Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56439.t1 | AQQ72605.1 | 96.6 | 355 | 6 | 2 | 1 | 354 | 1 | 350 | 8.50E-184 | 652.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56439.t1 | Q8W245 | 59.9 | 367 | 131 | 4 | 1 | 354 | 1 | 364 | 2.4e-110 | 400.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56439.t1 | A0A1S5XVC2 | 96.6 | 355 | 6 | 2 | 1 | 354 | 1 | 350 | 6.1e-184 | 652.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049549 | MS.gene56439 | 0.814909 | 1.21E-51 | -1.69E-46 |
| MS.gene05240 | MS.gene56439 | 0.800152 | 1.65E-48 | -1.69E-46 |
| MS.gene05244 | MS.gene56439 | 0.800032 | 1.74E-48 | -1.69E-46 |
| MS.gene054706 | MS.gene56439 | 0.809328 | 2.00E-50 | -1.69E-46 |
| MS.gene054742 | MS.gene56439 | 0.823108 | 1.65E-53 | -1.69E-46 |
| MS.gene056330 | MS.gene56439 | 0.819804 | 9.58E-53 | -1.69E-46 |
| MS.gene056387 | MS.gene56439 | -0.804512 | 2.08E-49 | -1.69E-46 |
| MS.gene056590 | MS.gene56439 | 0.808978 | 2.37E-50 | -1.69E-46 |
| MS.gene056591 | MS.gene56439 | 0.808785 | 2.61E-50 | -1.69E-46 |
| MS.gene056688 | MS.gene56439 | 0.805301 | 1.43E-49 | -1.69E-46 |
| MS.gene056697 | MS.gene56439 | 0.80463 | 1.97E-49 | -1.69E-46 |
| MS.gene056920 | MS.gene56439 | 0.816134 | 6.47E-52 | -1.69E-46 |
| MS.gene058158 | MS.gene56439 | 0.811583 | 6.51E-51 | -1.69E-46 |
| MS.gene059328 | MS.gene56439 | 0.806686 | 7.29E-50 | -1.69E-46 |
| MS.gene059955 | MS.gene56439 | 0.812094 | 5.04E-51 | -1.69E-46 |
| MS.gene060087 | MS.gene56439 | 0.803951 | 2.73E-49 | -1.69E-46 |
| MS.gene060405 | MS.gene56439 | 0.81775 | 2.80E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene56439 | MS.gene009810 | PPI |
| MS.gene56439 | MS.gene54167 | PPI |
| MS.gene56439 | MS.gene50197 | PPI |
| MS.gene56439 | MS.gene56999 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56439.t1 | MTR_4g083570 | 96.620 | 355 | 6 | 2 | 1 | 354 | 1 | 350 | 0.0 | 689 |
| MS.gene56439.t1 | MTR_8g105030 | 55.952 | 336 | 146 | 2 | 13 | 348 | 14 | 347 | 1.59e-127 | 371 |
| MS.gene56439.t1 | MTR_2g064310 | 48.169 | 355 | 182 | 1 | 2 | 354 | 4 | 358 | 6.22e-115 | 338 |
| MS.gene56439.t1 | MTR_3g082050 | 52.260 | 354 | 147 | 6 | 10 | 354 | 9 | 349 | 8.25e-111 | 327 |
| MS.gene56439.t1 | MTR_3g081640 | 48.774 | 367 | 169 | 5 | 1 | 354 | 1 | 361 | 2.37e-110 | 326 |
| MS.gene56439.t1 | MTR_3g082050 | 54.294 | 326 | 131 | 5 | 38 | 354 | 56 | 372 | 2.04e-109 | 324 |
| MS.gene56439.t1 | MTR_3g082050 | 54.294 | 326 | 131 | 5 | 38 | 354 | 61 | 377 | 2.80e-109 | 324 |
| MS.gene56439.t1 | MTR_3g081580 | 50.430 | 349 | 164 | 4 | 14 | 354 | 11 | 358 | 1.06e-105 | 314 |
| MS.gene56439.t1 | MTR_3g081690 | 51.988 | 327 | 135 | 6 | 10 | 327 | 9 | 322 | 2.80e-100 | 300 |
| MS.gene56439.t1 | MTR_3g081690 | 54.181 | 299 | 119 | 5 | 38 | 327 | 56 | 345 | 6.02e-99 | 297 |
| MS.gene56439.t1 | MTR_3g104400 | 42.500 | 360 | 173 | 4 | 29 | 354 | 6 | 365 | 1.64e-89 | 273 |
| MS.gene56439.t1 | MTR_6g007687 | 41.667 | 324 | 180 | 2 | 29 | 351 | 29 | 344 | 2.31e-86 | 265 |
| MS.gene56439.t1 | MTR_1g016120 | 39.837 | 369 | 175 | 6 | 27 | 354 | 12 | 374 | 2.75e-82 | 255 |
| MS.gene56439.t1 | MTR_5g071990 | 41.390 | 331 | 158 | 9 | 35 | 354 | 13 | 318 | 4.28e-76 | 237 |
| MS.gene56439.t1 | MTR_3g081690 | 50.926 | 216 | 88 | 5 | 121 | 327 | 25 | 231 | 2.17e-56 | 184 |
| MS.gene56439.t1 | MTR_3g081690 | 61.429 | 140 | 52 | 1 | 188 | 327 | 50 | 187 | 1.02e-53 | 176 |
| MS.gene56439.t1 | MTR_3g081690 | 61.429 | 140 | 52 | 1 | 188 | 327 | 72 | 209 | 6.18e-53 | 175 |
| MS.gene56439.t1 | MTR_3g058630 | 25.180 | 278 | 179 | 8 | 87 | 353 | 89 | 348 | 1.28e-17 | 83.2 |
| MS.gene56439.t1 | MTR_4g006710 | 37.778 | 90 | 55 | 1 | 37 | 126 | 25 | 113 | 4.00e-13 | 65.9 |
| MS.gene56439.t1 | MTR_3g081630 | 55.556 | 54 | 24 | 0 | 77 | 130 | 17 | 70 | 9.59e-13 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56439.t1 | AT1G31260 | 63.905 | 338 | 115 | 4 | 23 | 354 | 28 | 364 | 7.96e-152 | 432 |
| MS.gene56439.t1 | AT4G19690 | 59.155 | 355 | 129 | 3 | 4 | 354 | 5 | 347 | 4.54e-146 | 417 |
| MS.gene56439.t1 | AT4G19680 | 55.966 | 352 | 143 | 4 | 9 | 354 | 5 | 350 | 5.56e-134 | 386 |
| MS.gene56439.t1 | AT2G04032 | 51.507 | 365 | 166 | 4 | 1 | 354 | 1 | 365 | 2.66e-127 | 370 |
| MS.gene56439.t1 | AT1G05300 | 49.405 | 336 | 158 | 5 | 27 | 354 | 29 | 360 | 1.17e-103 | 309 |
| MS.gene56439.t1 | AT2G32270 | 47.401 | 327 | 150 | 3 | 28 | 354 | 35 | 339 | 9.28e-100 | 298 |
| MS.gene56439.t1 | AT3G12750 | 46.499 | 357 | 178 | 6 | 3 | 354 | 7 | 355 | 9.93e-99 | 296 |
| MS.gene56439.t1 | AT5G62160 | 43.855 | 358 | 189 | 6 | 3 | 354 | 4 | 355 | 1.84e-92 | 280 |
| MS.gene56439.t1 | AT4G19680 | 54.941 | 253 | 102 | 4 | 9 | 255 | 5 | 251 | 3.11e-90 | 271 |
| MS.gene56439.t1 | AT1G10970 | 41.096 | 365 | 176 | 2 | 29 | 354 | 10 | 374 | 1.33e-88 | 271 |
| MS.gene56439.t1 | AT1G10970 | 41.096 | 365 | 176 | 2 | 29 | 354 | 10 | 374 | 1.33e-88 | 271 |
| MS.gene56439.t1 | AT1G60960 | 39.737 | 380 | 175 | 5 | 29 | 354 | 36 | 415 | 2.49e-82 | 256 |
| MS.gene56439.t1 | AT1G60960 | 39.737 | 380 | 175 | 5 | 29 | 354 | 46 | 425 | 3.85e-82 | 256 |
| MS.gene56439.t1 | AT4G33020 | 36.745 | 381 | 187 | 5 | 21 | 354 | 18 | 391 | 2.73e-76 | 240 |
| MS.gene56439.t1 | AT2G30080 | 40.000 | 345 | 162 | 8 | 36 | 354 | 16 | 341 | 5.67e-73 | 230 |
| MS.gene56439.t1 | AT4G33020 | 37.536 | 349 | 164 | 5 | 53 | 354 | 3 | 344 | 1.00e-70 | 224 |
| MS.gene56439.t1 | AT1G05300 | 47.699 | 239 | 113 | 5 | 23 | 253 | 25 | 259 | 1.62e-60 | 196 |
| MS.gene56439.t1 | AT4G19690 | 50.244 | 205 | 86 | 3 | 4 | 204 | 5 | 197 | 3.40e-60 | 193 |
| MS.gene56439.t1 | AT1G60960 | 36.905 | 168 | 89 | 2 | 29 | 181 | 46 | 211 | 1.39e-26 | 107 |
Find 81 sgRNAs with CRISPR-Local
Find 109 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAATGTCTCTCATGGCTAAA+TGG | 0.207478 | 4.3:+27922888 | MS.gene56439:CDS |
| TTCGCGGCTGGTATTATTCT+TGG | 0.240329 | 4.3:+27921611 | MS.gene56439:CDS |
| CTGCTGATTTCATGAGTAAA+AGG | 0.266636 | 4.3:+27922804 | MS.gene56439:CDS |
| GAGATTGGTGATGTTAATAT+TGG | 0.296837 | 4.3:+27921848 | MS.gene56439:CDS |
| AGTTGCTAAGATTGAGAATA+TGG | 0.306889 | 4.3:-27921501 | None:intergenic |
| AATAATACGTGCTCAATAAA+AGG | 0.315250 | 4.3:+27922309 | MS.gene56439:CDS |
| GTAGTTCATTCAGTGGTAAT+AGG | 0.316286 | 4.3:+27922267 | MS.gene56439:CDS |
| CCATGCCTTCAAACATTTGA+TGG | 0.321997 | 4.3:-27922353 | None:intergenic |
| CACAACATCTCGTACGAATC+AGG | 0.323449 | 4.3:-27921656 | None:intergenic |
| TCGCGGCTGGTATTATTCTT+GGG | 0.375353 | 4.3:+27921612 | MS.gene56439:CDS |
| ATTATGAAAAGATCTCCTTC+TGG | 0.382856 | 4.3:-27921578 | None:intergenic |
| TTCTCAATTACAACACCTCT+TGG | 0.401281 | 4.3:+27922653 | MS.gene56439:CDS |
| GATGTTGTGGAGTGATTGTT+TGG | 0.410026 | 4.3:+27921670 | MS.gene56439:CDS |
| TCTTGAACCCATGATGAATA+TGG | 0.411099 | 4.3:-27921889 | None:intergenic |
| ACACCTCTTGGAATTGCAAT+AGG | 0.413916 | 4.3:+27922665 | MS.gene56439:CDS |
| TTTGTTGTTGCAACTGTTTG+TGG | 0.418785 | 4.3:-27921450 | None:intergenic |
| CTCCTTCTGGGCTTAAAGCC+GGG | 0.423076 | 4.3:-27921565 | None:intergenic |
| CATTCAGTGGTAATAGGACT+TGG | 0.426048 | 4.3:+27922273 | MS.gene56439:CDS |
| ATCTTAGCAACTAGTGTGAT+TGG | 0.426800 | 4.3:+27921512 | MS.gene56439:CDS |
| CCATCAAATGTTTGAAGGCA+TGG | 0.429134 | 4.3:+27922353 | MS.gene56439:CDS |
| TTATGAAAAGATCTCCTTCT+GGG | 0.444575 | 4.3:-27921577 | None:intergenic |
| TGCTTCCATCAAATGTTTGA+AGG | 0.446007 | 4.3:+27922348 | MS.gene56439:CDS |
| TCATCTCCACCATTGCTCTC+TGG | 0.458056 | 4.3:-27921821 | None:intergenic |
| GCTGGTATTATTCTTGGGAC+CGG | 0.460618 | 4.3:+27921617 | MS.gene56439:CDS |
| CATAGCCACAAGTCCCGAAA+AGG | 0.460897 | 4.3:-27921717 | None:intergenic |
| CCAACGGTGATTAGTGCTAC+TGG | 0.463209 | 4.3:-27922722 | None:intergenic |
| AATGTCTCTCATGGCTAAAT+GGG | 0.469779 | 4.3:+27922889 | MS.gene56439:CDS |
| TCTTGGTGGCTGCATTCTCC+AGG | 0.469784 | 4.3:+27922377 | MS.gene56439:CDS |
| TACAGTAAGAAGGGTAAGAG+TGG | 0.472268 | 4.3:+27921788 | MS.gene56439:CDS |
| TCTCCTTCTGGGCTTAAAGC+CGG | 0.479091 | 4.3:-27921566 | None:intergenic |
| TTGCTTAATGCATCATCTGC+TGG | 0.479417 | 4.3:+27922746 | MS.gene56439:CDS |
| CTGGTATTATTCTTGGGACC+GGG | 0.483697 | 4.3:+27921618 | MS.gene56439:CDS |
| TATTGAGCACGTATTATTGG+AGG | 0.484451 | 4.3:-27922304 | None:intergenic |
| TACTAGTTATTACAGTAAGA+AGG | 0.485703 | 4.3:+27921778 | MS.gene56439:CDS |
| GATTGGTGTGTGTTTACCCT+TGG | 0.492007 | 4.3:+27921529 | MS.gene56439:CDS |
| GTTCTTAAAGAATGCAATGT+TGG | 0.492455 | 4.3:+27922622 | MS.gene56439:CDS |
| CATCAAATGTTTGAAGGCAT+GGG | 0.494735 | 4.3:+27922354 | MS.gene56439:CDS |
| ATGTTTGAAGGCATGGGTCT+TGG | 0.494950 | 4.3:+27922360 | MS.gene56439:CDS |
| TTTGAAGGCATGGGTCTTGG+TGG | 0.502758 | 4.3:+27922363 | MS.gene56439:CDS |
| CTCTTTGTAACTCGTTGACA+TGG | 0.505121 | 4.3:-27922693 | None:intergenic |
| CATAATCGTGAAATGTTTCG+CGG | 0.505305 | 4.3:+27921595 | MS.gene56439:CDS |
| ACGTTATCGCGTAGTGGTCA+TGG | 0.509828 | 4.3:+27921940 | MS.gene56439:CDS |
| GTAGCAGTATTCCTTGGTGC+TGG | 0.511964 | 4.3:+27922863 | MS.gene56439:CDS |
| TTTCATGAGTAAAAGGATGC+AGG | 0.512721 | 4.3:+27922811 | MS.gene56439:CDS |
| AAAATACAGGTATTAGAACT+TGG | 0.513674 | 4.3:+27922240 | MS.gene56439:intron |
| GGTGGTCACCATATTCATCA+TGG | 0.520218 | 4.3:+27921881 | MS.gene56439:CDS |
| CTTGGCGACACGTTCAATCC+CGG | 0.523996 | 4.3:+27921547 | MS.gene56439:CDS |
| TCTTATGTAGCAGTATTCCT+TGG | 0.528829 | 4.3:+27922857 | MS.gene56439:CDS |
| AGTGGTAATAGGACTTGGAA+TGG | 0.532560 | 4.3:+27922278 | MS.gene56439:CDS |
| ATCGTGAAATGTTTCGCGGC+TGG | 0.535387 | 4.3:+27921599 | MS.gene56439:CDS |
| GCAGTATTCCTTGGTGCTGG+TGG | 0.536079 | 4.3:+27922866 | MS.gene56439:CDS |
| CTGATTCGTACGAGATGTTG+TGG | 0.549620 | 4.3:+27921657 | MS.gene56439:CDS |
| GGTGGAGATGATCAAGAGAT+TGG | 0.555287 | 4.3:+27921833 | MS.gene56439:CDS |
| CCAGTAGCACTAATCACCGT+TGG | 0.563157 | 4.3:+27922722 | MS.gene56439:CDS |
| TGCTGGTGGAATGTCTCTCA+TGG | 0.563652 | 4.3:+27922880 | MS.gene56439:CDS |
| ACTAGTTATTACAGTAAGAA+GGG | 0.565297 | 4.3:+27921779 | MS.gene56439:CDS |
| TGGAATTGTAGTTCATTCAG+TGG | 0.570042 | 4.3:+27922260 | MS.gene56439:CDS |
| CGGGATTGAACGTGTCGCCA+AGG | 0.570970 | 4.3:-27921546 | None:intergenic |
| CTCCGCGGTGATCACAATGA+TGG | 0.573156 | 4.3:+27921742 | MS.gene56439:CDS |
| GTGGTAATAGGACTTGGAAT+GGG | 0.573923 | 4.3:+27922279 | MS.gene56439:CDS |
| ACAACATCTCGTACGAATCA+GGG | 0.576077 | 4.3:-27921655 | None:intergenic |
| TTCATGAGTAAAAGGATGCA+GGG | 0.578472 | 4.3:+27922812 | MS.gene56439:CDS |
| GTGGTCACCATATTCATCAT+GGG | 0.584783 | 4.3:+27921882 | MS.gene56439:CDS |
| ATAGCCACAAGTCCCGAAAA+GGG | 0.585128 | 4.3:-27921716 | None:intergenic |
| ATCCCGGCTTTAAGCCCAGA+AGG | 0.597081 | 4.3:+27921563 | MS.gene56439:CDS |
| GGGATTGAACGTGTCGCCAA+GGG | 0.597907 | 4.3:-27921545 | None:intergenic |
| GTGATTCCAGAGAGCAATGG+TGG | 0.601721 | 4.3:+27921815 | MS.gene56439:CDS |
| AGGGAGTACATGCATGAACC+CGG | 0.608876 | 4.3:-27921636 | None:intergenic |
| GAAAAGGGAAACTCGCGCCA+TGG | 0.616977 | 4.3:-27921701 | None:intergenic |
| ACGCGATAACGTAGAAGTTG+TGG | 0.620330 | 4.3:-27921929 | None:intergenic |
| AAACATTTGATGGAAGCACA+TGG | 0.651723 | 4.3:-27922343 | None:intergenic |
| TGATGCATTAAGCAATCCAA+CGG | 0.658064 | 4.3:-27922738 | None:intergenic |
| ACTTCTACGTTATCGCGTAG+TGG | 0.669693 | 4.3:+27921934 | MS.gene56439:CDS |
| AATATTGGACATTCACATGG+TGG | 0.690269 | 4.3:+27921863 | MS.gene56439:CDS |
| GTTAATATTGGACATTCACA+TGG | 0.691186 | 4.3:+27921860 | MS.gene56439:CDS |
| AGTCCTATTGCAATTCCAAG+AGG | 0.705793 | 4.3:-27922668 | None:intergenic |
| GAGACATTCCACCAGCACCA+AGG | 0.709438 | 4.3:-27922874 | None:intergenic |
| ATTGTTTGGATGAGAAACCA+TGG | 0.713002 | 4.3:+27921684 | MS.gene56439:CDS |
| GTTGTGATTCCAGAGAGCAA+TGG | 0.732938 | 4.3:+27921812 | MS.gene56439:CDS |
| ACTTGTGGCTATGTTCTCCG+CGG | 0.748611 | 4.3:+27921727 | MS.gene56439:CDS |
| GACCATCATTGTGATCACCG+CGG | 0.808072 | 4.3:-27921744 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GTTAATTAATTGAATATATA+TGG | - | chr4.3:27922426-27922445 | None:intergenic | 10.0% |
| !! | CTAATTTGATATTAAAATAC+AGG | + | chr4.3:27922227-27922246 | MS.gene56439:intron | 15.0% |
| !! | AAATATTGAATCAAATTACC+TGG | - | chr4.3:27922398-27922417 | None:intergenic | 20.0% |
| !! | AATGTTAGAGACATTAAATT+TGG | - | chr4.3:27922118-27922137 | None:intergenic | 20.0% |
| !! | TTTATCAACGAAATTAAAGA+TGG | + | chr4.3:27922136-27922155 | MS.gene56439:intron | 20.0% |
| ! | AAAATACAGGTATTAGAACT+TGG | + | chr4.3:27922240-27922259 | MS.gene56439:intron | 25.0% |
| ! | AACACTTCAATCTTTATAAC+AGG | + | chr4.3:27922589-27922608 | MS.gene56439:intron | 25.0% |
| ! | AATAATACGTGCTCAATAAA+AGG | + | chr4.3:27922309-27922328 | MS.gene56439:CDS | 25.0% |
| ! | AATTAGAAGAAGCTGAAATA+AGG | + | chr4.3:27922070-27922089 | MS.gene56439:intron | 25.0% |
| ! | ACTAGTTATTACAGTAAGAA+GGG | + | chr4.3:27921779-27921798 | MS.gene56439:CDS | 25.0% |
| ! | TACTAGTTATTACAGTAAGA+AGG | + | chr4.3:27921778-27921797 | MS.gene56439:CDS | 25.0% |
| !! | TTTTATTGAGCACGTATTAT+TGG | - | chr4.3:27922310-27922329 | None:intergenic | 25.0% |
| AGTTGCTAAGATTGAGAATA+TGG | - | chr4.3:27921504-27921523 | None:intergenic | 30.0% | |
| ATTACCTTCAATTCATCGAA+GGG | + | chr4.3:27922159-27922178 | MS.gene56439:intron | 30.0% | |
| ATTATGAAAAGATCTCCTTC+TGG | - | chr4.3:27921581-27921600 | None:intergenic | 30.0% | |
| GTTAATATTGGACATTCACA+TGG | + | chr4.3:27921860-27921879 | MS.gene56439:CDS | 30.0% | |
| GTTCTTAAAGAATGCAATGT+TGG | + | chr4.3:27922622-27922641 | MS.gene56439:CDS | 30.0% | |
| TACCAAACGTATTACTAACA+CGG | - | chr4.3:27922535-27922554 | None:intergenic | 30.0% | |
| TTATGAAAAGATCTCCTTCT+GGG | - | chr4.3:27921580-27921599 | None:intergenic | 30.0% | |
| ! | TCTTTTAATCTACATGGCTT+TGG | + | chr4.3:27922769-27922788 | MS.gene56439:CDS | 30.0% |
| !! | AATATGGCTATGAGTTTTAG+AGG | - | chr4.3:27921488-27921507 | None:intergenic | 30.0% |
| !! | GAGATTGGTGATGTTAATAT+TGG | + | chr4.3:27921848-27921867 | MS.gene56439:CDS | 30.0% |
| !!! | TTTTTTAACATCACAAGCAC+TGG | + | chr4.3:27921409-27921428 | MS.gene56439:CDS | 30.0% |
| AATATTGGACATTCACATGG+TGG | + | chr4.3:27921863-27921882 | MS.gene56439:CDS | 35.0% | |
| AATGTCTCTCATGGCTAAAT+GGG | + | chr4.3:27922889-27922908 | MS.gene56439:CDS | 35.0% | |
| AATTCATCGAAGGGTAATGT+AGG | + | chr4.3:27922168-27922187 | MS.gene56439:intron | 35.0% | |
| ACCAAACGTATTACTAACAC+GGG | - | chr4.3:27922534-27922553 | None:intergenic | 35.0% | |
| AGAAGAAGCTGAAATAAGGA+CGG | + | chr4.3:27922074-27922093 | MS.gene56439:intron | 35.0% | |
| ATCTTAGCAACTAGTGTGAT+TGG | + | chr4.3:27921512-27921531 | MS.gene56439:CDS | 35.0% | |
| ATGTCTTCGATTAGAGGAAT+CGG | - | chr4.3:27922507-27922526 | None:intergenic | 35.0% | |
| ATTACCCTTCGATGAATTGA+AGG | - | chr4.3:27922166-27922185 | None:intergenic | 35.0% | |
| ATTGTTTGGATGAGAAACCA+TGG | + | chr4.3:27921684-27921703 | MS.gene56439:CDS | 35.0% | |
| CATAATCGTGAAATGTTTCG+CGG | + | chr4.3:27921595-27921614 | MS.gene56439:CDS | 35.0% | |
| GATTACCTTCAATTCATCGA+AGG | + | chr4.3:27922158-27922177 | MS.gene56439:intron | 35.0% | |
| GTAGTTCATTCAGTGGTAAT+AGG | + | chr4.3:27922267-27922286 | MS.gene56439:CDS | 35.0% | |
| TATTGAGCACGTATTATTGG+AGG | - | chr4.3:27922307-27922326 | None:intergenic | 35.0% | |
| TCTTATGTAGCAGTATTCCT+TGG | + | chr4.3:27922857-27922876 | MS.gene56439:CDS | 35.0% | |
| TCTTGAACCCATGATGAATA+TGG | - | chr4.3:27921892-27921911 | None:intergenic | 35.0% | |
| TGATGCATTAAGCAATCCAA+CGG | - | chr4.3:27922741-27922760 | None:intergenic | 35.0% | |
| TGCTTCCATCAAATGTTTGA+AGG | + | chr4.3:27922348-27922367 | MS.gene56439:CDS | 35.0% | |
| TGGAATTGTAGTTCATTCAG+TGG | + | chr4.3:27922260-27922279 | MS.gene56439:CDS | 35.0% | |
| TTCATGAGTAAAAGGATGCA+GGG | + | chr4.3:27922812-27922831 | MS.gene56439:CDS | 35.0% | |
| TTCTCAATTACAACACCTCT+TGG | + | chr4.3:27922653-27922672 | MS.gene56439:CDS | 35.0% | |
| TTTCATGAGTAAAAGGATGC+AGG | + | chr4.3:27922811-27922830 | MS.gene56439:CDS | 35.0% | |
| ! | AAACATTTGATGGAAGCACA+TGG | - | chr4.3:27922346-27922365 | None:intergenic | 35.0% |
| ! | CATCAAATGTTTGAAGGCAT+GGG | + | chr4.3:27922354-27922373 | MS.gene56439:CDS | 35.0% |
| !! | CTGCTGATTTCATGAGTAAA+AGG | + | chr4.3:27922804-27922823 | MS.gene56439:CDS | 35.0% |
| !! | TTTGTTGTTGCAACTGTTTG+TGG | - | chr4.3:27921453-27921472 | None:intergenic | 35.0% |
| !!! | TGCTGGTCTTTTAATCTACA+TGG | + | chr4.3:27922763-27922782 | MS.gene56439:CDS | 35.0% |
| ACAACATCTCGTACGAATCA+GGG | - | chr4.3:27921658-27921677 | None:intergenic | 40.0% | |
| ACACCTCTTGGAATTGCAAT+AGG | + | chr4.3:27922665-27922684 | MS.gene56439:CDS | 40.0% | |
| ACCCGTGTTAGTAATACGTT+TGG | + | chr4.3:27922530-27922549 | MS.gene56439:intron | 40.0% | |
| AGTCCTATTGCAATTCCAAG+AGG | - | chr4.3:27922671-27922690 | None:intergenic | 40.0% | |
| AGTGGTAATAGGACTTGGAA+TGG | + | chr4.3:27922278-27922297 | MS.gene56439:CDS | 40.0% | |
| CATTCAGTGGTAATAGGACT+TGG | + | chr4.3:27922273-27922292 | MS.gene56439:CDS | 40.0% | |
| CCATCAAATGTTTGAAGGCA+TGG | + | chr4.3:27922353-27922372 | MS.gene56439:CDS | 40.0% | |
| CCATGCCTTCAAACATTTGA+TGG | - | chr4.3:27922356-27922375 | None:intergenic | 40.0% | |
| CTCACAGTATCATGGTAGTA+AGG | - | chr4.3:27922199-27922218 | None:intergenic | 40.0% | |
| CTCTTTGTAACTCGTTGACA+TGG | - | chr4.3:27922696-27922715 | None:intergenic | 40.0% | |
| GAATGTCTCTCATGGCTAAA+TGG | + | chr4.3:27922888-27922907 | MS.gene56439:CDS | 40.0% | |
| GATGTTGTGGAGTGATTGTT+TGG | + | chr4.3:27921670-27921689 | MS.gene56439:CDS | 40.0% | |
| GGTAACATGTCTTCGATTAG+AGG | - | chr4.3:27922513-27922532 | None:intergenic | 40.0% | |
| GTGGTAATAGGACTTGGAAT+GGG | + | chr4.3:27922279-27922298 | MS.gene56439:CDS | 40.0% | |
| GTGGTCACCATATTCATCAT+GGG | + | chr4.3:27921882-27921901 | MS.gene56439:CDS | 40.0% | |
| TACAGTAAGAAGGGTAAGAG+TGG | + | chr4.3:27921788-27921807 | MS.gene56439:CDS | 40.0% | |
| TTGCTTAATGCATCATCTGC+TGG | + | chr4.3:27922746-27922765 | MS.gene56439:CDS | 40.0% | |
| !! | TAGAGGAATCGGTGTTGAAT+AGG | - | chr4.3:27922496-27922515 | None:intergenic | 40.0% |
| ACGCGATAACGTAGAAGTTG+TGG | - | chr4.3:27921932-27921951 | None:intergenic | 45.0% | |
| ACTTCTACGTTATCGCGTAG+TGG | + | chr4.3:27921934-27921953 | MS.gene56439:CDS | 45.0% | |
| ATAGCCACAAGTCCCGAAAA+GGG | - | chr4.3:27921719-27921738 | None:intergenic | 45.0% | |
| CACAACATCTCGTACGAATC+AGG | - | chr4.3:27921659-27921678 | None:intergenic | 45.0% | |
| CACACTCACTCACAGTATCA+TGG | - | chr4.3:27922207-27922226 | None:intergenic | 45.0% | |
| CTGGTATTATTCTTGGGACC+GGG | + | chr4.3:27921618-27921637 | MS.gene56439:CDS | 45.0% | |
| GATTGGTGTGTGTTTACCCT+TGG | + | chr4.3:27921529-27921548 | MS.gene56439:CDS | 45.0% | |
| GCTGGTATTATTCTTGGGAC+CGG | + | chr4.3:27921617-27921636 | MS.gene56439:CDS | 45.0% | |
| GGTGGAGATGATCAAGAGAT+TGG | + | chr4.3:27921833-27921852 | MS.gene56439:CDS | 45.0% | |
| GGTGGTCACCATATTCATCA+TGG | + | chr4.3:27921881-27921900 | MS.gene56439:CDS | 45.0% | |
| GTTGTGATTCCAGAGAGCAA+TGG | + | chr4.3:27921812-27921831 | MS.gene56439:CDS | 45.0% | |
| TCGCGGCTGGTATTATTCTT+GGG | + | chr4.3:27921612-27921631 | MS.gene56439:CDS | 45.0% | |
| TTCGCGGCTGGTATTATTCT+TGG | + | chr4.3:27921611-27921630 | MS.gene56439:CDS | 45.0% | |
| ! | ATGTTTGAAGGCATGGGTCT+TGG | + | chr4.3:27922360-27922379 | MS.gene56439:CDS | 45.0% |
| ! | CTGATTCGTACGAGATGTTG+TGG | + | chr4.3:27921657-27921676 | MS.gene56439:CDS | 45.0% |
| ACGTTATCGCGTAGTGGTCA+TGG | + | chr4.3:27921940-27921959 | MS.gene56439:CDS | 50.0% | |
| ACTTGTGGCTATGTTCTCCG+CGG | + | chr4.3:27921727-27921746 | MS.gene56439:CDS | 50.0% | |
| ATCGTGAAATGTTTCGCGGC+TGG | + | chr4.3:27921599-27921618 | MS.gene56439:CDS | 50.0% | |
| CATAGCCACAAGTCCCGAAA+AGG | - | chr4.3:27921720-27921739 | None:intergenic | 50.0% | |
| CCAACGGTGATTAGTGCTAC+TGG | - | chr4.3:27922725-27922744 | None:intergenic | 50.0% | |
| CCAGTAGCACTAATCACCGT+TGG | + | chr4.3:27922722-27922741 | MS.gene56439:CDS | 50.0% | |
| GACCATCATTGTGATCACCG+CGG | - | chr4.3:27921747-27921766 | None:intergenic | 50.0% | |
| GTGATTCCAGAGAGCAATGG+TGG | + | chr4.3:27921815-27921834 | MS.gene56439:CDS | 50.0% | |
| TCATCTCCACCATTGCTCTC+TGG | - | chr4.3:27921824-27921843 | None:intergenic | 50.0% | |
| TCTCCTTCTGGGCTTAAAGC+CGG | - | chr4.3:27921569-27921588 | None:intergenic | 50.0% | |
| TGCTGGTGGAATGTCTCTCA+TGG | + | chr4.3:27922880-27922899 | MS.gene56439:CDS | 50.0% | |
| ! | AGGGAGTACATGCATGAACC+CGG | - | chr4.3:27921639-27921658 | None:intergenic | 50.0% |
| ! | ATGGCGCGAGTTTCCCTTTT+CGG | + | chr4.3:27921703-27921722 | MS.gene56439:CDS | 50.0% |
| ! | GTAGCAGTATTCCTTGGTGC+TGG | + | chr4.3:27922863-27922882 | MS.gene56439:CDS | 50.0% |
| ! | TTTGAAGGCATGGGTCTTGG+TGG | + | chr4.3:27922363-27922382 | MS.gene56439:CDS | 50.0% |
| !! | GTTTCCCTTTTCGGGACTTG+TGG | + | chr4.3:27921712-27921731 | MS.gene56439:CDS | 50.0% |
| CTCCGCGGTGATCACAATGA+TGG | + | chr4.3:27921742-27921761 | MS.gene56439:CDS | 55.0% | |
| CTCCTTCTGGGCTTAAAGCC+GGG | - | chr4.3:27921568-27921587 | None:intergenic | 55.0% | |
| CTTGGCGACACGTTCAATCC+CGG | + | chr4.3:27921547-27921566 | MS.gene56439:CDS | 55.0% | |
| GAAAAGGGAAACTCGCGCCA+TGG | - | chr4.3:27921704-27921723 | None:intergenic | 55.0% | |
| GAGACATTCCACCAGCACCA+AGG | - | chr4.3:27922877-27922896 | None:intergenic | 55.0% | |
| GGGATTGAACGTGTCGCCAA+GGG | - | chr4.3:27921548-27921567 | None:intergenic | 55.0% | |
| ! | TCTTGGTGGCTGCATTCTCC+AGG | + | chr4.3:27922377-27922396 | MS.gene56439:CDS | 55.0% |
| ! | TGGCGCGAGTTTCCCTTTTC+GGG | + | chr4.3:27921704-27921723 | MS.gene56439:CDS | 55.0% |
| !! | ATCCCGGCTTTAAGCCCAGA+AGG | + | chr4.3:27921563-27921582 | MS.gene56439:CDS | 55.0% |
| !! | GCAGTATTCCTTGGTGCTGG+TGG | + | chr4.3:27922866-27922885 | MS.gene56439:CDS | 55.0% |
| CGGGATTGAACGTGTCGCCA+AGG | - | chr4.3:27921549-27921568 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 27921353 | 27922916 | 27921353 | ID=MS.gene56439 |
| chr4.3 | mRNA | 27921353 | 27922916 | 27921353 | ID=MS.gene56439.t1;Parent=MS.gene56439 |
| chr4.3 | exon | 27921353 | 27921961 | 27921353 | ID=MS.gene56439.t1.exon1;Parent=MS.gene56439.t1 |
| chr4.3 | CDS | 27921353 | 27921961 | 27921353 | ID=cds.MS.gene56439.t1;Parent=MS.gene56439.t1 |
| chr4.3 | exon | 27922249 | 27922398 | 27922249 | ID=MS.gene56439.t1.exon2;Parent=MS.gene56439.t1 |
| chr4.3 | CDS | 27922249 | 27922398 | 27922249 | ID=cds.MS.gene56439.t1;Parent=MS.gene56439.t1 |
| chr4.3 | exon | 27922611 | 27922916 | 27922611 | ID=MS.gene56439.t1.exon3;Parent=MS.gene56439.t1 |
| chr4.3 | CDS | 27922611 | 27922916 | 27922611 | ID=cds.MS.gene56439.t1;Parent=MS.gene56439.t1 |
| Gene Sequence |
| Protein sequence |
