AlfalfaGEDB | MS.gene58420

M. sativa cultivar XinJiangDaYe / MS.gene58420

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF02365.18

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene58420.t1	XP_013457910.1	95	360	7	2	1	350	1	359	1.40E-194	688.7

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene58420.t1	Q9FLJ2	57.3	351	117	10	10	350	9	336	6.2e-103	375.6

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene58420.t1	A0A072URG4	95.0	360	7	2	1	350	1	359	1.0e-194	688.7

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene58420.t1	TF	NAC

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049283	MS.gene58420	0.812318	4.50E-51	-1.69E-46
MS.gene052533	MS.gene58420	0.819533	1.10E-52	-1.69E-46
MS.gene054892	MS.gene58420	0.813442	2.55E-51	-1.69E-46
MS.gene054893	MS.gene58420	0.817145	3.84E-52	-1.69E-46
MS.gene055150	MS.gene58420	0.812708	3.70E-51	-1.69E-46
MS.gene055229	MS.gene58420	0.842832	2.03E-58	-1.69E-46
MS.gene056677	MS.gene58420	0.823555	1.30E-53	-1.69E-46
MS.gene057102	MS.gene58420	0.80196	7.04E-49	-1.69E-46
MS.gene05952	MS.gene58420	0.819075	1.40E-52	-1.69E-46
MS.gene05985	MS.gene58420	-0.837311	5.60E-57	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene033113	MS.gene58420	PPI
MS.gene044393	MS.gene58420	PPI
MS.gene061729	MS.gene58420	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene58420.t1	MTR_4g108760	95.000	360	7	2	1	350	1	359	0.0	704
MS.gene58420.t1	MTR_3g435150	66.250	320	79	8	1	309	1	302	2.20e-132	380
MS.gene58420.t1	MTR_6g012670	59.426	244	78	5	12	238	15	254	1.14e-94	285
MS.gene58420.t1	MTR_6g032770	47.514	362	136	12	2	323	3	350	2.29e-93	283
MS.gene58420.t1	MTR_7g085260	43.434	396	165	13	1	350	1	383	2.73e-89	273
MS.gene58420.t1	MTR_3g070030	45.401	337	153	8	11	330	13	335	3.57e-80	249
MS.gene58420.t1	MTR_2g078700	80.282	142	26	1	17	156	23	164	1.07e-79	248
MS.gene58420.t1	MTR_6g084430	63.590	195	56	3	16	195	4	198	1.44e-79	246
MS.gene58420.t1	MTR_7g011130	50.000	266	101	5	11	244	13	278	6.16e-73	230
MS.gene58420.t1	MTR_7g011120	75.352	142	34	1	11	151	2	143	2.75e-72	227

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene58420.t1	AT5G61430	57.746	355	109	12	10	350	9	336	9.65e-134	385
MS.gene58420.t1	AT5G07680	54.270	363	119	14	1	350	1	329	1.37e-120	351
MS.gene58420.t1	AT5G07680	55.043	347	113	14	15	350	1	315	1.17e-116	340
MS.gene58420.t1	AT5G61430	53.846	299	97	12	66	350	2	273	8.41e-95	283
MS.gene58420.t1	AT3G29035	60.081	248	78	5	10	248	17	252	1.87e-93	281
MS.gene58420.t1	AT5G39610	66.038	212	56	3	10	211	13	218	4.30e-92	277
MS.gene58420.t1	AT5G18270	46.567	335	107	8	1	310	5	292	3.79e-88	268
MS.gene58420.t1	AT5G18270	46.269	335	108	8	1	310	5	292	1.25e-87	267
MS.gene58420.t1	AT3G04060	45.833	336	131	7	4	321	7	309	1.25e-82	254
MS.gene58420.t1	AT3G15170	63.107	206	70	4	11	211	15	219	2.00e-82	253

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Find 60 sgRNAs with CRISPR-Local

Find 95 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATAAGGAAGATGAGAAGA+TGG	0.493958	8.3:-15795135	MS.gene58420:CDS
AAGAATACCTTTGCAGCTTT+TGG	0.230826	8.3:+15794578	None:intergenic
AAGTCATTACCTTTACAAAA+AGG	0.312749	8.3:-15795066	MS.gene58420:CDS
AATCAAACAATTGAATGATT+CGG	0.401710	8.3:-15794303	MS.gene58420:CDS
AATTTCTCTGCAAGAGCCAT+TGG	0.466190	8.3:-15795032	MS.gene58420:CDS
ACAAACAGAGCAACAGAAGC+AGG	0.435579	8.3:-15794767	MS.gene58420:CDS
ACAAATGATGAGTGTATCAC+AGG	0.560386	8.3:-15794012	MS.gene58420:CDS
ACAGCTGCAACAGAAGCAGG+TGG	0.707691	8.3:+15793891	None:intergenic
ACCTCAACAAGTCTGAACCT+TGG	0.581627	8.3:-15795001	MS.gene58420:CDS
ACTGATTCGTCGAATTCGAT+TGG	0.482670	8.3:-15794329	MS.gene58420:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATAAGGAAGATGAGAAGA+TGG	-	chr8.3:15793883-15793902	MS.gene58420:CDS	30.0%
ATTGATGTTCAAAGAAACCA+AGG	-	chr8.3:15794764-15794783	MS.gene58420:CDS	30.0%
CAAAAATGGGAGAAAAAGAA+TGG	-	chr8.3:15794183-15794202	MS.gene58420:CDS	30.0%
CCAAGAATTTCATCTTCTAA+TGG	-	chr8.3:15794857-15794876	MS.gene58420:intron	30.0%
CCATTAGAAGATGAAATTCT+TGG	+	chr8.3:15794860-15794879	None:intergenic	30.0%
GGGAAAAAAACACATATTTC+TGG	-	chr8.3:15794608-15794627	MS.gene58420:CDS	30.0%
TCTTTGAACATCAATTGAGT+TGG	+	chr8.3:15794759-15794778	None:intergenic	30.0%
TTATAAGCTCTTCATCAGTT+GGG	+	chr8.3:15793934-15793953	None:intergenic	30.0%
TTCAACAACACAATTTATGG+TGG	-	chr8.3:15794803-15794822	MS.gene58420:CDS	30.0%
ACAAATGATGAGTGTATCAC+AGG	-	chr8.3:15795006-15795025	MS.gene58420:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.3	gene	15793860	15795180	15793860	ID=MS.gene58420
chr8.3	mRNA	15793860	15795180	15793860	ID=MS.gene58420.t1;Parent=MS.gene58420
chr8.3	exon	15794991	15795180	15794991	ID=MS.gene58420.t1.exon1;Parent=MS.gene58420.t1
chr8.3	CDS	15794991	15795180	15794991	ID=cds.MS.gene58420.t1;Parent=MS.gene58420.t1
chr8.3	exon	15794586	15794863	15794586	ID=MS.gene58420.t1.exon2;Parent=MS.gene58420.t1
chr8.3	CDS	15794586	15794863	15794586	ID=cds.MS.gene58420.t1;Parent=MS.gene58420.t1
chr8.3	exon	15793860	15794444	15793860	ID=MS.gene58420.t1.exon3;Parent=MS.gene58420.t1
chr8.3	CDS	15793860	15794444	15793860	ID=cds.MS.gene58420.t1;Parent=MS.gene58420.t1

Gene Sequence

>MS.gene58420

ATGGAAAACGTTTCAGTCTTATCAAATAAGGAAGATGAGAAGATGGATTTGCCTCCTGGATTTCGATTTCACCCAACTGATGAAGAGCTTATAAGTCATTACCTTTACAAAAAGGTTATTGATTCAAATTTCTCTGCAAGAGCCATTGGTGATGTAGACCTCAACAAGTCTGAACCTTGGGATTTACCATGTAAGTAAAACCAATCAAATTTTCAGACCCACTTTTTGTTTTCACCTTTTTTACCACCTTTGAATTTGATATGAATCTTTGTTCATGAATTGAAAACTTTTTTTTGTTTTGAAATTTTGGGTTTTAGTTAAAGCAAAAATGGGAGAAAAAGAATGGTACTTTTTCTGTGTGAGAGACAGAAAATATCCAACTGGGTTGAGGACAAACAGAGCAACAGAAGCAGGGTATTGGAAAGCAACTGGGAAAGATAAAGAAATTTTCAAAGGGAAATCGTTGGTTGGTATGAAGAAAACTCTTGTTTTCTACAAAGGAAGAGCACCTAAAGGAGAAAAAAGTAATTGGGTTATGCATGAATATCGACTTGAGGGTAAATTCTCTGTTCATAATCTTCCAAAAGCTGCAAAGGTATTCTTCTATTCTTCTCTTCTGTTTTTCTCTGTTTTTCTTATTGTACTTAACCATTTTTTTATGCCTTTTGAATTTGAATTTGGATTTGGATTTGATTGTGTTTTGCAGAATGAATGGGTGATTTGTAGGGTTTTTCAGAAGAGTTCAGCTGGGAAAAAAACACATATTTCTGGTATAATGAGGTTGGATTCACTTGGTAATGAATTTGGTTGTTCTGTTTTACCACCACTTACTGATTCGTCGAATTCGATTGGGAAAATCAAACAATTGAATGATTCGGCTTACGTGTCCTGCTTCTCCAACTCAATTGATGTTCAAAGAAACCAAGGAGGGATCTTTGATTCATTCAACAACACAATTTATGGTGGAATTTCTTCACATAATCAACTAGATTTTTTCCCAAGAATTTCATCTTCTAATGGTTCATTATACTCTAATAACCAAGGTGCGGTTAATTTGCAATATCCTAGTTCTGTTTGTGGTATGCAAGATCAAACAATTTTAAGAGCTTTGTATGAAAACAACGGTTTCAAGACTGAGAGACAGCAACAAATGATGAGTGTATCACAGGAAACGGATCTAACTACTGATATGAATGCTGAAACATGTTCTGTTGTGTCAAATTTTGATATTGGTAGAAGGACTTTTGAGAATAATCAGAATCGTCCACCACCTGCTTCTGTTGCAGCTGTTGATTTTCATGGTACTTTGTGGAATTACTAA

Protein sequence

>MS.gene58420.t1

MENVSVLSNKEDEKMDLPPGFRFHPTDEELISHYLYKKVIDSNFSARAIGDVDLNKSEPWDLPFKAKMGEKEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIFKGKSLVGMKKTLVFYKGRAPKGEKSNWVMHEYRLEGKFSVHNLPKAAKKSSAGKKTHISGIMRLDSLGNEFGCSVLPPLTDSSNSIGKIKQLNDSAYVSCFSNSIDVQRNQGGIFDSFNNTIYGGISSHNQLDFFPRISSSNGSLYSNNQGAVNLQYPSSVCGMQDQTILRALYENNGFKTERQQQMMSVSQETDLTTDMNAETCSVVSNFDIGRRTFENNQNRPPPASVAAVDFHGTLWNY