AlfalfaGEDB | MS.gene60598

M. sativa cultivar XinJiangDaYe / MS.gene60598

KEGG: -
GO: -
PFAM: -

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene60598.t1	XP_024642361.1	97.1	272	8	0	1	272	1	272	3.50E-145	524.2

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene60598.t1	A0A396JW40	97.1	272	8	0	1	272	1	272	2.5e-145	524.2

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049397	MS.gene60598	0.807482	4.95E-50	-1.69E-46
MS.gene049596	MS.gene60598	0.829047	6.40E-55	-1.69E-46
MS.gene049989	MS.gene60598	0.814051	1.88E-51	-1.69E-46
MS.gene050297	MS.gene60598	0.894051	3.55E-75	-1.69E-46
MS.gene051478	MS.gene60598	0.809048	2.29E-50	-1.69E-46
MS.gene052367	MS.gene60598	0.808702	2.72E-50	-1.69E-46
MS.gene054643	MS.gene60598	0.829917	3.94E-55	-1.69E-46
MS.gene055764	MS.gene60598	0.806792	6.92E-50	-1.69E-46
MS.gene057483	MS.gene60598	0.818439	1.96E-52	-1.69E-46
MS.gene05870	MS.gene60598	0.803006	4.28E-49	-1.69E-46

Showing 1 to 10 of 14 entries

Previous1 2Next

PPI:

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Find 50 sgRNAs with CRISPR-Local

Find 76 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCACAAAGTCATGCAT+TGG	0.496042	1.2:+69476861	MS.gene60598:CDS
AACAATAGTGGGGTTGTTCT+TGG	0.286826	1.2:-69476590	None:intergenic
AAGACTGCTATACTTGGGGA+TGG	0.598286	1.2:+69476901	MS.gene60598:CDS
AAGATGAAATCTAGGGCTGG+AGG	0.656807	1.2:+69476445	MS.gene60598:CDS
AAGCCTATTGATATAGTAGA+TGG	0.426272	1.2:+69476502	MS.gene60598:CDS
AAGGAAGTTGTTTCTGCCAA+GGG	0.563895	1.2:+69476625	MS.gene60598:CDS
AATGTCATTGATCATGTTAA+TGG	0.315572	1.2:+69476294	MS.gene60598:CDS
ACCTTCAGTTTGCTAAAAGC+AGG	0.486566	1.2:-69477049	None:intergenic
AGAAGTCAAATACTGGCAGC+AGG	0.552216	1.2:+69476692	MS.gene60598:CDS
ATCAATAGGCTTCACTGCAT+TGG	0.447906	1.2:-69476491	None:intergenic

Showing 1 to 10 of 50 entries

Previous1 2 3 4 5Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAAATCACAAAGTCATGCAT+TGG	+	chr1.2:69476861-69476880	MS.gene60598:CDS	30.0%
AAGCCTATTGATATAGTAGA+TGG	+	chr1.2:69476502-69476521	MS.gene60598:CDS	30.0%
ATCCTTATGTAGAACAATAG+TGG	-	chr1.2:69476605-69476624	None:intergenic	30.0%
CTACACACATAAACAATTGA+TGG	-	chr1.2:69476355-69476374	None:intergenic	30.0%
CTTGAAATCAACAAAAGAAC+TGG	+	chr1.2:69476655-69476674	MS.gene60598:CDS	30.0%
TCCTTATGTAGAACAATAGT+GGG	-	chr1.2:69476604-69476623	None:intergenic	30.0%
TGATATAGTAGATGGAAAGA+AGG	+	chr1.2:69476510-69476529	MS.gene60598:CDS	30.0%
TTTAATTGTGCTACCATTGA+AGG	-	chr1.2:69476536-69476555	None:intergenic	30.0%
ATTATGAAACATCCGCTCTT+CGG	-	chr1.2:69476827-69476846	None:intergenic	35.0%
CCTTATGTAGAACAATAGTG+GGG	-	chr1.2:69476603-69476622	None:intergenic	35.0%

Showing 1 to 10 of 76 entries

Previous1 2 3 4 5…8Next

Chromosome	Type	Strat	End	Strand	Name
chr1.2	gene	69476258	69477350	69476258	ID=MS.gene60598
chr1.2	mRNA	69476258	69477350	69476258	ID=MS.gene60598.t1;Parent=MS.gene60598
chr1.2	exon	69476258	69476315	69476258	ID=MS.gene60598.t1.exon1;Parent=MS.gene60598.t1
chr1.2	CDS	69476258	69476315	69476258	ID=cds.MS.gene60598.t1;Parent=MS.gene60598.t1
chr1.2	exon	69476407	69476922	69476407	ID=MS.gene60598.t1.exon2;Parent=MS.gene60598.t1
chr1.2	CDS	69476407	69476922	69476407	ID=cds.MS.gene60598.t1;Parent=MS.gene60598.t1
chr1.2	exon	69477014	69477069	69477014	ID=MS.gene60598.t1.exon3;Parent=MS.gene60598.t1
chr1.2	CDS	69477014	69477069	69477014	ID=cds.MS.gene60598.t1;Parent=MS.gene60598.t1
chr1.2	exon	69477162	69477350	69477162	ID=MS.gene60598.t1.exon4;Parent=MS.gene60598.t1
chr1.2	CDS	69477162	69477350	69477162	ID=cds.MS.gene60598.t1;Parent=MS.gene60598.t1

Gene Sequence

>MS.gene60598

ATGGCTGCACGAACTGTTCGTTTGTTTCAAGACCAAAATGTCATTGATCATGTTAATGGTATTTTTCTGGTTCATTAAGTTTGAACATGTTTTGCCATCAATTGTTTATGTGTGTAGAATGGCTAGGCTGATTCTTAATGCTGGTGCAGATGCAGGAACTATGTCTATAAAGACAGATTTTGCAGGAAAGATGAAATCTAGGGCTGGAGGAAGAAAACCACTTGGTGATCTATCCAATGCAGTGAAGCCTATTGATATAGTAGATGGAAAGAAGGCCTTCAATGGTAGCACAATTAAACCCTCTGTCAATCAAACACCAAATCTACTCAAGTCCAAGAACAACCCCACTATTGTTCTACATAAGGATAAGGAAGTTGTTTCTGCCAAGGGAAAAAATCTTGAAATCAACAAAAGAACTGGCAGCAAAGCTTCTAAGAAGTCAAATACTGGCAGCAGGAGAGCACTTACTGACATCTCAAACTCGCTGCATGTACCTGATATGAAAAATAAGGACAGCCTGGACACTAGTTCTTTTAAAGGGAAATATCTTCATCCTGATGCAATTGCCGAAGAGCGGATGTTTCATAATCATGAAGAATGTATAAAATCACAAAGTCATGCATTGGATATGCATCATTTTTTCAAGACTGCTATACTTGGGGATGGTAATTAGTTATTTACTGATTCTAGATTCTGTTATGGTAATTTTGGCTGATCACTTTTACTTATTAATTGATTTATACATAACTTGATCAGATTTGGATGATGACATGAAAATTTCATTTGAACAGCCTGCTTTTAGCAAACTGAAGGTTCGTCTAAAACTACTTTCATTTCTCATGTGTGTTTCTCATGTGTTGTTTATCCTGTTTTGATTTTTTAACTATTTGGCCCTGCTTTTCAGTCTGATGATGCATTCCTGGAATTGAAGGAGATGCCTGAAGAGTTGCCTGATATGCCGTCTCCATCTGCTAAGCATGGTTCCCCAGTATGCTGCAAGAGTCCAGAATTTTCAAGGATTTCAATGTGGGATGACCCAGCTTTCGATTGCAATTTCACTTTGATAGAATCACCCAAATCGTCTAAAAACTGA

Protein sequence

>MS.gene60598.t1

MAARTVRLFQDQNVIDHVNDAGTMSIKTDFAGKMKSRAGGRKPLGDLSNAVKPIDIVDGKKAFNGSTIKPSVNQTPNLLKSKNNPTIVLHKDKEVVSAKGKNLEINKRTGSKASKKSNTGSRRALTDISNSLHVPDMKNKDSLDTSSFKGKYLHPDAIAEERMFHNHEECIKSQSHALDMHHFFKTAILGDDLDDDMKISFEQPAFSKLKSDDAFLELKEMPEELPDMPSPSAKHGSPVCCKSPEFSRISMWDDPAFDCNFTLIESPKSSKN