Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57428.t1 | XP_003630050.1 | 96.6 | 703 | 17 | 5 | 1 | 700 | 1 | 699 | 0.00E+00 | 1281.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57428.t1 | Q93YU8 | 27.2 | 368 | 226 | 6 | 268 | 631 | 353 | 682 | 8.5e-27 | 123.6 |
| MS.gene57428.t1 | Q93YU8 | 37.2 | 86 | 48 | 2 | 1 | 86 | 1 | 80 | 6.4e-06 | 54.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57428.t1 | G7LAC7 | 96.6 | 703 | 17 | 5 | 1 | 700 | 1 | 699 | 0.0e+00 | 1281.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049190 | MS.gene57428 | 0.801304 | 9.59E-49 | -1.69E-46 |
| MS.gene049418 | MS.gene57428 | 0.836753 | 7.78E-57 | -1.69E-46 |
| MS.gene050310 | MS.gene57428 | 0.804862 | 1.76E-49 | -1.69E-46 |
| MS.gene050901 | MS.gene57428 | 0.837946 | 3.85E-57 | -1.69E-46 |
| MS.gene051263 | MS.gene57428 | 0.863657 | 2.13E-64 | -1.69E-46 |
| MS.gene051478 | MS.gene57428 | 0.814378 | 1.59E-51 | -1.69E-46 |
| MS.gene05157 | MS.gene57428 | 0.814886 | 1.23E-51 | -1.69E-46 |
| MS.gene051648 | MS.gene57428 | 0.800768 | 1.23E-48 | -1.69E-46 |
| MS.gene055537 | MS.gene57428 | 0.809081 | 2.26E-50 | -1.69E-46 |
| MS.gene056169 | MS.gene57428 | 0.831226 | 1.88E-55 | -1.69E-46 |
| MS.gene056228 | MS.gene57428 | 0.833783 | 4.37E-56 | -1.69E-46 |
| MS.gene057004 | MS.gene57428 | 0.807084 | 6.01E-50 | -1.69E-46 |
| MS.gene057082 | MS.gene57428 | 0.833864 | 4.18E-56 | -1.69E-46 |
| MS.gene058197 | MS.gene57428 | 0.827586 | 1.44E-54 | -1.69E-46 |
| MS.gene058198 | MS.gene57428 | 0.826883 | 2.12E-54 | -1.69E-46 |
| MS.gene05894 | MS.gene57428 | 0.851021 | 1.16E-60 | -1.69E-46 |
| MS.gene059300 | MS.gene57428 | 0.826503 | 2.62E-54 | -1.69E-46 |
| MS.gene060355 | MS.gene57428 | 0.80659 | 7.64E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57428.t1 | MTR_8g091250 | 96.170 | 705 | 16 | 6 | 1 | 700 | 1 | 699 | 0.0 | 1377 |
| MS.gene57428.t1 | MTR_5g087740 | 35.484 | 775 | 376 | 22 | 1 | 690 | 1 | 736 | 1.59e-119 | 375 |
| MS.gene57428.t1 | MTR_3g078830 | 40.173 | 463 | 245 | 10 | 250 | 690 | 308 | 760 | 4.16e-95 | 311 |
| MS.gene57428.t1 | MTR_3g078830 | 45.570 | 79 | 42 | 1 | 1 | 78 | 1 | 79 | 3.17e-14 | 77.0 |
| MS.gene57428.t1 | MTR_4g127620 | 34.554 | 437 | 236 | 11 | 264 | 686 | 329 | 729 | 1.01e-59 | 214 |
| MS.gene57428.t1 | MTR_4g127620 | 36.290 | 124 | 73 | 2 | 1 | 124 | 1 | 118 | 3.83e-11 | 67.0 |
| MS.gene57428.t1 | MTR_2g036920 | 39.088 | 307 | 150 | 7 | 264 | 557 | 497 | 779 | 2.88e-49 | 186 |
| MS.gene57428.t1 | MTR_2g036920 | 35.150 | 367 | 201 | 7 | 264 | 617 | 468 | 810 | 3.26e-49 | 186 |
| MS.gene57428.t1 | MTR_5g098980 | 29.680 | 438 | 235 | 8 | 273 | 675 | 357 | 756 | 6.14e-48 | 181 |
| MS.gene57428.t1 | MTR_3g115120 | 24.211 | 760 | 419 | 23 | 1 | 681 | 1 | 682 | 8.08e-48 | 180 |
| MS.gene57428.t1 | MTR_3g088190 | 31.856 | 361 | 221 | 4 | 267 | 624 | 451 | 789 | 8.63e-48 | 182 |
| MS.gene57428.t1 | MTR_3g088190 | 45.161 | 62 | 34 | 0 | 1 | 62 | 1 | 62 | 3.06e-11 | 67.4 |
| MS.gene57428.t1 | MTR_1g107440 | 90.588 | 85 | 8 | 0 | 381 | 465 | 1 | 85 | 1.81e-45 | 158 |
| MS.gene57428.t1 | MTR_5g022530 | 29.891 | 368 | 223 | 7 | 265 | 630 | 199 | 533 | 1.65e-41 | 161 |
| MS.gene57428.t1 | MTR_2g102050 | 29.444 | 360 | 210 | 8 | 271 | 625 | 321 | 641 | 9.26e-39 | 154 |
| MS.gene57428.t1 | MTR_3g096950 | 29.138 | 429 | 252 | 12 | 197 | 624 | 288 | 665 | 7.84e-36 | 145 |
| MS.gene57428.t1 | MTR_3g109450 | 28.492 | 358 | 211 | 9 | 272 | 625 | 280 | 596 | 1.23e-34 | 141 |
| MS.gene57428.t1 | MTR_8g006850 | 25.991 | 681 | 379 | 26 | 1 | 630 | 1 | 607 | 9.89e-32 | 132 |
| MS.gene57428.t1 | MTR_4g012430 | 24.860 | 358 | 223 | 7 | 271 | 625 | 124 | 438 | 1.03e-28 | 121 |
| MS.gene57428.t1 | MTR_2g048360 | 32.389 | 247 | 149 | 7 | 384 | 624 | 293 | 527 | 1.62e-25 | 112 |
| MS.gene57428.t1 | MTR_7g081705 | 29.577 | 284 | 174 | 8 | 355 | 631 | 465 | 729 | 1.74e-25 | 112 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57428.t1 | AT4G39790 | 53.064 | 718 | 240 | 21 | 1 | 691 | 9 | 656 | 0.0 | 635 |
| MS.gene57428.t1 | AT2G27090 | 41.995 | 431 | 233 | 6 | 270 | 689 | 307 | 731 | 1.94e-100 | 325 |
| MS.gene57428.t1 | AT2G27090 | 55.263 | 76 | 33 | 1 | 1 | 75 | 1 | 76 | 5.17e-17 | 85.9 |
| MS.gene57428.t1 | AT2G27090 | 41.995 | 431 | 233 | 6 | 270 | 689 | 307 | 731 | 1.94e-100 | 325 |
| MS.gene57428.t1 | AT2G27090 | 55.263 | 76 | 33 | 1 | 1 | 75 | 1 | 76 | 5.17e-17 | 85.9 |
| MS.gene57428.t1 | AT1G21740 | 37.057 | 367 | 194 | 9 | 262 | 620 | 489 | 826 | 2.71e-59 | 216 |
| MS.gene57428.t1 | AT4G30130 | 28.633 | 695 | 367 | 19 | 1 | 620 | 1 | 641 | 9.24e-59 | 211 |
| MS.gene57428.t1 | AT4G30130 | 28.633 | 695 | 367 | 19 | 1 | 620 | 1 | 641 | 9.24e-59 | 211 |
| MS.gene57428.t1 | AT1G77500 | 36.011 | 361 | 196 | 7 | 267 | 620 | 446 | 778 | 1.77e-58 | 213 |
| MS.gene57428.t1 | AT4G35240 | 30.474 | 443 | 234 | 10 | 277 | 682 | 426 | 831 | 1.52e-52 | 195 |
| MS.gene57428.t1 | AT4G35240 | 30.474 | 443 | 234 | 10 | 277 | 682 | 426 | 831 | 1.52e-52 | 195 |
| MS.gene57428.t1 | AT4G35240 | 30.474 | 443 | 234 | 10 | 277 | 682 | 426 | 831 | 2.47e-52 | 195 |
| MS.gene57428.t1 | AT4G35240 | 30.474 | 443 | 234 | 10 | 277 | 682 | 426 | 831 | 2.47e-52 | 195 |
| MS.gene57428.t1 | AT2G17110 | 31.674 | 442 | 230 | 9 | 277 | 683 | 316 | 720 | 2.72e-51 | 191 |
| MS.gene57428.t1 | AT2G19090 | 33.505 | 388 | 208 | 8 | 252 | 617 | 362 | 721 | 1.52e-43 | 169 |
| MS.gene57428.t1 | AT1G52320 | 31.111 | 360 | 202 | 10 | 266 | 621 | 23 | 340 | 2.71e-42 | 160 |
| MS.gene57428.t1 | AT1G52320 | 31.111 | 360 | 202 | 10 | 266 | 621 | 23 | 340 | 2.71e-42 | 160 |
| MS.gene57428.t1 | AT3G51290 | 30.769 | 364 | 218 | 8 | 265 | 627 | 195 | 525 | 2.95e-42 | 163 |
| MS.gene57428.t1 | AT3G51290 | 30.220 | 364 | 220 | 8 | 265 | 627 | 195 | 525 | 6.61e-42 | 163 |
| MS.gene57428.t1 | AT1G52320 | 31.111 | 360 | 202 | 10 | 266 | 621 | 349 | 666 | 1.90e-41 | 162 |
| MS.gene57428.t1 | AT1G52320 | 31.111 | 360 | 202 | 10 | 266 | 621 | 349 | 666 | 1.90e-41 | 162 |
| MS.gene57428.t1 | AT1G52320 | 31.111 | 360 | 202 | 10 | 266 | 621 | 326 | 643 | 2.00e-41 | 162 |
| MS.gene57428.t1 | AT3G51290 | 29.945 | 364 | 215 | 9 | 265 | 627 | 195 | 519 | 1.88e-37 | 149 |
| MS.gene57428.t1 | AT1G20530 | 27.735 | 393 | 232 | 9 | 249 | 638 | 212 | 555 | 1.04e-34 | 140 |
| MS.gene57428.t1 | AT4G30130 | 39.706 | 204 | 103 | 2 | 264 | 467 | 297 | 480 | 1.79e-30 | 127 |
| MS.gene57428.t1 | AT4G30130 | 28.333 | 180 | 94 | 5 | 1 | 158 | 1 | 167 | 2.16e-12 | 70.5 |
| MS.gene57428.t1 | AT4G30130 | 39.706 | 204 | 103 | 2 | 264 | 467 | 297 | 480 | 1.79e-30 | 127 |
| MS.gene57428.t1 | AT4G30130 | 28.333 | 180 | 94 | 5 | 1 | 158 | 1 | 167 | 2.16e-12 | 70.5 |
| MS.gene57428.t1 | AT5G25590 | 28.099 | 363 | 211 | 10 | 271 | 625 | 330 | 650 | 1.90e-30 | 128 |
| MS.gene57428.t1 | AT1G02110 | 27.717 | 368 | 213 | 10 | 270 | 630 | 273 | 594 | 3.39e-28 | 121 |
| MS.gene57428.t1 | AT2G34670 | 30.962 | 239 | 155 | 3 | 384 | 620 | 333 | 563 | 1.61e-27 | 119 |
| MS.gene57428.t1 | AT3G60320 | 27.446 | 368 | 225 | 8 | 268 | 631 | 353 | 682 | 1.84e-26 | 115 |
| MS.gene57428.t1 | AT5G54480 | 30.660 | 212 | 133 | 4 | 382 | 592 | 394 | 592 | 1.30e-24 | 110 |
| MS.gene57428.t1 | AT2G34670 | 30.734 | 218 | 141 | 3 | 384 | 599 | 333 | 542 | 1.33e-22 | 102 |
Find 136 sgRNAs with CRISPR-Local
Find 272 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTCCACCTCCACCTGATTT+AGG | 0.188041 | 4.3:+9943160 | MS.gene57428:CDS |
| TTCTCAGCAACATTATTTAA+AGG | 0.197214 | 4.3:-9942977 | None:intergenic |
| CAACGATGCTTCGGAAAATT+TGG | 0.223748 | 4.3:-9946881 | None:intergenic |
| GATAGGGAAGTCGTCTAAAT+TGG | 0.277408 | 4.3:+9943787 | MS.gene57428:intron |
| CTAGAAGAAATCGAGTTATT+TGG | 0.303994 | 4.3:+9946460 | MS.gene57428:CDS |
| TTCATTCGAGCTTCGGAATC+TGG | 0.314092 | 4.3:+9943574 | MS.gene57428:CDS |
| AGAGTTGTATCCGCAACTTC+TGG | 0.320251 | 4.3:+9946107 | MS.gene57428:CDS |
| TCTCTTAGAAATGTTGGTAT+AGG | 0.323214 | 4.3:+9942857 | MS.gene57428:CDS |
| GTAGAAACAGGTGTTGAAAA+AGG | 0.341916 | 4.3:-9943034 | None:intergenic |
| TCTTGGGATTTCTTTGACCC+TGG | 0.346261 | 4.3:+9943187 | MS.gene57428:CDS |
| ACCTGATTTAGGTGCATCTT+GGG | 0.359970 | 4.3:+9943171 | MS.gene57428:CDS |
| CACCTGATTTAGGTGCATCT+TGG | 0.372611 | 4.3:+9943170 | MS.gene57428:CDS |
| TGAAGATGTATGAAGATATC+AGG | 0.386728 | 4.3:+9946902 | MS.gene57428:CDS |
| CTATGCCGTGATTGGTGTGC+TGG | 0.391046 | 4.3:+9946634 | MS.gene57428:CDS |
| ACTGTTACACTTGATGCTTT+TGG | 0.397959 | 4.3:+9943094 | MS.gene57428:CDS |
| GAAGAGTTCTGCATGATTGC+TGG | 0.403935 | 4.3:+9945538 | MS.gene57428:CDS |
| TGAAGCATTGAGTTTATGTA+AGG | 0.411378 | 4.3:+9942760 | MS.gene57428:CDS |
| AAATCTTGATGTGGCTGAAA+AGG | 0.414732 | 4.3:+9943402 | MS.gene57428:CDS |
| AGATGTTTCAAGGCTGTTAG+AGG | 0.416903 | 4.3:+9943600 | MS.gene57428:CDS |
| TTGCTCCTGGTACGTTCCCT+TGG | 0.417781 | 4.3:-9946565 | None:intergenic |
| TCCCTTTGGCTTCAAAATCA+AGG | 0.418316 | 4.3:+9945482 | MS.gene57428:CDS |
| AGTCTTTCTGCGGCAACAAA+CGG | 0.422249 | 4.3:-9943831 | None:intergenic |
| GTCTTTCTGCGGCAACAAAC+GGG | 0.424934 | 4.3:-9943830 | None:intergenic |
| ATTCAATCTCTTAGAAATGT+TGG | 0.425409 | 4.3:+9942851 | MS.gene57428:CDS |
| TAAAACTTACCCTGGAAAAC+AGG | 0.428606 | 4.3:-9943857 | None:intergenic |
| TGATTGGTGTGCTGGGATCC+AGG | 0.432860 | 4.3:+9946642 | MS.gene57428:CDS |
| GTTCTCCCCTCGTCGAGCTC+TGG | 0.440226 | 4.3:+9946594 | MS.gene57428:CDS |
| GTTGTTTCAAGTGGAGTTGA+AGG | 0.443756 | 4.3:+9943310 | MS.gene57428:CDS |
| GCATAGGTTCATTCGAGCTT+CGG | 0.444759 | 4.3:+9943567 | MS.gene57428:CDS |
| ATTTCTCTGCGTGCATCTCC+TGG | 0.446501 | 4.3:-9946424 | None:intergenic |
| AGTTGAAGGTTGCAAACAAT+TGG | 0.447867 | 4.3:+9943324 | MS.gene57428:CDS |
| ATACATCTTCAACGATGCTT+CGG | 0.449747 | 4.3:-9946890 | None:intergenic |
| ATCCTCGTCCAGGATCCCTT+TGG | 0.450789 | 4.3:+9945468 | MS.gene57428:CDS |
| TCCCAAGATGCACCTAAATC+AGG | 0.460107 | 4.3:-9943172 | None:intergenic |
| AGGGATCAGTGGTTACAAAC+TGG | 0.463236 | 4.3:+9943271 | MS.gene57428:CDS |
| TGTCGATCACTTGAGTGCCT+TGG | 0.466505 | 4.3:-9945987 | None:intergenic |
| AAGGGTAACTAGTTTGAGAT+GGG | 0.468402 | 4.3:-9942943 | None:intergenic |
| CTAGTGAGTTCAAAGATTGC+AGG | 0.471719 | 4.3:+9943251 | MS.gene57428:CDS |
| AGGGAAGATATTGATGATAG+TGG | 0.475279 | 4.3:+9945502 | MS.gene57428:CDS |
| GCGGCAACAAACGGGCTGAA+TGG | 0.475599 | 4.3:-9943822 | None:intergenic |
| AAACTCTCACTATCCTCTCC+AGG | 0.476724 | 4.3:-9943205 | None:intergenic |
| AGAATGATATGCCAAGGAAA+TGG | 0.481755 | 4.3:-9946380 | None:intergenic |
| ATGTAACTAACAGTAGAAAC+AGG | 0.481798 | 4.3:-9943046 | None:intergenic |
| GTCGGATCTTCACAATCTGA+TGG | 0.481913 | 4.3:+9946708 | MS.gene57428:CDS |
| AAATAATGTTGCTGAGAATG+AGG | 0.483016 | 4.3:+9942982 | MS.gene57428:CDS |
| ATTGAGAGCTTCCACATATG+AGG | 0.489050 | 4.3:-9946515 | None:intergenic |
| CCTAAATCAGGTGGAGGTGG+AGG | 0.489973 | 4.3:-9943160 | None:intergenic |
| CTCAAGTGATCGACAAGACC+AGG | 0.490823 | 4.3:+9945995 | MS.gene57428:CDS |
| AACACAACAGGAACCTTGCC+AGG | 0.493027 | 4.3:+9946406 | MS.gene57428:CDS |
| TTGCAAATTGATGTCTAAGC+TGG | 0.494038 | 4.3:-9945960 | None:intergenic |
| CCCTTGACAGATTGTATGCA+TGG | 0.498810 | 4.3:+9945575 | MS.gene57428:CDS |
| GAAGGGTAACTAGTTTGAGA+TGG | 0.502033 | 4.3:-9942944 | None:intergenic |
| TATCATTCTAGAAACACAAC+AGG | 0.503423 | 4.3:+9946394 | MS.gene57428:CDS |
| GAGGCAAACAAAATCAAGGT+TGG | 0.504074 | 4.3:+9943619 | MS.gene57428:CDS |
| ACATTATTTAAAGGTGATGA+AGG | 0.505480 | 4.3:-9942968 | None:intergenic |
| TCTGCGTGCATCTCCTGGCA+AGG | 0.512870 | 4.3:-9946419 | None:intergenic |
| GCAATACATCACCATTTCCT+TGG | 0.515910 | 4.3:+9946369 | MS.gene57428:CDS |
| AATCTTGATGTGGCTGAAAA+GGG | 0.516350 | 4.3:+9943403 | MS.gene57428:CDS |
| GCACCAGGTGGTACTGTTGG+TGG | 0.519535 | 4.3:+9943373 | MS.gene57428:CDS |
| CCCTTTGGCTTCAAAATCAA+GGG | 0.522038 | 4.3:+9945483 | MS.gene57428:CDS |
| TGCAGGCTAGTGAATCCATC+AGG | 0.522957 | 4.3:+9945914 | MS.gene57428:intron |
| GCACCTAAATCAGGTGGAGG+TGG | 0.527111 | 4.3:-9943163 | None:intergenic |
| AATCTGGTAGAGATGTTTCA+AGG | 0.529347 | 4.3:+9943590 | MS.gene57428:CDS |
| ATGGCTGGTGCAGATTGGTC+AGG | 0.532640 | 4.3:+9946314 | MS.gene57428:intron |
| GCTGAAAAGGGTGTTGATGT+TGG | 0.534362 | 4.3:+9943415 | MS.gene57428:CDS |
| GAGGCACCAGGTGGTACTGT+TGG | 0.534851 | 4.3:+9943370 | MS.gene57428:CDS |
| CAGATCCTTCACAACTGCCC+TGG | 0.535042 | 4.3:-9946013 | None:intergenic |
| AAAACTCTATGATGAAGTAA+AGG | 0.535638 | 4.3:+9945603 | MS.gene57428:CDS |
| GTGAGACAGTTGGAGGCACC+AGG | 0.540258 | 4.3:+9943358 | MS.gene57428:CDS |
| GATCCTTCAGTTGTTTCAAG+TGG | 0.540416 | 4.3:+9943301 | MS.gene57428:CDS |
| ATCTGTCAAGGGTGGACGAA+TGG | 0.540817 | 4.3:-9945564 | None:intergenic |
| GGTGCAGATTGGTCAGGATG+TGG | 0.543685 | 4.3:+9946320 | MS.gene57428:intron |
| TTTAAAGGTGATGAAGGAGA+AGG | 0.544934 | 4.3:-9942962 | None:intergenic |
| AGCCAAAGGGATCCTGGACG+AGG | 0.548609 | 4.3:-9945470 | None:intergenic |
| AGGGTAACTAGTTTGAGATG+GGG | 0.549838 | 4.3:-9942942 | None:intergenic |
| TTAAAGGTGATGAAGGAGAA+GGG | 0.551244 | 4.3:-9942961 | None:intergenic |
| GGTTGCAAACAATTGGATGA+TGG | 0.552751 | 4.3:+9943331 | MS.gene57428:CDS |
| CAAGACCAGGGCAGTTGTGA+AGG | 0.553295 | 4.3:+9946008 | MS.gene57428:CDS |
| TGGAAGATCAAGTTCAAAGA+AGG | 0.553913 | 4.3:+9943435 | MS.gene57428:CDS |
| TAACAGCCACACCTCATATG+TGG | 0.556807 | 4.3:+9946504 | MS.gene57428:CDS |
| TCATATGTGGAAGCTCTCAA+TGG | 0.556987 | 4.3:+9946517 | MS.gene57428:CDS |
| TATGCCGTGATTGGTGTGCT+GGG | 0.557768 | 4.3:+9946635 | MS.gene57428:CDS |
| GTTCTTCAGAGGGTAAAGCC+TGG | 0.558364 | 4.3:-9946660 | None:intergenic |
| GTTAGAGGCAAACAAAATCA+AGG | 0.561899 | 4.3:+9943615 | MS.gene57428:CDS |
| AGAGCTCGACGAGGGGAGAA+CGG | 0.563598 | 4.3:-9946592 | None:intergenic |
| AATTATTAGTTGGAAAAGGA+CGG | 0.568108 | 4.3:+9945432 | MS.gene57428:CDS |
| CCCATGCATACAATCTGTCA+AGG | 0.568925 | 4.3:-9945576 | None:intergenic |
| AAAGGACTTTCATTATGCAA+AGG | 0.572304 | 4.3:-9943016 | None:intergenic |
| TCGATCATAGACCTTCCTGA+TGG | 0.573804 | 4.3:-9945929 | None:intergenic |
| GTTAGTTACATGAGATCAAG+TGG | 0.575677 | 4.3:+9943058 | MS.gene57428:CDS |
| TGCATCACTAAGTTCTTCAG+AGG | 0.575975 | 4.3:-9946671 | None:intergenic |
| ATCAAGTTCAAAGAAGGAGG+AGG | 0.577099 | 4.3:+9943441 | MS.gene57428:CDS |
| AAATGTATGTGCAGAAAGAG+AGG | 0.582813 | 4.3:+9943483 | MS.gene57428:CDS |
| TCAAAGATTGCAGGGATCAG+TGG | 0.583599 | 4.3:+9943260 | MS.gene57428:CDS |
| GGTCAGTCGATCAAGAACCT+TGG | 0.587010 | 4.3:-9946860 | None:intergenic |
| TGATGGAAATGTGAGACAGT+TGG | 0.589991 | 4.3:+9943348 | MS.gene57428:CDS |
| TGGAGCCAGAGCTCGACGAG+GGG | 0.590546 | 4.3:-9946599 | None:intergenic |
| GGATTTCTTTGACCCTGGAG+AGG | 0.591300 | 4.3:+9943192 | MS.gene57428:CDS |
| GGATCCCAGCACACCAATCA+CGG | 0.597262 | 4.3:-9946639 | None:intergenic |
| CACGCAGAGAAATAATGACT+CGG | 0.598054 | 4.3:+9946434 | MS.gene57428:CDS |
| ACTCCACTTGAAACAACTGA+AGG | 0.600121 | 4.3:-9943304 | None:intergenic |
| CAACTTCTGGAATTAACAGA+GGG | 0.600751 | 4.3:+9946120 | MS.gene57428:CDS |
| AACTCTCACTATCCTCTCCA+GGG | 0.602519 | 4.3:-9943204 | None:intergenic |
| TAGTGAGTTCAAAGATTGCA+GGG | 0.604008 | 4.3:+9943252 | MS.gene57428:CDS |
| GTTTCTAGAATGATATGCCA+AGG | 0.606062 | 4.3:-9946386 | None:intergenic |
| GTGGAGCCAGAGCTCGACGA+GGG | 0.610750 | 4.3:-9946600 | None:intergenic |
| CTGTGAGTGATGAACTCTGA+AGG | 0.613324 | 4.3:-9943508 | None:intergenic |
| AAGATCAAGTTCAAAGAAGG+AGG | 0.618527 | 4.3:+9943438 | MS.gene57428:CDS |
| CCTTGACAGATTGTATGCAT+GGG | 0.619343 | 4.3:+9945576 | MS.gene57428:CDS |
| GATGCACCTAAATCAGGTGG+AGG | 0.625726 | 4.3:-9943166 | None:intergenic |
| TGCATACAATCTGTCAAGGG+TGG | 0.626878 | 4.3:-9945572 | None:intergenic |
| ATGTGGAAGCTCTCAATGGT+TGG | 0.626950 | 4.3:+9946521 | MS.gene57428:CDS |
| GCATCACTAAGTTCTTCAGA+GGG | 0.627690 | 4.3:-9946670 | None:intergenic |
| CAAGATGCACCTAAATCAGG+TGG | 0.629553 | 4.3:-9943169 | None:intergenic |
| CAGATTGGTCAGGATGTGGA+AGG | 0.631108 | 4.3:+9946324 | MS.gene57428:intron |
| TCTGCACTCGCGAATTAGAG+TGG | 0.639191 | 4.3:+9946032 | MS.gene57428:CDS |
| GGCTAGTGAATCCATCAGGA+AGG | 0.642992 | 4.3:+9945918 | MS.gene57428:intron |
| TCTGTTAATTCCAGAAGTTG+CGG | 0.644448 | 4.3:-9946117 | None:intergenic |
| GCATAAAGGATATAGAGCAT+AGG | 0.644705 | 4.3:+9943551 | MS.gene57428:CDS |
| CCATGCATACAATCTGTCAA+GGG | 0.647379 | 4.3:-9945575 | None:intergenic |
| TGTACATGCAAGTTTAACCA+AGG | 0.665329 | 4.3:+9946843 | MS.gene57428:CDS |
| TCACCACCAACAGTACCACC+TGG | 0.666374 | 4.3:-9943376 | None:intergenic |
| CATCAATTTGCAAAAGACCA+AGG | 0.673397 | 4.3:+9945970 | MS.gene57428:CDS |
| GAAGGAGGAGGAGAAGAACA+TGG | 0.678950 | 4.3:+9943453 | MS.gene57428:CDS |
| AAACAGGTGAAGTCTTTCTG+CGG | 0.683062 | 4.3:-9943841 | None:intergenic |
| TGGAAATGTGAGACAGTTGG+AGG | 0.684589 | 4.3:+9943351 | MS.gene57428:CDS |
| TGGTGACATAAATCTTGATG+TGG | 0.685432 | 4.3:+9943393 | MS.gene57428:CDS |
| ATCAAAACTAATGAAGACAG+CGG | 0.696867 | 4.3:+9946796 | MS.gene57428:CDS |
| GCAACTTCTGGAATTAACAG+AGG | 0.697401 | 4.3:+9946119 | MS.gene57428:CDS |
| GAGCTTCCACATATGAGGTG+TGG | 0.703175 | 4.3:-9946510 | None:intergenic |
| TCAAGTGATCGACAAGACCA+GGG | 0.705692 | 4.3:+9945996 | MS.gene57428:CDS |
| AAAACTAATGAAGACAGCGG+AGG | 0.716696 | 4.3:+9946799 | MS.gene57428:CDS |
| AGACAGTTGGAGGCACCAGG+TGG | 0.721500 | 4.3:+9943361 | MS.gene57428:CDS |
| GGTGGAGCCAGAGCTCGACG+AGG | 0.727010 | 4.3:-9946601 | None:intergenic |
| AGGTGGAGGAGAAAACACAT+TGG | 0.737795 | 4.3:-9943146 | None:intergenic |
| AACTTCTGGAATTAACAGAG+GGG | 0.764599 | 4.3:+9946121 | MS.gene57428:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAACTAATATCATAAAAAA+GGG | + | chr4.3:9945627-9945646 | MS.gene57428:intron | 10.0% |
| !! | TATAACTAATATCATAAAAA+AGG | + | chr4.3:9945626-9945645 | MS.gene57428:intron | 10.0% |
| !! | AAAAAATTATTAGTTGGAAA+AGG | + | chr4.3:9945428-9945447 | MS.gene57428:CDS | 15.0% |
| !! | AAACAAAAACAACAAAAATA+AGG | - | chr4.3:9944886-9944905 | None:intergenic | 15.0% |
| !! | AAACATATATGTAATGTTTA+AGG | - | chr4.3:9943943-9943962 | None:intergenic | 15.0% |
| !! | TAAAAGAATTGAAAAAATGA+GGG | + | chr4.3:9946080-9946099 | MS.gene57428:CDS | 15.0% |
| !! | TAACTAATATCATAAAAAAG+GGG | + | chr4.3:9945628-9945647 | MS.gene57428:intron | 15.0% |
| !!! | TATAACTACTATTTGATTTA+TGG | + | chr4.3:9946246-9946265 | MS.gene57428:intron | 15.0% |
| !!! | TTTGACTTGAAATATTAATA+CGG | + | chr4.3:9945368-9945387 | MS.gene57428:intron | 15.0% |
| !!! | TTTTTGTTTTTATGAAATAG+TGG | + | chr4.3:9944897-9944916 | MS.gene57428:intron | 15.0% |
| !! | AACTAAATACTCATGTAAAT+TGG | - | chr4.3:9945732-9945751 | None:intergenic | 20.0% |
| !! | AAGGCTAATAAAGAAAAAAA+TGG | + | chr4.3:9944339-9944358 | MS.gene57428:intron | 20.0% |
| !! | ACATTACATATATGTTTGTT+TGG | + | chr4.3:9943946-9943965 | MS.gene57428:intron | 20.0% |
| !! | ACTATTGAAACTATGAAAAT+TGG | - | chr4.3:9945860-9945879 | None:intergenic | 20.0% |
| !! | CATTACATATATGTTTGTTT+GGG | + | chr4.3:9943947-9943966 | MS.gene57428:intron | 20.0% |
| !! | CTAAAAGAATTGAAAAAATG+AGG | + | chr4.3:9946079-9946098 | MS.gene57428:CDS | 20.0% |
| !! | CTGTACAAAAAATTATTAGT+TGG | + | chr4.3:9945422-9945441 | MS.gene57428:CDS | 20.0% |
| !! | CTGTTAAACAAAAAAATAAC+AGG | - | chr4.3:9944696-9944715 | None:intergenic | 20.0% |
| !! | TTTCTCTTAAAATGAAATAG+CGG | - | chr4.3:9944541-9944560 | None:intergenic | 20.0% |
| !!! | AAACATGAATGATTTTCATT+TGG | + | chr4.3:9944097-9944116 | MS.gene57428:intron | 20.0% |
| !!! | AAGAAAAAGTTTTATTAAGG+TGG | + | chr4.3:9942784-9942803 | MS.gene57428:CDS | 20.0% |
| !!! | ATGATTTTCATTTGGAATTT+TGG | + | chr4.3:9944105-9944124 | MS.gene57428:intron | 20.0% |
| !!! | CAACTAATAATTTTTTGTAC+AGG | - | chr4.3:9945424-9945443 | None:intergenic | 20.0% |
| !!! | GGAAAGAAAAAGTTTTATTA+AGG | + | chr4.3:9942781-9942800 | MS.gene57428:CDS | 20.0% |
| !!! | TCATCTTATTTTTCAAGAAA+TGG | - | chr4.3:9943977-9943996 | None:intergenic | 20.0% |
| !!! | TTTTGTGTATAAAATGCAAT+TGG | + | chr4.3:9943702-9943721 | MS.gene57428:intron | 20.0% |
| ! | AAAACCATAGTAGTTAATAG+CGG | - | chr4.3:9944984-9945003 | None:intergenic | 25.0% |
| ! | AAAACTCTATGATGAAGTAA+AGG | + | chr4.3:9945603-9945622 | MS.gene57428:CDS | 25.0% |
| ! | AAAGGAATAAAAACATTCAG+AGG | - | chr4.3:9945776-9945795 | None:intergenic | 25.0% |
| ! | AAGGAATAAAAACATTCAGA+GGG | - | chr4.3:9945775-9945794 | None:intergenic | 25.0% |
| ! | AATTATTAGTTGGAAAAGGA+CGG | + | chr4.3:9945432-9945451 | MS.gene57428:CDS | 25.0% |
| ! | ACATTATTTAAAGGTGATGA+AGG | - | chr4.3:9942971-9942990 | None:intergenic | 25.0% |
| ! | AGAAAATACAAAATTGTCCT+TGG | + | chr4.3:9944556-9944575 | MS.gene57428:intron | 25.0% |
| ! | ATCTTGATAGAAACTAGAAA+TGG | + | chr4.3:9945106-9945125 | MS.gene57428:intron | 25.0% |
| ! | ATTCAATCTCTTAGAAATGT+TGG | + | chr4.3:9942851-9942870 | MS.gene57428:CDS | 25.0% |
| ! | CATGAAGTTATTCACTTATT+TGG | + | chr4.3:9944151-9944170 | MS.gene57428:intron | 25.0% |
| ! | CCATAATAACAAAGAAAACT+AGG | - | chr4.3:9944752-9944771 | None:intergenic | 25.0% |
| ! | CCTTGGTTTAAAAAAAACAA+GGG | + | chr4.3:9944573-9944592 | MS.gene57428:intron | 25.0% |
| ! | TACAGGTTCTATACATAAAA+GGG | - | chr4.3:9945407-9945426 | None:intergenic | 25.0% |
| ! | TCCTTGGTTTAAAAAAAACA+AGG | + | chr4.3:9944572-9944591 | MS.gene57428:intron | 25.0% |
| ! | TTCTCAGCAACATTATTTAA+AGG | - | chr4.3:9942980-9942999 | None:intergenic | 25.0% |
| !! | AAAGTATTTCTAACTGGATA+AGG | + | chr4.3:9945659-9945678 | MS.gene57428:intron | 25.0% |
| !! | AGTTTTCCTTCATAGAAAAA+AGG | + | chr4.3:9944198-9944217 | MS.gene57428:intron | 25.0% |
| !! | GTTTTATATGAACAAAACAG+AGG | - | chr4.3:9944829-9944848 | None:intergenic | 25.0% |
| !!! | AGATTTTCTTTCTAGCATAA+AGG | + | chr4.3:9943537-9943556 | MS.gene57428:CDS | 25.0% |
| !!! | CCTAGTTTTCTTTGTTATTA+TGG | + | chr4.3:9944749-9944768 | MS.gene57428:intron | 25.0% |
| !!! | GAATGTTTTTATTCCTTTCA+AGG | + | chr4.3:9945778-9945797 | MS.gene57428:intron | 25.0% |
| !!! | TTTTTTCTTTATTAGCCTTG+TGG | - | chr4.3:9944338-9944357 | None:intergenic | 25.0% |
| AAACTAAACGTTCATCAAAG+TGG | - | chr4.3:9944071-9944090 | None:intergenic | 30.0% | |
| AAAGGACTTTCATTATGCAA+AGG | - | chr4.3:9943019-9943038 | None:intergenic | 30.0% | |
| AAATAATGTTGCTGAGAATG+AGG | + | chr4.3:9942982-9943001 | MS.gene57428:CDS | 30.0% | |
| AAATAGGTTAAAACTTACCC+TGG | - | chr4.3:9943868-9943887 | None:intergenic | 30.0% | |
| AACTAGGACAAAAAAGTAAC+AGG | - | chr4.3:9944736-9944755 | None:intergenic | 30.0% | |
| AATAAAAACATTCAGAGGGA+AGG | - | chr4.3:9945771-9945790 | None:intergenic | 30.0% | |
| AATCTTTAGCAGCTAAATGA+TGG | + | chr4.3:9943911-9943930 | MS.gene57428:intron | 30.0% | |
| AATGCATATCAAACATGTAG+CGG | + | chr4.3:9944244-9944263 | MS.gene57428:intron | 30.0% | |
| ACTTTGATGAACGTTTAGTT+TGG | + | chr4.3:9944070-9944089 | MS.gene57428:intron | 30.0% | |
| ATAAAAACATTCAGAGGGAA+GGG | - | chr4.3:9945770-9945789 | None:intergenic | 30.0% | |
| ATATAGATAGTTAAGCTTCG+AGG | - | chr4.3:9946181-9946200 | None:intergenic | 30.0% | |
| ATCAAAACTAATGAAGACAG+CGG | + | chr4.3:9946796-9946815 | MS.gene57428:CDS | 30.0% | |
| ATCTTTAGCAGCTAAATGAT+GGG | + | chr4.3:9943912-9943931 | MS.gene57428:intron | 30.0% | |
| ATGTAACTAACAGTAGAAAC+AGG | - | chr4.3:9943049-9943068 | None:intergenic | 30.0% | |
| CTAGAAGAAATCGAGTTATT+TGG | + | chr4.3:9946460-9946479 | MS.gene57428:CDS | 30.0% | |
| GTACAGGTTCTATACATAAA+AGG | - | chr4.3:9945408-9945427 | None:intergenic | 30.0% | |
| TAGTGTCTGTATACAGAAAT+AGG | - | chr4.3:9943884-9943903 | None:intergenic | 30.0% | |
| TCAGAGCTGAAAAATGTTAA+TGG | + | chr4.3:9946971-9946990 | MS.gene57428:CDS | 30.0% | |
| TCTCTTAGAAATGTTGGTAT+AGG | + | chr4.3:9942857-9942876 | MS.gene57428:CDS | 30.0% | |
| TGAAGATGTATGAAGATATC+AGG | + | chr4.3:9946902-9946921 | MS.gene57428:CDS | 30.0% | |
| ! | AACACTGTATACTTTTACCA+AGG | + | chr4.3:9946548-9946567 | MS.gene57428:CDS | 30.0% |
| ! | ACACTGTATACTTTTACCAA+GGG | + | chr4.3:9946549-9946568 | MS.gene57428:CDS | 30.0% |
| ! | ACTACTATTTGATTTATGGC+TGG | + | chr4.3:9946250-9946269 | MS.gene57428:intron | 30.0% |
| ! | TATCATTCTAGAAACACAAC+AGG | + | chr4.3:9946394-9946413 | MS.gene57428:CDS | 30.0% |
| ! | TGCAATCAGAAACTTTTTGT+CGG | + | chr4.3:9946690-9946709 | MS.gene57428:CDS | 30.0% |
| ! | TTTGGATGTCTATTAGTTTG+TGG | + | chr4.3:9944169-9944188 | MS.gene57428:intron | 30.0% |
| !! | CAGTTGAAAGTATTTCTAAC+TGG | + | chr4.3:9945653-9945672 | MS.gene57428:intron | 30.0% |
| !! | TGAAGCATTGAGTTTATGTA+AGG | + | chr4.3:9942760-9942779 | MS.gene57428:CDS | 30.0% |
| !! | TTGGATGTCTATTAGTTTGT+GGG | + | chr4.3:9944170-9944189 | MS.gene57428:intron | 30.0% |
| !!! | CCCTTGTTTTTTTTAAACCA+AGG | - | chr4.3:9944576-9944595 | None:intergenic | 30.0% |
| !!! | TTTGCCGATTTTGTACAAAA+TGG | - | chr4.3:9944226-9944245 | None:intergenic | 30.0% |
| AAATCTTGATGTGGCTGAAA+AGG | + | chr4.3:9943402-9943421 | MS.gene57428:CDS | 35.0% | |
| AAATGTATGTGCAGAAAGAG+AGG | + | chr4.3:9943483-9943502 | MS.gene57428:CDS | 35.0% | |
| AAGATCAAGTTCAAAGAAGG+AGG | + | chr4.3:9943438-9943457 | MS.gene57428:CDS | 35.0% | |
| AAGCTAAGTATGTTGACATG+AGG | + | chr4.3:9944376-9944395 | MS.gene57428:intron | 35.0% | |
| AATCTGGTAGAGATGTTTCA+AGG | + | chr4.3:9943590-9943609 | MS.gene57428:CDS | 35.0% | |
| AATCTTGATGTGGCTGAAAA+GGG | + | chr4.3:9943403-9943422 | MS.gene57428:CDS | 35.0% | |
| AATTATCCTGTGTCCTTGAA+AGG | - | chr4.3:9945794-9945813 | None:intergenic | 35.0% | |
| AGAATGATATGCCAAGGAAA+TGG | - | chr4.3:9946383-9946402 | None:intergenic | 35.0% | |
| AGTTGAAGGTTGCAAACAAT+TGG | + | chr4.3:9943324-9943343 | MS.gene57428:CDS | 35.0% | |
| ATACATCTTCAACGATGCTT+CGG | - | chr4.3:9946893-9946912 | None:intergenic | 35.0% | |
| ATCTTCTTCAGACTTCTGAT+AGG | + | chr4.3:9943770-9943789 | MS.gene57428:intron | 35.0% | |
| CATCAATTTGCAAAAGACCA+AGG | + | chr4.3:9945970-9945989 | MS.gene57428:CDS | 35.0% | |
| CTATCCGCTATTAACTACTA+TGG | + | chr4.3:9944977-9944996 | MS.gene57428:intron | 35.0% | |
| GCATAAAGGATATAGAGCAT+AGG | + | chr4.3:9943551-9943570 | MS.gene57428:CDS | 35.0% | |
| GTTAGAGGCAAACAAAATCA+AGG | + | chr4.3:9943615-9943634 | MS.gene57428:CDS | 35.0% | |
| GTTAGTTACATGAGATCAAG+TGG | + | chr4.3:9943058-9943077 | MS.gene57428:CDS | 35.0% | |
| TAAAAACATTCAGAGGGAAG+GGG | - | chr4.3:9945769-9945788 | None:intergenic | 35.0% | |
| TAAAACTTACCCTGGAAAAC+AGG | - | chr4.3:9943860-9943879 | None:intergenic | 35.0% | |
| TAGTGAGTTCAAAGATTGCA+GGG | + | chr4.3:9943252-9943271 | MS.gene57428:CDS | 35.0% | |
| TATCAGGCAAAAAAGTGAAG+TGG | + | chr4.3:9946918-9946937 | MS.gene57428:CDS | 35.0% | |
| TCACGGCATAGAACAAAAAT+AGG | - | chr4.3:9946625-9946644 | None:intergenic | 35.0% | |
| TCTGTTAATTCCAGAAGTTG+CGG | - | chr4.3:9946120-9946139 | None:intergenic | 35.0% | |
| TCTTCTTCAGACTTCTGATA+GGG | + | chr4.3:9943771-9943790 | MS.gene57428:intron | 35.0% | |
| TGGAAGATCAAGTTCAAAGA+AGG | + | chr4.3:9943435-9943454 | MS.gene57428:CDS | 35.0% | |
| TGGTGACATAAATCTTGATG+TGG | + | chr4.3:9943393-9943412 | MS.gene57428:CDS | 35.0% | |
| TGTACATGCAAGTTTAACCA+AGG | + | chr4.3:9946843-9946862 | MS.gene57428:CDS | 35.0% | |
| TTAAAGGTGATGAAGGAGAA+GGG | - | chr4.3:9942964-9942983 | None:intergenic | 35.0% | |
| TTACCCATAGTAGTCAATAG+CGG | + | chr4.3:9944401-9944420 | MS.gene57428:intron | 35.0% | |
| TTGCAAATTGATGTCTAAGC+TGG | - | chr4.3:9945963-9945982 | None:intergenic | 35.0% | |
| TTTAAAGGTGATGAAGGAGA+AGG | - | chr4.3:9942965-9942984 | None:intergenic | 35.0% | |
| TTTATTCCTTTCAAGGACAC+AGG | + | chr4.3:9945785-9945804 | MS.gene57428:intron | 35.0% | |
| ! | AAGGGTAACTAGTTTGAGAT+GGG | - | chr4.3:9942946-9942965 | None:intergenic | 35.0% |
| ! | ACTGTTACACTTGATGCTTT+TGG | + | chr4.3:9943094-9943113 | MS.gene57428:CDS | 35.0% |
| ! | AGGGAAGATATTGATGATAG+TGG | + | chr4.3:9945502-9945521 | MS.gene57428:CDS | 35.0% |
| ! | ATAGATTAGCTGGCCAAAAA+AGG | - | chr4.3:9945315-9945334 | None:intergenic | 35.0% |
| ! | GAGCTTGTGTCTTTTTAATG+AGG | - | chr4.3:9944002-9944021 | None:intergenic | 35.0% |
| ! | GGCTCCATTTTGTACAAAAT+CGG | + | chr4.3:9944219-9944238 | MS.gene57428:intron | 35.0% |
| ! | GTTGGATTTTCTGATGCTAA+AGG | + | chr4.3:9943637-9943656 | MS.gene57428:CDS | 35.0% |
| ! | TATCCCGCTATAGCATTTTT+GGG | + | chr4.3:9944936-9944955 | MS.gene57428:intron | 35.0% |
| ! | TTTTTGTTCTATGCCGTGAT+TGG | + | chr4.3:9946626-9946645 | MS.gene57428:CDS | 35.0% |
| !! | AACTTCTGGAATTAACAGAG+GGG | + | chr4.3:9946121-9946140 | MS.gene57428:CDS | 35.0% |
| !! | CAACTTCTGGAATTAACAGA+GGG | + | chr4.3:9946120-9946139 | MS.gene57428:CDS | 35.0% |
| !! | GTAGAAACAGGTGTTGAAAA+AGG | - | chr4.3:9943037-9943056 | None:intergenic | 35.0% |
| !! | GTGTTTCAAAACTTGTTGCA+AGG | - | chr4.3:9945008-9945027 | None:intergenic | 35.0% |
| !! | GTTTCTAGAATGATATGCCA+AGG | - | chr4.3:9946389-9946408 | None:intergenic | 35.0% |
| !! | TAGTAGTTAATAGCGGATAG+CGG | - | chr4.3:9944977-9944996 | None:intergenic | 35.0% |
| !!! | AGTTTTAGGTTTGTAGTGCA+TGG | + | chr4.3:9943223-9943242 | MS.gene57428:CDS | 35.0% |
| !!! | ATGGAGCCTTTTTTCTATGA+AGG | - | chr4.3:9944207-9944226 | None:intergenic | 35.0% |
| !!! | CAACAAGTTTTGAAACACAG+AGG | + | chr4.3:9945010-9945029 | MS.gene57428:intron | 35.0% |
| !!! | TTAGTTTTGATCTCGCTTTC+TGG | - | chr4.3:9946787-9946806 | None:intergenic | 35.0% |
| !!! | TTCAAGTCTAGTGCCTTTTT+TGG | + | chr4.3:9945299-9945318 | MS.gene57428:intron | 35.0% |
| AAAACTAATGAAGACAGCGG+AGG | + | chr4.3:9946799-9946818 | MS.gene57428:CDS | 40.0% | |
| AAACAGGTGAAGTCTTTCTG+CGG | - | chr4.3:9943844-9943863 | None:intergenic | 40.0% | |
| ACCTGATTTAGGTGCATCTT+GGG | + | chr4.3:9943171-9943190 | MS.gene57428:CDS | 40.0% | |
| ACTCCACTTGAAACAACTGA+AGG | - | chr4.3:9943307-9943326 | None:intergenic | 40.0% | |
| AGATGTTTCAAGGCTGTTAG+AGG | + | chr4.3:9943600-9943619 | MS.gene57428:CDS | 40.0% | |
| AGCGTAGCTAATAGATTAGC+TGG | - | chr4.3:9945325-9945344 | None:intergenic | 40.0% | |
| AGTCATTCTGTGACACCTAT+TGG | + | chr4.3:9945881-9945900 | MS.gene57428:intron | 40.0% | |
| ATCAAGTTCAAAGAAGGAGG+AGG | + | chr4.3:9943441-9943460 | MS.gene57428:CDS | 40.0% | |
| ATTGAGAGCTTCCACATATG+AGG | - | chr4.3:9946518-9946537 | None:intergenic | 40.0% | |
| CAACGATGCTTCGGAAAATT+TGG | - | chr4.3:9946884-9946903 | None:intergenic | 40.0% | |
| CACGCAGAGAAATAATGACT+CGG | + | chr4.3:9946434-9946453 | MS.gene57428:CDS | 40.0% | |
| CCATGCATACAATCTGTCAA+GGG | - | chr4.3:9945578-9945597 | None:intergenic | 40.0% | |
| CCTTGACAGATTGTATGCAT+GGG | + | chr4.3:9945576-9945595 | MS.gene57428:CDS | 40.0% | |
| CGGCATAGAACAAAAATAGG+TGG | - | chr4.3:9946622-9946641 | None:intergenic | 40.0% | |
| CTAGTGAGTTCAAAGATTGC+AGG | + | chr4.3:9943251-9943270 | MS.gene57428:CDS | 40.0% | |
| GAGGCAAACAAAATCAAGGT+TGG | + | chr4.3:9943619-9943638 | MS.gene57428:CDS | 40.0% | |
| GATAGGGAAGTCGTCTAAAT+TGG | + | chr4.3:9943787-9943806 | MS.gene57428:intron | 40.0% | |
| GATTTAACGCTCGATTGACA+AGG | - | chr4.3:9946226-9946245 | None:intergenic | 40.0% | |
| GCAATACATCACCATTTCCT+TGG | + | chr4.3:9946369-9946388 | MS.gene57428:CDS | 40.0% | |
| GCATCACTAAGTTCTTCAGA+GGG | - | chr4.3:9946673-9946692 | None:intergenic | 40.0% | |
| GGTTGCAAACAATTGGATGA+TGG | + | chr4.3:9943331-9943350 | MS.gene57428:CDS | 40.0% | |
| GTCATTCTGTGACACCTATT+GGG | + | chr4.3:9945882-9945901 | MS.gene57428:intron | 40.0% | |
| TCAATGCCTAGCAATAGAAC+AGG | + | chr4.3:9944306-9944325 | MS.gene57428:intron | 40.0% | |
| TCATATGTGGAAGCTCTCAA+TGG | + | chr4.3:9946517-9946536 | MS.gene57428:CDS | 40.0% | |
| TGACCCCAAAAATGCTATAG+CGG | - | chr4.3:9944943-9944962 | None:intergenic | 40.0% | |
| TGATGGAAATGTGAGACAGT+TGG | + | chr4.3:9943348-9943367 | MS.gene57428:CDS | 40.0% | |
| TGCATCACTAAGTTCTTCAG+AGG | - | chr4.3:9946674-9946693 | None:intergenic | 40.0% | |
| ! | AAAGACTTCACCTGTTTTCC+AGG | + | chr4.3:9943847-9943866 | MS.gene57428:CDS | 40.0% |
| ! | AAGACTTCACCTGTTTTCCA+GGG | + | chr4.3:9943848-9943867 | MS.gene57428:CDS | 40.0% |
| ! | AGGGTAACTAGTTTGAGATG+GGG | - | chr4.3:9942945-9942964 | None:intergenic | 40.0% |
| ! | ATCCCGCTATAGCATTTTTG+GGG | + | chr4.3:9944937-9944956 | MS.gene57428:intron | 40.0% |
| ! | CCCTTTGGCTTCAAAATCAA+GGG | + | chr4.3:9945483-9945502 | MS.gene57428:CDS | 40.0% |
| ! | CTATCCCGCTATAGCATTTT+TGG | + | chr4.3:9944935-9944954 | MS.gene57428:intron | 40.0% |
| ! | GAAGGGTAACTAGTTTGAGA+TGG | - | chr4.3:9942947-9942966 | None:intergenic | 40.0% |
| ! | GAGAGGATAGTGAGAGTTTT+AGG | + | chr4.3:9943209-9943228 | MS.gene57428:CDS | 40.0% |
| ! | GATCCTTCAGTTGTTTCAAG+TGG | + | chr4.3:9943301-9943320 | MS.gene57428:CDS | 40.0% |
| ! | GTTGTTTCAAGTGGAGTTGA+AGG | + | chr4.3:9943310-9943329 | MS.gene57428:CDS | 40.0% |
| ! | TCCCTTTGGCTTCAAAATCA+AGG | + | chr4.3:9945482-9945501 | MS.gene57428:CDS | 40.0% |
| ! | TTGGTCTGAGTTTTGCAAAC+TGG | + | chr4.3:9946479-9946498 | MS.gene57428:CDS | 40.0% |
| !! | GCAACTTCTGGAATTAACAG+AGG | + | chr4.3:9946119-9946138 | MS.gene57428:CDS | 40.0% |
| !!! | CCCTTGATTTTGAAGCCAAA+GGG | - | chr4.3:9945486-9945505 | None:intergenic | 40.0% |
| !!! | TCCCTTGATTTTGAAGCCAA+AGG | - | chr4.3:9945487-9945506 | None:intergenic | 40.0% |
| AAACTCTCACTATCCTCTCC+AGG | - | chr4.3:9943208-9943227 | None:intergenic | 45.0% | |
| AACTCTCACTATCCTCTCCA+GGG | - | chr4.3:9943207-9943226 | None:intergenic | 45.0% | |
| ACAGAACAGCAGAAAAGCAG+AGG | - | chr4.3:9944615-9944634 | None:intergenic | 45.0% | |
| AGAGAGAGCAGAATGGAGTT+TGG | - | chr4.3:9944778-9944797 | None:intergenic | 45.0% | |
| AGAGTTGTATCCGCAACTTC+TGG | + | chr4.3:9946107-9946126 | MS.gene57428:CDS | 45.0% | |
| AGGGATCAGTGGTTACAAAC+TGG | + | chr4.3:9943271-9943290 | MS.gene57428:CDS | 45.0% | |
| AGGTGGAGGAGAAAACACAT+TGG | - | chr4.3:9943149-9943168 | None:intergenic | 45.0% | |
| AGTCTTTCTGCGGCAACAAA+CGG | - | chr4.3:9943834-9943853 | None:intergenic | 45.0% | |
| AGTTCTGCTTCAGCTCAGAT+TGG | - | chr4.3:9945248-9945267 | None:intergenic | 45.0% | |
| ATAGCGTTGCAGTGAGATAG+CGG | + | chr4.3:9944482-9944501 | MS.gene57428:intron | 45.0% | |
| ATGTGGAAGCTCTCAATGGT+TGG | + | chr4.3:9946521-9946540 | MS.gene57428:CDS | 45.0% | |
| CAAGATGCACCTAAATCAGG+TGG | - | chr4.3:9943172-9943191 | None:intergenic | 45.0% | |
| CACCTGATTTAGGTGCATCT+TGG | + | chr4.3:9943170-9943189 | MS.gene57428:CDS | 45.0% | |
| CAGAAACAGAGAGAGCAGAA+TGG | - | chr4.3:9944785-9944804 | None:intergenic | 45.0% | |
| CATGTGCCTGTTCTATTGCT+AGG | - | chr4.3:9944315-9944334 | None:intergenic | 45.0% | |
| CCCATGCATACAATCTGTCA+AGG | - | chr4.3:9945579-9945598 | None:intergenic | 45.0% | |
| CCCTTGACAGATTGTATGCA+TGG | + | chr4.3:9945575-9945594 | MS.gene57428:CDS | 45.0% | |
| CTATTGGGCTATCTGTATGC+AGG | + | chr4.3:9945897-9945916 | MS.gene57428:intron | 45.0% | |
| CTGCATACAGATAGCCCAAT+AGG | - | chr4.3:9945899-9945918 | None:intergenic | 45.0% | |
| CTGTGAGTGATGAACTCTGA+AGG | - | chr4.3:9943511-9943530 | None:intergenic | 45.0% | |
| GAAGAGTTCTGCATGATTGC+TGG | + | chr4.3:9945538-9945557 | MS.gene57428:CDS | 45.0% | |
| GACCCCAAAAATGCTATAGC+GGG | - | chr4.3:9944942-9944961 | None:intergenic | 45.0% | |
| GATTTATGGCTGGTGCAGAT+TGG | + | chr4.3:9946309-9946328 | MS.gene57428:intron | 45.0% | |
| GCATAGGTTCATTCGAGCTT+CGG | + | chr4.3:9943567-9943586 | MS.gene57428:CDS | 45.0% | |
| GGCAAAAAAGTGAAGTGGCT+CGG | + | chr4.3:9946923-9946942 | MS.gene57428:CDS | 45.0% | |
| GTTCTGCTTCAGCTCAGATT+GGG | - | chr4.3:9945247-9945266 | None:intergenic | 45.0% | |
| GTTGCAAGCTGAGAACAGAT+AGG | + | chr4.3:9945213-9945232 | MS.gene57428:intron | 45.0% | |
| TAACAGCCACACCTCATATG+TGG | + | chr4.3:9946504-9946523 | MS.gene57428:CDS | 45.0% | |
| TCAAAGATTGCAGGGATCAG+TGG | + | chr4.3:9943260-9943279 | MS.gene57428:CDS | 45.0% | |
| TCAAGTGATCGACAAGACCA+GGG | + | chr4.3:9945996-9946015 | MS.gene57428:CDS | 45.0% | |
| TCCCAAGATGCACCTAAATC+AGG | - | chr4.3:9943175-9943194 | None:intergenic | 45.0% | |
| TCGATCATAGACCTTCCTGA+TGG | - | chr4.3:9945932-9945951 | None:intergenic | 45.0% | |
| TCTTGGGATTTCTTTGACCC+TGG | + | chr4.3:9943187-9943206 | MS.gene57428:CDS | 45.0% | |
| TGCATACAATCTGTCAAGGG+TGG | - | chr4.3:9945575-9945594 | None:intergenic | 45.0% | |
| TGGAAATGTGAGACAGTTGG+AGG | + | chr4.3:9943351-9943370 | MS.gene57428:CDS | 45.0% | |
| TTCATTCGAGCTTCGGAATC+TGG | + | chr4.3:9943574-9943593 | MS.gene57428:CDS | 45.0% | |
| ! | TGGCCGCTATTGACTACTAT+GGG | - | chr4.3:9944407-9944426 | None:intergenic | 45.0% |
| ! | TTGGCCGCTATTGACTACTA+TGG | - | chr4.3:9944408-9944427 | None:intergenic | 45.0% |
| ! | TTTTACCAAGGGAACGTACC+AGG | + | chr4.3:9946560-9946579 | MS.gene57428:CDS | 45.0% |
| !! | GCTGAAAAGGGTGTTGATGT+TGG | + | chr4.3:9943415-9943434 | MS.gene57428:CDS | 45.0% |
| !!! | TTTTGAAGCCAAAGGGATCC+TGG | - | chr4.3:9945479-9945498 | None:intergenic | 45.0% |
| AACACAACAGGAACCTTGCC+AGG | + | chr4.3:9946406-9946425 | MS.gene57428:CDS | 50.0% | |
| ATCTGTCAAGGGTGGACGAA+TGG | - | chr4.3:9945567-9945586 | None:intergenic | 50.0% | |
| ATTTCTCTGCGTGCATCTCC+TGG | - | chr4.3:9946427-9946446 | None:intergenic | 50.0% | |
| CTCAAGTGATCGACAAGACC+AGG | + | chr4.3:9945995-9946014 | MS.gene57428:CDS | 50.0% | |
| GAAGGAGGAGGAGAAGAACA+TGG | + | chr4.3:9943453-9943472 | MS.gene57428:CDS | 50.0% | |
| GAGCAAACGCGACAAAGTAG+AGG | - | chr4.3:9944667-9944686 | None:intergenic | 50.0% | |
| GAGCTTCCACATATGAGGTG+TGG | - | chr4.3:9946513-9946532 | None:intergenic | 50.0% | |
| GATGCACCTAAATCAGGTGG+AGG | - | chr4.3:9943169-9943188 | None:intergenic | 50.0% | |
| GCTATCTCACTGCAACGCTA+TGG | - | chr4.3:9944483-9944502 | None:intergenic | 50.0% | |
| GGATTTCTTTGACCCTGGAG+AGG | + | chr4.3:9943192-9943211 | MS.gene57428:CDS | 50.0% | |
| GGCTAGTGAATCCATCAGGA+AGG | + | chr4.3:9945918-9945937 | MS.gene57428:intron | 50.0% | |
| GGTCAGTCGATCAAGAACCT+TGG | - | chr4.3:9946863-9946882 | None:intergenic | 50.0% | |
| GTCTTTCTGCGGCAACAAAC+GGG | - | chr4.3:9943833-9943852 | None:intergenic | 50.0% | |
| GTTCTTCAGAGGGTAAAGCC+TGG | - | chr4.3:9946663-9946682 | None:intergenic | 50.0% | |
| TAGAACAGGCACATGCCACA+AGG | + | chr4.3:9944320-9944339 | MS.gene57428:intron | 50.0% | |
| TATGCCGTGATTGGTGTGCT+GGG | + | chr4.3:9946635-9946654 | MS.gene57428:CDS | 50.0% | |
| TCTGCACTCGCGAATTAGAG+TGG | + | chr4.3:9946032-9946051 | MS.gene57428:CDS | 50.0% | |
| TGCAGGCTAGTGAATCCATC+AGG | + | chr4.3:9945914-9945933 | MS.gene57428:intron | 50.0% | |
| TGTCGATCACTTGAGTGCCT+TGG | - | chr4.3:9945990-9946009 | None:intergenic | 50.0% | |
| ! | CAGATTGGTCAGGATGTGGA+AGG | + | chr4.3:9946324-9946343 | MS.gene57428:intron | 50.0% |
| ! | CTTTTCGATCATCCTCGTCC+AGG | + | chr4.3:9945458-9945477 | MS.gene57428:CDS | 50.0% |
| !! | CTGTGCTGACTCAGCACAAT+TGG | + | chr4.3:9945266-9945285 | MS.gene57428:intron | 50.0% |
| ATCCTCGTCCAGGATCCCTT+TGG | + | chr4.3:9945468-9945487 | MS.gene57428:CDS | 55.0% | |
| CAAGACCAGGGCAGTTGTGA+AGG | + | chr4.3:9946008-9946027 | MS.gene57428:CDS | 55.0% | |
| CAGATCCTTCACAACTGCCC+TGG | - | chr4.3:9946016-9946035 | None:intergenic | 55.0% | |
| CCTAAATCAGGTGGAGGTGG+AGG | - | chr4.3:9943163-9943182 | None:intergenic | 55.0% | |
| CCTCCACCTCCACCTGATTT+AGG | + | chr4.3:9943160-9943179 | MS.gene57428:CDS | 55.0% | |
| CTATGCCGTGATTGGTGTGC+TGG | + | chr4.3:9946634-9946653 | MS.gene57428:CDS | 55.0% | |
| GCACCTAAATCAGGTGGAGG+TGG | - | chr4.3:9943166-9943185 | None:intergenic | 55.0% | |
| GGATCCCAGCACACCAATCA+CGG | - | chr4.3:9946642-9946661 | None:intergenic | 55.0% | |
| TCACCACCAACAGTACCACC+TGG | - | chr4.3:9943379-9943398 | None:intergenic | 55.0% | |
| TGATTGGTGTGCTGGGATCC+AGG | + | chr4.3:9946642-9946661 | MS.gene57428:CDS | 55.0% | |
| TTGCTCCTGGTACGTTCCCT+TGG | - | chr4.3:9946568-9946587 | None:intergenic | 55.0% | |
| ! | AACGCGTCGTAGCGGTTTTG+CGG | + | chr4.3:9944508-9944527 | MS.gene57428:intron | 55.0% |
| ! | ATGGCTGGTGCAGATTGGTC+AGG | + | chr4.3:9946314-9946333 | MS.gene57428:intron | 55.0% |
| ! | GGAGAACGGTCTTTTGCTCC+TGG | - | chr4.3:9946581-9946600 | None:intergenic | 55.0% |
| ! | GGTGCAGATTGGTCAGGATG+TGG | + | chr4.3:9946320-9946339 | MS.gene57428:intron | 55.0% |
| AGAGCTCGACGAGGGGAGAA+CGG | - | chr4.3:9946595-9946614 | None:intergenic | 60.0% | |
| AGCCAAAGGGATCCTGGACG+AGG | - | chr4.3:9945473-9945492 | None:intergenic | 60.0% | |
| GCACCAGGTGGTACTGTTGG+TGG | + | chr4.3:9943373-9943392 | MS.gene57428:CDS | 60.0% | |
| GGCCAATAGCGCCGCTATAG+CGG | + | chr4.3:9944422-9944441 | MS.gene57428:intron | 60.0% | |
| TCTGCGTGCATCTCCTGGCA+AGG | - | chr4.3:9946422-9946441 | None:intergenic | 60.0% | |
| ! | GAGGCACCAGGTGGTACTGT+TGG | + | chr4.3:9943370-9943389 | MS.gene57428:CDS | 60.0% |
| !! | AGACAGTTGGAGGCACCAGG+TGG | + | chr4.3:9943361-9943380 | MS.gene57428:CDS | 60.0% |
| !! | GCGGCAACAAACGGGCTGAA+TGG | - | chr4.3:9943825-9943844 | None:intergenic | 60.0% |
| !! | GTGAGACAGTTGGAGGCACC+AGG | + | chr4.3:9943358-9943377 | MS.gene57428:CDS | 60.0% |
| !! | TGGCTTGTTGCGTAGCGCTC+CGG | - | chr4.3:9944463-9944482 | None:intergenic | 60.0% |
| GGCCGCTATAGCGGCGCTAT+TGG | - | chr4.3:9944427-9944446 | None:intergenic | 65.0% | |
| GTGGAGCCAGAGCTCGACGA+GGG | - | chr4.3:9946603-9946622 | None:intergenic | 65.0% | |
| GTTCTCCCCTCGTCGAGCTC+TGG | + | chr4.3:9946594-9946613 | MS.gene57428:CDS | 65.0% | |
| TGGAGCCAGAGCTCGACGAG+GGG | - | chr4.3:9946602-9946621 | None:intergenic | 65.0% | |
| ! | TAGCGGATAGCGGCGCGTAG+CGG | - | chr4.3:9944967-9944986 | None:intergenic | 65.0% |
| AGCGGCGCAACGCGTCGTAG+CGG | + | chr4.3:9944500-9944519 | MS.gene57428:intron | 70.0% | |
| GGTGGAGCCAGAGCTCGACG+AGG | - | chr4.3:9946604-9946623 | None:intergenic | 70.0% | |
| GCACCGCGCGGCCGCTATAG+CGG | - | chr4.3:9944436-9944455 | None:intergenic | 75.0% | |
| GCTATAGCGGCCGCGCGGTG+CGG | + | chr4.3:9944435-9944454 | MS.gene57428:intron | 75.0% | |
| ! | GCGCCGCTATAGCGGCCGCG+CGG | + | chr4.3:9944430-9944449 | MS.gene57428:intron | 80.0% |
| ! | CGCTCCGGCACCGCACCGCG+CGG | - | chr4.3:9944448-9944467 | None:intergenic | 85.0% |
| ! | GCGGCCGCGCGGTGCGGTGC+CGG | + | chr4.3:9944441-9944460 | MS.gene57428:intron | 90.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 9942728 | 9946990 | 9942728 | ID=MS.gene57428 |
| chr4.3 | mRNA | 9942728 | 9946990 | 9942728 | ID=MS.gene57428.t1;Parent=MS.gene57428 |
| chr4.3 | exon | 9942728 | 9943658 | 9942728 | ID=MS.gene57428.t1.exon1;Parent=MS.gene57428.t1 |
| chr4.3 | CDS | 9942728 | 9943658 | 9942728 | ID=cds.MS.gene57428.t1;Parent=MS.gene57428.t1 |
| chr4.3 | exon | 9943792 | 9943869 | 9943792 | ID=MS.gene57428.t1.exon2;Parent=MS.gene57428.t1 |
| chr4.3 | CDS | 9943792 | 9943869 | 9943792 | ID=cds.MS.gene57428.t1;Parent=MS.gene57428.t1 |
| chr4.3 | exon | 9945419 | 9945624 | 9945419 | ID=MS.gene57428.t1.exon3;Parent=MS.gene57428.t1 |
| chr4.3 | CDS | 9945419 | 9945624 | 9945419 | ID=cds.MS.gene57428.t1;Parent=MS.gene57428.t1 |
| chr4.3 | exon | 9945919 | 9946142 | 9945919 | ID=MS.gene57428.t1.exon4;Parent=MS.gene57428.t1 |
| chr4.3 | CDS | 9945919 | 9946142 | 9945919 | ID=cds.MS.gene57428.t1;Parent=MS.gene57428.t1 |
| chr4.3 | exon | 9946327 | 9946990 | 9946327 | ID=MS.gene57428.t1.exon5;Parent=MS.gene57428.t1 |
| chr4.3 | CDS | 9946327 | 9946990 | 9946327 | ID=cds.MS.gene57428.t1;Parent=MS.gene57428.t1 |
| Gene Sequence |
| Protein sequence |
