AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene58753


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene58753.t1 MTR_4g116900 95.032 463 22 1 1 462 1 463 0.0 919
MS.gene58753.t1 MTR_4g116910 64.211 475 118 14 3 462 4 441 0.0 571
MS.gene58753.t1 MTR_5g067190 75.556 45 10 1 223 267 2 45 2.31e-16 73.6
MS.gene58753.t1 MTR_5g070310 25.000 328 201 14 167 459 173 490 1.21e-14 76.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene58753.t1 AT1G80710 46.422 517 211 10 7 461 3 515 1.45e-150 439
MS.gene58753.t1 AT5G58760 29.435 248 152 12 167 395 173 416 1.16e-17 85.9
MS.gene58753.t1 AT5G58760 29.435 248 152 12 167 395 75 318 1.90e-17 85.1

Find 134 sgRNAs with CRISPR-Local

Find 191 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCACATCAGGCTCCTATTTC+TGG 0.092960 8.1:+10231858 MS.gene58753:CDS
TGAGTTGGAATCTTTGAATT+TGG 0.175533 8.1:+10231686 MS.gene58753:CDS
GAAGATGGATTTCGACTTTC+AGG 0.196405 8.1:+10233136 MS.gene58753:CDS
TTATATTTCGCTGAGGGTTC+CGG 0.222463 8.1:+10232546 MS.gene58753:CDS
AACAATTGGGGTTTCAGTTT+TGG 0.223709 8.1:-10231406 None:intergenic
GGGAACAAATTCGGGGATAT+TGG 0.240155 8.1:+10231795 MS.gene58753:CDS
GCGGAGGCCAGATTTATATT+TGG 0.258336 8.1:+10233582 MS.gene58753:CDS
CGCATTTGGGTTATCCTTCC+AGG 0.267384 8.1:-10231735 None:intergenic
ACCTGGGATTTGAGATCTAT+TGG 0.273496 8.1:+10232708 MS.gene58753:CDS
TAGCAGCGGGGAACAAATTC+GGG 0.278266 8.1:+10231787 MS.gene58753:CDS
AAACAGTTAGCCTCATTCTT+TGG 0.287246 8.1:-10232525 None:intergenic
TGGAAGGGCAAAACCGCATT+TGG 0.290371 8.1:-10231749 None:intergenic
TGATGATGTTGTTCAAAATC+TGG 0.296005 8.1:+10231518 MS.gene58753:CDS
TATATTTCGCTGAGGGTTCC+GGG 0.299955 8.1:+10232547 MS.gene58753:CDS
GTCTCTCTGTTTGGGATAAC+AGG 0.314995 8.1:+10232571 MS.gene58753:CDS
CTACAATATGAGGGCTTTGC+GGG 0.319271 8.1:-10232656 None:intergenic
GAATCAGAGCCTTTGGAATC+TGG 0.340425 8.1:-10231462 None:intergenic
GGAACAAATTCGGGGATATT+GGG 0.342079 8.1:+10231796 MS.gene58753:CDS
CGATTTCACAGTATACGATT+TGG 0.344728 8.1:-10231373 None:intergenic
GTAGCAGCGGGGAACAAATT+CGG 0.348233 8.1:+10231786 MS.gene58753:CDS
TGAAACAAGATCCCAGAAAT+AGG 0.357504 8.1:-10231870 None:intergenic
TTCTTCTGAAAATTCCTTGT+TGG 0.359136 8.1:-10231619 None:intergenic
GACAGTTCATACCTCTTCAT+TGG 0.362273 8.1:+10233419 MS.gene58753:CDS
CCCATGAAAGATGCTTATAA+AGG 0.372891 8.1:+10231549 MS.gene58753:CDS
GCCTTTATAAGCATCTTTCA+TGG 0.378659 8.1:-10231550 None:intergenic
CCTGGGATTTGAGATCTATT+GGG 0.381614 8.1:+10232709 MS.gene58753:CDS
TGATGGACTTATTCGATTGA+TGG 0.384074 8.1:+10232437 MS.gene58753:CDS
TTGTGGTAGCAGAGCAATAT+GGG 0.386766 8.1:+10233391 MS.gene58753:intron
TTTGTGGTAGCAGAGCAATA+TGG 0.387500 8.1:+10233390 MS.gene58753:intron
AGTGTTAGAATCAGAGCCTT+TGG 0.388291 8.1:-10231469 None:intergenic
TAAGCATCTTTCATGGGAAT+AGG 0.391292 8.1:-10231543 None:intergenic
AATGGAGAGTTCGGTGGCTT+TGG 0.393282 8.1:-10231248 None:intergenic
AATTCGGGGATATTGGGTTC+TGG 0.398791 8.1:+10231802 MS.gene58753:CDS
AGTGAGCGTCTGATAACAAT+TGG 0.404783 8.1:-10231420 None:intergenic
TGAGAAGGAAATATTTGATA+TGG 0.409089 8.1:+10232464 MS.gene58753:CDS
AATTGAGTGTTCACTTGAGT+TGG 0.413577 8.1:+10231671 MS.gene58753:CDS
TTGATGTCCAAATATAAATC+TGG 0.414105 8.1:-10233589 None:intergenic
CTGATGGAACTGCATGTACC+TGG 0.416707 8.1:+10232691 MS.gene58753:CDS
ATAAACACTCTTATGAGGTT+GGG 0.421173 8.1:+10233540 MS.gene58753:CDS
CAAATCGTATACTGTGAAAT+CGG 0.424791 8.1:+10231374 MS.gene58753:CDS
GGAAGGGCAAAACCGCATTT+GGG 0.429167 8.1:-10231748 None:intergenic
GAAAGTCGAAATCCATCTTC+CGG 0.433669 8.1:-10233133 None:intergenic
CACATCAGGCTCCTATTTCT+GGG 0.434666 8.1:+10231859 MS.gene58753:CDS
GATAAACACTCTTATGAGGT+TGG 0.438621 8.1:+10233539 MS.gene58753:CDS
TGCAGTTCCATCAGAGGAAC+TGG 0.438979 8.1:-10232682 None:intergenic
GAACTGGTAGCTACAATATG+AGG 0.439532 8.1:-10232666 None:intergenic
GGAATCTTTGAATTTGGATC+CGG 0.442264 8.1:+10231692 MS.gene58753:CDS
CCCTTCCAATGATGTTAAGA+TGG 0.443994 8.1:+10231764 MS.gene58753:CDS
TGCTACCATCTTAACATCAT+TGG 0.445194 8.1:-10231769 None:intergenic
AATATCGCACGTGTTGTTCC+TGG 0.445323 8.1:+10231717 MS.gene58753:CDS
ATTTGATAAACACTCTTATG+AGG 0.451517 8.1:+10233535 MS.gene58753:CDS
GGAATCTGGTGGAATACCTC+TGG 0.457148 8.1:-10231448 None:intergenic
TATATACAGTGGAGTTAACT+TGG 0.462698 8.1:+10233077 MS.gene58753:CDS
TACTTTCATGCAAATCCCAT+TGG 0.464977 8.1:-10232611 None:intergenic
GTGAGCGTCTGATAACAATT+GGG 0.470746 8.1:-10231419 None:intergenic
TGTAGCCTGGACAACACTAT+TGG 0.471622 8.1:+10233054 MS.gene58753:intron
TGAGGACATTTACTCACAAA+AGG 0.474639 8.1:+10232751 MS.gene58753:CDS
GATATTGGGTTCTGGAATGT+TGG 0.476414 8.1:+10231810 MS.gene58753:CDS
GGTCTGATTGTCATGATAAA+CGG 0.477120 8.1:-10233112 None:intergenic
ACTTTCATGCAAATCCCATT+GGG 0.482094 8.1:-10232610 None:intergenic
TTATAAAGGCGATGATGATT+CGG 0.486557 8.1:+10231563 MS.gene58753:CDS
TAGCAGAGCAATATGGGGTT+GGG 0.492077 8.1:+10233397 MS.gene58753:intron
GCTACAATATGAGGGCTTTG+CGG 0.494732 8.1:-10232657 None:intergenic
AAAAGAATACTTGGGACGAA+TGG 0.495955 8.1:-10231266 None:intergenic
CGTTGTCTCTACAGTTCAAA+GGG 0.496552 8.1:+10233463 MS.gene58753:CDS
TTCATTGGAAATATGAAAAG+AGG 0.497485 8.1:+10233434 MS.gene58753:CDS
GTCCTCAAGGCTGTGTGCTT+AGG 0.497924 8.1:-10232735 None:intergenic
CCTTTATAAGCATCTTTCAT+GGG 0.502905 8.1:-10231549 None:intergenic
TATGAGGTTGGGATGCTAGC+AGG 0.503200 8.1:+10233551 MS.gene58753:CDS
TCGATTGATGGATGCTGAGA+AGG 0.505059 8.1:+10232449 MS.gene58753:CDS
AACTGTTTATATTTCGCTGA+GGG 0.508414 8.1:+10232540 MS.gene58753:CDS
CTTGGGACGAATGGAGAGTT+CGG 0.508584 8.1:-10231257 None:intergenic
AGGAAAGTGTTCATCCCAAT+GGG 0.510778 8.1:+10232596 MS.gene58753:CDS
CGGCCATCATTTCATTGTTG+CGG 0.516632 8.1:-10231210 None:intergenic
AATGGGATTTGCATGAAAGT+AGG 0.520166 8.1:+10232613 MS.gene58753:CDS
ATGACAATCAGACCGGAAGA+TGG 0.524412 8.1:+10233121 MS.gene58753:CDS
CTGGGATTTGAGATCTATTG+GGG 0.525224 8.1:+10232710 MS.gene58753:CDS
ATATACCAATAGTGTTGTCC+AGG 0.531302 8.1:-10233059 None:intergenic
ATATACACAAGTTGTTATGA+TGG 0.537768 8.1:+10232420 MS.gene58753:CDS
TCTTTCATTGAATCACTCGT+TGG 0.538065 8.1:+10231591 MS.gene58753:CDS
TCGCCGCAACAATGAAATGA+TGG 0.543191 8.1:+10231207 MS.gene58753:CDS
GATGATGTTGTTCAAAATCT+GGG 0.544164 8.1:+10231519 MS.gene58753:CDS
GATGTTAAGATGGTAGCAGC+GGG 0.546408 8.1:+10231774 MS.gene58753:CDS
ACGTTGTCTCTACAGTTCAA+AGG 0.549032 8.1:+10233462 MS.gene58753:CDS
TAGGAAAGTGTTCATCCCAA+TGG 0.550904 8.1:+10232595 MS.gene58753:CDS
GTAGCTACCAGTTCCTCTGA+TGG 0.553538 8.1:+10232675 MS.gene58753:CDS
CCCAATAGATCTCAAATCCC+AGG 0.556839 8.1:-10232709 None:intergenic
GTAGCAGAGCAATATGGGGT+TGG 0.558769 8.1:+10233396 MS.gene58753:intron
ACCATCTTAACATCATTGGA+AGG 0.559963 8.1:-10231765 None:intergenic
GATGCAGCCTTGCCACTACA+AGG 0.562293 8.1:+10232805 MS.gene58753:CDS
CACAGTATACGATTTGGTAA+CGG 0.567926 8.1:-10231367 None:intergenic
ATATTTCGCTGAGGGTTCCG+GGG 0.573475 8.1:+10232548 MS.gene58753:CDS
TCAACCGCATTGCTTATCAA+AGG 0.576135 8.1:+10231890 MS.gene58753:CDS
TCTGTTTGGGATAACAGGAT+AGG 0.581370 8.1:+10232576 MS.gene58753:CDS
CCTCATACCTTGTAGTGGCA+AGG 0.594414 8.1:-10232812 None:intergenic
GTTTATCATGACAATCAGAC+CGG 0.602016 8.1:+10233114 MS.gene58753:CDS
TCGTACTCAGTGAGTTTCTG+AGG 0.602589 8.1:-10231163 None:intergenic
TCAGAGCCTTTGGAATCTGG+TGG 0.611319 8.1:-10231459 None:intergenic
CGAGTGATTCAATGAAAGAA+CGG 0.613172 8.1:-10231587 None:intergenic
GGTACATGCAGTTCCATCAG+AGG 0.614744 8.1:-10232688 None:intergenic
TCTCTCACATCCAAAGAATG+AGG 0.616628 8.1:+10232515 MS.gene58753:CDS
TGAGCGTCTGATAACAATTG+GGG 0.620630 8.1:-10231418 None:intergenic
GTGGCAAGGCTGCATCCAGA+AGG 0.621855 8.1:-10232798 None:intergenic
TATTTCGCTGAGGGTTCCGG+GGG 0.622011 8.1:+10232549 MS.gene58753:CDS
GGGATTTGAGATCTATTGGG+GGG 0.622594 8.1:+10232712 MS.gene58753:CDS
TGATGGAACTGCATGTACCT+GGG 0.625891 8.1:+10232692 MS.gene58753:CDS
GAGTGTTTATCAAATCTGCA+TGG 0.627999 8.1:-10233527 None:intergenic
AACACTATTGGTATATACAG+TGG 0.628310 8.1:+10233066 MS.gene58753:CDS
TGATGTTAAGATGGTAGCAG+CGG 0.630302 8.1:+10231773 MS.gene58753:CDS
TTTGTGAGTAAATGTCCTCA+AGG 0.630489 8.1:-10232748 None:intergenic
AACTGGTAGCTACAATATGA+GGG 0.630593 8.1:-10232665 None:intergenic
ATACAGTGGAGTTAACTTGG+AGG 0.630978 8.1:+10233080 MS.gene58753:CDS
CCATCTTAACATCATTGGAA+GGG 0.641113 8.1:-10231764 None:intergenic
TCGCACGTGTTGTTCCTGGA+AGG 0.643299 8.1:+10231721 MS.gene58753:CDS
CCAGAAATAGGAGCCTGATG+TGG 0.643342 8.1:-10231858 None:intergenic
GGCCTAAGCACACAGCCTTG+AGG 0.643539 8.1:+10232733 MS.gene58753:CDS
AAAGGCCTCATACCTTGTAG+TGG 0.644680 8.1:-10232817 None:intergenic
TAACTGTTTATATTTCGCTG+AGG 0.645770 8.1:+10232539 MS.gene58753:CDS
TGTGGTAGCAGAGCAATATG+GGG 0.651905 8.1:+10233392 MS.gene58753:intron
AGCAGCGGGGAACAAATTCG+GGG 0.651952 8.1:+10231788 MS.gene58753:CDS
GGGACGAATGGAGAGTTCGG+TGG 0.653277 8.1:-10231254 None:intergenic
ATGGAATTGCAGATATGTGT+TGG 0.653838 8.1:-10233508 None:intergenic
ATCCCAAACAGAGAGACCCC+CGG 0.661178 8.1:-10232565 None:intergenic
TGGGATTTGAGATCTATTGG+GGG 0.667120 8.1:+10232711 MS.gene58753:CDS
CTAGCAGGAGCTACAAGCGG+AGG 0.667634 8.1:+10233566 MS.gene58753:CDS
TTTGGTGTGAACTTTGAGAG+CGG 0.670301 8.1:-10231230 None:intergenic
GGTATTCCACCAGATTCCAA+AGG 0.670976 8.1:+10231453 MS.gene58753:CDS
ATGCTAGCAGGAGCTACAAG+CGG 0.673470 8.1:+10233563 MS.gene58753:CDS
CTGGAAGGATAACCCAAATG+CGG 0.678427 8.1:+10231736 MS.gene58753:CDS
AGACGCTCACTTCGAACCAG+AGG 0.684951 8.1:+10231432 MS.gene58753:CDS
ATATTTGATATGGTATACAA+CGG 0.688848 8.1:+10232474 MS.gene58753:CDS
CAAACCTTTGATAAGCAATG+CGG 0.698344 8.1:-10231894 None:intergenic
ACTCGTTGGTATGTCCAACA+AGG 0.708114 8.1:+10231605 MS.gene58753:CDS
ATGTTAAGATGGTAGCAGCG+GGG 0.764345 8.1:+10231775 MS.gene58753:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATCACAAAAAAAAAAAATT+TGG - chr8.1:10232964-10232983 None:intergenic 10.0%
!! TTTCTATAATAATTTAGAAA+AGG + chr8.1:10232109-10232128 MS.gene58753:intron 10.0%
!!! AATAAATTTCCTTTTTAATT+AGG - chr8.1:10233342-10233361 None:intergenic 10.0%
!!! ATTGTAACTCATTTTAAATA+TGG - chr8.1:10232869-10232888 None:intergenic 15.0%
!! AAAGAAGAAAAAAGAATACT+TGG - chr8.1:10231278-10231297 None:intergenic 20.0%
!! AAATATCAATATCAATGTTG+AGG + chr8.1:10233251-10233270 MS.gene58753:intron 20.0%
!! AAGAAGAAAAAAGAATACTT+GGG - chr8.1:10231277-10231296 None:intergenic 20.0%
!! AATATCAATATCAATGTTGA+GGG + chr8.1:10233252-10233271 MS.gene58753:intron 20.0%
!! ATATTTGATATGGTATACAA+CGG + chr8.1:10232474-10232493 MS.gene58753:CDS 20.0%
!! ATTCATAATTATAATGAGCT+TGG + chr8.1:10232981-10233000 MS.gene58753:intron 20.0%
!! TACTTACAAAAAATACGTAA+GGG - chr8.1:10232360-10232379 None:intergenic 20.0%
!! TGGTATTAAAAATGAAACAA+AGG - chr8.1:10232838-10232857 None:intergenic 20.0%
!! TTTAATTGTTGTGAATTTGA+TGG + chr8.1:10233008-10233027 MS.gene58753:intron 20.0%
!!! AATTTTCAGAAGAACTTAAT+GGG + chr8.1:10231628-10231647 MS.gene58753:CDS 20.0%
!!! TTCATTTTTTTGAATTCACA+GGG + chr8.1:10231344-10231363 MS.gene58753:intron 20.0%
!!! TTTCATTTTTTTGAATTCAC+AGG + chr8.1:10231343-10231362 MS.gene58753:intron 20.0%
! ATATACACAAGTTGTTATGA+TGG + chr8.1:10232420-10232439 MS.gene58753:CDS 25.0%
! ATCAAATAACAATAAGTACC+AGG - chr8.1:10232914-10232933 None:intergenic 25.0%
! ATTTGATAAACACTCTTATG+AGG + chr8.1:10233535-10233554 MS.gene58753:CDS 25.0%
! CTACTTACAAAAAATACGTA+AGG - chr8.1:10232361-10232380 None:intergenic 25.0%
! TGAGAAGGAAATATTTGATA+TGG + chr8.1:10232464-10232483 MS.gene58753:CDS 25.0%
! TTCACTCTTCCTAATTAAAA+AGG + chr8.1:10233330-10233349 MS.gene58753:intron 25.0%
! TTCATTGGAAATATGAAAAG+AGG + chr8.1:10233434-10233453 MS.gene58753:CDS 25.0%
! TTGATGTCCAAATATAAATC+TGG - chr8.1:10233592-10233611 None:intergenic 25.0%
!! GAATTTTCAGAAGAACTTAA+TGG + chr8.1:10231627-10231646 MS.gene58753:CDS 25.0%
!! TTTTAAATATGGAGAGATAG+TGG - chr8.1:10232858-10232877 None:intergenic 25.0%
!! TTTTCATATTTCCAATGAAG+AGG - chr8.1:10233433-10233452 None:intergenic 25.0%
!!! AACATCATCAATTTTTTGAG+GGG - chr8.1:10231508-10231527 None:intergenic 25.0%
!!! ACAACATCATCAATTTTTTG+AGG - chr8.1:10231510-10231529 None:intergenic 25.0%
!!! ATTGATATTTTTTGCGAAGT+GGG - chr8.1:10233241-10233260 None:intergenic 25.0%
!!! CAACATCATCAATTTTTTGA+GGG - chr8.1:10231509-10231528 None:intergenic 25.0%
!!! TATTGATATTTTTTGCGAAG+TGG - chr8.1:10233242-10233261 None:intergenic 25.0%
AACACTATTGGTATATACAG+TGG + chr8.1:10233066-10233085 MS.gene58753:CDS 30.0%
AACTGTTTATATTTCGCTGA+GGG + chr8.1:10232540-10232559 MS.gene58753:CDS 30.0%
ATAAACACTCTTATGAGGTT+GGG + chr8.1:10233540-10233559 MS.gene58753:CDS 30.0%
CAAATCGTATACTGTGAAAT+CGG + chr8.1:10231374-10231393 MS.gene58753:CDS 30.0%
CCTTTATAAGCATCTTTCAT+GGG - chr8.1:10231552-10231571 None:intergenic 30.0%
GATGATGTTGTTCAAAATCT+GGG + chr8.1:10231519-10231538 MS.gene58753:CDS 30.0%
TAACTAACTGCTTCAGAAAT+CGG - chr8.1:10231933-10231952 None:intergenic 30.0%
TAACTGTTTATATTTCGCTG+AGG + chr8.1:10232539-10232558 MS.gene58753:CDS 30.0%
TATATACAGTGGAGTTAACT+TGG + chr8.1:10233077-10233096 MS.gene58753:CDS 30.0%
TCTAGTTGACATTGTTATCT+TGG + chr8.1:10233366-10233385 MS.gene58753:intron 30.0%
TTATAAAGGCGATGATGATT+CGG + chr8.1:10231563-10231582 MS.gene58753:CDS 30.0%
! TATGTTTGGATGAAGGTTTT+TGG - chr8.1:10232146-10232165 None:intergenic 30.0%
! TGAGTTGGAATCTTTGAATT+TGG + chr8.1:10231686-10231705 MS.gene58753:CDS 30.0%
! TGATGATGTTGTTCAAAATC+TGG + chr8.1:10231518-10231537 MS.gene58753:CDS 30.0%
! TTCTTCTGAAAATTCCTTGT+TGG - chr8.1:10231622-10231641 None:intergenic 30.0%
!!! ACATTGTTATCTTGGTTTTG+TGG + chr8.1:10233374-10233393 MS.gene58753:intron 30.0%
!!! TTTTTTGTATCATCCACATC+AGG + chr8.1:10231845-10231864 MS.gene58753:CDS 30.0%
AAAAGAATACTTGGGACGAA+TGG - chr8.1:10231269-10231288 None:intergenic 35.0%
AACTGGTAGCTACAATATGA+GGG - chr8.1:10232668-10232687 None:intergenic 35.0%
AATGGGATTTGCATGAAAGT+AGG + chr8.1:10232613-10232632 MS.gene58753:CDS 35.0%
AATTGAGTGTTCACTTGAGT+TGG + chr8.1:10231671-10231690 MS.gene58753:CDS 35.0%
ACCATCTTAACATCATTGGA+AGG - chr8.1:10231768-10231787 None:intergenic 35.0%
ACTCTAAACTGTCTGATGTT+TGG + chr8.1:10233280-10233299 MS.gene58753:intron 35.0%
ACTTTCATGCAAATCCCATT+GGG - chr8.1:10232613-10232632 None:intergenic 35.0%
ATATACCAATAGTGTTGTCC+AGG - chr8.1:10233062-10233081 None:intergenic 35.0%
ATGGAATTGCAGATATGTGT+TGG - chr8.1:10233511-10233530 None:intergenic 35.0%
CAAACCTTTGATAAGCAATG+CGG - chr8.1:10231897-10231916 None:intergenic 35.0%
CCATCTTAACATCATTGGAA+GGG - chr8.1:10231767-10231786 None:intergenic 35.0%
CCCATGAAAGATGCTTATAA+AGG + chr8.1:10231549-10231568 MS.gene58753:CDS 35.0%
CGAGTGATTCAATGAAAGAA+CGG - chr8.1:10231590-10231609 None:intergenic 35.0%
CGATTTCACAGTATACGATT+TGG - chr8.1:10231376-10231395 None:intergenic 35.0%
GAGTGTTTATCAAATCTGCA+TGG - chr8.1:10233530-10233549 None:intergenic 35.0%
GATAAACACTCTTATGAGGT+TGG + chr8.1:10233539-10233558 MS.gene58753:CDS 35.0%
GCCTTTATAAGCATCTTTCA+TGG - chr8.1:10231553-10231572 None:intergenic 35.0%
GGAATCTTTGAATTTGGATC+CGG + chr8.1:10231692-10231711 MS.gene58753:CDS 35.0%
GGTCTGATTGTCATGATAAA+CGG - chr8.1:10233115-10233134 None:intergenic 35.0%
GTTTATCATGACAATCAGAC+CGG + chr8.1:10233114-10233133 MS.gene58753:CDS 35.0%
TAAGCATCTTTCATGGGAAT+AGG - chr8.1:10231546-10231565 None:intergenic 35.0%
TACTTTCATGCAAATCCCAT+TGG - chr8.1:10232614-10232633 None:intergenic 35.0%
TCTTTCATTGAATCACTCGT+TGG + chr8.1:10231591-10231610 MS.gene58753:CDS 35.0%
TGAAACAAGATCCCAGAAAT+AGG - chr8.1:10231873-10231892 None:intergenic 35.0%
TGAGGACATTTACTCACAAA+AGG + chr8.1:10232751-10232770 MS.gene58753:CDS 35.0%
TGCTACCATCTTAACATCAT+TGG - chr8.1:10231772-10231791 None:intergenic 35.0%
TTTGTGAGTAAATGTCCTCA+AGG - chr8.1:10232751-10232770 None:intergenic 35.0%
! AAAATACGTAAGGGTGTGTT+TGG - chr8.1:10232351-10232370 None:intergenic 35.0%
! AAACAGTTAGCCTCATTCTT+TGG - chr8.1:10232528-10232547 None:intergenic 35.0%
! AACAATTGGGGTTTCAGTTT+TGG - chr8.1:10231409-10231428 None:intergenic 35.0%
! ACAATTGGGGTTTCAGTTTT+GGG - chr8.1:10231408-10231427 None:intergenic 35.0%
! TCAAAACGTAAGGGTATGTT+TGG - chr8.1:10232160-10232179 None:intergenic 35.0%
! TGTGTTTGGATGAAGGTTTT+TGG - chr8.1:10232337-10232356 None:intergenic 35.0%
!! CACAGTATACGATTTGGTAA+CGG - chr8.1:10231370-10231389 None:intergenic 35.0%
!! TGATGGACTTATTCGATTGA+TGG + chr8.1:10232437-10232456 MS.gene58753:CDS 35.0%
ACGTTGTCTCTACAGTTCAA+AGG + chr8.1:10233462-10233481 MS.gene58753:CDS 40.0%
ACTCAGTGCTTCAAAACGTA+AGG - chr8.1:10232170-10232189 None:intergenic 40.0%
AGTGAGCGTCTGATAACAAT+TGG - chr8.1:10231423-10231442 None:intergenic 40.0%
AGTGTTAGAATCAGAGCCTT+TGG - chr8.1:10231472-10231491 None:intergenic 40.0%
CCCTTCCAATGATGTTAAGA+TGG + chr8.1:10231764-10231783 MS.gene58753:CDS 40.0%
CGTTGTCTCTACAGTTCAAA+GGG + chr8.1:10233463-10233482 MS.gene58753:CDS 40.0%
CTCAGTGCTTCAAAACGTAA+GGG - chr8.1:10232169-10232188 None:intergenic 40.0%
GAAAGTCGAAATCCATCTTC+CGG - chr8.1:10233136-10233155 None:intergenic 40.0%
GAACTGGTAGCTACAATATG+AGG - chr8.1:10232669-10232688 None:intergenic 40.0%
GAAGCAGTTAGTTATCTTCG+TGG + chr8.1:10231939-10231958 MS.gene58753:intron 40.0%
GACAGTTCATACCTCTTCAT+TGG + chr8.1:10233419-10233438 MS.gene58753:CDS 40.0%
GCATCCAGAAGGAGAAAAAT+AGG - chr8.1:10232790-10232809 None:intergenic 40.0%
GGAACAAATTCGGGGATATT+GGG + chr8.1:10231796-10231815 MS.gene58753:CDS 40.0%
GTGAGCGTCTGATAACAATT+GGG - chr8.1:10231422-10231441 None:intergenic 40.0%
TCAACCGCATTGCTTATCAA+AGG + chr8.1:10231890-10231909 MS.gene58753:CDS 40.0%
TCGTGGATAGTATGTTTGCA+TGG + chr8.1:10231956-10231975 MS.gene58753:intron 40.0%
TCTCTCACATCCAAAGAATG+AGG + chr8.1:10232515-10232534 MS.gene58753:CDS 40.0%
TGAGCGTCTGATAACAATTG+GGG - chr8.1:10231421-10231440 None:intergenic 40.0%
TGATGTTAAGATGGTAGCAG+CGG + chr8.1:10231773-10231792 MS.gene58753:CDS 40.0%
TGTGAATATGCTTACTCGTG+TGG + chr8.1:10232888-10232907 MS.gene58753:intron 40.0%
TGTTATCTCTTGATGTAGCC+TGG + chr8.1:10233041-10233060 MS.gene58753:intron 40.0%
TTATATTTCGCTGAGGGTTC+CGG + chr8.1:10232546-10232565 MS.gene58753:CDS 40.0%
TTGTGGTAGCAGAGCAATAT+GGG + chr8.1:10233391-10233410 MS.gene58753:intron 40.0%
TTTGTGGTAGCAGAGCAATA+TGG + chr8.1:10233390-10233409 MS.gene58753:intron 40.0%
! ACAACACGTGCGATATTTTC+CGG - chr8.1:10231714-10231733 None:intergenic 40.0%
! ACCTGGGATTTGAGATCTAT+TGG + chr8.1:10232708-10232727 MS.gene58753:CDS 40.0%
! ATACAGTGGAGTTAACTTGG+AGG + chr8.1:10233080-10233099 MS.gene58753:CDS 40.0%
! CCTGGGATTTGAGATCTATT+GGG + chr8.1:10232709-10232728 MS.gene58753:CDS 40.0%
! CTGGGATTTGAGATCTATTG+GGG + chr8.1:10232710-10232729 MS.gene58753:CDS 40.0%
! GAAGATGGATTTCGACTTTC+AGG + chr8.1:10233136-10233155 MS.gene58753:CDS 40.0%
! GTAAGGGTATGTTTGGATGA+AGG - chr8.1:10232153-10232172 None:intergenic 40.0%
! TCTGTTTGGGATAACAGGAT+AGG + chr8.1:10232576-10232595 MS.gene58753:CDS 40.0%
! TGGGATTTGAGATCTATTGG+GGG + chr8.1:10232711-10232730 MS.gene58753:CDS 40.0%
! TTTGGTGTGAACTTTGAGAG+CGG - chr8.1:10231233-10231252 None:intergenic 40.0%
!! AGGAAAGTGTTCATCCCAAT+GGG + chr8.1:10232596-10232615 MS.gene58753:CDS 40.0%
!! GATATTGGGTTCTGGAATGT+TGG + chr8.1:10231810-10231829 MS.gene58753:CDS 40.0%
!! TAGGAAAGTGTTCATCCCAA+TGG + chr8.1:10232595-10232614 MS.gene58753:CDS 40.0%
!! TCAGCCTATTTTTCTCCTTC+TGG + chr8.1:10232783-10232802 MS.gene58753:CDS 40.0%
AAAGGCCTCATACCTTGTAG+TGG - chr8.1:10232820-10232839 None:intergenic 45.0%
AAGTGGGACAAGTCAGCAAA+TGG - chr8.1:10233225-10233244 None:intergenic 45.0%
AATTCGGGGATATTGGGTTC+TGG + chr8.1:10231802-10231821 MS.gene58753:CDS 45.0%
ACTCGTTGGTATGTCCAACA+AGG + chr8.1:10231605-10231624 MS.gene58753:CDS 45.0%
ATGACAATCAGACCGGAAGA+TGG + chr8.1:10233121-10233140 MS.gene58753:CDS 45.0%
ATGTTAAGATGGTAGCAGCG+GGG + chr8.1:10231775-10231794 MS.gene58753:CDS 45.0%
CCCAATAGATCTCAAATCCC+AGG - chr8.1:10232712-10232731 None:intergenic 45.0%
CGGCCATCATTTCATTGTTG+CGG - chr8.1:10231213-10231232 None:intergenic 45.0%
CTACAATATGAGGGCTTTGC+GGG - chr8.1:10232659-10232678 None:intergenic 45.0%
CTGGAAGGATAACCCAAATG+CGG + chr8.1:10231736-10231755 MS.gene58753:CDS 45.0%
GATGTTAAGATGGTAGCAGC+GGG + chr8.1:10231774-10231793 MS.gene58753:CDS 45.0%
GCGGAGGCCAGATTTATATT+TGG + chr8.1:10233582-10233601 MS.gene58753:CDS 45.0%
GCTACAATATGAGGGCTTTG+CGG - chr8.1:10232660-10232679 None:intergenic 45.0%
GGGAACAAATTCGGGGATAT+TGG + chr8.1:10231795-10231814 MS.gene58753:CDS 45.0%
GGTATTCCACCAGATTCCAA+AGG + chr8.1:10231453-10231472 MS.gene58753:CDS 45.0%
GTCAGCAAATGGCAAAAGAG+AGG - chr8.1:10233214-10233233 None:intergenic 45.0%
TAGCAGAGCAATATGGGGTT+GGG + chr8.1:10233397-10233416 MS.gene58753:intron 45.0%
TATATTTCGCTGAGGGTTCC+GGG + chr8.1:10232547-10232566 MS.gene58753:CDS 45.0%
TCGCCGCAACAATGAAATGA+TGG + chr8.1:10231207-10231226 MS.gene58753:CDS 45.0%
TCGTACTCAGTGAGTTTCTG+AGG - chr8.1:10231166-10231185 None:intergenic 45.0%
TGATGGAACTGCATGTACCT+GGG + chr8.1:10232692-10232711 MS.gene58753:CDS 45.0%
TGTAGCCTGGACAACACTAT+TGG + chr8.1:10233054-10233073 MS.gene58753:intron 45.0%
TGTGGTAGCAGAGCAATATG+GGG + chr8.1:10233392-10233411 MS.gene58753:intron 45.0%
! AATATCGCACGTGTTGTTCC+TGG + chr8.1:10231717-10231736 MS.gene58753:CDS 45.0%
! CACATCAGGCTCCTATTTCT+GGG + chr8.1:10231859-10231878 MS.gene58753:CDS 45.0%
! GGGATTTGAGATCTATTGGG+GGG + chr8.1:10232712-10232731 MS.gene58753:CDS 45.0%
! GTAAGGGTGTGTTTGGATGA+AGG - chr8.1:10232344-10232363 None:intergenic 45.0%
! GTCTCTCTGTTTGGGATAAC+AGG + chr8.1:10232571-10232590 MS.gene58753:CDS 45.0%
! TCGATTGATGGATGCTGAGA+AGG + chr8.1:10232449-10232468 MS.gene58753:CDS 45.0%
! TGGATTTCGACTTTCAGGTG+CGG + chr8.1:10233141-10233160 MS.gene58753:intron 45.0%
!! GAATCAGAGCCTTTGGAATC+TGG - chr8.1:10231465-10231484 None:intergenic 45.0%
ATATGCTTACTCGTGTGGCC+TGG + chr8.1:10232893-10232912 MS.gene58753:intron 50.0%
ATATTTCGCTGAGGGTTCCG+GGG + chr8.1:10232548-10232567 MS.gene58753:CDS 50.0%
ATGCTAGCAGGAGCTACAAG+CGG + chr8.1:10233563-10233582 MS.gene58753:CDS 50.0%
CCACATCAGGCTCCTATTTC+TGG + chr8.1:10231858-10231877 MS.gene58753:CDS 50.0%
CCAGAAATAGGAGCCTGATG+TGG - chr8.1:10231861-10231880 None:intergenic 50.0%
CCTCATACCTTGTAGTGGCA+AGG - chr8.1:10232815-10232834 None:intergenic 50.0%
CCTTGCCACTACAAGGTATG+AGG + chr8.1:10232812-10232831 MS.gene58753:intron 50.0%
CTGATGGAACTGCATGTACC+TGG + chr8.1:10232691-10232710 MS.gene58753:CDS 50.0%
CTTGGGACGAATGGAGAGTT+CGG - chr8.1:10231260-10231279 None:intergenic 50.0%
GGAAGGGCAAAACCGCATTT+GGG - chr8.1:10231751-10231770 None:intergenic 50.0%
GGAATCTGGTGGAATACCTC+TGG - chr8.1:10231451-10231470 None:intergenic 50.0%
GGTACATGCAGTTCCATCAG+AGG - chr8.1:10232691-10232710 None:intergenic 50.0%
GTAGCAGAGCAATATGGGGT+TGG + chr8.1:10233396-10233415 MS.gene58753:intron 50.0%
GTAGCAGCGGGGAACAAATT+CGG + chr8.1:10231786-10231805 MS.gene58753:CDS 50.0%
GTAGCTACCAGTTCCTCTGA+TGG + chr8.1:10232675-10232694 MS.gene58753:CDS 50.0%
TAGCAGCGGGGAACAAATTC+GGG + chr8.1:10231787-10231806 MS.gene58753:CDS 50.0%
TATGAGGTTGGGATGCTAGC+AGG + chr8.1:10233551-10233570 MS.gene58753:CDS 50.0%
TGCAGTTCCATCAGAGGAAC+TGG - chr8.1:10232685-10232704 None:intergenic 50.0%
TGGAAGGGCAAAACCGCATT+TGG - chr8.1:10231752-10231771 None:intergenic 50.0%
! AATGGAGAGTTCGGTGGCTT+TGG - chr8.1:10231251-10231270 None:intergenic 50.0%
! ACTTTCAGGTGCGGTTTCTG+GGG + chr8.1:10233150-10233169 MS.gene58753:intron 50.0%
! CGCATTTGGGTTATCCTTCC+AGG - chr8.1:10231738-10231757 None:intergenic 50.0%
! GACTTTCAGGTGCGGTTTCT+GGG + chr8.1:10233149-10233168 MS.gene58753:intron 50.0%
!! TCAGAGCCTTTGGAATCTGG+TGG - chr8.1:10231462-10231481 None:intergenic 50.0%
AGACGCTCACTTCGAACCAG+AGG + chr8.1:10231432-10231451 MS.gene58753:CDS 55.0%
AGCAGCGGGGAACAAATTCG+GGG + chr8.1:10231788-10231807 MS.gene58753:CDS 55.0%
ATCCCAAACAGAGAGACCCC+CGG - chr8.1:10232568-10232587 None:intergenic 55.0%
GATGCAGCCTTGCCACTACA+AGG + chr8.1:10232805-10232824 MS.gene58753:CDS 55.0%
GTCCTCAAGGCTGTGTGCTT+AGG - chr8.1:10232738-10232757 None:intergenic 55.0%
TATTTCGCTGAGGGTTCCGG+GGG + chr8.1:10232549-10232568 MS.gene58753:CDS 55.0%
TTCCGGGGGTCTCTCTGTTT+GGG + chr8.1:10232563-10232582 MS.gene58753:CDS 55.0%
! CGACTTTCAGGTGCGGTTTC+TGG + chr8.1:10233148-10233167 MS.gene58753:intron 55.0%
! TCGCACGTGTTGTTCCTGGA+AGG + chr8.1:10231721-10231740 MS.gene58753:CDS 55.0%
CTAGCAGGAGCTACAAGCGG+AGG + chr8.1:10233566-10233585 MS.gene58753:CDS 60.0%
GGCCTAAGCACACAGCCTTG+AGG + chr8.1:10232733-10232752 MS.gene58753:CDS 60.0%
GGGACGAATGGAGAGTTCGG+TGG - chr8.1:10231257-10231276 None:intergenic 60.0%
GTGGCAAGGCTGCATCCAGA+AGG - chr8.1:10232801-10232820 None:intergenic 60.0%
GTTCCGGGGGTCTCTCTGTT+TGG + chr8.1:10232562-10232581 MS.gene58753:CDS 60.0%


Chromosome Type Strat End Strand Name
chr8.1 gene 10231157 10233616 10231157 ID=MS.gene58753
chr8.1 mRNA 10231157 10233616 10231157 ID=MS.gene58753.t1;Parent=MS.gene58753
chr8.1 exon 10231157 10231278 10231157 ID=MS.gene58753.t1.exon1;Parent=MS.gene58753.t1
chr8.1 CDS 10231157 10231278 10231157 ID=cds.MS.gene58753.t1;Parent=MS.gene58753.t1
chr8.1 exon 10231365 10231911 10231365 ID=MS.gene58753.t1.exon2;Parent=MS.gene58753.t1
chr8.1 CDS 10231365 10231911 10231365 ID=cds.MS.gene58753.t1;Parent=MS.gene58753.t1
chr8.1 exon 10232420 10232826 10232420 ID=MS.gene58753.t1.exon3;Parent=MS.gene58753.t1
chr8.1 CDS 10232420 10232826 10232420 ID=cds.MS.gene58753.t1;Parent=MS.gene58753.t1
chr8.1 exon 10233059 10233157 10233059 ID=MS.gene58753.t1.exon4;Parent=MS.gene58753.t1
chr8.1 CDS 10233059 10233157 10233059 ID=cds.MS.gene58753.t1;Parent=MS.gene58753.t1
chr8.1 exon 10233403 10233616 10233403 ID=MS.gene58753.t1.exon5;Parent=MS.gene58753.t1
chr8.1 CDS 10233403 10233616 10233403 ID=cds.MS.gene58753.t1;Parent=MS.gene58753.t1
Gene Sequence

>MS.gene58753

ATGGCGCCTCAGAAACTCACTGAGTACGAACGCAAACGACTCGAAAACATTCGCCGCAACAATGAAATGATGGCCGCTCTCAAAGTTCACACCAAAGCCACCGAACTCTCCATTCGTCCCAAGTATTCTTTTTTCTTCTTTTTCACTATCAAATCATTCATCATTTTCTATGTATTCAACTTCAATTTTCATTTTTTTGAATTCACAGGGCCGTTACCAAATCGTATACTGTGAAATCGGAGAAAAAACCCAAAACTGAAACCCCAATTGTTATCAGACGCTCACTTCGAACCAGAGGTATTCCACCAGATTCCAAAGGCTCTGATTCTAACACTCTCACTCACAATTCCCCTCAAAAAATTGATGATGTTGTTCAAAATCTGGGTCCTATTCCCATGAAAGATGCTTATAAAGGCGATGATGATTCGGACCGTTCTTTCATTGAATCACTCGTTGGTATGTCCAACAAGGAATTTTCAGAAGAACTTAATGGGTCTGCAAAAAAGAAGAAGAAAATTGAGTGTTCACTTGAGTTGGAATCTTTGAATTTGGATCCGGAAAATATCGCACGTGTTGTTCCTGGAAGGATAACCCAAATGCGGTTTTGCCCTTCCAATGATGTTAAGATGGTAGCAGCGGGGAACAAATTCGGGGATATTGGGTTCTGGAATGTTGGAGAAAGTGAGATTTTTTTGTATCATCCACATCAGGCTCCTATTTCTGGGATCTTGTTTCAACCGCATTGCTTATCAAAGGTTTGTGAATTCTTAATTCCGATTTCTGAAGCAGTTAGTTATCTTCGTGGATAGTATGTTTGCATGGAGTGTTTTGAAGCACTGAGTCTATATTTTGATATATGTTTGATTTTGTCTAGAAATTTGAATGAATAATATGATAGATGATTATATAACATTTCAATCACAGTGATTTCATTTTTATTAACAATTTATAGTTTCTATAATAATTTAGAAAAGGAACATTTTTCTCCAAAAACCTTCATCCAAACATACCCTTACGTTTTGAAGCACTGAGTCTATATTTTGATATATGTTTGATTTTGTCTATAAATTTGAATGAATAATATGATAGATGATTATATAACATTTCAATCACAGTGATTTCATTTTTATTAACAATTTATAGTTTCTATAATAATTTAGAAAAGGAACATTTTTCTCCAAAAACCTTCATCCAAACACACCCTTACGTATTTTTTGTAAGTAGCAGAATTGTCTGATACTGTGATCATTGATTTGTATGCAGATATACACAAGTTGTTATGATGGACTTATTCGATTGATGGATGCTGAGAAGGAAATATTTGATATGGTATACAACGGTGAAAACAGTATATATGCTCTCTCACATCCAAAGAATGAGGCTAACTGTTTATATTTCGCTGAGGGTTCCGGGGGTCTCTCTGTTTGGGATAACAGGATAGGAAAGTGTTCATCCCAATGGGATTTGCATGAAAGTAGGATTAATACAATAGATTTCAACCCGCAAAGCCCTCATATTGTAGCTACCAGTTCCTCTGATGGAACTGCATGTACCTGGGATTTGAGATCTATTGGGGGGCCTAAGCACACAGCCTTGAGGACATTTACTCACAAAAGGTCTGTGCAATCAGCCTATTTTTCTCCTTCTGGATGCAGCCTTGCCACTACAAGGTATGAGGCCTTTGTTTCATTTTTAATACCACTATCTCTCCATATTTAAAATGAGTTACAATGTGAATATGCTTACTCGTGTGGCCTGGTACTTATTGTTATTTGATAACTGTAGTTAGCGTGTTAACTAGATTCCAAATTTTTTTTTTTTGTGATTCATAATTATAATGAGCTTGGTATTTTTAATTGTTGTGAATTTGATGGATTGAATTGATGTTATCTCTTGATGTAGCCTGGACAACACTATTGGTATATACAGTGGAGTTAACTTGGAGGATAAAACTTCCGTTTATCATGACAATCAGACCGGAAGATGGATTTCGACTTTCAGGTGCGGTTTCTGGGGAAGTATTGAATGTTTAAGTTGTTATAGTATTAGTTATGCCTCTCTTTTGCCATTTGCTGACTTGTCCCACTTCGCAAAAAATATCAATATCAATGTTGAGGGACTTAACTCTAAACTGTCTGATGTTTGGAGATAATTTTTACATTTCAATTAATAGTTCACTCTTCCTAATTAAAAAGGAAATTTATTTGATTCTAGTTGACATTGTTATCTTGGTTTTGTGGTAGCAGAGCAATATGGGGTTGGGACAGTTCATACCTCTTCATTGGAAATATGAAAAGAGGAGTTGACGTTGTCTCTACAGTTCAAAGGGCAACAGTAAAGACTCTACAGAGCCAACACATATCTGCAATTCCATGCAGATTTGATAAACACTCTTATGAGGTTGGGATGCTAGCAGGAGCTACAAGCGGAGGCCAGATTTATATTTGGACATCAAGCTAA

Protein sequence

>MS.gene58753.t1

MAPQKLTEYERKRLENIRRNNEMMAALKVHTKATELSIRPKAVTKSYTVKSEKKPKTETPIVIRRSLRTRGIPPDSKGSDSNTLTHNSPQKIDDVVQNLGPIPMKDAYKGDDDSDRSFIESLVGMSNKEFSEELNGSAKKKKKIECSLELESLNLDPENIARVVPGRITQMRFCPSNDVKMVAAGNKFGDIGFWNVGESEIFLYHPHQAPISGILFQPHCLSKIYTSCYDGLIRLMDAEKEIFDMVYNGENSIYALSHPKNEANCLYFAEGSGGLSVWDNRIGKCSSQWDLHESRINTIDFNPQSPHIVATSSSDGTACTWDLRSIGGPKHTALRTFTHKRSVQSAYFSPSGCSLATTSLDNTIGIYSGVNLEDKTSVYHDNQTGRWISTFRAIWGWDSSYLFIGNMKRGVDVVSTVQRATVKTLQSQHISAIPCRFDKHSYEVGMLAGATSGGQIYIWTSS