Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene61955.t1 | XP_024639271.1 | 95.5 | 266 | 12 | 0 | 1 | 266 | 1 | 266 | 7.60E-145 | 523.5 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene61955.t1 | Q2V6J9 | 34.5 | 261 | 160 | 5 | 10 | 264 | 11 | 266 | 1.7e-36 | 154.8 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene61955.t1 | G7K602 | 95.5 | 266 | 12 | 0 | 1 | 266 | 1 | 266 | 5.5e-145 | 523.5 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049828 | MS.gene61955 | 0.801926 | 7.15E-49 | -1.69E-46 |
MS.gene049907 | MS.gene61955 | 0.915267 | 7.21E-85 | -1.69E-46 |
MS.gene050520 | MS.gene61955 | 0.878787 | 2.12E-69 | -1.69E-46 |
MS.gene051255 | MS.gene61955 | 0.857551 | 1.51E-62 | -1.69E-46 |
MS.gene053813 | MS.gene61955 | 0.856912 | 2.33E-62 | -1.69E-46 |
MS.gene05492 | MS.gene61955 | 0.823835 | 1.12E-53 | -1.69E-46 |
MS.gene055412 | MS.gene61955 | 0.808957 | 2.40E-50 | -1.69E-46 |
MS.gene055647 | MS.gene61955 | 0.802716 | 4.92E-49 | -1.69E-46 |
MS.gene056422 | MS.gene61955 | 0.804756 | 1.85E-49 | -1.69E-46 |
MS.gene056942 | MS.gene61955 | 0.803157 | 3.99E-49 | -1.69E-46 |
MS.gene058293 | MS.gene61955 | 0.802012 | 6.87E-49 | -1.69E-46 |
MS.gene058459 | MS.gene61955 | 0.802475 | 5.51E-49 | -1.69E-46 |
MS.gene058903 | MS.gene61955 | 0.808832 | 2.55E-50 | -1.69E-46 |
MS.gene059680 | MS.gene61955 | 0.844979 | 5.41E-59 | -1.69E-46 |
MS.gene059711 | MS.gene61955 | 0.845559 | 3.77E-59 | -1.69E-46 |
MS.gene059974 | MS.gene61955 | 0.808717 | 2.70E-50 | -1.69E-46 |
MS.gene060005 | MS.gene61955 | 0.816939 | 4.27E-52 | -1.69E-46 |
MS.gene060356 | MS.gene61955 | 0.852185 | 5.45E-61 | -1.69E-46 |
MS.gene060800 | MS.gene61955 | 0.80393 | 2.76E-49 | -1.69E-46 |
MS.gene060801 | MS.gene61955 | 0.809695 | 1.67E-50 | -1.69E-46 |
MS.gene060837 | MS.gene61955 | 0.823162 | 1.61E-53 | -1.69E-46 |
MS.gene061200 | MS.gene61955 | 0.808674 | 2.76E-50 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene61955.t1 | MTR_5g067170 | 94.465 | 271 | 14 | 1 | 1 | 270 | 1 | 271 | 0.0 | 513 |
MS.gene61955.t1 | MTR_2g034990 | 74.721 | 269 | 64 | 2 | 1 | 266 | 1 | 268 | 5.28e-147 | 424 |
MS.gene61955.t1 | MTR_5g029800 | 76.692 | 266 | 60 | 2 | 1 | 266 | 1 | 264 | 2.96e-141 | 409 |
MS.gene61955.t1 | MTR_2g035020 | 69.888 | 269 | 77 | 2 | 1 | 266 | 1 | 268 | 3.58e-132 | 386 |
MS.gene61955.t1 | MTR_7g012120 | 68.030 | 269 | 79 | 4 | 1 | 266 | 6 | 270 | 1.06e-120 | 357 |
MS.gene61955.t1 | MTR_4g117960 | 56.393 | 305 | 126 | 4 | 1 | 302 | 1 | 301 | 2.73e-115 | 343 |
MS.gene61955.t1 | MTR_4g117980 | 59.480 | 269 | 105 | 2 | 1 | 266 | 1 | 268 | 2.17e-108 | 325 |
MS.gene61955.t1 | MTR_6g035185 | 54.902 | 306 | 131 | 4 | 1 | 302 | 1 | 303 | 5.93e-107 | 322 |
MS.gene61955.t1 | MTR_6g035265 | 55.446 | 303 | 125 | 5 | 1 | 302 | 1 | 294 | 6.13e-105 | 316 |
MS.gene61955.t1 | MTR_8g032950 | 55.556 | 288 | 116 | 5 | 2 | 281 | 3 | 286 | 3.81e-92 | 284 |
MS.gene61955.t1 | MTR_0536s0020 | 52.874 | 261 | 113 | 3 | 7 | 266 | 14 | 265 | 1.13e-89 | 277 |
MS.gene61955.t1 | MTR_4g117890 | 52.874 | 261 | 113 | 3 | 7 | 266 | 9 | 260 | 1.69e-89 | 276 |
MS.gene61955.t1 | MTR_4g118000 | 49.329 | 298 | 135 | 5 | 7 | 302 | 8 | 291 | 3.68e-88 | 273 |
MS.gene61955.t1 | MTR_0536s0010 | 48.185 | 303 | 144 | 5 | 6 | 307 | 16 | 306 | 6.95e-88 | 273 |
MS.gene61955.t1 | MTR_4g117950 | 47.987 | 298 | 143 | 6 | 6 | 302 | 1 | 287 | 7.23e-85 | 265 |
MS.gene61955.t1 | MTR_4g117970 | 56.633 | 196 | 76 | 3 | 75 | 268 | 53 | 241 | 6.15e-71 | 227 |
MS.gene61955.t1 | MTR_2g035040 | 66.434 | 143 | 47 | 1 | 115 | 257 | 23 | 164 | 2.37e-65 | 212 |
MS.gene61955.t1 | MTR_4g031800 | 38.168 | 262 | 150 | 5 | 8 | 264 | 6 | 260 | 2.07e-52 | 180 |
MS.gene61955.t1 | MTR_0536s0030 | 46.486 | 185 | 89 | 3 | 36 | 219 | 5 | 180 | 1.75e-46 | 162 |
MS.gene61955.t1 | MTR_2g035050 | 70.435 | 115 | 31 | 1 | 1 | 112 | 1 | 115 | 4.55e-46 | 154 |
MS.gene61955.t1 | MTR_4g485630 | 34.109 | 258 | 155 | 6 | 10 | 258 | 8 | 259 | 1.40e-39 | 146 |
MS.gene61955.t1 | MTR_6g035295 | 33.704 | 270 | 162 | 9 | 10 | 264 | 11 | 278 | 4.44e-36 | 136 |
MS.gene61955.t1 | MTR_5g039900 | 32.308 | 260 | 160 | 7 | 10 | 257 | 12 | 267 | 5.63e-36 | 136 |
MS.gene61955.t1 | MTR_5g045960 | 28.990 | 307 | 197 | 9 | 12 | 302 | 8 | 309 | 1.26e-34 | 132 |
MS.gene61955.t1 | MTR_7g102450 | 31.596 | 307 | 179 | 10 | 13 | 306 | 11 | 299 | 4.76e-34 | 130 |
MS.gene61955.t1 | MTR_5g016660 | 32.171 | 258 | 159 | 7 | 10 | 255 | 9 | 262 | 6.01e-34 | 130 |
MS.gene61955.t1 | MTR_7g117405 | 31.615 | 291 | 177 | 7 | 13 | 285 | 12 | 298 | 7.56e-34 | 130 |
MS.gene61955.t1 | MTR_7g070800 | 30.921 | 304 | 163 | 8 | 6 | 277 | 1 | 289 | 1.16e-33 | 130 |
MS.gene61955.t1 | MTR_7g055710 | 31.250 | 272 | 163 | 7 | 1 | 256 | 1 | 264 | 6.46e-33 | 128 |
MS.gene61955.t1 | MTR_7g070860 | 30.132 | 302 | 164 | 8 | 8 | 277 | 4 | 290 | 3.21e-32 | 125 |
MS.gene61955.t1 | MTR_4g485590 | 31.660 | 259 | 134 | 6 | 12 | 257 | 10 | 238 | 1.40e-31 | 123 |
MS.gene61955.t1 | MTR_7g070930 | 31.579 | 266 | 150 | 8 | 10 | 255 | 13 | 266 | 4.94e-31 | 122 |
MS.gene61955.t1 | MTR_7g071040 | 30.970 | 268 | 151 | 8 | 11 | 256 | 15 | 270 | 2.21e-30 | 121 |
MS.gene61955.t1 | MTR_7g070910 | 32.453 | 265 | 151 | 9 | 11 | 256 | 9 | 264 | 2.29e-30 | 120 |
MS.gene61955.t1 | MTR_5g045970 | 29.553 | 291 | 180 | 9 | 15 | 285 | 20 | 305 | 2.57e-30 | 120 |
MS.gene61955.t1 | MTR_7g070660 | 29.063 | 320 | 184 | 9 | 1 | 293 | 1 | 304 | 4.11e-30 | 120 |
MS.gene61955.t1 | MTR_7g070740 | 31.461 | 267 | 151 | 8 | 11 | 256 | 9 | 264 | 6.84e-30 | 119 |
MS.gene61955.t1 | MTR_7g070780 | 32.184 | 261 | 146 | 6 | 1 | 242 | 1 | 249 | 1.59e-29 | 118 |
MS.gene61955.t1 | MTR_8g066610 | 27.574 | 272 | 176 | 4 | 9 | 264 | 7 | 273 | 3.64e-29 | 117 |
MS.gene61955.t1 | MTR_7g102560 | 29.630 | 297 | 183 | 11 | 11 | 286 | 7 | 298 | 5.24e-29 | 117 |
MS.gene61955.t1 | MTR_5g040030 | 28.364 | 275 | 184 | 6 | 8 | 270 | 11 | 284 | 9.23e-29 | 116 |
MS.gene61955.t1 | MTR_7g070810 | 32.946 | 258 | 148 | 6 | 8 | 249 | 6 | 254 | 2.10e-28 | 115 |
MS.gene61955.t1 | MTR_7g070610 | 30.566 | 265 | 154 | 7 | 10 | 255 | 12 | 265 | 3.68e-28 | 114 |
MS.gene61955.t1 | MTR_1g062380 | 29.110 | 292 | 181 | 7 | 15 | 285 | 20 | 306 | 4.28e-27 | 111 |
MS.gene61955.t1 | MTR_7g102460 | 29.412 | 306 | 189 | 11 | 11 | 293 | 7 | 308 | 4.58e-27 | 111 |
MS.gene61955.t1 | MTR_4g108250 | 28.205 | 312 | 178 | 8 | 1 | 277 | 1 | 301 | 2.13e-26 | 109 |
MS.gene61955.t1 | MTR_7g070940 | 32.669 | 251 | 144 | 6 | 8 | 242 | 6 | 247 | 4.30e-26 | 108 |
MS.gene61955.t1 | MTR_7g102490 | 28.713 | 303 | 181 | 11 | 11 | 285 | 7 | 302 | 7.38e-26 | 108 |
MS.gene61955.t1 | MTR_1g040310 | 31.835 | 267 | 160 | 8 | 4 | 256 | 8 | 266 | 4.85e-25 | 105 |
MS.gene61955.t1 | MTR_7g071050 | 34.659 | 176 | 102 | 3 | 10 | 180 | 12 | 179 | 1.38e-24 | 103 |
MS.gene61955.t1 | MTR_4g024020 | 29.217 | 332 | 197 | 12 | 11 | 308 | 7 | 334 | 2.26e-24 | 103 |
MS.gene61955.t1 | MTR_4g485620 | 27.309 | 249 | 151 | 7 | 23 | 246 | 1 | 244 | 2.34e-24 | 103 |
MS.gene61955.t1 | MTR_7g070870 | 30.556 | 288 | 173 | 8 | 8 | 277 | 16 | 294 | 3.72e-23 | 100 |
MS.gene61955.t1 | MTR_4g485640 | 28.455 | 246 | 155 | 6 | 19 | 257 | 217 | 448 | 4.35e-22 | 97.8 |
MS.gene61955.t1 | MTR_8g044140 | 30.736 | 231 | 139 | 8 | 40 | 256 | 6 | 229 | 8.42e-22 | 96.3 |
MS.gene61955.t1 | MTR_7g102550 | 28.629 | 248 | 154 | 9 | 13 | 243 | 9 | 250 | 3.95e-21 | 94.4 |
MS.gene61955.t1 | MTR_7g102520 | 29.431 | 299 | 174 | 13 | 14 | 285 | 15 | 303 | 5.47e-21 | 94.0 |
MS.gene61955.t1 | MTR_7g039570 | 28.017 | 232 | 156 | 4 | 10 | 232 | 13 | 242 | 5.72e-21 | 90.9 |
MS.gene61955.t1 | MTR_7g470590 | 36.290 | 124 | 73 | 2 | 1 | 118 | 1 | 124 | 6.83e-18 | 79.3 |
MS.gene61955.t1 | MTR_7g070570 | 36.290 | 124 | 73 | 2 | 1 | 118 | 1 | 124 | 6.83e-18 | 79.3 |
MS.gene61955.t1 | MTR_0009s0240 | 26.033 | 242 | 169 | 5 | 12 | 245 | 8 | 247 | 3.26e-16 | 79.7 |
MS.gene61955.t1 | MTR_8g466240 | 26.562 | 256 | 170 | 9 | 16 | 264 | 13 | 257 | 4.90e-14 | 73.2 |
MS.gene61955.t1 | MTR_8g068330 | 30.147 | 136 | 93 | 2 | 7 | 141 | 4 | 138 | 8.48e-12 | 66.2 |
MS.gene61955.t1 | MTR_7g067330 | 30.137 | 146 | 94 | 4 | 9 | 149 | 5 | 147 | 4.56e-11 | 63.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene61955.t1 | AT2G36790 | 32.441 | 299 | 177 | 11 | 9 | 289 | 9 | 300 | 1.29e-35 | 135 |
MS.gene61955.t1 | AT4G34131 | 30.370 | 270 | 164 | 6 | 8 | 258 | 7 | 271 | 1.24e-34 | 132 |
MS.gene61955.t1 | AT2G36770 | 32.323 | 297 | 174 | 10 | 12 | 289 | 13 | 301 | 9.94e-34 | 130 |
MS.gene61955.t1 | AT2G36800 | 32.095 | 296 | 177 | 11 | 12 | 289 | 11 | 300 | 2.59e-32 | 126 |
MS.gene61955.t1 | AT2G36750 | 32.441 | 299 | 182 | 9 | 5 | 289 | 4 | 296 | 6.60e-32 | 125 |
MS.gene61955.t1 | AT2G15480 | 27.338 | 278 | 170 | 7 | 5 | 259 | 4 | 272 | 3.68e-31 | 123 |
MS.gene61955.t1 | AT2G15480 | 27.338 | 278 | 170 | 7 | 5 | 259 | 4 | 272 | 3.94e-31 | 123 |
MS.gene61955.t1 | AT2G15490 | 29.520 | 271 | 155 | 7 | 14 | 259 | 10 | 269 | 4.44e-31 | 122 |
MS.gene61955.t1 | AT2G36760 | 30.218 | 321 | 188 | 13 | 12 | 310 | 13 | 319 | 4.66e-31 | 122 |
MS.gene61955.t1 | AT2G15490 | 29.520 | 271 | 155 | 7 | 14 | 259 | 10 | 269 | 4.85e-31 | 122 |
MS.gene61955.t1 | AT2G36780 | 30.952 | 294 | 182 | 9 | 12 | 289 | 13 | 301 | 6.58e-31 | 122 |
MS.gene61955.t1 | AT4G34135 | 28.413 | 271 | 170 | 7 | 8 | 259 | 8 | 273 | 8.48e-31 | 119 |
MS.gene61955.t1 | AT4G34135 | 28.413 | 271 | 170 | 7 | 8 | 259 | 8 | 273 | 6.77e-30 | 119 |
MS.gene61955.t1 | AT4G34138 | 27.407 | 270 | 167 | 8 | 11 | 258 | 9 | 271 | 1.25e-28 | 115 |
MS.gene61955.t1 | AT3G53150 | 26.471 | 306 | 192 | 9 | 6 | 285 | 15 | 313 | 9.76e-28 | 114 |
MS.gene61955.t1 | AT3G53160 | 30.182 | 275 | 172 | 8 | 9 | 268 | 6 | 275 | 4.01e-27 | 111 |
MS.gene61955.t1 | AT2G15490 | 28.413 | 271 | 159 | 8 | 14 | 266 | 10 | 263 | 1.05e-23 | 99.0 |
MS.gene61955.t1 | AT5G03490 | 29.801 | 151 | 102 | 3 | 5 | 152 | 13 | 162 | 2.14e-13 | 71.2 |
MS.gene61955.t1 | AT1G51210 | 32.895 | 152 | 84 | 7 | 10 | 152 | 17 | 159 | 1.14e-12 | 68.9 |
MS.gene61955.t1 | AT1G73880 | 25.188 | 266 | 148 | 12 | 5 | 240 | 6 | 250 | 9.94e-12 | 66.2 |
Find 84 sgRNAs with CRISPR-Local
Find 212 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTCAGCTGTTGTTATCTTTC+AGG | 0.103931 | 5.2:-57221386 | MS.gene61955:CDS |
AAGGTTCTTGGTTCTGTTTC+AGG | 0.167910 | 5.2:-57222550 | MS.gene61955:CDS |
TTATCTGGTGTCAAGGTTCT+TGG | 0.202879 | 5.2:-57222562 | MS.gene61955:CDS |
TCATCTTCACTTCAGCTCTT+AGG | 0.278266 | 5.2:-57221591 | MS.gene61955:intron |
GGGGAGGTCGACTTGTTTAT+AGG | 0.293527 | 5.2:+57224218 | None:intergenic |
GGGAGGTCGACTTGTTTATA+GGG | 0.318865 | 5.2:+57224219 | None:intergenic |
GATCCATTGAATGTTAAATT+CGG | 0.334638 | 5.2:+57224018 | None:intergenic |
GTCATAGATTCAACGCCTTC+GGG | 0.341297 | 5.2:+57224198 | None:intergenic |
ATATTATCATGATGAAGATT+TGG | 0.351658 | 5.2:+57223898 | None:intergenic |
TTGCTGATTCCGCGTTCTCA+TGG | 0.354036 | 5.2:-57224071 | MS.gene61955:CDS |
ATCCCGAATTTAACATTCAA+TGG | 0.363700 | 5.2:-57224021 | MS.gene61955:CDS |
TGCTCCTCAATGAAGCGGTT+GGG | 0.370429 | 5.2:-57224128 | MS.gene61955:CDS |
TGAATCTTCCAAGTGGTGAT+AGG | 0.373028 | 5.2:+57224162 | None:intergenic |
ATGTGGTACTACTCTTTATC+TGG | 0.376125 | 5.2:-57222577 | MS.gene61955:CDS |
AAGCAAGGCTAAATAAAGTT+TGG | 0.379369 | 5.2:+57221423 | None:intergenic |
GGCGGCAGATGAGAGAGTTT+TGG | 0.395393 | 5.2:+57224266 | None:intergenic |
ATCCATTGAATGTTAAATTC+GGG | 0.400611 | 5.2:+57224019 | None:intergenic |
GGTCATAGATTCAACGCCTT+CGG | 0.411630 | 5.2:+57224197 | None:intergenic |
ATGAACATGCTGAGAACCTT+TGG | 0.425074 | 5.2:+57223856 | None:intergenic |
CTTCTCTGCTTTCTCTTGAA+CGG | 0.427831 | 5.2:+57223684 | None:intergenic |
TTCATTCCGTATCCAGCATC+TGG | 0.429905 | 5.2:-57224384 | MS.gene61955:CDS |
GTTCTCATGGGCTAATGACT+TGG | 0.447500 | 5.2:-57224058 | MS.gene61955:CDS |
ACCACTTGGAAGATTCATAA+TGG | 0.450011 | 5.2:-57224156 | MS.gene61955:CDS |
GGTCACAAGGCTTGGCATCT+TGG | 0.455150 | 5.2:-57223730 | MS.gene61955:CDS |
GGCATCATGTGTCCAGATGC+TGG | 0.461672 | 5.2:+57224372 | None:intergenic |
ATTCGGGATTTGAAGCTTGT+GGG | 0.466780 | 5.2:+57224035 | None:intergenic |
AAGTAAATTATTTGTTCGAA+GGG | 0.467021 | 5.2:+57223966 | None:intergenic |
TGCTGATTCCGCGTTCTCAT+GGG | 0.468665 | 5.2:-57224070 | MS.gene61955:CDS |
TCCAAGTCCAACATAAAATA+CGG | 0.472287 | 5.2:+57221448 | None:intergenic |
GGTAAGGGATTGAGCATTGG+AGG | 0.477314 | 5.2:+57224287 | None:intergenic |
AAACCACGGGTCACAAGGCT+TGG | 0.486946 | 5.2:-57223738 | MS.gene61955:CDS |
CCACATAGATTTATTCATTG+AGG | 0.488635 | 5.2:+57222594 | None:intergenic |
GAAGTAAATTATTTGTTCGA+AGG | 0.489932 | 5.2:+57223965 | None:intergenic |
GCTCCTCAATGAAGCGGTTG+GGG | 0.493595 | 5.2:-57224127 | MS.gene61955:CDS |
CGTTCAAGAGAAAGCAGAGA+AGG | 0.498720 | 5.2:-57223683 | MS.gene61955:CDS |
GGTGATAGGGTCAGTGGTGG+AGG | 0.500284 | 5.2:+57224176 | None:intergenic |
TTTGGTAAGGGATTGAGCAT+TGG | 0.505959 | 5.2:+57224284 | None:intergenic |
AGCTGAAGTGAAGATGAGAT+AGG | 0.511604 | 5.2:+57221597 | None:intergenic |
AATTCGGGATTTGAAGCTTG+TGG | 0.512657 | 5.2:+57224034 | None:intergenic |
CTTTGGTGGTTTACTACACA+AGG | 0.515061 | 5.2:+57223873 | None:intergenic |
TGCCGCCCTCCGCCTTCACA+CGG | 0.515363 | 5.2:-57224250 | MS.gene61955:CDS |
GAATCTTCCAAGTGGTGATA+GGG | 0.519461 | 5.2:+57224163 | None:intergenic |
AGTCAACCGTGTGAAGGCGG+AGG | 0.521386 | 5.2:+57224244 | None:intergenic |
CTACTCTTTATCTGGTGTCA+AGG | 0.524262 | 5.2:-57222569 | MS.gene61955:CDS |
ATGCTCCTCAATGAAGCGGT+TGG | 0.528044 | 5.2:-57224129 | MS.gene61955:CDS |
GGAATGAAGTGAAGTTTCAA+TGG | 0.529260 | 5.2:+57224399 | None:intergenic |
AAGGTTCTCAGCATGTTCAT+AGG | 0.529589 | 5.2:-57223853 | MS.gene61955:CDS |
ATGTGTCCAGATGCTGGATA+CGG | 0.533156 | 5.2:+57224378 | None:intergenic |
CGAGAAAACCACGGGTCACA+AGG | 0.547846 | 5.2:-57223743 | MS.gene61955:CDS |
ATAAGTTGATAAGAAATGAA+TGG | 0.552177 | 5.2:-57224438 | None:intergenic |
GTAAGGGATTGAGCATTGGA+GGG | 0.556034 | 5.2:+57224288 | None:intergenic |
ATGAAGATTTGGAACGACAT+AGG | 0.564250 | 5.2:+57223909 | None:intergenic |
GCAACTTTGTTTGCATCACG+TGG | 0.570638 | 5.2:-57224336 | MS.gene61955:CDS |
AACCGTGTGAAGGCGGAGGG+CGG | 0.573153 | 5.2:+57224248 | None:intergenic |
CCAAGTGGTGATAGGGTCAG+TGG | 0.574143 | 5.2:+57224170 | None:intergenic |
GTCAACCGTGTGAAGGCGGA+GGG | 0.575466 | 5.2:+57224245 | None:intergenic |
CGCAATGCTCCTCAATGAAG+CGG | 0.576488 | 5.2:-57224133 | MS.gene61955:CDS |
CCACTGACCCTATCACCACT+TGG | 0.579409 | 5.2:-57224170 | MS.gene61955:CDS |
TTTCGTTGAGAAGAATCCAC+CGG | 0.580184 | 5.2:-57224103 | MS.gene61955:CDS |
GTTCAAGAGAAAGCAGAGAA+GGG | 0.583746 | 5.2:-57223682 | MS.gene61955:CDS |
GACACAGTGCTTAAAAGTAC+AGG | 0.584468 | 5.2:-57223820 | MS.gene61955:CDS |
GAATCAGCAATGATACAATC+CGG | 0.589174 | 5.2:+57224084 | None:intergenic |
ACCTCAGGTTCTCTAGTCAA+AGG | 0.592075 | 5.2:-57221630 | MS.gene61955:intron |
AATCCCCAACCGCTTCATTG+AGG | 0.601705 | 5.2:+57224124 | None:intergenic |
AACATGCTGAGAACCTTTGG+TGG | 0.602305 | 5.2:+57223859 | None:intergenic |
AAAGTTGCTATATCACAAAG+AGG | 0.603748 | 5.2:+57224351 | None:intergenic |
ATGCCAAGCCTTGTGACCCG+TGG | 0.606140 | 5.2:+57223735 | None:intergenic |
AAACAAGTCGACCTCCCCGA+AGG | 0.612136 | 5.2:-57224213 | MS.gene61955:CDS |
AGGGGAAGTCAACCGTGTGA+AGG | 0.619522 | 5.2:+57224238 | None:intergenic |
GGAAGTCAACCGTGTGAAGG+CGG | 0.619756 | 5.2:+57224241 | None:intergenic |
GTCATTAGCCCATGAGAACG+CGG | 0.627749 | 5.2:+57224062 | None:intergenic |
CCTCAATGAATAAATCTATG+TGG | 0.629420 | 5.2:-57222594 | MS.gene61955:CDS |
TAGATTCAACGCCTTCGGGG+AGG | 0.631863 | 5.2:+57224202 | None:intergenic |
CAACACTACGAGAAAACCAC+GGG | 0.646166 | 5.2:-57223751 | MS.gene61955:CDS |
CTTGTGTAGTAAACCACCAA+AGG | 0.649958 | 5.2:-57223872 | MS.gene61955:CDS |
GGAGGTCGACTTGTTTATAG+GGG | 0.651753 | 5.2:+57224220 | None:intergenic |
AGTGGTGATAGGGTCAGTGG+TGG | 0.652762 | 5.2:+57224173 | None:intergenic |
TAGTGATGATTGTGACATGT+TGG | 0.656212 | 5.2:+57224313 | None:intergenic |
GCCATTATGAATCTTCCAAG+TGG | 0.663209 | 5.2:+57224155 | None:intergenic |
GCTACTGATATCAACAAGCA+AGG | 0.671839 | 5.2:+57221408 | None:intergenic |
AAATACGGATTGAGAAACTG+TGG | 0.681021 | 5.2:+57221463 | None:intergenic |
TCATAGATTCAACGCCTTCG+GGG | 0.681452 | 5.2:+57224199 | None:intergenic |
TCAGCAATGATACAATCCGG+TGG | 0.697559 | 5.2:+57224087 | None:intergenic |
CCAACACTACGAGAAAACCA+CGG | 0.724475 | 5.2:-57223752 | MS.gene61955:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AATTTCATAATCATAGATTT+AGG | - | chr5.2:57223511-57223530 | MS.gene61955:intron | 15.0% |
!! | AAAAATGAAGTAATCATTTG+AGG | + | chr5.2:57223386-57223405 | None:intergenic | 20.0% |
!! | AAGTAAATTATTTGTTCGAA+GGG | + | chr5.2:57221835-57221854 | None:intergenic | 20.0% |
!! | ACTTTGAATATTATGGTATA+TGG | + | chr5.2:57223327-57223346 | None:intergenic | 20.0% |
!! | ATATTATACAACTTCAAAGA+AGG | + | chr5.2:57223647-57223666 | None:intergenic | 20.0% |
!! | ATATTATCATGATGAAGATT+TGG | + | chr5.2:57221903-57221922 | None:intergenic | 20.0% |
!! | CTTTGAATATTATGGTATAT+GGG | + | chr5.2:57223326-57223345 | None:intergenic | 20.0% |
!!! | ATATGTCGATAATATTGTTT+TGG | - | chr5.2:57223438-57223457 | MS.gene61955:intron | 20.0% |
!!! | GATTACTTCATTTTTAGTTT+TGG | - | chr5.2:57223391-57223410 | MS.gene61955:intron | 20.0% |
!!! | TTTTATCTTCTTCTCTAATA+AGG | + | chr5.2:57223755-57223774 | None:intergenic | 20.0% |
! | AAAGAAGGGTTTCATAATTA+GGG | - | chr5.2:57222391-57222410 | MS.gene61955:intron | 25.0% |
! | AGCTAACAAATTATTATGAG+AGG | + | chr5.2:57222777-57222796 | None:intergenic | 25.0% |
! | ATAGTTGTTTATCAGAGAAA+TGG | + | chr5.2:57222235-57222254 | None:intergenic | 25.0% |
! | ATCCATTGAATGTTAAATTC+GGG | + | chr5.2:57221782-57221801 | None:intergenic | 25.0% |
! | CATGATTAATCAAAGGAATA+TGG | - | chr5.2:57222836-57222855 | MS.gene61955:intron | 25.0% |
! | GAAGTAAATTATTTGTTCGA+AGG | + | chr5.2:57221836-57221855 | None:intergenic | 25.0% |
! | GACTTATGATACTTACAAAT+TGG | + | chr5.2:57223281-57223300 | None:intergenic | 25.0% |
! | GATCCATTGAATGTTAAATT+CGG | + | chr5.2:57221783-57221802 | None:intergenic | 25.0% |
! | GATGACAACTTTGAATATTA+TGG | + | chr5.2:57223334-57223353 | None:intergenic | 25.0% |
! | TATTCCTTTGATTAATCATG+TGG | + | chr5.2:57222836-57222855 | None:intergenic | 25.0% |
!! | AACAATTTTGTTGAACTTGA+TGG | - | chr5.2:57222011-57222030 | MS.gene61955:intron | 25.0% |
!!! | AAAGTTCTAAGTTCTTACAA+AGG | + | chr5.2:57223686-57223705 | None:intergenic | 25.0% |
!!! | ACTAAAACAATAACTTGCTA+TGG | + | chr5.2:57224277-57224296 | None:intergenic | 25.0% |
!!! | TACAAGTAAAAAGAGCATTA+TGG | + | chr5.2:57223182-57223201 | None:intergenic | 25.0% |
AAAGTTGCTATATCACAAAG+AGG | + | chr5.2:57221450-57221469 | None:intergenic | 30.0% | |
AAGAACTTAGAACTTTCACT+TGG | - | chr5.2:57223690-57223709 | MS.gene61955:CDS | 30.0% | |
AAGAAGGGTTTCATAATTAG+GGG | - | chr5.2:57222392-57222411 | MS.gene61955:intron | 30.0% | |
AAGCAAGGCTAAATAAAGTT+TGG | + | chr5.2:57224378-57224397 | None:intergenic | 30.0% | |
AAGCATTAATGCTATGGATT+TGG | - | chr5.2:57222908-57222927 | MS.gene61955:intron | 30.0% | |
AGCAGTATTATGCAAATCAA+AGG | - | chr5.2:57223145-57223164 | MS.gene61955:intron | 30.0% | |
ATCCCGAATTTAACATTCAA+TGG | - | chr5.2:57221777-57221796 | MS.gene61955:intron | 30.0% | |
CAAACCACATGATTAATCAA+AGG | - | chr5.2:57222829-57222848 | MS.gene61955:intron | 30.0% | |
CACATGGTTTAGTAACAAAA+TGG | + | chr5.2:57224117-57224136 | None:intergenic | 30.0% | |
CCAAGAAAGTAGTAAATTGA+AGG | + | chr5.2:57223417-57223436 | None:intergenic | 30.0% | |
CCACATAGATTTATTCATTG+AGG | + | chr5.2:57223207-57223226 | None:intergenic | 30.0% | |
CCTCAATGAATAAATCTATG+TGG | - | chr5.2:57223204-57223223 | MS.gene61955:intron | 30.0% | |
CCTTCAATTTACTACTTTCT+TGG | - | chr5.2:57223414-57223433 | MS.gene61955:intron | 30.0% | |
GAAAGAAGGGTTTCATAATT+AGG | - | chr5.2:57222390-57222409 | MS.gene61955:intron | 30.0% | |
GTATCATAAGTCCTTCTATA+TGG | - | chr5.2:57223289-57223308 | MS.gene61955:intron | 30.0% | |
TCCAAGTCCAACATAAAATA+CGG | + | chr5.2:57224353-57224372 | None:intergenic | 30.0% | |
! | ATTGTTTGAGACCATATAGA+AGG | + | chr5.2:57223303-57223322 | None:intergenic | 30.0% |
! | ATTTTATCCTAAAGAGATCC+AGG | + | chr5.2:57223359-57223378 | None:intergenic | 30.0% |
! | GCATATTTCAATTTTCACTG+TGG | - | chr5.2:57223015-57223034 | MS.gene61955:intron | 30.0% |
! | GTTTTACGAATAAAGGAAGT+TGG | + | chr5.2:57222095-57222114 | None:intergenic | 30.0% |
! | TAGTGAAGTACTTTAGTAAC+AGG | + | chr5.2:57224149-57224168 | None:intergenic | 30.0% |
! | TCAGTTGTGTACATATGTTT+TGG | - | chr5.2:57222200-57222219 | MS.gene61955:intron | 30.0% |
! | TCTCAATCCGTATTTTATGT+TGG | - | chr5.2:57224343-57224362 | MS.gene61955:CDS | 30.0% |
! | TTGAACGGTTTTACGAATAA+AGG | + | chr5.2:57222102-57222121 | None:intergenic | 30.0% |
!! | GAAGAGTATTGCTCAATAAA+AGG | - | chr5.2:57223875-57223894 | MS.gene61955:CDS | 30.0% |
!! | TTAACTTGTTAAGTCATGTC+TGG | - | chr5.2:57223483-57223502 | MS.gene61955:intron | 30.0% |
!!! | AAAAATGCTTTGCTGTTTTC+AGG | - | chr5.2:57222959-57222978 | MS.gene61955:intron | 30.0% |
AATGGTGTACAAATGGTAAC+GGG | - | chr5.2:57222609-57222628 | MS.gene61955:intron | 35.0% | |
ACCACTTGGAAGATTCATAA+TGG | - | chr5.2:57221642-57221661 | MS.gene61955:intron | 35.0% | |
ATAACAACAGTCCGAAGAAT+TGG | - | chr5.2:57222566-57222585 | MS.gene61955:CDS | 35.0% | |
ATGTGGTACTACTCTTTATC+TGG | - | chr5.2:57223221-57223240 | MS.gene61955:intron | 35.0% | |
ATTCAAAGTTGTCATCAACC+TGG | - | chr5.2:57223338-57223357 | MS.gene61955:intron | 35.0% | |
GAATCAGCAATGATACAATC+CGG | + | chr5.2:57221717-57221736 | None:intergenic | 35.0% | |
GAATGGTGTACAAATGGTAA+CGG | - | chr5.2:57222608-57222627 | MS.gene61955:intron | 35.0% | |
GAGAGAAACATTGGAAAGAA+GGG | - | chr5.2:57222377-57222396 | MS.gene61955:intron | 35.0% | |
GGAATGAAGTGAAGTTTCAA+TGG | + | chr5.2:57221402-57221421 | None:intergenic | 35.0% | |
TAGTGATGATTGTGACATGT+TGG | + | chr5.2:57221488-57221507 | None:intergenic | 35.0% | |
TATTGTACTTGAGCACAACA+AGG | - | chr5.2:57224062-57224081 | MS.gene61955:CDS | 35.0% | |
TCGAAGAAGAGAAAGAAAAG+TGG | - | chr5.2:57222336-57222355 | MS.gene61955:intron | 35.0% | |
TTAGCTTACTGCAAGCTAAT+TGG | - | chr5.2:57224029-57224048 | MS.gene61955:CDS | 35.0% | |
! | AAATACGGATTGAGAAACTG+TGG | + | chr5.2:57224338-57224357 | None:intergenic | 35.0% |
! | ATGAAGATTTGGAACGACAT+AGG | + | chr5.2:57221892-57221911 | None:intergenic | 35.0% |
! | GAAGTACTTTAGTAACAGGT+TGG | + | chr5.2:57224145-57224164 | None:intergenic | 35.0% |
! | TCCGTATTTTATGTTGGACT+TGG | - | chr5.2:57224349-57224368 | MS.gene61955:CDS | 35.0% |
!! | AAGCAGAAGCATTAATGCTA+TGG | - | chr5.2:57222902-57222921 | MS.gene61955:intron | 35.0% |
!! | AGATGAGAGAGTTTTGGTAA+GGG | + | chr5.2:57221529-57221548 | None:intergenic | 35.0% |
!!! | CTTTGCTGTTTTCAGGATTT+CGG | - | chr5.2:57222966-57222985 | MS.gene61955:intron | 35.0% |
AACTCAATTGTAGAGGCTGT+TGG | - | chr5.2:57222482-57222501 | MS.gene61955:intron | 40.0% | |
AAGGTTCTCAGCATGTTCAT+AGG | - | chr5.2:57221945-57221964 | MS.gene61955:intron | 40.0% | |
ACACGAGCTATTAAAGAAGG+TGG | - | chr5.2:57222749-57222768 | MS.gene61955:intron | 40.0% | |
AGCTGAAGTGAAGATGAGAT+AGG | + | chr5.2:57224204-57224223 | None:intergenic | 40.0% | |
AGGGTTTCATAATTAGGGGT+TGG | - | chr5.2:57222396-57222415 | MS.gene61955:intron | 40.0% | |
ATAACATAGAGAAGGCTGTG+AGG | - | chr5.2:57222657-57222676 | MS.gene61955:intron | 40.0% | |
ATGAACATGCTGAGAACCTT+TGG | + | chr5.2:57221945-57221964 | None:intergenic | 40.0% | |
ATTGCGTTCCTTGAAGAAAG+TGG | - | chr5.2:57223583-57223602 | MS.gene61955:intron | 40.0% | |
CTACTTCCACTCCAATTCTT+CGG | + | chr5.2:57222580-57222599 | None:intergenic | 40.0% | |
CTCAGCTGTTGTTATCTTTC+AGG | - | chr5.2:57224412-57224431 | MS.gene61955:CDS | 40.0% | |
CTTCTCTGCTTTCTCTTGAA+CGG | + | chr5.2:57222117-57222136 | None:intergenic | 40.0% | |
CTTGTGTAGTAAACCACCAA+AGG | - | chr5.2:57221926-57221945 | MS.gene61955:intron | 40.0% | |
GAATCTTCCAAGTGGTGATA+GGG | + | chr5.2:57221638-57221657 | None:intergenic | 40.0% | |
GAGCAGAGATAACATAGAGA+AGG | - | chr5.2:57222649-57222668 | MS.gene61955:intron | 40.0% | |
GCCATTATGAATCTTCCAAG+TGG | + | chr5.2:57221646-57221665 | None:intergenic | 40.0% | |
GCTACACGAGCTATTAAAGA+AGG | - | chr5.2:57222746-57222765 | MS.gene61955:intron | 40.0% | |
GCTACTGATATCAACAAGCA+AGG | + | chr5.2:57224393-57224412 | None:intergenic | 40.0% | |
GGAGAGAAACATTGGAAAGA+AGG | - | chr5.2:57222376-57222395 | MS.gene61955:intron | 40.0% | |
GGATTTGAGGAGAGAAACAT+TGG | - | chr5.2:57222368-57222387 | MS.gene61955:intron | 40.0% | |
GGGTTTCATAATTAGGGGTT+GGG | - | chr5.2:57222397-57222416 | MS.gene61955:intron | 40.0% | |
GTTCAAGAGAAAGCAGAGAA+GGG | - | chr5.2:57222116-57222135 | MS.gene61955:intron | 40.0% | |
TCATCAACCTGGATCTCTTT+AGG | - | chr5.2:57223349-57223368 | MS.gene61955:intron | 40.0% | |
TCATCTTCACTTCAGCTCTT+AGG | - | chr5.2:57224207-57224226 | MS.gene61955:CDS | 40.0% | |
TCTTCTTTCCCTTTCTTCTC+AGG | + | chr5.2:57222311-57222330 | None:intergenic | 40.0% | |
TGAATCTTCCAAGTGGTGAT+AGG | + | chr5.2:57221639-57221658 | None:intergenic | 40.0% | |
TTTCGTTGAGAAGAATCCAC+CGG | - | chr5.2:57221695-57221714 | MS.gene61955:intron | 40.0% | |
TTTCTCTCCTCAAATCCCTT+CGG | + | chr5.2:57222365-57222384 | None:intergenic | 40.0% | |
TTTGGTAAGGGATTGAGCAT+TGG | + | chr5.2:57221517-57221536 | None:intergenic | 40.0% | |
! | AATTCGGGATTTGAAGCTTG+TGG | + | chr5.2:57221767-57221786 | None:intergenic | 40.0% |
! | ATGGTGTACAAATGGTAACG+GGG | - | chr5.2:57222610-57222629 | MS.gene61955:intron | 40.0% |
! | ATTCGGGATTTGAAGCTTGT+GGG | + | chr5.2:57221766-57221785 | None:intergenic | 40.0% |
! | CTAAAGTACTTCACTACCTC+AGG | - | chr5.2:57224153-57224172 | MS.gene61955:CDS | 40.0% |
! | CTACTCTTTATCTGGTGTCA+AGG | - | chr5.2:57223229-57223248 | MS.gene61955:intron | 40.0% |
! | CTTTGGTGGTTTACTACACA+AGG | + | chr5.2:57221928-57221947 | None:intergenic | 40.0% |
! | GACACAGTGCTTAAAAGTAC+AGG | - | chr5.2:57221978-57221997 | MS.gene61955:intron | 40.0% |
! | GTAACGGAATGGTGTACAAA+TGG | - | chr5.2:57222602-57222621 | MS.gene61955:intron | 40.0% |
! | TTAGGCACACTCCATTTTGT+CGG | - | chr5.2:57223529-57223548 | MS.gene61955:intron | 40.0% |
! | TTATCTGGTGTCAAGGTTCT+TGG | - | chr5.2:57223236-57223255 | MS.gene61955:intron | 40.0% |
!! | AAGGTTCTTGGTTCTGTTTC+AGG | - | chr5.2:57223248-57223267 | MS.gene61955:intron | 40.0% |
!! | CAGATGAGAGAGTTTTGGTA+AGG | + | chr5.2:57221530-57221549 | None:intergenic | 40.0% |
!! | TAACAGGTTGGTAATGCACA+TGG | + | chr5.2:57224133-57224152 | None:intergenic | 40.0% |
AAAGAAAAGTGGCTGCCGAA+GGG | - | chr5.2:57222347-57222366 | MS.gene61955:intron | 45.0% | |
AACAGTCCGAAGAATTGGAG+TGG | - | chr5.2:57222571-57222590 | MS.gene61955:CDS | 45.0% | |
AACATGCTGAGAACCTTTGG+TGG | + | chr5.2:57221942-57221961 | None:intergenic | 45.0% | |
AAGAAAGTGGTCAGCTAGCT+AGG | - | chr5.2:57223596-57223615 | MS.gene61955:intron | 45.0% | |
ACCTCAGGTTCTCTAGTCAA+AGG | - | chr5.2:57224168-57224187 | MS.gene61955:CDS | 45.0% | |
ATCAGGTCACCCATTCGTAT+GGG | - | chr5.2:57222280-57222299 | MS.gene61955:intron | 45.0% | |
ATGTGTCCAGATGCTGGATA+CGG | + | chr5.2:57221423-57221442 | None:intergenic | 45.0% | |
CAACACTACGAGAAAACCAC+GGG | - | chr5.2:57222047-57222066 | MS.gene61955:intron | 45.0% | |
CAGGAACAACCCATACGAAT+GGG | + | chr5.2:57222292-57222311 | None:intergenic | 45.0% | |
CCAACACTACGAGAAAACCA+CGG | - | chr5.2:57222046-57222065 | MS.gene61955:intron | 45.0% | |
CGAAGAATTGGAGTGGAAGT+AGG | - | chr5.2:57222578-57222597 | MS.gene61955:CDS | 45.0% | |
CGTTCAAGAGAAAGCAGAGA+AGG | - | chr5.2:57222115-57222134 | MS.gene61955:intron | 45.0% | |
CTAGCTGACCACTTTCTTCA+AGG | + | chr5.2:57223594-57223613 | None:intergenic | 45.0% | |
CTGAAGTGATCTGCATGACA+AGG | + | chr5.2:57222533-57222552 | None:intergenic | 45.0% | |
GATTTCTGACACATTGTGGG+GGG | - | chr5.2:57222459-57222478 | MS.gene61955:intron | 45.0% | |
GCTCAATATCAGGACTTGTG+GGG | + | chr5.2:57222423-57222442 | None:intergenic | 45.0% | |
GGATTTCTGACACATTGTGG+GGG | - | chr5.2:57222458-57222477 | MS.gene61955:intron | 45.0% | |
GGCTCAATATCAGGACTTGT+GGG | + | chr5.2:57222424-57222443 | None:intergenic | 45.0% | |
GGGATTTCTGACACATTGTG+GGG | - | chr5.2:57222457-57222476 | MS.gene61955:intron | 45.0% | |
GGGGATTTCTGACACATTGT+GGG | - | chr5.2:57222456-57222475 | MS.gene61955:intron | 45.0% | |
GGGTTGTTCCTGAGAAGAAA+GGG | - | chr5.2:57222300-57222319 | MS.gene61955:intron | 45.0% | |
GGTCATAGATTCAACGCCTT+CGG | + | chr5.2:57221604-57221623 | None:intergenic | 45.0% | |
GTCATAGATTCAACGCCTTC+GGG | + | chr5.2:57221603-57221622 | None:intergenic | 45.0% | |
GTTGTGATTTGAGCCAGTTC+AGG | + | chr5.2:57222172-57222191 | None:intergenic | 45.0% | |
TAACGGGGAGAGAAAGAAGT+TGG | - | chr5.2:57222625-57222644 | MS.gene61955:intron | 45.0% | |
TCAGCAATGATACAATCCGG+TGG | + | chr5.2:57221714-57221733 | None:intergenic | 45.0% | |
TCAGGAACAACCCATACGAA+TGG | + | chr5.2:57222293-57222312 | None:intergenic | 45.0% | |
TCATAGATTCAACGCCTTCG+GGG | + | chr5.2:57221602-57221621 | None:intergenic | 45.0% | |
TGACAAGGCCACGTTATCAT+TGG | + | chr5.2:57222518-57222537 | None:intergenic | 45.0% | |
TGCTTCTGCTTGACGAAACA+AGG | + | chr5.2:57222893-57222912 | None:intergenic | 45.0% | |
TGGAGTGGAAGTAGGTGTAA+CGG | - | chr5.2:57222586-57222605 | MS.gene61955:CDS | 45.0% | |
TGGCTCAATATCAGGACTTG+TGG | + | chr5.2:57222425-57222444 | None:intergenic | 45.0% | |
TGGGTTGTTCCTGAGAAGAA+AGG | - | chr5.2:57222299-57222318 | MS.gene61955:intron | 45.0% | |
TTCATTCCGTATCCAGCATC+TGG | - | chr5.2:57221414-57221433 | MS.gene61955:CDS | 45.0% | |
! | GCAACTTTGTTTGCATCACG+TGG | - | chr5.2:57221462-57221481 | MS.gene61955:CDS | 45.0% |
! | GTTCTCATGGGCTAATGACT+TGG | - | chr5.2:57221740-57221759 | MS.gene61955:intron | 45.0% |
! | TAGGCACACTCCATTTTGTC+GGG | - | chr5.2:57223530-57223549 | MS.gene61955:intron | 45.0% |
! | TGGAAGTAGGTGTAACGGAA+TGG | - | chr5.2:57222591-57222610 | MS.gene61955:CDS | 45.0% |
!! | GGAGGTCGACTTGTTTATAG+GGG | + | chr5.2:57221581-57221600 | None:intergenic | 45.0% |
!! | GGATTTTCTAGAAGCGAGAC+TGG | + | chr5.2:57224256-57224275 | None:intergenic | 45.0% |
!! | GGGAGGTCGACTTGTTTATA+GGG | + | chr5.2:57221582-57221601 | None:intergenic | 45.0% |
!! | GTAAGGGATTGAGCATTGGA+GGG | + | chr5.2:57221513-57221532 | None:intergenic | 45.0% |
!! | TTTTCTAGAAGCGAGACTGG+TGG | + | chr5.2:57224253-57224272 | None:intergenic | 45.0% |
AATCCCCAACCGCTTCATTG+AGG | + | chr5.2:57221677-57221696 | None:intergenic | 50.0% | |
AATTGTAGAGGCTGTTGGCG+CGG | - | chr5.2:57222487-57222506 | MS.gene61955:intron | 50.0% | |
AGACAACGTGCTCGAGAGTT+AGG | - | chr5.2:57222716-57222735 | MS.gene61955:intron | 50.0% | |
ATGCTCCTCAATGAAGCGGT+TGG | - | chr5.2:57221669-57221688 | MS.gene61955:intron | 50.0% | |
CATCAGGTCACCCATTCGTA+TGG | - | chr5.2:57222279-57222298 | MS.gene61955:intron | 50.0% | |
CGCAATGCTCCTCAATGAAG+CGG | - | chr5.2:57221665-57221684 | MS.gene61955:intron | 50.0% | |
GAAAGAAAAGTGGCTGCCGA+AGG | - | chr5.2:57222346-57222365 | MS.gene61955:intron | 50.0% | |
GAAGGCTGTGAGGAGATTGA+TGG | - | chr5.2:57222667-57222686 | MS.gene61955:intron | 50.0% | |
GCAGTTTGACCCCGACAAAA+TGG | + | chr5.2:57223543-57223562 | None:intergenic | 50.0% | |
GCCTTTGACTAGAGAACCTG+AGG | + | chr5.2:57224172-57224191 | None:intergenic | 50.0% | |
GCTGTGAGGAGATTGATGGA+CGG | - | chr5.2:57222671-57222690 | MS.gene61955:intron | 50.0% | |
GGGGGATTTCTGACACATTG+TGG | - | chr5.2:57222455-57222474 | MS.gene61955:intron | 50.0% | |
GTCATTAGCCCATGAGAACG+CGG | + | chr5.2:57221739-57221758 | None:intergenic | 50.0% | |
TGCTCCTCAATGAAGCGGTT+GGG | - | chr5.2:57221670-57221689 | MS.gene61955:intron | 50.0% | |
TGCTCGAGAGTTAGGAGAGA+AGG | - | chr5.2:57222724-57222743 | MS.gene61955:intron | 50.0% | |
TGGGGGGAACTCAATTGTAG+AGG | - | chr5.2:57222475-57222494 | MS.gene61955:intron | 50.0% | |
! | AGGCACACTCCATTTTGTCG+GGG | - | chr5.2:57223531-57223550 | MS.gene61955:intron | 50.0% |
! | CCGTGGTTTTCTCGTAGTGT+TGG | + | chr5.2:57222049-57222068 | None:intergenic | 50.0% |
! | CGGGTGTTCCAATGATAACG+TGG | - | chr5.2:57222507-57222526 | MS.gene61955:intron | 50.0% |
! | GAAGGATCACGCTGAGTTGA+AGG | + | chr5.2:57223629-57223648 | None:intergenic | 50.0% |
!! | GGGGAGGTCGACTTGTTTAT+AGG | + | chr5.2:57221583-57221602 | None:intergenic | 50.0% |
!! | GGTAAGGGATTGAGCATTGG+AGG | + | chr5.2:57221514-57221533 | None:intergenic | 50.0% |
!! | TGCTGATTCCGCGTTCTCAT+GGG | - | chr5.2:57221728-57221747 | MS.gene61955:intron | 50.0% |
!! | TTGCTGATTCCGCGTTCTCA+TGG | - | chr5.2:57221727-57221746 | MS.gene61955:intron | 50.0% |
AAACAAGTCGACCTCCCCGA+AGG | - | chr5.2:57221585-57221604 | MS.gene61955:intron | 55.0% | |
AAACCACGGGTCACAAGGCT+TGG | - | chr5.2:57222060-57222079 | MS.gene61955:intron | 55.0% | |
AGGGGAAGTCAACCGTGTGA+AGG | + | chr5.2:57221563-57221582 | None:intergenic | 55.0% | |
AGTGGTGATAGGGTCAGTGG+TGG | + | chr5.2:57221628-57221647 | None:intergenic | 55.0% | |
ATATTGAGCCACCCTGCGGT+AGG | - | chr5.2:57222434-57222453 | MS.gene61955:intron | 55.0% | |
ATTGTAGAGGCTGTTGGCGC+GGG | - | chr5.2:57222488-57222507 | MS.gene61955:intron | 55.0% | |
CCAAGTGGTGATAGGGTCAG+TGG | + | chr5.2:57221631-57221650 | None:intergenic | 55.0% | |
CCACTGACCCTATCACCACT+TGG | - | chr5.2:57221628-57221647 | MS.gene61955:intron | 55.0% | |
CCTGATATTGAGCCACCCTG+CGG | - | chr5.2:57222430-57222449 | MS.gene61955:intron | 55.0% | |
CGAGAAAACCACGGGTCACA+AGG | - | chr5.2:57222055-57222074 | MS.gene61955:intron | 55.0% | |
GCTCCTCAATGAAGCGGTTG+GGG | - | chr5.2:57221671-57221690 | MS.gene61955:intron | 55.0% | |
GGAAGTCAACCGTGTGAAGG+CGG | + | chr5.2:57221560-57221579 | None:intergenic | 55.0% | |
GGCATCATGTGTCCAGATGC+TGG | + | chr5.2:57221429-57221448 | None:intergenic | 55.0% | |
GGTCACAAGGCTTGGCATCT+TGG | - | chr5.2:57222068-57222087 | MS.gene61955:intron | 55.0% | |
TAGATTCAACGCCTTCGGGG+AGG | + | chr5.2:57221599-57221618 | None:intergenic | 55.0% | |
TATTGAGCCACCCTGCGGTA+GGG | - | chr5.2:57222435-57222454 | MS.gene61955:intron | 55.0% | |
TCAGAAATCCCCCTACCGCA+GGG | + | chr5.2:57222448-57222467 | None:intergenic | 55.0% | |
! | GGCGGCAGATGAGAGAGTTT+TGG | + | chr5.2:57221535-57221554 | None:intergenic | 55.0% |
! | GTGAGGAGATTGATGGACGG+TGG | - | chr5.2:57222674-57222693 | MS.gene61955:intron | 55.0% |
!! | GCGTGCGCAATAGAAGCATC+AGG | - | chr5.2:57222263-57222282 | MS.gene61955:intron | 55.0% |
AGTCAACCGTGTGAAGGCGG+AGG | + | chr5.2:57221557-57221576 | None:intergenic | 60.0% | |
ATTGAGCCACCCTGCGGTAG+GGG | - | chr5.2:57222436-57222455 | MS.gene61955:intron | 60.0% | |
CCGCAGGGTGGCTCAATATC+AGG | + | chr5.2:57222433-57222452 | None:intergenic | 60.0% | |
GGTGATAGGGTCAGTGGTGG+AGG | + | chr5.2:57221625-57221644 | None:intergenic | 60.0% | |
GTCAACCGTGTGAAGGCGGA+GGG | + | chr5.2:57221556-57221575 | None:intergenic | 60.0% | |
GTCAGAAATCCCCCTACCGC+AGG | + | chr5.2:57222449-57222468 | None:intergenic | 60.0% | |
GTGGCTGCCGAAGGGATTTG+AGG | - | chr5.2:57222355-57222374 | MS.gene61955:intron | 60.0% | |
! | ATGCCAAGCCTTGTGACCCG+TGG | + | chr5.2:57222066-57222085 | None:intergenic | 60.0% |
AACCGTGTGAAGGCGGAGGG+CGG | + | chr5.2:57221553-57221572 | None:intergenic | 65.0% | |
GAAATCCCCCTACCGCAGGG+TGG | + | chr5.2:57222445-57222464 | None:intergenic | 65.0% | |
GCGAGCACGAGTGCCTGAAC+TGG | - | chr5.2:57222156-57222175 | MS.gene61955:intron | 65.0% | |
TTGAGCCACCCTGCGGTAGG+GGG | - | chr5.2:57222437-57222456 | MS.gene61955:intron | 65.0% | |
TGCCGCCCTCCGCCTTCACA+CGG | - | chr5.2:57221548-57221567 | MS.gene61955:intron | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.2 | gene | 57221375 | 57224445 | 57221375 | ID=MS.gene61955 |
chr5.2 | mRNA | 57221375 | 57224445 | 57221375 | ID=MS.gene61955.t1;Parent=MS.gene61955 |
chr5.2 | exon | 57223669 | 57224445 | 57223669 | ID=MS.gene61955.t1.exon1;Parent=MS.gene61955.t1 |
chr5.2 | CDS | 57223669 | 57224445 | 57223669 | ID=cds.MS.gene61955.t1;Parent=MS.gene61955.t1 |
chr5.2 | exon | 57222536 | 57222617 | 57222536 | ID=MS.gene61955.t1.exon2;Parent=MS.gene61955.t1 |
chr5.2 | CDS | 57222536 | 57222617 | 57222536 | ID=cds.MS.gene61955.t1;Parent=MS.gene61955.t1 |
chr5.2 | exon | 57221592 | 57221645 | 57221592 | ID=MS.gene61955.t1.exon3;Parent=MS.gene61955.t1 |
chr5.2 | CDS | 57221592 | 57221645 | 57221592 | ID=cds.MS.gene61955.t1;Parent=MS.gene61955.t1 |
chr5.2 | exon | 57221375 | 57221499 | 57221375 | ID=MS.gene61955.t1.exon4;Parent=MS.gene61955.t1 |
chr5.2 | CDS | 57221375 | 57221499 | 57221375 | ID=cds.MS.gene61955.t1;Parent=MS.gene61955.t1 |
Gene Sequence |
Protein sequence |