Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene57524.t1 | XP_024629359.1 | 99.2 | 370 | 2 | 1 | 1 | 370 | 1 | 369 | 2.70E-196 | 694.5 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene57524.t1 | O80842 | 84.8 | 330 | 49 | 1 | 40 | 369 | 37 | 365 | 1.4e-156 | 553.9 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene57524.t1 | A0A396GFB4 | 99.2 | 370 | 2 | 1 | 1 | 370 | 1 | 369 | 1.9e-196 | 694.5 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049758 | MS.gene57524 | 0.853954 | 1.70E-61 | -1.69E-46 |
MS.gene050301 | MS.gene57524 | 0.855386 | 6.53E-62 | -1.69E-46 |
MS.gene050558 | MS.gene57524 | 0.817042 | 4.05E-52 | -1.69E-46 |
MS.gene05101 | MS.gene57524 | 0.803022 | 4.25E-49 | -1.69E-46 |
MS.gene051471 | MS.gene57524 | 0.813946 | 1.98E-51 | -1.69E-46 |
MS.gene051582 | MS.gene57524 | 0.854589 | 1.11E-61 | -1.69E-46 |
MS.gene051663 | MS.gene57524 | 0.828692 | 7.81E-55 | -1.69E-46 |
MS.gene051860 | MS.gene57524 | 0.810389 | 1.18E-50 | -1.69E-46 |
MS.gene052340 | MS.gene57524 | 0.808214 | 3.46E-50 | -1.69E-46 |
MS.gene053836 | MS.gene57524 | 0.859396 | 4.26E-63 | -1.69E-46 |
MS.gene05455 | MS.gene57524 | 0.833997 | 3.87E-56 | -1.69E-46 |
MS.gene054942 | MS.gene57524 | 0.810145 | 1.33E-50 | -1.69E-46 |
MS.gene055277 | MS.gene57524 | 0.812187 | 4.81E-51 | -1.69E-46 |
MS.gene055390 | MS.gene57524 | 0.834573 | 2.77E-56 | -1.69E-46 |
MS.gene055422 | MS.gene57524 | 0.854487 | 1.19E-61 | -1.69E-46 |
MS.gene055428 | MS.gene57524 | 0.851999 | 6.16E-61 | -1.69E-46 |
MS.gene05553 | MS.gene57524 | 0.800674 | 1.29E-48 | -1.69E-46 |
MS.gene055712 | MS.gene57524 | 0.841646 | 4.19E-58 | -1.69E-46 |
MS.gene056407 | MS.gene57524 | 0.816382 | 5.69E-52 | -1.69E-46 |
MS.gene056612 | MS.gene57524 | 0.814741 | 1.32E-51 | -1.69E-46 |
MS.gene05702 | MS.gene57524 | 0.807943 | 3.95E-50 | -1.69E-46 |
MS.gene057121 | MS.gene57524 | 0.851973 | 6.26E-61 | -1.69E-46 |
MS.gene057245 | MS.gene57524 | 0.810303 | 1.23E-50 | -1.69E-46 |
MS.gene057450 | MS.gene57524 | 0.808691 | 2.73E-50 | -1.69E-46 |
MS.gene058002 | MS.gene57524 | 0.839611 | 1.43E-57 | -1.69E-46 |
MS.gene05811 | MS.gene57524 | 0.841929 | 3.53E-58 | -1.69E-46 |
MS.gene058276 | MS.gene57524 | 0.801286 | 9.67E-49 | -1.69E-46 |
MS.gene05907 | MS.gene57524 | 0.837241 | 5.84E-57 | -1.69E-46 |
MS.gene059518 | MS.gene57524 | 0.820138 | 8.03E-53 | -1.69E-46 |
MS.gene05984 | MS.gene57524 | 0.822285 | 2.57E-53 | -1.69E-46 |
MS.gene059894 | MS.gene57524 | 0.838132 | 3.45E-57 | -1.69E-46 |
MS.gene060480 | MS.gene57524 | 0.803012 | 4.27E-49 | -1.69E-46 |
MS.gene061049 | MS.gene57524 | 0.822221 | 2.66E-53 | -1.69E-46 |
MS.gene061159 | MS.gene57524 | 0.803874 | 2.83E-49 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene57524.t1 | MTR_8g032340 | 94.415 | 376 | 10 | 4 | 1 | 370 | 1 | 371 | 0.0 | 691 |
MS.gene57524.t1 | MTR_8g032480 | 89.385 | 179 | 9 | 3 | 198 | 370 | 22 | 196 | 1.14e-105 | 309 |
MS.gene57524.t1 | MTR_7g104890 | 34.247 | 292 | 179 | 5 | 70 | 359 | 70 | 350 | 9.22e-39 | 145 |
MS.gene57524.t1 | MTR_7g104890 | 38.318 | 214 | 125 | 2 | 156 | 369 | 21 | 227 | 1.77e-37 | 140 |
MS.gene57524.t1 | MTR_2g104050 | 32.082 | 293 | 181 | 6 | 80 | 369 | 18 | 295 | 8.43e-34 | 130 |
MS.gene57524.t1 | MTR_4g010050 | 30.508 | 295 | 189 | 4 | 77 | 369 | 15 | 295 | 2.06e-33 | 130 |
MS.gene57524.t1 | MTR_4g130770 | 29.730 | 296 | 179 | 7 | 95 | 369 | 343 | 630 | 4.59e-21 | 95.1 |
MS.gene57524.t1 | MTR_7g085470 | 25.974 | 308 | 180 | 13 | 70 | 369 | 9 | 276 | 5.30e-15 | 75.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene57524.t1 | AT2G45770 | 78.533 | 368 | 72 | 3 | 4 | 369 | 3 | 365 | 0.0 | 577 |
MS.gene57524.t1 | AT5G03940 | 35.664 | 286 | 172 | 4 | 86 | 369 | 95 | 370 | 1.66e-41 | 153 |
MS.gene57524.t1 | AT1G15310 | 32.653 | 294 | 178 | 6 | 80 | 369 | 18 | 295 | 1.49e-35 | 135 |
MS.gene57524.t1 | AT1G48900 | 30.137 | 292 | 188 | 5 | 80 | 369 | 18 | 295 | 4.38e-32 | 125 |
MS.gene57524.t1 | AT1G48900 | 30.137 | 292 | 188 | 5 | 80 | 369 | 18 | 295 | 3.72e-31 | 124 |
MS.gene57524.t1 | AT5G49500 | 28.289 | 304 | 199 | 6 | 70 | 369 | 9 | 297 | 1.27e-27 | 114 |
MS.gene57524.t1 | AT5G49500 | 32.584 | 178 | 113 | 2 | 192 | 369 | 5 | 175 | 1.83e-22 | 97.8 |
MS.gene57524.t1 | AT4G30600 | 30.667 | 300 | 177 | 8 | 93 | 369 | 342 | 633 | 1.48e-21 | 96.7 |
MS.gene57524.t1 | AT4G30600 | 30.667 | 300 | 177 | 8 | 93 | 369 | 342 | 633 | 1.48e-21 | 96.7 |
Find 93 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGTGGTTGAGAGGGTGATTT+TGG | 0.111143 | 8.3:-61929528 | None:intergenic |
GCTTTATTAGTTTCTGATTT+TGG | 0.146686 | 8.3:+61929892 | MS.gene57524:CDS |
TTGATGAGCTTCTTCTTTAT+TGG | 0.152429 | 8.3:+61929736 | MS.gene57524:CDS |
CTCTTCCATTAGCCTGTAAT+TGG | 0.202802 | 8.3:-61934436 | None:intergenic |
TTAAGAGAGGATATACTTTC+TGG | 0.236248 | 8.3:+61929946 | MS.gene57524:CDS |
GGAGAGATTGTTACGAGTTT+TGG | 0.248300 | 8.3:-61929709 | None:intergenic |
GGACAGGTTGTGGGTGTAAC+TGG | 0.259487 | 8.3:+61936200 | MS.gene57524:intron |
GCAGGAAATCTTACTGGTTC+TGG | 0.278782 | 8.3:+61935596 | MS.gene57524:intron |
CAGGTTTACACACCAATTAC+AGG | 0.291032 | 8.3:+61934424 | MS.gene57524:intron |
AGAGTTAATTTCTTGTAAAA+AGG | 0.311345 | 8.3:+61934455 | MS.gene57524:CDS |
ATGCTTGCAGGAAATCTTAC+TGG | 0.317729 | 8.3:+61935590 | MS.gene57524:intron |
AGCACTGAAGAAGAATGTTT+TGG | 0.320378 | 8.3:+61932256 | MS.gene57524:CDS |
ATTTGTACCTGCTGATGCTT+TGG | 0.322384 | 8.3:-61934107 | None:intergenic |
CTAGTGATCAGCTAGAAATA+TGG | 0.333355 | 8.3:+61934038 | MS.gene57524:CDS |
TGCTTTGGATTTCTCAGATT+CGG | 0.340588 | 8.3:-61934092 | None:intergenic |
TAAATCAGGGAGTGAGATTA+AGG | 0.344186 | 8.3:+61929975 | MS.gene57524:CDS |
AACACCAACTATCATTATTA+CGG | 0.358526 | 8.3:-61932438 | None:intergenic |
CTTTCTGGGAAGCTTAAATC+AGG | 0.373488 | 8.3:+61929961 | MS.gene57524:CDS |
ATAATGATAGTTGGTGTTAA+TGG | 0.374585 | 8.3:+61932443 | MS.gene57524:CDS |
TGCTCCGCCGCCGGTGAAAC+CGG | 0.377632 | 8.3:+61929612 | MS.gene57524:CDS |
CTGGTTCTGGATGGAACTAC+TGG | 0.380978 | 8.3:+61935609 | MS.gene57524:CDS |
ATTTACTTCATTGAATTCTC+TGG | 0.387565 | 8.3:-61935652 | None:intergenic |
TGGTGGGAAGACAACATCTT+TGG | 0.387855 | 8.3:+61932466 | MS.gene57524:CDS |
CTGAGCTTCAACTTGGATAT+AGG | 0.400085 | 8.3:+61932306 | MS.gene57524:CDS |
GAAATATGGGCTGAAAGGAC+TGG | 0.422519 | 8.3:+61934052 | MS.gene57524:CDS |
TTTGTCTTGGGACAGGTTGT+GGG | 0.424495 | 8.3:+61936191 | MS.gene57524:intron |
TGTAAATAAACCGGTTTCAC+CGG | 0.426130 | 8.3:-61929622 | None:intergenic |
ACACACCAATTACAGGCTAA+TGG | 0.426484 | 8.3:+61934431 | MS.gene57524:CDS |
TCTTGCAGAACCATCCAGTT+TGG | 0.435962 | 8.3:-61936234 | None:intergenic |
CGGCGGCGGAGCATGTGAAC+CGG | 0.436167 | 8.3:-61929602 | None:intergenic |
GGGTTTGGTTTGAAATGGGG+AGG | 0.443567 | 8.3:-61929565 | None:intergenic |
GACAAAGGCCTCTGCGTCAA+AGG | 0.445115 | 8.3:-61936470 | None:intergenic |
AAAATTCTACCAGATATTGT+TGG | 0.445186 | 8.3:+61933988 | MS.gene57524:intron |
TAAGAGAGGATATACTTTCT+GGG | 0.459006 | 8.3:+61929947 | MS.gene57524:CDS |
CCTCTGCGTCAAAGGGTTGA+AGG | 0.459999 | 8.3:-61936462 | None:intergenic |
GGTGGGAAGACAACATCTTT+GGG | 0.465463 | 8.3:+61932467 | MS.gene57524:CDS |
GCAGTTGCTAAAGTAGTTGC+TGG | 0.465835 | 8.3:+61934477 | MS.gene57524:CDS |
GTGAACCGGGTTCGAGATGA+GGG | 0.467454 | 8.3:-61929588 | None:intergenic |
GATGTAGAGAAACTCTTCTC+TGG | 0.470900 | 8.3:+61929681 | MS.gene57524:CDS |
GGAATCCCTGTAAAATTTGT+CGG | 0.476939 | 8.3:+61936418 | MS.gene57524:CDS |
AGCTAGAAATATGGGCTGAA+AGG | 0.492518 | 8.3:+61934047 | MS.gene57524:CDS |
CCAACTATCATTATTACGGC+TGG | 0.492849 | 8.3:-61932434 | None:intergenic |
GAAAATTACTATTAAGATTG+TGG | 0.493629 | 8.3:+61929918 | MS.gene57524:CDS |
TAGTGATCAGCTAGAAATAT+GGG | 0.501137 | 8.3:+61934039 | MS.gene57524:CDS |
ATTGTATTATGTGATACATC+TGG | 0.501382 | 8.3:+61934313 | MS.gene57524:CDS |
ACCGGTTTATTTACAAAACT+CGG | 0.501597 | 8.3:+61929630 | MS.gene57524:CDS |
ATAGTTGGTGTTAATGGTGG+TGG | 0.506081 | 8.3:+61932449 | MS.gene57524:CDS |
TACCAGATATTGTTGGCAGC+TGG | 0.506306 | 8.3:+61933995 | MS.gene57524:intron |
GTTAGTGTGGTTGATGAGCT+TGG | 0.508241 | 8.3:+61936397 | MS.gene57524:CDS |
AGTAAGACTGAGCTTCAACT+TGG | 0.508251 | 8.3:+61932299 | MS.gene57524:CDS |
GCGGGAGAATGAAGCGGAGG+TGG | 0.511278 | 8.3:-61929493 | None:intergenic |
CCTGTAAAATTTGTCGGTGT+TGG | 0.518722 | 8.3:+61936424 | MS.gene57524:CDS |
CGGTTCACATGCTCCGCCGC+CGG | 0.521204 | 8.3:+61929603 | MS.gene57524:CDS |
ACAAAGGCCTCTGCGTCAAA+GGG | 0.522101 | 8.3:-61936469 | None:intergenic |
AAATATGGGCTGAAAGGACT+GGG | 0.523298 | 8.3:+61934053 | MS.gene57524:CDS |
GATTGTGGAGAATTTAAGAG+AGG | 0.533147 | 8.3:+61929933 | MS.gene57524:CDS |
CTGGCTTATAGATTGAAGAA+TGG | 0.541325 | 8.3:+61932746 | MS.gene57524:CDS |
ATTGAAGAATGGAGGTGCTA+AGG | 0.542507 | 8.3:+61932757 | MS.gene57524:CDS |
TCATTGAATTCTCTGGCTTG+TGG | 0.544319 | 8.3:-61935645 | None:intergenic |
GAGAAATCCAAAGCATCAGC+AGG | 0.562472 | 8.3:+61934100 | MS.gene57524:CDS |
TGTGAACCGGGTTCGAGATG+AGG | 0.574121 | 8.3:-61929589 | None:intergenic |
CTTGTGTTGGCAGGTTAGTG+TGG | 0.575233 | 8.3:+61936384 | MS.gene57524:intron |
TTTGGATTTGTTAAGCAACA+AGG | 0.578155 | 8.3:+61932274 | MS.gene57524:CDS |
GGCGGCGGAGCATGTGAACC+GGG | 0.581453 | 8.3:-61929601 | None:intergenic |
AAATTTGTCGGTGTTGGTGA+AGG | 0.581507 | 8.3:+61936430 | MS.gene57524:CDS |
CCAGCCGTAATAATGATAGT+TGG | 0.582690 | 8.3:+61932434 | MS.gene57524:CDS |
ATGAGGAATTGTGGTTGAGA+GGG | 0.585559 | 8.3:-61929537 | None:intergenic |
AAGAAGAAGCTCATCAATGA+CGG | 0.586886 | 8.3:-61929730 | None:intergenic |
GAAATCTTACTGGTTCTGGA+TGG | 0.588673 | 8.3:+61935600 | MS.gene57524:CDS |
TTGGATTTGTTAAGCAACAA+GGG | 0.588870 | 8.3:+61932275 | MS.gene57524:CDS |
GAAATGGGGAGGTGAAGATG+AGG | 0.589668 | 8.3:-61929554 | None:intergenic |
GAACCGGGTTCGAGATGAGG+GGG | 0.589872 | 8.3:-61929586 | None:intergenic |
AAACTGGATGGTTCTGCAAG+AGG | 0.592327 | 8.3:+61936236 | MS.gene57524:CDS |
TAAACCGGTTTCACCGGCGG+CGG | 0.597715 | 8.3:-61929616 | None:intergenic |
AGTTCTTGATGAACTCGAAG+AGG | 0.599876 | 8.3:+61929779 | MS.gene57524:CDS |
GATGAGGAATTGTGGTTGAG+AGG | 0.609302 | 8.3:-61929538 | None:intergenic |
AAATAAACCGGTTTCACCGG+CGG | 0.610816 | 8.3:-61929619 | None:intergenic |
TGGATTTGTTAAGCAACAAG+GGG | 0.614912 | 8.3:+61932276 | MS.gene57524:CDS |
GTTTATTTACAAAACTCGGC+CGG | 0.616890 | 8.3:+61929634 | MS.gene57524:CDS |
AACCGGGTTCGAGATGAGGG+GGG | 0.622086 | 8.3:-61929585 | None:intergenic |
TTTCTGGGAAGCTTAAATCA+GGG | 0.624720 | 8.3:+61929962 | MS.gene57524:CDS |
TGAACCGGGTTCGAGATGAG+GGG | 0.627367 | 8.3:-61929587 | None:intergenic |
TAGTTGGTGTTAATGGTGGT+GGG | 0.640615 | 8.3:+61932450 | MS.gene57524:CDS |
GAGGCGGGAGAATGAAGCGG+AGG | 0.641097 | 8.3:-61929496 | None:intergenic |
GAGGTGAAGATGAGGAATTG+TGG | 0.646416 | 8.3:-61929546 | None:intergenic |
TATTTCTAGCTGATCACTAG+CGG | 0.649322 | 8.3:-61934035 | None:intergenic |
GCTTATAGATTGAAGAATGG+AGG | 0.650080 | 8.3:+61932749 | MS.gene57524:CDS |
GGAGAGGCGGGAGAATGAAG+CGG | 0.650391 | 8.3:-61929499 | None:intergenic |
ATGATAGTTGGTGTTAATGG+TGG | 0.652803 | 8.3:+61932446 | MS.gene57524:CDS |
CTGGATGGTTCTGCAAGAGG+TGG | 0.654793 | 8.3:+61936239 | MS.gene57524:CDS |
CCTTCAACCCTTTGACGCAG+AGG | 0.657126 | 8.3:+61936462 | MS.gene57524:CDS |
GACTGGGTGTGAGATTGTTG+TGG | 0.660021 | 8.3:+61934069 | MS.gene57524:CDS |
TTCTGCAAGAGGTGGCTGTG+TGG | 0.671813 | 8.3:+61936247 | MS.gene57524:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.3 | gene | 61929483 | 61936510 | 61929483 | ID=MS.gene57524 |
chr8.3 | mRNA | 61929483 | 61936510 | 61929483 | ID=MS.gene57524.t1;Parent=MS.gene57524 |
chr8.3 | exon | 61929483 | 61929800 | 61929483 | ID=MS.gene57524.t1.exon1;Parent=MS.gene57524.t1 |
chr8.3 | CDS | 61929483 | 61929800 | 61929483 | ID=cds.MS.gene57524.t1;Parent=MS.gene57524.t1 |
chr8.3 | exon | 61929892 | 61929996 | 61929892 | ID=MS.gene57524.t1.exon2;Parent=MS.gene57524.t1 |
chr8.3 | CDS | 61929892 | 61929996 | 61929892 | ID=cds.MS.gene57524.t1;Parent=MS.gene57524.t1 |
chr8.3 | exon | 61932254 | 61932327 | 61932254 | ID=MS.gene57524.t1.exon3;Parent=MS.gene57524.t1 |
chr8.3 | CDS | 61932254 | 61932327 | 61932254 | ID=cds.MS.gene57524.t1;Parent=MS.gene57524.t1 |
chr8.3 | exon | 61932430 | 61932488 | 61932430 | ID=MS.gene57524.t1.exon4;Parent=MS.gene57524.t1 |
chr8.3 | CDS | 61932430 | 61932488 | 61932430 | ID=cds.MS.gene57524.t1;Parent=MS.gene57524.t1 |
chr8.3 | exon | 61932741 | 61932778 | 61932741 | ID=MS.gene57524.t1.exon5;Parent=MS.gene57524.t1 |
chr8.3 | CDS | 61932741 | 61932778 | 61932741 | ID=cds.MS.gene57524.t1;Parent=MS.gene57524.t1 |
chr8.3 | exon | 61934001 | 61934121 | 61934001 | ID=MS.gene57524.t1.exon6;Parent=MS.gene57524.t1 |
chr8.3 | CDS | 61934001 | 61934121 | 61934001 | ID=cds.MS.gene57524.t1;Parent=MS.gene57524.t1 |
chr8.3 | exon | 61934269 | 61934337 | 61934269 | ID=MS.gene57524.t1.exon7;Parent=MS.gene57524.t1 |
chr8.3 | CDS | 61934269 | 61934337 | 61934269 | ID=cds.MS.gene57524.t1;Parent=MS.gene57524.t1 |
chr8.3 | exon | 61934427 | 61934509 | 61934427 | ID=MS.gene57524.t1.exon8;Parent=MS.gene57524.t1 |
chr8.3 | CDS | 61934427 | 61934509 | 61934427 | ID=cds.MS.gene57524.t1;Parent=MS.gene57524.t1 |
chr8.3 | exon | 61935600 | 61935668 | 61935600 | ID=MS.gene57524.t1.exon9;Parent=MS.gene57524.t1 |
chr8.3 | CDS | 61935600 | 61935668 | 61935600 | ID=cds.MS.gene57524.t1;Parent=MS.gene57524.t1 |
chr8.3 | exon | 61936206 | 61936268 | 61936206 | ID=MS.gene57524.t1.exon10;Parent=MS.gene57524.t1 |
chr8.3 | CDS | 61936206 | 61936268 | 61936206 | ID=cds.MS.gene57524.t1;Parent=MS.gene57524.t1 |
chr8.3 | exon | 61936397 | 61936510 | 61936397 | ID=MS.gene57524.t1.exon11;Parent=MS.gene57524.t1 |
chr8.3 | CDS | 61936397 | 61936510 | 61936397 | ID=cds.MS.gene57524.t1;Parent=MS.gene57524.t1 |
Gene Sequence |
Protein sequence |