AlfalfaGEDB | MS.gene58039

M. sativa cultivar XinJiangDaYe / MS.gene58039

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005515
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene58039.t1	XP_024636874.1	97.8	857	19	0	25	881	1	857	0.00E+00	1605.9

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene58039.t1	A4IFB6	25.9	854	434	23	59	879	30	717	7.9e-46	187.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene58039.t1	G7JFC6	97.8	857	19	0	25	881	1	857	0.0e+00	1605.9

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049283	MS.gene58039	0.821624	3.66E-53	-1.69E-46
MS.gene050213	MS.gene58039	0.80427	2.34E-49	-1.69E-46
MS.gene050945	MS.gene58039	0.809916	1.49E-50	-1.69E-46
MS.gene051234	MS.gene58039	0.812186	4.81E-51	-1.69E-46
MS.gene052775	MS.gene58039	0.817224	3.68E-52	-1.69E-46
MS.gene053122	MS.gene58039	0.8101	1.36E-50	-1.69E-46
MS.gene054142	MS.gene58039	0.802776	4.78E-49	-1.69E-46
MS.gene054957	MS.gene58039	0.806399	8.38E-50	-1.69E-46
MS.gene055513	MS.gene58039	0.802783	4.76E-49	-1.69E-46
MS.gene056045	MS.gene58039	0.802134	6.48E-49	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 199 sgRNAs with CRISPR-Local

Find 430 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGGAGGCAACTTGTTG+TGG	0.594821	8.3:-11690889	MS.gene58039:CDS
AAACAAACCTAACGATCCAA+AGG	0.627463	8.3:-11695733	MS.gene58039:intron
AAACATCGAGCTGCAAGTAT+TGG	0.514563	8.3:+11691062	None:intergenic
AAAGATTGATCCCATAAAAG+AGG	0.514143	8.3:-11693199	MS.gene58039:intron
AAAGCTGGCCACTTTCTCAC+AGG	0.580528	8.3:-11691141	MS.gene58039:CDS
AAAGGGGATGATTGCGGTCC+AGG	0.399591	8.3:-11690828	MS.gene58039:CDS
AAAGTTGCTTTGGGGTCCAA+AGG	0.549173	8.3:-11693498	MS.gene58039:CDS
AAATTATCTTTCTAGGGCTT+TGG	0.297084	8.3:-11691528	MS.gene58039:CDS
AACATAAACTGCGGTAAGTG+TGG	0.574544	8.3:+11689990	None:intergenic
AACCTCTCTAGGCTATTATC+TGG	0.370844	8.3:-11693275	MS.gene58039:intron

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAGTCGAAATAATGACCT+AGG	+	chr8.3:11691572-11691591	None:intergenic	30.0%
AAAATGTGCTGCAATTGATA+AGG	-	chr8.3:11693444-11693463	MS.gene58039:CDS	30.0%
AAAGATTGATCCCATAAAAG+AGG	-	chr8.3:11692675-11692694	MS.gene58039:intron	30.0%
AAATGTGCTGCAATTGATAA+GGG	-	chr8.3:11693445-11693464	MS.gene58039:CDS	30.0%
AATGTTTACCAAGTAAAAGC+TGG	-	chr8.3:11692052-11692071	MS.gene58039:intron	30.0%
AATTGGAATACAGAAATCGA+AGG	+	chr8.3:11689929-11689948	None:intergenic	30.0%
ACAAGTTAAGAAATACTGGT+GGG	-	chr8.3:11691930-11691949	MS.gene58039:intron	30.0%
ACCTAACAGCATAATAAACA+AGG	-	chr8.3:11693744-11693763	MS.gene58039:intron	30.0%
ACTTGAGAAAGCCAATATAT+TGG	-	chr8.3:11695822-11695841	MS.gene58039:CDS	30.0%
ATCAAGTAATAGAACAGACA+CGG	-	chr8.3:11694583-11694602	MS.gene58039:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.3	gene	11689888	11696008	11689888	ID=MS.gene58039
chr8.3	mRNA	11689888	11696008	11689888	ID=MS.gene58039.t1;Parent=MS.gene58039
chr8.3	exon	11695734	11696008	11695734	ID=MS.gene58039.t1.exon1;Parent=MS.gene58039.t1
chr8.3	CDS	11695734	11696008	11695734	ID=cds.MS.gene58039.t1;Parent=MS.gene58039.t1
chr8.3	exon	11694511	11694597	11694511	ID=MS.gene58039.t1.exon2;Parent=MS.gene58039.t1
chr8.3	CDS	11694511	11694597	11694511	ID=cds.MS.gene58039.t1;Parent=MS.gene58039.t1
chr8.3	exon	11693404	11693586	11693404	ID=MS.gene58039.t1.exon3;Parent=MS.gene58039.t1
chr8.3	CDS	11693404	11693586	11693404	ID=cds.MS.gene58039.t1;Parent=MS.gene58039.t1
chr8.3	exon	11693200	11693286	11693200	ID=MS.gene58039.t1.exon4;Parent=MS.gene58039.t1
chr8.3	CDS	11693200	11693286	11693200	ID=cds.MS.gene58039.t1;Parent=MS.gene58039.t1
chr8.3	exon	11693019	11693090	11693019	ID=MS.gene58039.t1.exon5;Parent=MS.gene58039.t1
chr8.3	CDS	11693019	11693090	11693019	ID=cds.MS.gene58039.t1;Parent=MS.gene58039.t1
chr8.3	exon	11689888	11691831	11689888	ID=MS.gene58039.t1.exon6;Parent=MS.gene58039.t1
chr8.3	CDS	11689888	11691831	11689888	ID=cds.MS.gene58039.t1;Parent=MS.gene58039.t1

Gene Sequence

>MS.gene58039

GTCTTCTTCTCTCTCTCTCTTCCCCAAAACCCTTTCAACCTTCGATTTCTGTATTCCAATTCCTCGATCTCGCTATGGAATCTCGAGATTTGACATCTTCTTCTCCTTCTTCAACCACCAACCGCGACTCTCCTTCCGCCGAAGTCGACGACGGCGTTTTCGCTCTCACCGTCGCTCTTGCCAAAGACGCTTCTTTGCATTATCAATCTGGCAAGTTCGCTGAATGTGTTGATGTCATGCAACATCTCTTGCTAAACAAACCTAACGATCCAAAGGTATTCAATCTAATTCAATTGATTCCGATTGCTTTGATTTCGTTTTCATCTTAATTGCTTCGTATTAGGTTTAATTGATTAATTACTTTGATTTTGTTATTTTCTTCGTGAGGTAAAAATTAAGTTGCTAATTTATCAGTTTAATTAAGTTGTTAATTTATCAGTTTAATTAAGTTTTCTGTTGCTGTCGATTGTTAAATGTGTATAAGTTAATATATTGATATGAAATTATGATTGAAGAGTGTAGAAAGTATGTGAATTAGTTGGATAAGTTTGTTATAAGCTGCTTTGAGTAGATGCTTGCAGCAATCTGTTTGATTTGATACCATGTGATGTGATGTAAGTAACGAGTATCGGAAAGAAAATTTTATTAGATCGGCGATGAAGCGGATCTCACTATAGAAAGTTTGAAAGTTCCAATAGTTGTGCTAAAAGGGGGATTTTGAGTTTATTTTCTTGATAAGGGCAATTTTTATGAGTTGGTTTATTTTGTTATTAGTGACATTGATGCTACTTGATTTTCGGTATATTTGTATACATGACAGTTACTGGTCTCACCTAAGGTGCAGCTCTAAGTCAAACATAGTAAATTGAGTAATGATAATATCATGGCTGCAGTGTTACTTTTCTTCATGAATGGTTAAGATTGTGCACATACTTTGCATATTTAGAATTTTAAATGTTTTGGGCCTTTTAGCTCTCAATGCGTAGATCTTTCTTACATCTTTCTGTATTATTACGACGGATAATTAGTATATGCTATATGATAAATTTAAATAATTGAATCATTATTTGTTTGTTTGGCTGTGTGCGTGCATGCATGTATGTAGGTGTTTTCGAGTTTATGCATATTTTGTTTGTGCTCTCTAGTATCTGTTACAAGTTCACAGTTAAAAGTCGTAAGTATTCAGTATGTGATTTATTTTGGGGATGGTATTTGCGACATCAATTATGTTTGTAGAATAATGAAAATCTTTATCATCCATTTTCAAGCTTGTTAAGAGCAAAGGACAATGATTTTGGTGGGTTCATGAGTTAATATAACCCATCAAGCCTTGAGTTATCTTTTCGTTGTGTATTTTATGATGTAGTCCACAATTCTTTTTTCTAAGTCTTGAAGTTCCTATATATTTCAGGTACTTCATAATATAGCAATTGCGGAATTCTTCCGAGATGGTTGTTCTGATCCCAAAAAGTTGCTTGAAGTAATTTATAGCATCAAGGTATGTTACTTTTACACGTATGGTATTCTATTAAAAATTCCAGTCTCAATTTTGCAATAGCTTTAGTTTTTCATGTTTGGTATTTGAGGAAACTATTTTTTTTTTTTTACCGTTATGTATTAGAAAACTGAAATTGAATGACACTAATAGAAATCACGACAGCAAGATTAAAATGAAGGTAGACCTAGGTCATTATTTCGACTTTTGTAAACAAAAAGTTTGGCTAATTTCCGAGCCTTTGATACTTATTCATGTAAATATTTTGGGGCCAATTAATTTCCCAATTGGCAAATGGCTTCGGTAGATGGAATGAGTGTTTTCAATTGTTGAAGGCCTTATTTGTTATTGATAGTTTCCCATTATTTTAATGCGTGAGTTTGGTTTCCTTCATTTGAATAAAAGAATACATATAAGTTTCCACTACCTTTTGTACCCAGTATACTGTGGTTGGTGACATTTTTTGTTCAAATTCCTTCTTCTGGGTCTCTATTGGTATTCTTAAAGCAGGAAAATATATATGCAAATAACCTGAAAGATAATATTTACAAGTTAAGAAATACTGGTGGGGATGAGTGGAATAGGATTTTCTGTTAGAATTCATCTGAAAGATAATATTATAAGTTAGGAAATACTGGTGTAGATGAGTGGAATAGGATTTTCTCTTAGAATGTTTACCAAGTAAAAGCTGGTGCAGAAGATAGGAATTCGTGTTTACATGCCTACAGCATGTAGACTTTTATGTTCTCTCTTCTGTTATGGTTTACCCCCAATGAAAGGATCAACTGGTGTTTCGCCTTCAAATACGTTTTATATTCAACTTAATGCTGTTCAGGATCTATAAAATTGCAGCTTAAGCTCTCTTCTCTATTCATTTGTGATTCTGTACTTACTACTTATCCTTTTTTTCTTTGGGAGTTTATTCAGAGAAAATATGGCGAGCTTTCCCTGACGTATGTGGATCAAGGAGAGCTAGTTAACAACGTTGGAAATAAAGTTGCTTTGGGGTCCAAAGGAAGCAATGCCTTAGCACCGCAGTTTTCAGGTGTAAATAGCACTGACACAATGCATCCAGATGAATTTGACTCTTCCGTCGCAACACTAAATATTGTATGCTCATTTTGATCCTTATATCAATTTCAATTAACTTTGTCAATTGTTGTTTTGATTATACTTTTGATTTGAATATATTTCTTGATGTAATTTTTGTTATTTCAACCTCTCTAGGCTATTATCTGGTTCCATCTTCATGACTATGCAAAGACGGTATCGGTTTTGGAACCCCTATTTCAAAAGATTGATCCCATAAAAGAGGTATGGTATATATTATAATACTATTTGATGTTATTTTCTTTAAAAATTATAATGGGGGTGTTAATGGATTTATTTTTCCCCTAACTCTGTGTTCTCTTTCCTAAAGCAGTCAACGGCTCTACATATTTGTCTTCTGCTGCTTGATGCTAGCCTTGCATGCCATGATGCATCAAAATCAGCTGTAAGTTCTCTACGATAATATTATATTAGCTGGTTTATTTTTTAATGATTGCAAGGTCTGTTGCTTAATGCACTGCTGACAAATATGATTTTCACATCTCATGAGTGTATTGTTTTTCTTACTTCTTTTATTAGCGGGGCTGGTTATTTTCAATAAATATTAAATGTTGTATTGTATATGCATTTTTCAATTTAAATTTACATTAAACAGTTGAACTACAAATGTCTCTCCTGTTGCAACTCAAATTCTTCTTCCCAAGCTAATGTTGGGCATGATTGGCTGAATGTTTTCATTGGTGATTTGTCGAGTTAATCTGTTTTAATCCTTTATTTGCAGCTGTCTGGAGGTTTTCTTTGTTGTGCATAAATGATATACTTATATGTAATTCTCAGTTGTCCGAGAGAGAAATCAATTTATGCTGATTATAAATACATTATTTGTTGAGATTTGTGCATTCTCATGGGGGGTGAGATACATAAATGTTGGGTCTATGCACAGAAAATGTGGGTTTGCTGTATGTGTATATCTAAGGGAGATAGGATGGGAAATATTGAAAACACCCACTCAAAATGTGCTGCAATTGATAAGGGAGAAGTTTAAAAAGGGAGGGATTACTGAAGGGGCTATCTTTTTTTTTTTTTTTTTTTTTTGAGGGGATAACTGAAGGGGCTAACTTGAAATTAGCAATTGGTTTGGGTGGTTTGGGTCTGGGAATTGGATATATCTTTTATTGTTTGTTACTGATCATTTTGCAAGGAGCATAGCTCAATTTCATTGCCATTTACTTTACTGTTTTATTCATCTTGTAGAGAGGATTAATCCTCTATTATCATTACTTCTGGGTTTTCTTCTATTCCGATTTTGGTACCTAACAGCATAATAAACAAGGATATACCAGGATCTATATTCTGTATATTTTGCTTCACCATCTCTATTAATGTGATTAAACTGAAAGTTTGTTGTAGAATTGGGTTTACTTGACTTGATTGTTTTCTCTGATTAAAGATTATGTAAAACTTTCTTGATAGCTGGCATAAATTCCTGCACTCATAGTTGCAGACTCTCTGTTAGGAACTAATCTCTGTCTTAATTTTGTTAGTCAATGGGAAGAGATTTCATTTTTGTTTGCCTTTTTAAATTCTCTAATTGTACATGTGCACTATTCTGAGCTGGATCATTTTGCTTAGGATGTGTTGACTTACCTGGAAAGAGCATTTGGTGTTGGTAGTGCGAATCAAGTTGACAATGGGAATACAACACAGCAACAATCTGCAAATCTAACGACAAAGTCTGTACCTGTCACCATTAGTGAATCTGCTGCTGATCCATCCAGTTCCGATTTAGGGTCAAGTGCTAATGCATCTGAAAATAATCTATCCAGAACTTTCTCTGAAGATGGGCTTGATTATGCAGCCATGTTTTTGGATATGGGTTCACAAAATTTAACTAGGCCAGCGGGCCCTCCTTCAAATTATCTTTCTAGGGCTTTGGTTGACAGTGTTTCTACTCTTGATTTAAAGCTCAAGTTGCAACTTTGCAAGGTGCAGTTTCTGATTCTTACTAGGAACCTGAAAACAGCAAAACGAGAAGTCAAGCTGGCGATGAACATTGCACGTGGAAGAGATTCATCCATGGCTCTGATTTTGAAATCTCAGCTTGAATATGCTCGTGGTAACCACCGCAAGGCAATAAAGCTATTGATGGCATCAAGTAATAGAACAGACACGGAGTTTTCGAGCATTTTTAACAACAATCTTGGGTGCATTTATTATCAACTTGGGAAATATCAGACGTCCTCATTCTTCTTCTCGAAGGCATTAACTAATTGTTCGTCGCTGCGGAAGGAGCAGCAAAAAAAGCTGGCCACTTTCTCACAGGATAAATCTCTCCTTATAATTTATAATTGTGGCGTGCAGCACTTGGCTTGTGGAAAGCCAATACTTGCAGCTCGATGTTTTCAGAAGGCAAGTTTGGTCTTCTACAAGCAGCCCCTCTTGTGGCTCCGACTCTCAGAATGCTGTCTGATGGCTTTAGAAAAGGGCCTAATCAAATCATGTCGAGTTCCTTCAGAGAAGATGGAGGTTGGAGTTTGCGTTGTTGGGTTGGAAAAATGGAGGCAACTTGTTGTGGAAGATCAAATTCCAGGTAATGGACACATGGAATCCTCCAAAGGGGATGATTGCGGTCCAGGTGAAGATGGGCGGCTGAAGTTATCGATGTCCCTTGCTCGGCAGTGCCTCTTGAATGCTCTTCACTTGCTAGACTCCTACAGTACAAATCGTTTGAAGTCTGGCTTGCCCTCTAATTCTTCTGTGGAGGATGATACAAGTGAAATGTTGCCTTCAAAGAATTTAAGTCGTAAAAACTCGCATGGCGCTGATTCAAAGGCATTTTCAGTAGCAGTAGGTTTAGGTCAGGTAAATTCAAATGGGGACACAAAAGAACAGAAGGGAGGAGCTAGTCAGGAACTCTTCCAGAACTCCCTCTCGTATTATGAAGATGTCTGTAGAAGAGATAATCAATTGGTCAAGCAAGCTGTTCTAGCTAATTTAGCATATGTGGAGCTGGAATTGGACAATCCTGTGAAGGCACTTGCAGCTGCAAAATCTCTTTTTGAACTTCCAGAATGTTCCAGAATTTACATCTTTCTAGGCCATGTTTATGCGGCAGAGGCTCTTTGCTTGCTGAATAGACCAAAGGAAGCTGCTGATTACTTATCATATTATTTGTCTGGAGGAAACAGTGTTGAATTGCCATTTAGCCAAGACGACTGTGAGAAATTGCAAGTAGAGAGGACTGTTGAATTTGAAGACGTAAATGGAGGATCCACTGCTGCGAAGAATTCTTCTCTTCAGGATCCTCAAAGTATTGTTTTCCTCAAGCCAGAGGAGGCAAGGGCATCAATTTATGCTAACTTTGCTGTAATGTCTGCAATGCAGGGTGAACTTGAGAAAGCCAATATATTGGTTACACAGGCATTGTCCATATTGCCCAACAGTCCAGAGGCCACACTTACCGCAGTTTATGTTGATCTCTTGCTTGGTAAGCCACAAGAAGCTCTAGCCAAACTAAAAAGTTGTAGCCGTATTAGGTTCCTGCCCAGTGGAGTAAGTTTAAATAAATCTTCATGA

Protein sequence

>MS.gene58039.t1

VFFSLSLPQNPFNLRFLYSNSSISLWNLEIUHLLLLLQPPTATLLPPKSTTAFSLSPSLLPKTLLCIINLASSLNVLMSCNISCUTNLTIQRYFIIUQLRNSSEMVVLIPKSCLKUFIASRENMASFPURMWIKESULTTLEIKLLWGPKEAMPUHRSFQVUIALTQCIQMNLTLPSQHUILLLSGSIFMTMQRRYRFWNPYFKRLIPUKSQRLYIFVFCCLMLALHAMMHQNQLMCULTWKEHLVLVVRIKLTMGIQHSNNLQIURQSLYLSPLVNLLLIHPVPIUGQVLMHLKIIYPELSLKMGLIMQPCFWIWVHKIULGQRALLQIIFLGLWLTVFLLLIUSSSCNFARCSFUFLLGTUKQQNEKSSWRUTLHVEEIHPWLUFUNLSLNMLVVTTARQUSYUWHQVIEQTRSFRAFLTTILGAFIINLGNIRRPHSSSRRHULIVRRCGRSSKKSWPLSHRINLSLUFIIVACSTWLVESQYLQLDVFRRQVWSSTSSPSCGSDSQNAVUWLUKRAUSNHVEFLQRRWRLEFALLGWKNGGNLLWKIKFQVMDTWNPPKGMIAVQVKMGGUSYRCPLLGSASUMLFTCUTPTVQIVUSLACPLILLWRMIQVKCCLQRIUVVKTRMALIQRHFQUQUVUVRUIQMGTQKNRREELVRNSSRTPSRIMKMSVEEIINWSSKLFULIUHMWSWNWTILURHLQLQNLFLNFQNVPEFTSFUAMFMRQRLFACUIDQRKLLITYHIICLEETVLNCHLAKTTVRNCKURGLLNLKTUMEDPLLRRILLFRILKVLFSSSQRRQGHQFMLTLLUCLQCRVNLRKPIYWLHRHCPYCPTVQRPHLPQFMLISCLVSHKKLUPNUKVVAVLGSCPVEUVUINLH