| GTACCTCAGAAGTTCGCCTT+CGG | + | chr7.4:79485946-79485965 | None:intergenic | 50.0% | |
| GTTCGACTCACAAGGATAGG+AGG | - | chr7.4:79485074-79485093 | MS.gene56124:CDS | 50.0% | |
| TACATCACCGACGACACAAC+AGG | - | chr7.4:79484944-79484963 | MS.gene56124:CDS | 50.0% | |
| TTAACAGGACGAGATAGGCC+AGG | - | chr7.4:79484824-79484843 | MS.gene56124:CDS | 50.0% | |
| TTAATCTTGGCAAGGCGGTC+AGG | + | chr7.4:79484986-79485005 | None:intergenic | 50.0% | |
| TTCTCACGGATCGGAAGCTA+CGG | + | chr7.4:79484760-79484779 | None:intergenic | 50.0% | |
| ! | AATTTTCCACTCTCCCGGGT+AGG | + | chr7.4:79486521-79486540 | None:intergenic | 50.0% |
| ! | AGACCGATTTATTGCTGCCG+CGG | + | chr7.4:79484341-79484360 | None:intergenic | 50.0% |
| ! | ATCTGTCGGTGTTCAAGCTG+CGG | - | chr7.4:79484781-79484800 | MS.gene56124:intron | 50.0% |
| ! | GGCGCTTAATTTGGAACGGA+GGG | + | chr7.4:79485970-79485989 | None:intergenic | 50.0% |
| AAATCTCCTACCCGGGAGAG+TGG | - | chr7.4:79486512-79486531 | MS.gene56124:intron | 55.0% | |
| AGGCGGTCAGGATTGTCGAT+CGG | + | chr7.4:79484974-79484993 | None:intergenic | 55.0% | |
| ATTTATTGCTGCCGCGGACC+GGG | + | chr7.4:79484335-79484354 | None:intergenic | 55.0% | |
| CGGCAATCCTGTTGTGTCGT+CGG | + | chr7.4:79484954-79484973 | None:intergenic | 55.0% | |
| GATCGGAAGCTACGGACTCT+TGG | + | chr7.4:79484752-79484771 | None:intergenic | 55.0% | |
| GATTTATTGCTGCCGCGGAC+CGG | + | chr7.4:79484336-79484355 | None:intergenic | 55.0% | |
| GGACTCTTGGACCAAGTGAC+TGG | + | chr7.4:79484739-79484758 | None:intergenic | 55.0% | |
| GGCAAATGTGGCCGCAATTG+TGG | + | chr7.4:79484390-79484409 | None:intergenic | 55.0% | |
| GGTCCGCGGCAGCAATAAAT+CGG | - | chr7.4:79484335-79484354 | MS.gene56124:intron | 55.0% | |
| TCGTTAGGTCGAGATCCGAG+AGG | - | chr7.4:79486555-79486574 | MS.gene56124:CDS | 55.0% | |
| TGTCCGAAGGCGAACTTCTG+AGG | - | chr7.4:79485940-79485959 | MS.gene56124:intron | 55.0% | |
| TTTCCATGATTCCCGGTCCG+CGG | - | chr7.4:79484321-79484340 | MS.gene56124:intron | 55.0% | |
| ! | CGGCGCTTAATTTGGAACGG+AGG | + | chr7.4:79485971-79485990 | None:intergenic | 55.0% |
| !! | ATGTGGTAGCGGCTGAAGTC+TGG | - | chr7.4:79484891-79484910 | MS.gene56124:CDS | 55.0% |
| CTCTTGTCGTGACCTCAGCG+CGG | + | chr7.4:79486364-79486383 | None:intergenic | 60.0% | |
| CCTCAGCGCGGCAGACTGAA+AGG | + | chr7.4:79486352-79486371 | None:intergenic | 65.0% | |
| CCTTTCAGTCTGCCGCGCTG+AGG | - | chr7.4:79486349-79486368 | MS.gene56124:intron | 65.0% | |
| CGCGCTGAGGTCACGACAAG+AGG | - | chr7.4:79486362-79486381 | MS.gene56124:intron | 65.0% | |
| GCTTGGAGGCTGCTGTCCGA+AGG | - | chr7.4:79485927-79485946 | MS.gene56124:intron | 65.0% | |
| CTGCCGCGGACCGGGAATCA+TGG | + | chr7.4:79484327-79484346 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 79483520 | 79486616 | 79483520 | ID=MS.gene56124 |
| chr7.4 | mRNA | 79483520 | 79486616 | 79483520 | ID=MS.gene56124.t1;Parent=MS.gene56124 |
| chr7.4 | exon | 79486543 | 79486616 | 79486543 | ID=MS.gene56124.t1.exon1;Parent=MS.gene56124.t1 |
| chr7.4 | CDS | 79486543 | 79486616 | 79486543 | ID=cds.MS.gene56124.t1;Parent=MS.gene56124.t1 |
| chr7.4 | exon | 79486398 | 79486443 | 79486398 | ID=MS.gene56124.t1.exon2;Parent=MS.gene56124.t1 |
| chr7.4 | CDS | 79486398 | 79486443 | 79486398 | ID=cds.MS.gene56124.t1;Parent=MS.gene56124.t1 |
| chr7.4 | exon | 79486184 | 79486298 | 79486184 | ID=MS.gene56124.t1.exon3;Parent=MS.gene56124.t1 |
| chr7.4 | CDS | 79486184 | 79486298 | 79486184 | ID=cds.MS.gene56124.t1;Parent=MS.gene56124.t1 |
| chr7.4 | exon | 79485974 | 79486041 | 79485974 | ID=MS.gene56124.t1.exon4;Parent=MS.gene56124.t1 |
| chr7.4 | CDS | 79485974 | 79486041 | 79485974 | ID=cds.MS.gene56124.t1;Parent=MS.gene56124.t1 |
| chr7.4 | exon | 79484794 | 79485396 | 79484794 | ID=MS.gene56124.t1.exon5;Parent=MS.gene56124.t1 |
| chr7.4 | CDS | 79484794 | 79485396 | 79484794 | ID=cds.MS.gene56124.t1;Parent=MS.gene56124.t1 |
| chr7.4 | exon | 79484175 | 79484279 | 79484175 | ID=MS.gene56124.t1.exon6;Parent=MS.gene56124.t1 |
| chr7.4 | CDS | 79484175 | 79484279 | 79484175 | ID=cds.MS.gene56124.t1;Parent=MS.gene56124.t1 |
| chr7.4 | exon | 79483520 | 79483864 | 79483520 | ID=MS.gene56124.t1.exon7;Parent=MS.gene56124.t1 |
| chr7.4 | CDS | 79483520 | 79483864 | 79483520 | ID=cds.MS.gene56124.t1;Parent=MS.gene56124.t1 |
| Gene Sequence |
| Protein sequence |
