Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62602.t1 | XP_003622292.1 | 98.9 | 265 | 3 | 0 | 1 | 265 | 8 | 272 | 1.10E-151 | 546.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62602.t1 | Q6DEY3 | 47.5 | 263 | 125 | 6 | 1 | 252 | 22 | 282 | 2.2e-63 | 244.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62602.t1 | Q2HUX9 | 98.9 | 265 | 3 | 0 | 1 | 265 | 8 | 272 | 8.3e-152 | 546.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049695 | MS.gene62602 | 0.808335 | 3.26E-50 | -1.69E-46 |
| MS.gene050020 | MS.gene62602 | 0.823379 | 1.43E-53 | -1.69E-46 |
| MS.gene050560 | MS.gene62602 | 0.802687 | 4.98E-49 | -1.69E-46 |
| MS.gene050807 | MS.gene62602 | 0.804234 | 2.38E-49 | -1.69E-46 |
| MS.gene055303 | MS.gene62602 | 0.814605 | 1.42E-51 | -1.69E-46 |
| MS.gene055357 | MS.gene62602 | 0.818843 | 1.59E-52 | -1.69E-46 |
| MS.gene055358 | MS.gene62602 | 0.806067 | 9.85E-50 | -1.69E-46 |
| MS.gene055804 | MS.gene62602 | 0.801061 | 1.08E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene62602 | MS.gene78717 | PPI |
| MS.gene44751 | MS.gene62602 | PPI |
| MS.gene022013 | MS.gene62602 | PPI |
| MS.gene29080 | MS.gene62602 | PPI |
| MS.gene62602 | MS.gene76004 | PPI |
| MS.gene70715 | MS.gene62602 | PPI |
| MS.gene62602 | MS.gene052632 | PPI |
| MS.gene62602 | MS.gene022408 | PPI |
| MS.gene61996 | MS.gene62602 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62602.t1 | MTR_7g032640 | 98.898 | 363 | 4 | 0 | 1 | 363 | 8 | 370 | 0.0 | 745 |
| MS.gene62602.t1 | MTR_3g075410 | 75.806 | 372 | 80 | 2 | 1 | 362 | 8 | 379 | 0.0 | 589 |
| MS.gene62602.t1 | MTR_7g017430 | 64.754 | 366 | 105 | 2 | 1 | 357 | 8 | 358 | 4.49e-172 | 484 |
| MS.gene62602.t1 | MTR_6g018930 | 56.510 | 361 | 112 | 4 | 1 | 331 | 8 | 353 | 1.61e-143 | 411 |
| MS.gene62602.t1 | MTR_8g037335 | 62.030 | 266 | 96 | 2 | 1 | 261 | 8 | 273 | 8.25e-118 | 345 |
| MS.gene62602.t1 | MTR_5g029210 | 62.030 | 266 | 96 | 2 | 1 | 261 | 8 | 273 | 7.26e-116 | 342 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62602.t1 | AT5G14390 | 75.741 | 371 | 71 | 6 | 1 | 362 | 8 | 368 | 0.0 | 565 |
| MS.gene62602.t1 | AT3G01690 | 76.309 | 363 | 75 | 4 | 1 | 362 | 8 | 360 | 0.0 | 559 |
| MS.gene62602.t1 | AT4G24760 | 71.233 | 365 | 93 | 6 | 1 | 362 | 8 | 363 | 0.0 | 526 |
| MS.gene62602.t1 | AT3G30380 | 63.462 | 364 | 116 | 5 | 1 | 360 | 8 | 358 | 1.88e-166 | 470 |
| MS.gene62602.t1 | AT3G30380 | 64.167 | 360 | 112 | 5 | 1 | 356 | 8 | 354 | 6.30e-166 | 469 |
| MS.gene62602.t1 | AT5G38220 | 61.442 | 319 | 109 | 3 | 1 | 307 | 8 | 324 | 2.74e-146 | 417 |
| MS.gene62602.t1 | AT5G38220 | 61.442 | 319 | 109 | 3 | 1 | 307 | 8 | 324 | 2.74e-146 | 417 |
| MS.gene62602.t1 | AT1G66900 | 67.939 | 262 | 83 | 1 | 1 | 261 | 8 | 269 | 1.56e-135 | 387 |
| MS.gene62602.t1 | AT4G31020 | 67.188 | 256 | 84 | 0 | 1 | 256 | 8 | 263 | 1.34e-130 | 375 |
| MS.gene62602.t1 | AT4G31020 | 67.188 | 256 | 84 | 0 | 1 | 256 | 8 | 263 | 1.34e-130 | 375 |
| MS.gene62602.t1 | AT1G13610 | 52.542 | 354 | 138 | 6 | 1 | 335 | 8 | 350 | 1.57e-127 | 370 |
| MS.gene62602.t1 | AT2G24320 | 62.109 | 256 | 96 | 1 | 1 | 256 | 8 | 262 | 4.99e-124 | 359 |
| MS.gene62602.t1 | AT2G24320 | 62.109 | 256 | 96 | 1 | 1 | 256 | 1 | 255 | 7.15e-124 | 358 |
| MS.gene62602.t1 | AT1G32190 | 56.506 | 269 | 108 | 1 | 1 | 260 | 8 | 276 | 3.33e-109 | 326 |
| MS.gene62602.t1 | AT5G38220 | 68.159 | 201 | 62 | 1 | 1 | 201 | 8 | 206 | 3.32e-102 | 301 |
| MS.gene62602.t1 | AT1G13610 | 50.617 | 243 | 95 | 3 | 108 | 335 | 18 | 250 | 2.42e-77 | 239 |
| MS.gene62602.t1 | AT1G32190 | 60.390 | 154 | 61 | 0 | 107 | 260 | 38 | 191 | 6.54e-64 | 207 |
Find 69 sgRNAs with CRISPR-Local
Find 163 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATGGCAACGCTGCTGATC+TGG | 0.206070 | 7.3:+67904955 | MS.gene62602:CDS |
| TGTTGCAGGTATGATTATTC+TGG | 0.208864 | 7.3:+67906506 | MS.gene62602:intron |
| TTGCACAGTCCAATACTTTC+TGG | 0.217252 | 7.3:+67906809 | MS.gene62602:CDS |
| GTCCAATACTTTCTGGCTTA+AGG | 0.292115 | 7.3:+67906816 | MS.gene62602:CDS |
| AACCAGTACGAACGCTTTAC+TGG | 0.299933 | 7.3:-67906848 | None:intergenic |
| CAAGAAGATATAATCCTTTA+CGG | 0.308045 | 7.3:+67906719 | MS.gene62602:CDS |
| GTTGATCATCAATTAGAAAA+AGG | 0.324209 | 7.3:+67907997 | MS.gene62602:CDS |
| TTGACCGACTCGACAGAATA+AGG | 0.327499 | 7.3:+67908031 | MS.gene62602:CDS |
| TCCAATACTTTCTGGCTTAA+GGG | 0.333040 | 7.3:+67906817 | MS.gene62602:CDS |
| GTTGCAGGTATGATTATTCT+GGG | 0.375051 | 7.3:+67906507 | MS.gene62602:intron |
| AAATGTCTCGAAGAAAGTTT+TGG | 0.379705 | 7.3:+67906689 | MS.gene62602:CDS |
| GTACTGGTTTGACATATATA+AGG | 0.380014 | 7.3:+67906862 | MS.gene62602:CDS |
| AGTTTGTATGATGGTGGGTT+TGG | 0.393247 | 7.3:-67904782 | None:intergenic |
| CTAATAAAAGATGATTTAAC+AGG | 0.398985 | 7.3:+67904803 | MS.gene62602:CDS |
| GTTCCCACGGTAAGCAACTC+TGG | 0.399048 | 7.3:+67907599 | MS.gene62602:CDS |
| GGTTTGTCTGTGCTCTTCCT+TGG | 0.400736 | 7.3:-67907850 | None:intergenic |
| TTTATTAGTTTGTATGATGG+TGG | 0.402269 | 7.3:-67904788 | None:intergenic |
| TGTTGGAAGTGGCCCGACTT+TGG | 0.409126 | 7.3:+67906748 | MS.gene62602:CDS |
| AGCTCTTTCCCGAGTACATA+AGG | 0.413590 | 7.3:+67907683 | MS.gene62602:CDS |
| CTTCAGATGCCTTATGTACT+CGG | 0.422463 | 7.3:-67907692 | None:intergenic |
| TTATTAGTTTGTATGATGGT+GGG | 0.433824 | 7.3:-67904787 | None:intergenic |
| AAAACATCTGTACTCTTTCG+AGG | 0.434475 | 7.3:-67907790 | None:intergenic |
| TTGTATGATGGTGGGTTTGG+TGG | 0.435014 | 7.3:-67904779 | None:intergenic |
| CCACTTGCGTGTTAATCTCA+TGG | 0.442917 | 7.3:+67905012 | MS.gene62602:CDS |
| CATGGCAACGCTGCTGATCT+GGG | 0.446287 | 7.3:+67904956 | MS.gene62602:CDS |
| TCAACTCTTCTTTACTCTCA+TGG | 0.455337 | 7.3:+67904938 | MS.gene62602:CDS |
| CTTACATGAACTATGAGAAC+TGG | 0.461132 | 7.3:-67906998 | None:intergenic |
| TCTTTCGAGGCTGCTCAAAC+TGG | 0.480744 | 7.3:-67907777 | None:intergenic |
| CACTTGCGTGTTAATCTCAT+GGG | 0.483122 | 7.3:+67905013 | MS.gene62602:CDS |
| TCTGGGTACGGACAGTCGTC+AGG | 0.495232 | 7.3:+67906524 | MS.gene62602:CDS |
| CAAACTGGTCTGTACTCCTT+CGG | 0.496493 | 7.3:-67907762 | None:intergenic |
| ATCCTTTACGGACAATCTGT+TGG | 0.497874 | 7.3:+67906731 | MS.gene62602:CDS |
| ACCCTTAAGCCAGAAAGTAT+TGG | 0.501968 | 7.3:-67906818 | None:intergenic |
| TACGGACAATCTGTTGGAAG+TGG | 0.524349 | 7.3:+67906737 | MS.gene62602:CDS |
| TTCAGATGCCTTATGTACTC+GGG | 0.527427 | 7.3:-67907691 | None:intergenic |
| CGACTTTGGATCTTGCAGCT+AGG | 0.528104 | 7.3:+67906762 | MS.gene62602:CDS |
| GAATATGTATTCTGCTCACT+TGG | 0.534786 | 7.3:-67906647 | None:intergenic |
| TAGCTGCAAGATCCAAAGTC+GGG | 0.536628 | 7.3:-67906760 | None:intergenic |
| AGGTATGATTATTCTGGGTA+CGG | 0.542672 | 7.3:+67906512 | MS.gene62602:intron |
| AGAAGAGTTGAAGTAGCCAT+TGG | 0.544121 | 7.3:-67904926 | None:intergenic |
| TTGATCATAAAGAGAGATCT+CGG | 0.544423 | 7.3:+67907938 | MS.gene62602:CDS |
| ATCCAGTAAAGCGTTCGTAC+TGG | 0.544988 | 7.3:+67906846 | MS.gene62602:CDS |
| AAAACAACAGCTCGTAATTG+AGG | 0.546917 | 7.3:-67906788 | None:intergenic |
| TTCCAACAGATTGTCCGTAA+AGG | 0.559246 | 7.3:-67906733 | None:intergenic |
| TACGAACCACTGTGGCTCAA+AGG | 0.565306 | 7.3:+67907640 | MS.gene62602:CDS |
| TGTTTATGTTCGTCATCCAA+TGG | 0.571569 | 7.3:+67904910 | MS.gene62602:CDS |
| TTCCCAGAGTTGCTTACCGT+GGG | 0.572357 | 7.3:-67907602 | None:intergenic |
| GAGCACAGACAAACCAGAGA+AGG | 0.574334 | 7.3:+67907858 | MS.gene62602:CDS |
| AACTCGTCTTCTAGTAATGG+TGG | 0.577907 | 7.3:+67907886 | MS.gene62602:CDS |
| TTCCCACGGTAAGCAACTCT+GGG | 0.578420 | 7.3:+67907600 | MS.gene62602:CDS |
| TAGTAATGGTGGTGATATGT+TGG | 0.589614 | 7.3:+67907897 | MS.gene62602:CDS |
| ATGAAACTTTCGACGCGTCG+AGG | 0.590434 | 7.3:+67904872 | MS.gene62602:CDS |
| GAAGTTGTAGATTGTTCCCA+CGG | 0.597143 | 7.3:+67907586 | MS.gene62602:CDS |
| CCATGAGATTAACACGCAAG+TGG | 0.613463 | 7.3:-67905012 | None:intergenic |
| CGCAAAGATACAGTTTCCGA+AGG | 0.613831 | 7.3:+67907746 | MS.gene62602:CDS |
| CGGAAACTGTATCTTTGCGA+CGG | 0.615327 | 7.3:-67907742 | None:intergenic |
| CTAGCTGCAAGATCCAAAGT+CGG | 0.626114 | 7.3:-67906761 | None:intergenic |
| GTTCCCAGAGTTGCTTACCG+TGG | 0.632356 | 7.3:-67907603 | None:intergenic |
| GTACGGACAGTCGTCAGGAA+AGG | 0.635204 | 7.3:+67906529 | MS.gene62602:CDS |
| CAGTCCTTATTCTGTCGAGT+CGG | 0.637149 | 7.3:-67908035 | None:intergenic |
| CTGATCGTAGAGAAAAGCCA+AGG | 0.642341 | 7.3:+67907833 | MS.gene62602:CDS |
| CGACTCGACAGAATAAGGAC+TGG | 0.649791 | 7.3:+67908036 | MS.gene62602:CDS |
| AGAACTGGACAATTAACTAG+TGG | 0.652581 | 7.3:-67906983 | None:intergenic |
| GAATACATATTCAGATATCG+AGG | 0.657030 | 7.3:+67906658 | MS.gene62602:CDS |
| TTACCTCCTTTGAGCCACAG+TGG | 0.679149 | 7.3:-67907646 | None:intergenic |
| GAACCACTGTGGCTCAAAGG+AGG | 0.681241 | 7.3:+67907643 | MS.gene62602:CDS |
| ACTTGCGTGTTAATCTCATG+GGG | 0.715195 | 7.3:+67905014 | MS.gene62602:CDS |
| GAAAGAGCTCTAAATCGCAG+TGG | 0.717582 | 7.3:-67907669 | None:intergenic |
| AAGAGAAATACGAACCACTG+TGG | 0.749682 | 7.3:+67907632 | MS.gene62602:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATAAAAATAACTTATACAT+AGG | - | chr7.3:67905614-67905633 | None:intergenic | 10.0% |
| !!! | AACTAAAAAATGTTTTTTTT+TGG | + | chr7.3:67906031-67906050 | MS.gene62602:intron | 10.0% |
| !!! | ACTAAAAAATGTTTTTTTTT+GGG | + | chr7.3:67906032-67906051 | MS.gene62602:intron | 10.0% |
| !!! | TATATAATATTCTTCTTTTT+TGG | + | chr7.3:67905191-67905210 | MS.gene62602:intron | 10.0% |
| !!! | TATGTAAAATTTTCTTTTTT+TGG | + | chr7.3:67905137-67905156 | MS.gene62602:intron | 10.0% |
| !! | TGAATTTAGTCAAAAAAATA+CGG | - | chr7.3:67907298-67907317 | None:intergenic | 15.0% |
| !!! | AATTTTCTTTTTTTGGTTTT+TGG | + | chr7.3:67905144-67905163 | MS.gene62602:intron | 15.0% |
| !!! | ATTTATTTTATGTTCTGTTA+TGG | + | chr7.3:67905419-67905438 | MS.gene62602:intron | 15.0% |
| !!! | TCATTTCATTTTGAATATTT+GGG | + | chr7.3:67907236-67907255 | MS.gene62602:intron | 15.0% |
| !!! | TTCATTTCATTTTGAATATT+TGG | + | chr7.3:67907235-67907254 | MS.gene62602:intron | 15.0% |
| !! | CAATACTTCATTACAAAAAT+TGG | - | chr7.3:67906086-67906105 | None:intergenic | 20.0% |
| !! | CATAAAATAAATAAGTCGTT+TGG | - | chr7.3:67905411-67905430 | None:intergenic | 20.0% |
| !! | CTAATAAAAGATGATTTAAC+AGG | + | chr7.3:67904803-67904822 | MS.gene62602:CDS | 20.0% |
| !! | TCATCTATCAAATATATGTA+TGG | - | chr7.3:67906604-67906623 | None:intergenic | 20.0% |
| !!! | GTTTGGAATTTGAAATTTAT+AGG | + | chr7.3:67905102-67905121 | MS.gene62602:intron | 20.0% |
| !!! | TAATGAAGTATTGAATTTGA+AGG | + | chr7.3:67906093-67906112 | MS.gene62602:intron | 20.0% |
| !!! | TATCTCTTTCAAGTATTTTT+TGG | + | chr7.3:67905053-67905072 | MS.gene62602:intron | 20.0% |
| !!! | TCTTTTATTAGTTTGTATGA+TGG | - | chr7.3:67904794-67904813 | None:intergenic | 20.0% |
| !!! | TGTCAATATTTTTGTTGTAA+CGG | + | chr7.3:67907517-67907536 | MS.gene62602:intron | 20.0% |
| !!! | TTGAAAATTTTGCTTCATTT+TGG | + | chr7.3:67905462-67905481 | MS.gene62602:intron | 20.0% |
| ! | AAAATCAATAGAAAGGAAAC+TGG | - | chr7.3:67907192-67907211 | None:intergenic | 25.0% |
| ! | AATGACATGAAAGATATAGT+TGG | - | chr7.3:67907549-67907568 | None:intergenic | 25.0% |
| ! | ATATTCTGCATATATGAACA+CGG | - | chr7.3:67906953-67906972 | None:intergenic | 25.0% |
| ! | ATCATCAATTAGAAAAAGGA+AGG | + | chr7.3:67908001-67908020 | MS.gene62602:CDS | 25.0% |
| ! | CAAACATGTTTATTATGCTA+TGG | + | chr7.3:67907028-67907047 | MS.gene62602:intron | 25.0% |
| ! | CAAGAAGATATAATCCTTTA+CGG | + | chr7.3:67906719-67906738 | MS.gene62602:CDS | 25.0% |
| ! | GTTGATCATCAATTAGAAAA+AGG | + | chr7.3:67907997-67908016 | MS.gene62602:CDS | 25.0% |
| ! | TCTCATTAGATTAAGGAATT+AGG | - | chr7.3:67906925-67906944 | None:intergenic | 25.0% |
| !! | ATATCTTTCATGTCATTTGT+AGG | + | chr7.3:67907552-67907571 | MS.gene62602:intron | 25.0% |
| !! | TATCTTTCATGTCATTTGTA+GGG | + | chr7.3:67907553-67907572 | MS.gene62602:intron | 25.0% |
| !!! | AAGTATTGAATTTGAAGGTA+TGG | + | chr7.3:67906098-67906117 | MS.gene62602:intron | 25.0% |
| !!! | TCATTTTGGTTTTTGGTTTT+TGG | + | chr7.3:67905476-67905495 | MS.gene62602:intron | 25.0% |
| !!! | TCCTTTCTATTGATTTTCTT+TGG | + | chr7.3:67907195-67907214 | MS.gene62602:intron | 25.0% |
| !!! | TGATTTGGAATTTTGAGAAA+TGG | + | chr7.3:67905544-67905563 | MS.gene62602:intron | 25.0% |
| !!! | TTATTAGTTTGTATGATGGT+GGG | - | chr7.3:67904790-67904809 | None:intergenic | 25.0% |
| !!! | TTTATTAGTTTGTATGATGG+TGG | - | chr7.3:67904791-67904810 | None:intergenic | 25.0% |
| !!! | TTTTGCTTCATTTTGGTTTT+TGG | + | chr7.3:67905469-67905488 | MS.gene62602:intron | 25.0% |
| !!! | TTTTTTGTTGTTGTGCTTTT+GGG | + | chr7.3:67905080-67905099 | MS.gene62602:intron | 25.0% |
| !!! | TTTTTTTGTTGTTGTGCTTT+TGG | + | chr7.3:67905079-67905098 | MS.gene62602:intron | 25.0% |
| AAAAACTCGTCTTCTAGTAA+TGG | + | chr7.3:67907883-67907902 | MS.gene62602:CDS | 30.0% | |
| ACCTGAACAAAACTAGAAAA+TGG | + | chr7.3:67905767-67905786 | MS.gene62602:intron | 30.0% | |
| AGAAGAGTCTAAAAAATGGT+AGG | - | chr7.3:67907393-67907412 | None:intergenic | 30.0% | |
| AGTCAAAAAAATACGGATCT+TGG | - | chr7.3:67907291-67907310 | None:intergenic | 30.0% | |
| CATTGTTTGAATTGTGTTGT+TGG | + | chr7.3:67906137-67906156 | MS.gene62602:intron | 30.0% | |
| CCTGAACAAAACTAGAAAAT+GGG | + | chr7.3:67905768-67905787 | MS.gene62602:intron | 30.0% | |
| CTGAACAAAACTAGAAAATG+GGG | + | chr7.3:67905769-67905788 | MS.gene62602:intron | 30.0% | |
| GAATACATATTCAGATATCG+AGG | + | chr7.3:67906658-67906677 | MS.gene62602:CDS | 30.0% | |
| GAGTTTATATACTGACAAAC+AGG | - | chr7.3:67905991-67906010 | None:intergenic | 30.0% | |
| GCCAAAGAAAATCAATAGAA+AGG | - | chr7.3:67907199-67907218 | None:intergenic | 30.0% | |
| GTGAAGAAGAGTCTAAAAAA+TGG | - | chr7.3:67907397-67907416 | None:intergenic | 30.0% | |
| GTGATAACTTGAACTTCAAA+TGG | - | chr7.3:67907489-67907508 | None:intergenic | 30.0% | |
| TATTCTGCATATATGAACAC+GGG | - | chr7.3:67906952-67906971 | None:intergenic | 30.0% | |
| TTCATTACAAAAATTGGACG+TGG | - | chr7.3:67906080-67906099 | None:intergenic | 30.0% | |
| TTGATCATAAAGAGAGATCT+CGG | + | chr7.3:67907938-67907957 | MS.gene62602:CDS | 30.0% | |
| ! | AAATGTCTCGAAGAAAGTTT+TGG | + | chr7.3:67906689-67906708 | MS.gene62602:CDS | 30.0% |
| ! | AATTGTGTTGTTGGATTTCA+TGG | + | chr7.3:67906146-67906165 | MS.gene62602:intron | 30.0% |
| ! | TACTGTGTTTTGTAAGTGAT+TGG | + | chr7.3:67905568-67905587 | MS.gene62602:intron | 30.0% |
| ! | TCATAATCTCAACGTTTTCA+CGG | - | chr7.3:67904856-67904875 | None:intergenic | 30.0% |
| ! | TTTTCATAAGCTAGCTATCA+TGG | + | chr7.3:67905287-67905306 | MS.gene62602:intron | 30.0% |
| ! | TTTTGCATAGACATAACTTC+TGG | + | chr7.3:67907074-67907093 | MS.gene62602:intron | 30.0% |
| !! | GTACTGGTTTGACATATATA+AGG | + | chr7.3:67906862-67906881 | MS.gene62602:CDS | 30.0% |
| !!! | TCTGACATATTTGTTTTGTC+TGG | + | chr7.3:67907113-67907132 | MS.gene62602:intron | 30.0% |
| !!! | TGGTATTGATGCTATTTTCA+AGG | + | chr7.3:67906172-67906191 | MS.gene62602:intron | 30.0% |
| !!! | TGGTTTTTGGTTTTTGGTTT+CGG | + | chr7.3:67905482-67905501 | MS.gene62602:intron | 30.0% |
| !!! | TTTTTTTCTTTTGACACCCT+TGG | + | chr7.3:67907165-67907184 | MS.gene62602:intron | 30.0% |
| AAAACAACAGCTCGTAATTG+AGG | - | chr7.3:67906791-67906810 | None:intergenic | 35.0% | |
| AAAACATCTGTACTCTTTCG+AGG | - | chr7.3:67907793-67907812 | None:intergenic | 35.0% | |
| AGAACTGGACAATTAACTAG+TGG | - | chr7.3:67906986-67907005 | None:intergenic | 35.0% | |
| AGGTATGATTATTCTGGGTA+CGG | + | chr7.3:67906512-67906531 | MS.gene62602:intron | 35.0% | |
| AGTGTTCTCATAAGCTATTG+TGG | + | chr7.3:67905878-67905897 | MS.gene62602:intron | 35.0% | |
| ATGTGACGTGAACATAAACT+TGG | - | chr7.3:67906293-67906312 | None:intergenic | 35.0% | |
| ATTGTTCTTGTAAGCTATCG+TGG | + | chr7.3:67905678-67905697 | MS.gene62602:intron | 35.0% | |
| CAAGTAGTGTAACAAAGGAT+AGG | - | chr7.3:67907419-67907438 | None:intergenic | 35.0% | |
| CTTACATGAACTATGAGAAC+TGG | - | chr7.3:67907001-67907020 | None:intergenic | 35.0% | |
| GAATATGTATTCTGCTCACT+TGG | - | chr7.3:67906650-67906669 | None:intergenic | 35.0% | |
| GCAAACAAGTAGTGTAACAA+AGG | - | chr7.3:67907424-67907443 | None:intergenic | 35.0% | |
| GCTAAGTTATACTTTGTTGC+AGG | + | chr7.3:67906492-67906511 | MS.gene62602:intron | 35.0% | |
| GTTGCAGGTATGATTATTCT+GGG | + | chr7.3:67906507-67906526 | MS.gene62602:intron | 35.0% | |
| GTTGTTGGATTTCATGGAAT+TGG | + | chr7.3:67906152-67906171 | MS.gene62602:intron | 35.0% | |
| TCAACTCTTCTTTACTCTCA+TGG | + | chr7.3:67904938-67904957 | MS.gene62602:CDS | 35.0% | |
| TGTTGCAGGTATGATTATTC+TGG | + | chr7.3:67906506-67906525 | MS.gene62602:intron | 35.0% | |
| TGTTTATGTTCGTCATCCAA+TGG | + | chr7.3:67904910-67904929 | MS.gene62602:CDS | 35.0% | |
| ! | CCAGAAATTTTCATCACGAA+GGG | - | chr7.3:67906380-67906399 | None:intergenic | 35.0% |
| ! | TAGTAATGGTGGTGATATGT+TGG | + | chr7.3:67907897-67907916 | MS.gene62602:CDS | 35.0% |
| ! | TCCAGAAATTTTCATCACGA+AGG | - | chr7.3:67906381-67906400 | None:intergenic | 35.0% |
| !! | TCCAATACTTTCTGGCTTAA+GGG | + | chr7.3:67906817-67906836 | MS.gene62602:CDS | 35.0% |
| !!! | CATTTCGCTTGTATCGATTT+TGG | - | chr7.3:67907459-67907478 | None:intergenic | 35.0% |
| !!! | CCCATTTTCTAGTTTTGTTC+AGG | - | chr7.3:67905771-67905790 | None:intergenic | 35.0% |
| !!! | GGTTTTTGGTTTTTGGTTTC+GGG | + | chr7.3:67905483-67905502 | MS.gene62602:intron | 35.0% |
| AACTCGTCTTCTAGTAATGG+TGG | + | chr7.3:67907886-67907905 | MS.gene62602:CDS | 40.0% | |
| AAGAGAAATACGAACCACTG+TGG | + | chr7.3:67907632-67907651 | MS.gene62602:CDS | 40.0% | |
| ACTTGCGTGTTAATCTCATG+GGG | + | chr7.3:67905014-67905033 | MS.gene62602:CDS | 40.0% | |
| AGAAGAGTTGAAGTAGCCAT+TGG | - | chr7.3:67904929-67904948 | None:intergenic | 40.0% | |
| AGTGCGAAATGAGGATTTGT+GGG | + | chr7.3:67905521-67905540 | MS.gene62602:intron | 40.0% | |
| ATAGAAAGGAAACTGGACCA+AGG | - | chr7.3:67907185-67907204 | None:intergenic | 40.0% | |
| ATATACTGACAAACAGGTGC+AGG | - | chr7.3:67905985-67906004 | None:intergenic | 40.0% | |
| ATCCTTTACGGACAATCTGT+TGG | + | chr7.3:67906731-67906750 | MS.gene62602:CDS | 40.0% | |
| ATGAGGATTTGTGGGTGATT+TGG | + | chr7.3:67905529-67905548 | MS.gene62602:intron | 40.0% | |
| CACATTAATAACCAGACGAG+AGG | + | chr7.3:67906308-67906327 | MS.gene62602:intron | 40.0% | |
| CACTTGCGTGTTAATCTCAT+GGG | + | chr7.3:67905013-67905032 | MS.gene62602:CDS | 40.0% | |
| CATGGTGAGTACAGAGTTTA+TGG | + | chr7.3:67905305-67905324 | MS.gene62602:intron | 40.0% | |
| CCCTTCGTGATGAAAATTTC+TGG | + | chr7.3:67906377-67906396 | MS.gene62602:intron | 40.0% | |
| CTTCAGATGCCTTATGTACT+CGG | - | chr7.3:67907695-67907714 | None:intergenic | 40.0% | |
| GAAGTTGTAGATTGTTCCCA+CGG | + | chr7.3:67907586-67907605 | MS.gene62602:CDS | 40.0% | |
| TAGAAAGGAAACTGGACCAA+GGG | - | chr7.3:67907184-67907203 | None:intergenic | 40.0% | |
| TGCATTGAGCTCAACTTCAA+AGG | + | chr7.3:67906444-67906463 | MS.gene62602:intron | 40.0% | |
| TTCAGATGCCTTATGTACTC+GGG | - | chr7.3:67907694-67907713 | None:intergenic | 40.0% | |
| TTCCAACAGATTGTCCGTAA+AGG | - | chr7.3:67906736-67906755 | None:intergenic | 40.0% | |
| TTGCACAGTCCAATACTTTC+TGG | + | chr7.3:67906809-67906828 | MS.gene62602:CDS | 40.0% | |
| TTGGACAGACGACAAAATTG+TGG | - | chr7.3:67906274-67906293 | None:intergenic | 40.0% | |
| TTTGCTTAGAGTGCGAAATG+AGG | + | chr7.3:67905512-67905531 | MS.gene62602:intron | 40.0% | |
| ! | ACCCTTAAGCCAGAAAGTAT+TGG | - | chr7.3:67906821-67906840 | None:intergenic | 40.0% |
| !! | AGTTTGTATGATGGTGGGTT+TGG | - | chr7.3:67904785-67904804 | None:intergenic | 40.0% |
| !! | GGGAGCATCTCATTAGATTA+AGG | - | chr7.3:67906932-67906951 | None:intergenic | 40.0% |
| !! | GTCCAATACTTTCTGGCTTA+AGG | + | chr7.3:67906816-67906835 | MS.gene62602:CDS | 40.0% |
| !!! | GACGAGTTTTTTACCTTCTC+TGG | - | chr7.3:67907874-67907893 | None:intergenic | 40.0% |
| !!! | TGTTGTTGTGCTTTTGGGTT+TGG | + | chr7.3:67905085-67905104 | MS.gene62602:intron | 40.0% |
| AAACAGGTGCAGGACTGTTT+GGG | - | chr7.3:67905975-67905994 | None:intergenic | 45.0% | |
| AACCAGTACGAACGCTTTAC+TGG | - | chr7.3:67906851-67906870 | None:intergenic | 45.0% | |
| AGCTCTTTCCCGAGTACATA+AGG | + | chr7.3:67907683-67907702 | MS.gene62602:CDS | 45.0% | |
| CAAAACGAGTGAGACTGCTT+GGG | - | chr7.3:67905360-67905379 | None:intergenic | 45.0% | |
| CAGTCCTTATTCTGTCGAGT+CGG | - | chr7.3:67908038-67908057 | None:intergenic | 45.0% | |
| CCACTTGCGTGTTAATCTCA+TGG | + | chr7.3:67905012-67905031 | MS.gene62602:CDS | 45.0% | |
| CCATGAGATTAACACGCAAG+TGG | - | chr7.3:67905015-67905034 | None:intergenic | 45.0% | |
| CGCAAAGATACAGTTTCCGA+AGG | + | chr7.3:67907746-67907765 | MS.gene62602:CDS | 45.0% | |
| CGGAAACTGTATCTTTGCGA+CGG | - | chr7.3:67907745-67907764 | None:intergenic | 45.0% | |
| CTAGCTGCAAGATCCAAAGT+CGG | - | chr7.3:67906764-67906783 | None:intergenic | 45.0% | |
| CTGATCGTAGAGAAAAGCCA+AGG | + | chr7.3:67907833-67907852 | MS.gene62602:CDS | 45.0% | |
| GAGTGCGAAATGAGGATTTG+TGG | + | chr7.3:67905520-67905539 | MS.gene62602:intron | 45.0% | |
| GTTCTTGTAAGCTATCGTGG+AGG | + | chr7.3:67905681-67905700 | MS.gene62602:intron | 45.0% | |
| TACGGACAATCTGTTGGAAG+TGG | + | chr7.3:67906737-67906756 | MS.gene62602:CDS | 45.0% | |
| TAGCTGCAAGATCCAAAGTC+GGG | - | chr7.3:67906763-67906782 | None:intergenic | 45.0% | |
| ! | ACGTTTTCACGGTGAGGAAA+TGG | - | chr7.3:67904845-67904864 | None:intergenic | 45.0% |
| ! | ATCCAGTAAAGCGTTCGTAC+TGG | + | chr7.3:67906846-67906865 | MS.gene62602:CDS | 45.0% |
| ! | ATCTCAACGTTTTCACGGTG+AGG | - | chr7.3:67904851-67904870 | None:intergenic | 45.0% |
| ! | CAAACTGGTCTGTACTCCTT+CGG | - | chr7.3:67907765-67907784 | None:intergenic | 45.0% |
| ! | TGTGGAGACTGAAGAGCTTT+TGG | + | chr7.3:67905896-67905915 | MS.gene62602:intron | 45.0% |
| !! | GAAAGAGCTCTAAATCGCAG+TGG | - | chr7.3:67907672-67907691 | None:intergenic | 45.0% |
| !! | TTGACCGACTCGACAGAATA+AGG | + | chr7.3:67908031-67908050 | MS.gene62602:CDS | 45.0% |
| !! | TTGTATGATGGTGGGTTTGG+TGG | - | chr7.3:67904782-67904801 | None:intergenic | 45.0% |
| AGCAAGTTACTCCTCTCGTC+TGG | - | chr7.3:67906322-67906341 | None:intergenic | 50.0% | |
| ATGAAACTTTCGACGCGTCG+AGG | + | chr7.3:67904872-67904891 | MS.gene62602:CDS | 50.0% | |
| CAAACAGGTGCAGGACTGTT+TGG | - | chr7.3:67905976-67905995 | None:intergenic | 50.0% | |
| CCAAAACGAGTGAGACTGCT+TGG | - | chr7.3:67905361-67905380 | None:intergenic | 50.0% | |
| CGACTCGACAGAATAAGGAC+TGG | + | chr7.3:67908036-67908055 | MS.gene62602:CDS | 50.0% | |
| CGACTTTGGATCTTGCAGCT+AGG | + | chr7.3:67906762-67906781 | MS.gene62602:CDS | 50.0% | |
| GAGCACAGACAAACCAGAGA+AGG | + | chr7.3:67907858-67907877 | MS.gene62602:CDS | 50.0% | |
| GGTTTGTCTGTGCTCTTCCT+TGG | - | chr7.3:67907853-67907872 | None:intergenic | 50.0% | |
| TACGAACCACTGTGGCTCAA+AGG | + | chr7.3:67907640-67907659 | MS.gene62602:CDS | 50.0% | |
| TCTTTCGAGGCTGCTCAAAC+TGG | - | chr7.3:67907780-67907799 | None:intergenic | 50.0% | |
| TTACCTCCTTTGAGCCACAG+TGG | - | chr7.3:67907649-67907668 | None:intergenic | 50.0% | |
| TTCCCACGGTAAGCAACTCT+GGG | + | chr7.3:67907600-67907619 | MS.gene62602:CDS | 50.0% | |
| TTCCCAGAGTTGCTTACCGT+GGG | - | chr7.3:67907605-67907624 | None:intergenic | 50.0% | |
| ! | CCAAGCAGTCTCACTCGTTT+TGG | + | chr7.3:67905358-67905377 | MS.gene62602:intron | 50.0% |
| !! | GCAGTCTCACTCGTTTTGGT+CGG | + | chr7.3:67905362-67905381 | MS.gene62602:intron | 50.0% |
| CATGGCAACGCTGCTGATCT+GGG | + | chr7.3:67904956-67904975 | MS.gene62602:CDS | 55.0% | |
| GAACCACTGTGGCTCAAAGG+AGG | + | chr7.3:67907643-67907662 | MS.gene62602:CDS | 55.0% | |
| GTACGGACAGTCGTCAGGAA+AGG | + | chr7.3:67906529-67906548 | MS.gene62602:CDS | 55.0% | |
| GTTCCCACGGTAAGCAACTC+TGG | + | chr7.3:67907599-67907618 | MS.gene62602:CDS | 55.0% | |
| GTTCCCAGAGTTGCTTACCG+TGG | - | chr7.3:67907606-67907625 | None:intergenic | 55.0% | |
| TCATGGCAACGCTGCTGATC+TGG | + | chr7.3:67904955-67904974 | MS.gene62602:CDS | 55.0% | |
| TGTTGGAAGTGGCCCGACTT+TGG | + | chr7.3:67906748-67906767 | MS.gene62602:CDS | 55.0% | |
| TCTGGGTACGGACAGTCGTC+AGG | + | chr7.3:67906524-67906543 | MS.gene62602:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 67904755 | 67908062 | 67904755 | ID=MS.gene62602 |
| chr7.3 | mRNA | 67904755 | 67908062 | 67904755 | ID=MS.gene62602.t1;Parent=MS.gene62602 |
| chr7.3 | exon | 67904755 | 67905035 | 67904755 | ID=MS.gene62602.t1.exon1;Parent=MS.gene62602.t1 |
| chr7.3 | CDS | 67904755 | 67905035 | 67904755 | ID=cds.MS.gene62602.t1;Parent=MS.gene62602.t1 |
| chr7.3 | exon | 67906514 | 67906550 | 67906514 | ID=MS.gene62602.t1.exon2;Parent=MS.gene62602.t1 |
| chr7.3 | CDS | 67906514 | 67906550 | 67906514 | ID=cds.MS.gene62602.t1;Parent=MS.gene62602.t1 |
| chr7.3 | exon | 67906647 | 67906883 | 67906647 | ID=MS.gene62602.t1.exon3;Parent=MS.gene62602.t1 |
| chr7.3 | CDS | 67906647 | 67906883 | 67906647 | ID=cds.MS.gene62602.t1;Parent=MS.gene62602.t1 |
| chr7.3 | exon | 67906968 | 67907015 | 67906968 | ID=MS.gene62602.t1.exon4;Parent=MS.gene62602.t1 |
| chr7.3 | CDS | 67906968 | 67907015 | 67906968 | ID=cds.MS.gene62602.t1;Parent=MS.gene62602.t1 |
| chr7.3 | exon | 67907574 | 67908062 | 67907574 | ID=MS.gene62602.t1.exon5;Parent=MS.gene62602.t1 |
| chr7.3 | CDS | 67907574 | 67908062 | 67907574 | ID=cds.MS.gene62602.t1;Parent=MS.gene62602.t1 |
| Gene Sequence |
| Protein sequence |
