Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57920.t1 | XP_003610198.1 | 98.3 | 482 | 8 | 0 | 1 | 482 | 1 | 482 | 8.60E-280 | 972.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57920.t1 | F4JQ95 | 64.2 | 491 | 166 | 3 | 1 | 481 | 1 | 491 | 4.0e-193 | 675.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57920.t1 | G7JD57 | 98.3 | 482 | 8 | 0 | 1 | 482 | 1 | 482 | 6.2e-280 | 972.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049356 | MS.gene57920 | 0.805374 | 1.38E-49 | -1.69E-46 |
| MS.gene049378 | MS.gene57920 | 0.801926 | 7.15E-49 | -1.69E-46 |
| MS.gene050762 | MS.gene57920 | 0.832365 | 9.85E-56 | -1.69E-46 |
| MS.gene050763 | MS.gene57920 | 0.83236 | 9.88E-56 | -1.69E-46 |
| MS.gene051360 | MS.gene57920 | 0.802671 | 5.02E-49 | -1.69E-46 |
| MS.gene052188 | MS.gene57920 | 0.807997 | 3.85E-50 | -1.69E-46 |
| MS.gene052564 | MS.gene57920 | 0.802908 | 4.49E-49 | -1.69E-46 |
| MS.gene052565 | MS.gene57920 | 0.812947 | 3.28E-51 | -1.69E-46 |
| MS.gene05316 | MS.gene57920 | 0.807198 | 5.68E-50 | -1.69E-46 |
| MS.gene053559 | MS.gene57920 | 0.80538 | 1.37E-49 | -1.69E-46 |
| MS.gene053577 | MS.gene57920 | 0.805736 | 1.16E-49 | -1.69E-46 |
| MS.gene054379 | MS.gene57920 | 0.834248 | 3.35E-56 | -1.69E-46 |
| MS.gene054930 | MS.gene57920 | 0.852031 | 6.02E-61 | -1.69E-46 |
| MS.gene057469 | MS.gene57920 | 0.803387 | 3.57E-49 | -1.69E-46 |
| MS.gene057610 | MS.gene57920 | 0.806557 | 7.76E-50 | -1.69E-46 |
| MS.gene057929 | MS.gene57920 | 0.811802 | 5.83E-51 | -1.69E-46 |
| MS.gene058949 | MS.gene57920 | 0.841325 | 5.09E-58 | -1.69E-46 |
| MS.gene060084 | MS.gene57920 | 0.800185 | 1.62E-48 | -1.69E-46 |
| MS.gene060495 | MS.gene57920 | 0.833407 | 5.43E-56 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57920.t1 | MTR_4g129070 | 98.340 | 482 | 8 | 0 | 1 | 482 | 1 | 482 | 0.0 | 979 |
| MS.gene57920.t1 | MTR_4g129070 | 97.912 | 431 | 9 | 0 | 1 | 431 | 1 | 431 | 0.0 | 872 |
| MS.gene57920.t1 | MTR_0026s0160 | 76.858 | 471 | 108 | 1 | 12 | 481 | 19 | 489 | 0.0 | 772 |
| MS.gene57920.t1 | MTR_4g129070 | 97.337 | 338 | 9 | 0 | 1 | 338 | 1 | 338 | 0.0 | 681 |
| MS.gene57920.t1 | MTR_2g089785 | 35.012 | 417 | 245 | 9 | 67 | 472 | 22 | 423 | 5.28e-79 | 254 |
| MS.gene57920.t1 | MTR_2g089785 | 35.012 | 417 | 245 | 9 | 67 | 472 | 22 | 423 | 2.17e-78 | 254 |
| MS.gene57920.t1 | MTR_8g464780 | 34.518 | 394 | 240 | 7 | 82 | 467 | 33 | 416 | 4.35e-74 | 242 |
| MS.gene57920.t1 | MTR_4g045973 | 34.359 | 390 | 248 | 6 | 81 | 467 | 214 | 598 | 4.06e-73 | 244 |
| MS.gene57920.t1 | MTR_4g109390 | 25.551 | 454 | 265 | 11 | 6 | 457 | 284 | 666 | 2.80e-36 | 142 |
| MS.gene57920.t1 | MTR_8g094940 | 31.217 | 378 | 184 | 13 | 85 | 455 | 333 | 641 | 1.01e-35 | 141 |
| MS.gene57920.t1 | MTR_4g109390 | 26.807 | 332 | 178 | 8 | 85 | 414 | 359 | 627 | 2.53e-29 | 122 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57920.t1 | AT4G30340 | 64.155 | 491 | 166 | 3 | 1 | 481 | 1 | 491 | 0.0 | 679 |
| MS.gene57920.t1 | AT2G18730 | 64.669 | 484 | 164 | 2 | 4 | 480 | 3 | 486 | 0.0 | 667 |
| MS.gene57920.t1 | AT5G57690 | 66.593 | 452 | 151 | 0 | 30 | 481 | 35 | 486 | 0.0 | 654 |
| MS.gene57920.t1 | AT4G30340 | 60.916 | 371 | 135 | 3 | 1 | 361 | 1 | 371 | 1.58e-170 | 485 |
| MS.gene57920.t1 | AT4G28130 | 37.186 | 398 | 228 | 9 | 79 | 469 | 41 | 423 | 9.62e-82 | 261 |
| MS.gene57920.t1 | AT2G20900 | 35.859 | 396 | 238 | 9 | 81 | 469 | 36 | 422 | 9.48e-78 | 251 |
| MS.gene57920.t1 | AT2G20900 | 35.859 | 396 | 238 | 9 | 81 | 469 | 36 | 422 | 9.48e-78 | 251 |
| MS.gene57920.t1 | AT2G20900 | 35.859 | 396 | 238 | 9 | 81 | 469 | 36 | 422 | 1.45e-77 | 251 |
| MS.gene57920.t1 | AT2G20900 | 35.859 | 396 | 238 | 9 | 81 | 469 | 36 | 422 | 1.45e-77 | 251 |
| MS.gene57920.t1 | AT5G63770 | 31.398 | 379 | 185 | 12 | 85 | 457 | 342 | 651 | 9.57e-40 | 152 |
| MS.gene57920.t1 | AT5G63770 | 31.398 | 379 | 185 | 12 | 85 | 457 | 342 | 651 | 9.57e-40 | 152 |
| MS.gene57920.t1 | AT5G07920 | 26.667 | 390 | 218 | 8 | 69 | 457 | 345 | 667 | 1.52e-35 | 140 |
| MS.gene57920.t1 | AT5G07920 | 26.667 | 390 | 218 | 8 | 69 | 457 | 345 | 667 | 1.79e-35 | 140 |
| MS.gene57920.t1 | AT5G07920 | 26.667 | 390 | 218 | 8 | 69 | 457 | 345 | 667 | 1.79e-35 | 140 |
Find 133 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTTTAACGGTTGTGCTTTC+AGG | 0.194556 | 8.4:-5717512 | None:intergenic |
| CAATACCTTCTCTAAATATT+CGG | 0.239609 | 8.4:-5723153 | None:intergenic |
| TTCCAGTCACTTGTGGTTGA+TGG | 0.249023 | 8.4:+5725640 | MS.gene57920:CDS |
| GTCGAGAAGTCCTTGCTTAA+TGG | 0.269950 | 8.4:-5725592 | None:intergenic |
| TTCTCTAAATATTCGGGTTT+CGG | 0.273611 | 8.4:-5723146 | None:intergenic |
| CCTCATGAATTTGTATTGTA+TGG | 0.279317 | 8.4:+5716359 | MS.gene57920:CDS |
| TGGCTGCAGATTATTTATTC+TGG | 0.279756 | 8.4:+5719669 | MS.gene57920:intron |
| CTTGCTTAATGGCTGTTTCC+AGG | 0.281576 | 8.4:-5725581 | None:intergenic |
| GATGGGCGCTTGGAAATATT+TGG | 0.297116 | 8.4:+5724037 | MS.gene57920:CDS |
| ACTTGTGGTTGATGGATCTT+AGG | 0.299880 | 8.4:+5725648 | MS.gene57920:CDS |
| AACAAGTTGCAATTCCTAAA+AGG | 0.322384 | 8.4:+5722814 | MS.gene57920:CDS |
| TTCTCCATCCATTTGCAAAT+AGG | 0.327473 | 8.4:-5725557 | None:intergenic |
| CCGTCATGGTCCTGCTCTTA+AGG | 0.349409 | 8.4:+5716039 | MS.gene57920:CDS |
| TCAAATACCTTGTTTGCAAT+TGG | 0.350170 | 8.4:-5719263 | None:intergenic |
| ATTGTATGGATTGGCTTGTT+TGG | 0.356562 | 8.4:+5716373 | MS.gene57920:CDS |
| GAGGTGATGGTACAGTTGGC+TGG | 0.363009 | 8.4:+5716944 | MS.gene57920:CDS |
| GTTCTTCACTCATGAGTTGC+TGG | 0.364034 | 8.4:-5716069 | None:intergenic |
| CTTCTCCTTCAGCACGATTC+CGG | 0.370424 | 8.4:-5715961 | None:intergenic |
| GGTACAGTTGGCTGGGTGTT+AGG | 0.374413 | 8.4:+5716952 | MS.gene57920:CDS |
| TCTGCTGGCTTCAAACAATA+TGG | 0.378630 | 8.4:-5717536 | None:intergenic |
| TGGTTGATTGGACAGGTTGC+TGG | 0.390836 | 8.4:+5716922 | MS.gene57920:intron |
| GTACAAGTGATCCAGGTCTA+AGG | 0.395485 | 8.4:+5719727 | MS.gene57920:CDS |
| CAAACAATATGGTGGTTTAA+CGG | 0.401480 | 8.4:-5717525 | None:intergenic |
| CCGCCGGCGAAACTCGTTAC+CGG | 0.415371 | 8.4:+5715942 | MS.gene57920:CDS |
| ATGGATGCACAAGTGGCTTA+TGG | 0.416644 | 8.4:+5719197 | MS.gene57920:CDS |
| ATTGCTGACTTCCAAGCAAA+AGG | 0.420925 | 8.4:-5717169 | None:intergenic |
| CGGGTTTCGGTTTACCCCAT+GGG | 0.420986 | 8.4:-5723133 | None:intergenic |
| TTCTGGTTACAGTTGTACTC+AGG | 0.426377 | 8.4:+5719686 | MS.gene57920:CDS |
| AATACCTTCTCTAAATATTC+GGG | 0.427745 | 8.4:-5723152 | None:intergenic |
| ACGATCCCAACCGGAGGAAC+TGG | 0.429369 | 8.4:-5717009 | None:intergenic |
| GCTTGTTTGGAGATGTTGGC+TGG | 0.436043 | 8.4:+5716386 | MS.gene57920:CDS |
| TGTGCTTTCAGGCATTGAAA+TGG | 0.437118 | 8.4:-5717501 | None:intergenic |
| GAATCTTCCGTCGTTGATGA+TGG | 0.440309 | 8.4:-5715764 | None:intergenic |
| TTGCTTAATGGCTGTTTCCA+GGG | 0.442006 | 8.4:-5725580 | None:intergenic |
| GAGAGCCAGTTCCTCCGGTT+GGG | 0.444622 | 8.4:+5717004 | MS.gene57920:CDS |
| GCTCGTAGCGGCGGCCGTCA+TGG | 0.460713 | 8.4:+5716025 | MS.gene57920:CDS |
| CGCTGCTCCGACTTCACCTA+TGG | 0.460730 | 8.4:+5715988 | MS.gene57920:CDS |
| ATTGGCTTGTTTGGAGATGT+TGG | 0.461764 | 8.4:+5716382 | MS.gene57920:CDS |
| TTGGAGATGTTGGCTGGTCT+AGG | 0.463541 | 8.4:+5716392 | MS.gene57920:CDS |
| ACTCTTCAAAAGGCTAGTGC+TGG | 0.470858 | 8.4:+5717199 | MS.gene57920:CDS |
| TACACAGGGCATAGAAATTG+AGG | 0.472915 | 8.4:+5718509 | MS.gene57920:intron |
| GTTACAGTTGTACTCAGGGC+TGG | 0.473706 | 8.4:+5719691 | MS.gene57920:CDS |
| TCGGGTTTCGGTTTACCCCA+TGG | 0.477232 | 8.4:-5723134 | None:intergenic |
| CCGGTTGGGATCGTACCACT+TGG | 0.483385 | 8.4:+5717018 | MS.gene57920:CDS |
| CGAGAGCCAGTTCCTCCGGT+TGG | 0.485306 | 8.4:+5717003 | MS.gene57920:CDS |
| TCAGGCAGCAGCTATTCGAT+TGG | 0.487162 | 8.4:+5725507 | MS.gene57920:intron |
| GAACTGGCTCTCGGCCTAGC+TGG | 0.489743 | 8.4:-5716993 | None:intergenic |
| TTCTTTGTCAATACGCATAC+CGG | 0.490392 | 8.4:-5715843 | None:intergenic |
| AGGCCGAGAGCCAGTTCCTC+CGG | 0.492856 | 8.4:+5716999 | MS.gene57920:CDS |
| TGGAGTCTTTCCTTAAGAGC+AGG | 0.493393 | 8.4:-5716049 | None:intergenic |
| AATCAAAAGAACTCTTCAAA+AGG | 0.497415 | 8.4:+5717189 | MS.gene57920:CDS |
| GCAACTCATGAGTGAAGAAC+AGG | 0.500206 | 8.4:+5716072 | MS.gene57920:CDS |
| TGAATTTGTATTGTATGGAT+TGG | 0.505619 | 8.4:+5716364 | MS.gene57920:CDS |
| CCAAGTGGTACGATCCCAAC+CGG | 0.507630 | 8.4:-5717018 | None:intergenic |
| GCTTTGAATCTTCATAGCTA+TGG | 0.508494 | 8.4:+5723098 | MS.gene57920:CDS |
| ATCCATCAACCACAAGTGAC+TGG | 0.509623 | 8.4:-5725642 | None:intergenic |
| TCTGGTTACAGTTGTACTCA+GGG | 0.510306 | 8.4:+5719687 | MS.gene57920:CDS |
| AGGTGATGGTACAGTTGGCT+GGG | 0.511392 | 8.4:+5716945 | MS.gene57920:CDS |
| CGACATTCGTGGAGATAAAG+AGG | 0.512527 | 8.4:+5725611 | MS.gene57920:CDS |
| GGAGCCTTTCCAGTCACTTG+TGG | 0.512535 | 8.4:+5725633 | MS.gene57920:CDS |
| TGATGTCGCCGATGGGCGCT+TGG | 0.512611 | 8.4:+5724027 | MS.gene57920:CDS |
| AATCTTCATAGCTATGGAAG+TGG | 0.516129 | 8.4:+5723104 | MS.gene57920:CDS |
| TCAAGAGTGAACTCTTCTGC+TGG | 0.516180 | 8.4:-5717551 | None:intergenic |
| GTTGATTCCTTTCAGTGTAA+GGG | 0.518255 | 8.4:+5723067 | MS.gene57920:intron |
| GATAAAGTTAAAAGTTATGA+AGG | 0.519169 | 8.4:+5718543 | MS.gene57920:CDS |
| ACACCTTGTACAAGTGATCC+AGG | 0.519749 | 8.4:+5719720 | MS.gene57920:CDS |
| GAAATATTTGGTCTAAAGCA+AGG | 0.525226 | 8.4:+5724049 | MS.gene57920:CDS |
| CAAGGACTTCTCGACATTCG+TGG | 0.525494 | 8.4:+5725600 | MS.gene57920:CDS |
| CGATTGGAACTCAGAGGTGG+AGG | 0.526476 | 8.4:+5725523 | MS.gene57920:CDS |
| GTTGAAGCTGATGTCGCCGA+TGG | 0.528088 | 8.4:+5724019 | MS.gene57920:CDS |
| AATTGGACCACTTGCAAGGT+AGG | 0.529236 | 8.4:-5719246 | None:intergenic |
| TTTGCGGATGCATATCAAAA+GGG | 0.530171 | 8.4:+5722773 | MS.gene57920:CDS |
| GTTCAATCAATTCGCGGCTG+CGG | 0.530298 | 8.4:+5715815 | MS.gene57920:CDS |
| AATGCCTATTTGCAAATGGA+TGG | 0.531940 | 8.4:+5725553 | MS.gene57920:CDS |
| GGTCAGTTCATCGGTTGGAT+AGG | 0.535105 | 8.4:+5717221 | MS.gene57920:CDS |
| TGCTGGGTCAGTTCATCGGT+TGG | 0.535371 | 8.4:+5717216 | MS.gene57920:CDS |
| TCACTCGTTCAATCAATTCG+CGG | 0.536644 | 8.4:+5715809 | MS.gene57920:CDS |
| AAGTGGTCCAATTGCAAACA+AGG | 0.538010 | 8.4:+5719256 | MS.gene57920:CDS |
| TACAGGAATGGATGCACAAG+TGG | 0.540121 | 8.4:+5719190 | MS.gene57920:intron |
| GGACAGGAAATGATCTGTCT+AGG | 0.542405 | 8.4:+5717040 | MS.gene57920:CDS |
| ATTGGACCACTTGCAAGGTA+GGG | 0.543346 | 8.4:-5719245 | None:intergenic |
| ATTCGCGGCTGCGGTCTCTC+CGG | 0.543376 | 8.4:+5715824 | MS.gene57920:CDS |
| CAACCGGAGGAACTGGCTCT+CGG | 0.543777 | 8.4:-5717002 | None:intergenic |
| GCTGGAGGTGATGGTACAGT+TGG | 0.549247 | 8.4:+5716940 | MS.gene57920:CDS |
| CTCTTCAAAAGGCTAGTGCT+GGG | 0.554753 | 8.4:+5717200 | MS.gene57920:CDS |
| TAACGAGTTTCGCCGGCGGA+AGG | 0.556540 | 8.4:-5715938 | None:intergenic |
| CACTGCGAAGCACATTGCTC+AGG | 0.557864 | 8.4:+5724105 | MS.gene57920:CDS |
| TTCATCAATGCTCGTAGCGG+CGG | 0.558633 | 8.4:+5716016 | MS.gene57920:CDS |
| CTTACAGAACTTCACCAGCT+AGG | 0.563172 | 8.4:+5716979 | MS.gene57920:CDS |
| GGCAGGTCCTACCTTAGACC+TGG | 0.567044 | 8.4:-5719738 | None:intergenic |
| CTAGTGCTGGGTCAGTTCAT+CGG | 0.567521 | 8.4:+5717212 | MS.gene57920:CDS |
| GGACAGGTTGCTGGAGGTGA+TGG | 0.578855 | 8.4:+5716931 | MS.gene57920:intron |
| AGAAGAGTTCACTCTTGACC+AGG | 0.580628 | 8.4:+5717556 | MS.gene57920:CDS |
| CGTTACCGGAATCGTGCTGA+AGG | 0.583487 | 8.4:+5715956 | MS.gene57920:CDS |
| GGGATCGTACCACTTGGGAC+AGG | 0.586302 | 8.4:+5717024 | MS.gene57920:CDS |
| CGTCTTCAAGATCCTTCCGC+CGG | 0.586425 | 8.4:+5715926 | MS.gene57920:CDS |
| ACACAGGGCATAGAAATTGA+GGG | 0.587539 | 8.4:+5718510 | MS.gene57920:intron |
| TATTTGGTCTAAAGCAAGGA+TGG | 0.591422 | 8.4:+5724053 | MS.gene57920:CDS |
| GGAAGGATCTTGAAGACGAA+TGG | 0.596170 | 8.4:-5715921 | None:intergenic |
| GCTGGCTTCAAACAATATGG+TGG | 0.597018 | 8.4:-5717533 | None:intergenic |
| AAATATTTCCAAGCGCCCAT+CGG | 0.600632 | 8.4:-5724035 | None:intergenic |
| TTGAAGCTGATGTCGCCGAT+GGG | 0.603944 | 8.4:+5724020 | MS.gene57920:CDS |
| ATTCCGGTAACGAGTTTCGC+CGG | 0.607616 | 8.4:-5715945 | None:intergenic |
| TTGCAATTGGACCACTTGCA+AGG | 0.608216 | 8.4:-5719250 | None:intergenic |
| CGGTTGGGATCGTACCACTT+GGG | 0.611838 | 8.4:+5717019 | MS.gene57920:CDS |
| AAGGGTTAGTAGCTCAGAGT+GGG | 0.612993 | 8.4:+5722791 | MS.gene57920:CDS |
| AAAACAACCATAGGTGAAGT+CGG | 0.613615 | 8.4:-5715995 | None:intergenic |
| GAAACCCGAATATTTAGAGA+AGG | 0.617062 | 8.4:+5723148 | MS.gene57920:CDS |
| TGGAAGTGGAAGAAACCCAT+GGG | 0.618920 | 8.4:+5723118 | MS.gene57920:CDS |
| TGGAACTCAGAGGTGGAGGG+TGG | 0.620269 | 8.4:+5725527 | MS.gene57920:CDS |
| TACTATAATTACTTCAGCAT+AGG | 0.621552 | 8.4:+5718570 | MS.gene57920:CDS |
| AGACCTGGATCACTTGTACA+AGG | 0.622271 | 8.4:-5719723 | None:intergenic |
| ATGGAAGTGGAAGAAACCCA+TGG | 0.623431 | 8.4:+5723117 | MS.gene57920:CDS |
| CCTTAAGAGCAGGACCATGA+CGG | 0.625874 | 8.4:-5716039 | None:intergenic |
| ATGGCATGCATCGTTTGTCA+TGG | 0.631736 | 8.4:+5724072 | MS.gene57920:CDS |
| CATAGGTGAAGTCGGAGCAG+CGG | 0.638005 | 8.4:-5715987 | None:intergenic |
| CCATACAATACAAATTCATG+AGG | 0.639199 | 8.4:-5716359 | None:intergenic |
| GCATTGATGAAAACAACCAT+AGG | 0.640067 | 8.4:-5716004 | None:intergenic |
| CTGGAAACAGCCATTAAGCA+AGG | 0.643944 | 8.4:+5725582 | MS.gene57920:CDS |
| GATTGGAACTCAGAGGTGGA+GGG | 0.644095 | 8.4:+5725524 | MS.gene57920:CDS |
| TTGATTGGACAGGTTGCTGG+AGG | 0.644128 | 8.4:+5716925 | MS.gene57920:intron |
| ATTCGATTGGAACTCAGAGG+TGG | 0.649746 | 8.4:+5725520 | MS.gene57920:CDS |
| TGCAAATGGATGGAGAACCC+TGG | 0.649973 | 8.4:+5725563 | MS.gene57920:CDS |
| GACATTCGTGGAGATAAAGA+GGG | 0.654894 | 8.4:+5725612 | MS.gene57920:CDS |
| CCGGTAACGAGTTTCGCCGG+CGG | 0.670333 | 8.4:-5715942 | None:intergenic |
| TCAACCACAAGTGACTGGAA+AGG | 0.671181 | 8.4:-5725637 | None:intergenic |
| ATCATCGCCATCATCAACGA+CGG | 0.672119 | 8.4:+5715757 | MS.gene57920:CDS |
| AGATCATTTCCTGTCCCAAG+TGG | 0.676643 | 8.4:-5717033 | None:intergenic |
| ATTGCGAAGCGAAGATACTG+TGG | 0.680424 | 8.4:-5715890 | None:intergenic |
| GCTATTCGATTGGAACTCAG+AGG | 0.692601 | 8.4:+5725517 | MS.gene57920:CDS |
| AAAGGGTTAGTAGCTCAGAG+TGG | 0.694724 | 8.4:+5722790 | MS.gene57920:CDS |
| AGTGGTACGATCCCAACCGG+AGG | 0.744964 | 8.4:-5717015 | None:intergenic |
| GGAAGTGGAAGAAACCCATG+GGG | 0.785636 | 8.4:+5723119 | MS.gene57920:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 5715752 | 5725669 | 5715752 | ID=MS.gene57920 |
| chr8.4 | mRNA | 5715752 | 5725669 | 5715752 | ID=MS.gene57920.t1;Parent=MS.gene57920 |
| chr8.4 | exon | 5715752 | 5716093 | 5715752 | ID=MS.gene57920.t1.exon1;Parent=MS.gene57920.t1 |
| chr8.4 | CDS | 5715752 | 5716093 | 5715752 | ID=cds.MS.gene57920.t1;Parent=MS.gene57920.t1 |
| chr8.4 | exon | 5716335 | 5716457 | 5716335 | ID=MS.gene57920.t1.exon2;Parent=MS.gene57920.t1 |
| chr8.4 | CDS | 5716335 | 5716457 | 5716335 | ID=cds.MS.gene57920.t1;Parent=MS.gene57920.t1 |
| chr8.4 | exon | 5716937 | 5717074 | 5716937 | ID=MS.gene57920.t1.exon3;Parent=MS.gene57920.t1 |
| chr8.4 | CDS | 5716937 | 5717074 | 5716937 | ID=cds.MS.gene57920.t1;Parent=MS.gene57920.t1 |
| chr8.4 | exon | 5717157 | 5717242 | 5717157 | ID=MS.gene57920.t1.exon4;Parent=MS.gene57920.t1 |
| chr8.4 | CDS | 5717157 | 5717242 | 5717157 | ID=cds.MS.gene57920.t1;Parent=MS.gene57920.t1 |
| chr8.4 | exon | 5717490 | 5717577 | 5717490 | ID=MS.gene57920.t1.exon5;Parent=MS.gene57920.t1 |
| chr8.4 | CDS | 5717490 | 5717577 | 5717490 | ID=cds.MS.gene57920.t1;Parent=MS.gene57920.t1 |
| chr8.4 | exon | 5718516 | 5718591 | 5718516 | ID=MS.gene57920.t1.exon6;Parent=MS.gene57920.t1 |
| chr8.4 | CDS | 5718516 | 5718591 | 5718516 | ID=cds.MS.gene57920.t1;Parent=MS.gene57920.t1 |
| chr8.4 | exon | 5719195 | 5719277 | 5719195 | ID=MS.gene57920.t1.exon7;Parent=MS.gene57920.t1 |
| chr8.4 | CDS | 5719195 | 5719277 | 5719195 | ID=cds.MS.gene57920.t1;Parent=MS.gene57920.t1 |
| chr8.4 | exon | 5719678 | 5719748 | 5719678 | ID=MS.gene57920.t1.exon8;Parent=MS.gene57920.t1 |
| chr8.4 | CDS | 5719678 | 5719748 | 5719678 | ID=cds.MS.gene57920.t1;Parent=MS.gene57920.t1 |
| chr8.4 | exon | 5722758 | 5722835 | 5722758 | ID=MS.gene57920.t1.exon9;Parent=MS.gene57920.t1 |
| chr8.4 | CDS | 5722758 | 5722835 | 5722758 | ID=cds.MS.gene57920.t1;Parent=MS.gene57920.t1 |
| chr8.4 | exon | 5723082 | 5723169 | 5723082 | ID=MS.gene57920.t1.exon10;Parent=MS.gene57920.t1 |
| chr8.4 | CDS | 5723082 | 5723169 | 5723082 | ID=cds.MS.gene57920.t1;Parent=MS.gene57920.t1 |
| chr8.4 | exon | 5724010 | 5724126 | 5724010 | ID=MS.gene57920.t1.exon11;Parent=MS.gene57920.t1 |
| chr8.4 | CDS | 5724010 | 5724126 | 5724010 | ID=cds.MS.gene57920.t1;Parent=MS.gene57920.t1 |
| chr8.4 | exon | 5725511 | 5725669 | 5725511 | ID=MS.gene57920.t1.exon12;Parent=MS.gene57920.t1 |
| chr8.4 | CDS | 5725511 | 5725669 | 5725511 | ID=cds.MS.gene57920.t1;Parent=MS.gene57920.t1 |
| Gene Sequence |
| Protein sequence |
