AlfalfaGEDB | MS.gene61955

M. sativa cultivar XinJiangDaYe / MS.gene61955

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene61955.t1	XP_024639271.1	95.5	266	12	0	1	266	1	266	7.60E-145	523.5

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene61955.t1	Q2V6J9	34.5	261	160	5	10	264	11	266	1.7e-36	154.8

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene61955.t1	G7K602	95.5	266	12	0	1	266	1	266	5.5e-145	523.5

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049828	MS.gene61955	0.801926	7.15E-49	-1.69E-46
MS.gene049907	MS.gene61955	0.915267	7.21E-85	-1.69E-46
MS.gene050520	MS.gene61955	0.878787	2.12E-69	-1.69E-46
MS.gene051255	MS.gene61955	0.857551	1.51E-62	-1.69E-46
MS.gene053813	MS.gene61955	0.856912	2.33E-62	-1.69E-46
MS.gene05492	MS.gene61955	0.823835	1.12E-53	-1.69E-46
MS.gene055412	MS.gene61955	0.808957	2.40E-50	-1.69E-46
MS.gene055647	MS.gene61955	0.802716	4.92E-49	-1.69E-46
MS.gene056422	MS.gene61955	0.804756	1.85E-49	-1.69E-46
MS.gene056942	MS.gene61955	0.803157	3.99E-49	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene61955.t1	MTR_5g067170	94.465	271	14	1	1	270	1	271	0.0	513
MS.gene61955.t1	MTR_2g034990	74.721	269	64	2	1	266	1	268	5.28e-147	424
MS.gene61955.t1	MTR_5g029800	76.692	266	60	2	1	266	1	264	2.96e-141	409
MS.gene61955.t1	MTR_2g035020	69.888	269	77	2	1	266	1	268	3.58e-132	386
MS.gene61955.t1	MTR_7g012120	68.030	269	79	4	1	266	6	270	1.06e-120	357
MS.gene61955.t1	MTR_4g117960	56.393	305	126	4	1	302	1	301	2.73e-115	343
MS.gene61955.t1	MTR_4g117980	59.480	269	105	2	1	266	1	268	2.17e-108	325
MS.gene61955.t1	MTR_6g035185	54.902	306	131	4	1	302	1	303	5.93e-107	322
MS.gene61955.t1	MTR_6g035265	55.446	303	125	5	1	302	1	294	6.13e-105	316
MS.gene61955.t1	MTR_8g032950	55.556	288	116	5	2	281	3	286	3.81e-92	284

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene61955.t1	AT2G36790	32.441	299	177	11	9	289	9	300	1.29e-35	135
MS.gene61955.t1	AT4G34131	30.370	270	164	6	8	258	7	271	1.24e-34	132
MS.gene61955.t1	AT2G36770	32.323	297	174	10	12	289	13	301	9.94e-34	130
MS.gene61955.t1	AT2G36800	32.095	296	177	11	12	289	11	300	2.59e-32	126
MS.gene61955.t1	AT2G36750	32.441	299	182	9	5	289	4	296	6.60e-32	125
MS.gene61955.t1	AT2G15480	27.338	278	170	7	5	259	4	272	3.68e-31	123
MS.gene61955.t1	AT2G15480	27.338	278	170	7	5	259	4	272	3.94e-31	123
MS.gene61955.t1	AT2G15490	29.520	271	155	7	14	259	10	269	4.44e-31	122
MS.gene61955.t1	AT2G36760	30.218	321	188	13	12	310	13	319	4.66e-31	122
MS.gene61955.t1	AT2G15490	29.520	271	155	7	14	259	10	269	4.85e-31	122

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Find 84 sgRNAs with CRISPR-Local

Find 212 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAAGTCGACCTCCCCGA+AGG	0.612136	5.2:-57224213	MS.gene61955:CDS
AAACCACGGGTCACAAGGCT+TGG	0.486946	5.2:-57223738	MS.gene61955:CDS
AAAGTTGCTATATCACAAAG+AGG	0.603748	5.2:+57224351	None:intergenic
AAATACGGATTGAGAAACTG+TGG	0.681021	5.2:+57221463	None:intergenic
AACATGCTGAGAACCTTTGG+TGG	0.602305	5.2:+57223859	None:intergenic
AACCGTGTGAAGGCGGAGGG+CGG	0.573153	5.2:+57224248	None:intergenic
AAGCAAGGCTAAATAAAGTT+TGG	0.379369	5.2:+57221423	None:intergenic
AAGGTTCTCAGCATGTTCAT+AGG	0.529589	5.2:-57223853	MS.gene61955:CDS
AAGGTTCTTGGTTCTGTTTC+AGG	0.167910	5.2:-57222550	MS.gene61955:CDS
AAGTAAATTATTTGTTCGAA+GGG	0.467021	5.2:+57223966	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGTTGCTATATCACAAAG+AGG	+	chr5.2:57221450-57221469	None:intergenic	30.0%
AAGAACTTAGAACTTTCACT+TGG	-	chr5.2:57223690-57223709	MS.gene61955:CDS	30.0%
AAGAAGGGTTTCATAATTAG+GGG	-	chr5.2:57222392-57222411	MS.gene61955:intron	30.0%
AAGCAAGGCTAAATAAAGTT+TGG	+	chr5.2:57224378-57224397	None:intergenic	30.0%
AAGCATTAATGCTATGGATT+TGG	-	chr5.2:57222908-57222927	MS.gene61955:intron	30.0%
AGCAGTATTATGCAAATCAA+AGG	-	chr5.2:57223145-57223164	MS.gene61955:intron	30.0%
ATCCCGAATTTAACATTCAA+TGG	-	chr5.2:57221777-57221796	MS.gene61955:intron	30.0%
CAAACCACATGATTAATCAA+AGG	-	chr5.2:57222829-57222848	MS.gene61955:intron	30.0%
CACATGGTTTAGTAACAAAA+TGG	+	chr5.2:57224117-57224136	None:intergenic	30.0%
CCAAGAAAGTAGTAAATTGA+AGG	+	chr5.2:57223417-57223436	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.2	gene	57221375	57224445	57221375	ID=MS.gene61955
chr5.2	mRNA	57221375	57224445	57221375	ID=MS.gene61955.t1;Parent=MS.gene61955
chr5.2	exon	57223669	57224445	57223669	ID=MS.gene61955.t1.exon1;Parent=MS.gene61955.t1
chr5.2	CDS	57223669	57224445	57223669	ID=cds.MS.gene61955.t1;Parent=MS.gene61955.t1
chr5.2	exon	57222536	57222617	57222536	ID=MS.gene61955.t1.exon2;Parent=MS.gene61955.t1
chr5.2	CDS	57222536	57222617	57222536	ID=cds.MS.gene61955.t1;Parent=MS.gene61955.t1
chr5.2	exon	57221592	57221645	57221592	ID=MS.gene61955.t1.exon3;Parent=MS.gene61955.t1
chr5.2	CDS	57221592	57221645	57221592	ID=cds.MS.gene61955.t1;Parent=MS.gene61955.t1
chr5.2	exon	57221375	57221499	57221375	ID=MS.gene61955.t1.exon4;Parent=MS.gene61955.t1
chr5.2	CDS	57221375	57221499	57221375	ID=cds.MS.gene61955.t1;Parent=MS.gene61955.t1

Gene Sequence

>MS.gene61955

ATGAATGGTGTTGAAGTTGAACGACCATTGAAACTTCACTTCATTCCGTATCCAGCATCTGGACACATGATGCCTCTTTGTGATATAGCAACTTTGTTTGCATCACGTGGCCAACATGTCACAATCATCACTACTCCCTCCAATGCTCAATCCCTTACCAAAACTCTCTCATCTGCCGCCCTCCGCCTTCACACGGTTGACTTCCCCTATAAACAAGTCGACCTCCCCGAAGGCGTTGAATCTATGACCTCCACCACTGACCCTATCACCACTTGGAAGATTCATAATGGCGCAATGCTCCTCAATGAAGCGGTTGGGGATTTCGTTGAGAAGAATCCACCGGATTGTATCATTGCTGATTCCGCGTTCTCATGGGCTAATGACTTGGCCCACAAGCTTCAAATCCCGAATTTAACATTCAATGGATCGTCTCTTTTTGCTGTCTCGATCTTTCATTCCCTTCGAACAAATAATTTACTTCATACAGATGCTGATGATGATTCAGATTCAAGTTCCTATGTCGTTCCAAATCTTCATCATGATAATATCACCTTGTGTAGTAAACCACCAAAGGTTCTCAGCATGTTCATAGGAATGATGCTTGACACAGTGCTTAAAAGTACAGGCTATATCATCAACAATTTTGTTGAACTTGATGGAGAAGAGTGTGTCCAACACTACGAGAAAACCACGGGTCACAAGGCTTGGCATCTTGGTCCAACTTCCTTTATTCGTAAAACCGTTCAAGAGAAAGCAGAGAAGGGAAACGAGAGTGATGTGAGCGAGCACGAGTGCCTGAACTGGCTCAAATCACAACGAGTTAACTCAGTTGTGTACATATGTTTTGGAAGCATAAACCATTTCTCTGATAAACAACTATATGAGATTGCGTGCGCAATAGAAGCATCAGGTCACCCATTCGTATGGGTTGTTCCTGAGAAGAAAGGGAAAGAAGATGAGATCGAAGAAGAGAAAGAAAAGTGGCTGCCGAAGGGATTTGAGGAGAGAAACATTGGAAAGAAGGGTTTCATAATTAGGGGTTGGGCCCCACAAGTCCTGATATTGAGCCACCCTGCGGTAGGGGGATTTCTGACACATTGTGGGGGGAACTCAATTGTAGAGGCTGTTGGCGCGGGTGTTCCAATGATAACGTGGCCTTGTCATGCAGATCACTTCAGCAATGAGAAATTGATAACAACAGTCCGAAGAATTGGAGTGGAAGTAGGTGTAACGGAATGGTGTACAAATGGTAACGGGGAGAGAAAGAAGTTGGTGAGCAGAGATAACATAGAGAAGGCTGTGAGGAGATTGATGGACGGTGGTGATGAAGCTGAAAATATGAGACAACGTGCTCGAGAGTTAGGAGAGAAGGCTACACGAGCTATTAAAGAAGGTGGTTCCTCTCATAATAATTTGTTAGCTTTGATCGACGAACTTAAAAGATTGAGAGACTGCAAACCACATGATTAATCAAAGGAATATGGTATAAGTTTTTAGAACTTATAGTAATAACGTCCTTGTTTCGTCAAGCAGAAGCATTAATGCTATGGATTTGGTAGATGAATTTCTATTGAATACTAGCATAAAAATGCTTTGCTGTTTTCAGGATTTCGGTCGATGATTTTGTTTTACTTATCATTGCATATTTCAATTTTCACTGTGGTACTACGTTGAAGCAGTAATAAATGTATTTTCTTTGTGAAAGAAAATGTATTTTATATTTTATTTTATTTTATTTTATTCTGTAACATTAGTAACTATGTTGAAGCAAGCAGTATTATGCAAATCAAAGGTTACTTGATGTCCATAATGCTCTTTTTACTTGTAGACCTCAATGAATAAATCTATGTGGTACTACTCTTTATCTGGTGTCAAGGTTCTTGGTTCTGTTTCAGGTTTAACTCCAATTTGTAAGTATCATAAGTCCTTCTATATGGTCTCAAACAATCCCATATACCATAATATTCAAAGTTGTCATCAACCTGGATCTCTTTAGGATAAAATCAATCCTCAAATGATTACTTCATTTTTAGTTTTGGCCTTCAATTTACTACTTTCTTGGAATATGTCGATAATATTGTTTTGGCTCATGACGATCATTCTAAAACTTAACTTGTTAAGTCATGTCTGGATAAGAATTTCATAATCATAGATTTAGGCACACTCCATTTTGTCGGGGTCAAACTGCTTAATCAGCGCAAATATACTATTGCGTTCCTTGAAGAAAGTGGTCAGCTAGCTAGGCGTGAAACCTTCAACTCAGCGTGATCCTTCTTTGAAGTTGTATAATATCTATGAAACTTCTTCACCTTTGTAAGAACTTAGAACTTTCACTTGGTTCTCGCACACACGCTCACTTGTATTTGATTCTCTATATCCTTATTAGAGAAGAAGATAAAAGAGAAAATGATTTTGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGAGTATTGCTCAATAAAAGGCTAACAAACTGAAAAACTAACTAACTGTCAAAAGCAGAAAGTTTTCAACTCTATCTACTCTTACTTGTGCTGCAAGTAATTTATTGTATTGACTAACTTGAATTAACTCTCAACAACTTTATCATGATAAATTAGCTTACTGCAAGCTAATTGGCTTATTGTTGTATTGTACTTGAGCACAACAAGGACAAATGTAGTCTATGTTGTGCAGAAACTCCATTTTGTTACTAAACCATGTGCATTACCAACCTGTTACTAAAGTACTTCACTACCTCAGGTTCTCTAGTCAAAGGCTTGCTGTTTCCTATCTCATCTTCACTTCAGCTCTTAGGTTTTGCTTATTCTGATTGAGCCACCAGTCTCGCTTCTAGAAAATCCATAGCAAGTTATTGTTTTAGTCTTTGTTGTTCATTGATATTCTAGAAATTGAAAAACAACCACAGTTTCTCAATCCGTATTTTATGTTGGACTTGGATACCAAACTTTATTTAGCCTTGCTTGTTGATATCAGTAGCTCAGCTGTTGTTATCTTTCAGGAAAACGACTAA

Protein sequence

>MS.gene61955.t1

MNGVEVERPLKLHFIPYPASGHMMPLCDIATLFASRGQHVTIITTPSNAQSLTKTLSSAALRLHTVDFPYKQVDLPEGVESMTSTTDPITTWKIHNGAMLLNEAVGDFVEKNPPDCIIADSAFSWANDLAHKLQIPNLTFNGSSLFAVSIFHSLRTNNLLHTDADDDSDSSSYVVPNLHHDNITLCSKPPKVLSMFIGMMLDTVLKSTGYIINNFVELDGEECVQHYEKTTGHKAWHLGPTSFIRKTVQEKAEKGNESDTSMNKSMWYYSLSGVKVLGSVSGLTPICSLVKGLLFPISSSLQLLEIEKQPQFLNPYFMLDLDTKLYLALLVDISSSAVVIFQEND