Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62738.t1 | RHN75922.1 | 70.5 | 122 | 5 | 1 | 1 | 91 | 84 | 205 | 4.00E-39 | 171.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62738.t1 | Q10NX8 | 59.8 | 122 | 18 | 1 | 1 | 91 | 95 | 216 | 1.8e-35 | 150.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62738.t1 | G7IRQ0 | 70.5 | 122 | 5 | 1 | 1 | 91 | 84 | 205 | 2.9e-39 | 171.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049254 | MS.gene62738 | 0.827505 | 1.51E-54 | -1.69E-46 |
| MS.gene049977 | MS.gene62738 | 0.817356 | 3.44E-52 | -1.69E-46 |
| MS.gene051279 | MS.gene62738 | 0.808153 | 3.56E-50 | -1.69E-46 |
| MS.gene052447 | MS.gene62738 | 0.834111 | 3.62E-56 | -1.69E-46 |
| MS.gene052519 | MS.gene62738 | 0.802177 | 6.35E-49 | -1.69E-46 |
| MS.gene052584 | MS.gene62738 | 0.800658 | 1.30E-48 | -1.69E-46 |
| MS.gene05329 | MS.gene62738 | 0.810449 | 1.15E-50 | -1.69E-46 |
| MS.gene053396 | MS.gene62738 | 0.809697 | 1.66E-50 | -1.69E-46 |
| MS.gene05415 | MS.gene62738 | 0.836674 | 8.15E-57 | -1.69E-46 |
| MS.gene05423 | MS.gene62738 | 0.818453 | 1.94E-52 | -1.69E-46 |
| MS.gene054651 | MS.gene62738 | 0.81252 | 4.07E-51 | -1.69E-46 |
| MS.gene05531 | MS.gene62738 | 0.80195 | 7.07E-49 | -1.69E-46 |
| MS.gene056272 | MS.gene62738 | 0.819688 | 1.02E-52 | -1.69E-46 |
| MS.gene056366 | MS.gene62738 | 0.803282 | 3.76E-49 | -1.69E-46 |
| MS.gene057414 | MS.gene62738 | 0.817483 | 3.22E-52 | -1.69E-46 |
| MS.gene058625 | MS.gene62738 | 0.807796 | 4.24E-50 | -1.69E-46 |
| MS.gene060521 | MS.gene62738 | 0.811452 | 6.95E-51 | -1.69E-46 |
| MS.gene060634 | MS.gene62738 | -0.801955 | 7.05E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62738.t1 | MTR_2g094020 | 70.492 | 122 | 5 | 1 | 1 | 91 | 84 | 205 | 1.57e-48 | 168 |
| MS.gene62738.t1 | MTR_2g094060 | 68.852 | 122 | 7 | 1 | 1 | 91 | 84 | 205 | 1.77e-47 | 164 |
| MS.gene62738.t1 | MTR_2g094060 | 68.852 | 122 | 7 | 1 | 1 | 91 | 84 | 205 | 2.58e-47 | 165 |
| MS.gene62738.t1 | MTR_2g094060 | 68.852 | 122 | 7 | 1 | 1 | 91 | 84 | 205 | 2.65e-47 | 165 |
| MS.gene62738.t1 | MTR_4g059680 | 57.377 | 122 | 21 | 1 | 1 | 91 | 88 | 209 | 1.06e-36 | 135 |
| MS.gene62738.t1 | MTR_3g062610 | 56.923 | 130 | 44 | 2 | 70 | 189 | 64 | 191 | 1.86e-36 | 129 |
| MS.gene62738.t1 | MTR_3g062610 | 56.923 | 130 | 44 | 2 | 70 | 189 | 64 | 191 | 4.06e-36 | 130 |
| MS.gene62738.t1 | MTR_1g018200 | 40.909 | 154 | 60 | 1 | 1 | 123 | 93 | 246 | 1.42e-31 | 120 |
| MS.gene62738.t1 | MTR_1g023120 | 47.934 | 121 | 32 | 1 | 1 | 90 | 91 | 211 | 5.83e-31 | 118 |
| MS.gene62738.t1 | MTR_1g023120 | 47.934 | 121 | 32 | 1 | 1 | 90 | 33 | 153 | 7.04e-31 | 118 |
| MS.gene62738.t1 | MTR_2g100110 | 49.587 | 121 | 30 | 1 | 1 | 90 | 90 | 210 | 1.01e-30 | 117 |
| MS.gene62738.t1 | MTR_2g100110 | 49.587 | 121 | 30 | 1 | 1 | 90 | 90 | 210 | 1.39e-30 | 117 |
| MS.gene62738.t1 | MTR_5g075680 | 43.796 | 137 | 65 | 2 | 63 | 189 | 50 | 184 | 2.22e-30 | 111 |
| MS.gene62738.t1 | MTR_2g039120 | 46.721 | 122 | 34 | 1 | 1 | 91 | 90 | 211 | 2.37e-30 | 116 |
| MS.gene62738.t1 | MTR_8g085210 | 47.934 | 121 | 32 | 1 | 1 | 90 | 112 | 232 | 3.76e-30 | 116 |
| MS.gene62738.t1 | MTR_2g039120 | 46.721 | 122 | 34 | 1 | 1 | 91 | 90 | 211 | 3.82e-30 | 116 |
| MS.gene62738.t1 | MTR_2g039120 | 46.721 | 122 | 34 | 1 | 1 | 91 | 90 | 211 | 4.61e-30 | 116 |
| MS.gene62738.t1 | MTR_2g039120 | 46.721 | 122 | 34 | 1 | 1 | 91 | 90 | 211 | 4.66e-30 | 115 |
| MS.gene62738.t1 | MTR_3g112370 | 46.281 | 121 | 34 | 1 | 1 | 90 | 90 | 210 | 1.33e-29 | 114 |
| MS.gene62738.t1 | MTR_5g075680 | 43.796 | 137 | 65 | 2 | 63 | 189 | 50 | 184 | 1.41e-29 | 111 |
| MS.gene62738.t1 | MTR_5g075680 | 48.305 | 118 | 51 | 1 | 82 | 189 | 14 | 131 | 1.56e-29 | 111 |
| MS.gene62738.t1 | MTR_5g075680 | 43.796 | 137 | 65 | 2 | 63 | 189 | 50 | 184 | 2.70e-29 | 112 |
| MS.gene62738.t1 | MTR_5g021190 | 44.628 | 121 | 36 | 1 | 1 | 90 | 88 | 208 | 2.87e-29 | 114 |
| MS.gene62738.t1 | MTR_3g096910 | 45.082 | 122 | 36 | 1 | 1 | 91 | 89 | 210 | 5.78e-29 | 112 |
| MS.gene62738.t1 | MTR_3g005570 | 47.154 | 123 | 34 | 1 | 1 | 92 | 88 | 210 | 1.24e-28 | 112 |
| MS.gene62738.t1 | MTR_8g016230 | 37.013 | 154 | 66 | 1 | 1 | 123 | 87 | 240 | 3.84e-28 | 110 |
| MS.gene62738.t1 | MTR_2g042610 | 41.463 | 123 | 41 | 1 | 1 | 92 | 89 | 211 | 1.34e-25 | 103 |
| MS.gene62738.t1 | MTR_4g126330 | 70.000 | 60 | 18 | 0 | 1 | 60 | 32 | 91 | 4.17e-25 | 101 |
| MS.gene62738.t1 | MTR_5g025830 | 43.089 | 123 | 39 | 1 | 1 | 92 | 90 | 212 | 1.66e-24 | 100 |
| MS.gene62738.t1 | MTR_3g117840 | 39.837 | 123 | 43 | 1 | 1 | 92 | 97 | 219 | 5.75e-24 | 98.6 |
| MS.gene62738.t1 | MTR_5g024080 | 39.837 | 123 | 43 | 1 | 1 | 92 | 72 | 194 | 4.53e-23 | 95.9 |
| MS.gene62738.t1 | MTR_4g073290 | 42.500 | 120 | 38 | 1 | 2 | 90 | 91 | 210 | 4.77e-23 | 95.9 |
| MS.gene62738.t1 | MTR_3g088520 | 40.984 | 122 | 41 | 1 | 1 | 91 | 88 | 209 | 5.90e-22 | 92.8 |
| MS.gene62738.t1 | MTR_3g088520 | 40.984 | 122 | 41 | 1 | 1 | 91 | 33 | 154 | 7.56e-22 | 92.4 |
| MS.gene62738.t1 | MTR_7g022890 | 51.042 | 96 | 45 | 1 | 94 | 189 | 46 | 139 | 1.22e-17 | 79.7 |
| MS.gene62738.t1 | MTR_3g096900 | 59.322 | 59 | 24 | 0 | 1 | 59 | 89 | 147 | 1.49e-17 | 80.1 |
| MS.gene62738.t1 | MTR_7g022890 | 51.042 | 96 | 45 | 1 | 94 | 189 | 99 | 192 | 1.58e-17 | 79.7 |
| MS.gene62738.t1 | MTR_3g096900 | 59.322 | 59 | 24 | 0 | 1 | 59 | 89 | 147 | 2.29e-17 | 79.7 |
| MS.gene62738.t1 | MTR_3g096900 | 59.322 | 59 | 24 | 0 | 1 | 59 | 89 | 147 | 2.43e-17 | 79.3 |
| MS.gene62738.t1 | MTR_8g046550 | 54.023 | 87 | 38 | 1 | 103 | 189 | 104 | 188 | 3.38e-15 | 72.8 |
| MS.gene62738.t1 | MTR_3g080090 | 51.648 | 91 | 42 | 1 | 99 | 189 | 105 | 193 | 4.88e-15 | 72.4 |
| MS.gene62738.t1 | MTR_3g081690 | 74.419 | 43 | 11 | 0 | 147 | 189 | 1 | 43 | 5.70e-15 | 72.0 |
| MS.gene62738.t1 | MTR_3g082050 | 74.419 | 43 | 11 | 0 | 147 | 189 | 1 | 43 | 6.82e-15 | 72.0 |
| MS.gene62738.t1 | MTR_3g082050 | 74.419 | 43 | 11 | 0 | 147 | 189 | 1 | 43 | 7.58e-15 | 72.0 |
| MS.gene62738.t1 | MTR_2g064405 | 48.421 | 95 | 49 | 0 | 95 | 189 | 93 | 187 | 7.98e-15 | 72.0 |
| MS.gene62738.t1 | MTR_2g064405 | 48.421 | 95 | 49 | 0 | 95 | 189 | 16 | 110 | 9.41e-15 | 71.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62738.t1 | AT2G28470 | 59.016 | 122 | 19 | 1 | 1 | 91 | 88 | 209 | 5.01e-40 | 144 |
| MS.gene62738.t1 | AT2G28470 | 59.016 | 122 | 19 | 1 | 1 | 91 | 88 | 209 | 5.01e-40 | 144 |
| MS.gene62738.t1 | AT2G28470 | 59.016 | 122 | 19 | 1 | 1 | 91 | 94 | 215 | 5.04e-40 | 144 |
| MS.gene62738.t1 | AT2G28470 | 59.016 | 122 | 19 | 1 | 1 | 91 | 94 | 215 | 5.04e-40 | 144 |
| MS.gene62738.t1 | AT2G28470 | 59.016 | 122 | 19 | 1 | 1 | 91 | 94 | 215 | 6.56e-40 | 144 |
| MS.gene62738.t1 | AT2G32810 | 49.587 | 121 | 30 | 1 | 1 | 90 | 100 | 220 | 2.99e-33 | 125 |
| MS.gene62738.t1 | AT2G32810 | 49.587 | 121 | 30 | 1 | 1 | 90 | 100 | 220 | 3.21e-33 | 125 |
| MS.gene62738.t1 | AT4G36360 | 46.721 | 122 | 34 | 1 | 1 | 91 | 95 | 216 | 3.27e-31 | 119 |
| MS.gene62738.t1 | AT4G36360 | 46.721 | 122 | 34 | 1 | 1 | 91 | 95 | 216 | 3.27e-31 | 119 |
| MS.gene62738.t1 | AT3G58060 | 81.538 | 65 | 12 | 0 | 125 | 189 | 133 | 197 | 9.12e-31 | 116 |
| MS.gene62738.t1 | AT3G58060 | 81.538 | 65 | 12 | 0 | 125 | 189 | 133 | 197 | 9.12e-31 | 116 |
| MS.gene62738.t1 | AT3G13750 | 48.760 | 121 | 31 | 1 | 1 | 90 | 96 | 216 | 1.82e-30 | 117 |
| MS.gene62738.t1 | AT4G26140 | 39.355 | 155 | 63 | 1 | 1 | 124 | 91 | 245 | 3.60e-30 | 115 |
| MS.gene62738.t1 | AT4G26140 | 40.268 | 149 | 58 | 1 | 1 | 118 | 91 | 239 | 3.89e-30 | 115 |
| MS.gene62738.t1 | AT4G26140 | 40.268 | 149 | 58 | 1 | 1 | 118 | 91 | 239 | 3.89e-30 | 115 |
| MS.gene62738.t1 | AT4G26140 | 39.355 | 155 | 63 | 1 | 1 | 124 | 91 | 245 | 4.31e-30 | 116 |
| MS.gene62738.t1 | AT4G26140 | 39.355 | 155 | 63 | 1 | 1 | 124 | 91 | 245 | 4.33e-30 | 116 |
| MS.gene62738.t1 | AT4G26140 | 39.355 | 155 | 63 | 1 | 1 | 124 | 91 | 245 | 4.63e-30 | 115 |
| MS.gene62738.t1 | AT4G26140 | 39.355 | 155 | 63 | 1 | 1 | 124 | 91 | 245 | 4.80e-30 | 116 |
| MS.gene62738.t1 | AT4G26140 | 39.355 | 155 | 63 | 1 | 1 | 124 | 91 | 245 | 5.03e-30 | 115 |
| MS.gene62738.t1 | AT4G26140 | 39.355 | 155 | 63 | 1 | 1 | 124 | 91 | 245 | 5.03e-30 | 115 |
| MS.gene62738.t1 | AT1G45130 | 45.902 | 122 | 35 | 1 | 1 | 91 | 93 | 214 | 4.44e-29 | 113 |
| MS.gene62738.t1 | AT1G45130 | 45.902 | 122 | 35 | 1 | 1 | 91 | 14 | 135 | 5.26e-29 | 113 |
| MS.gene62738.t1 | AT5G56870 | 46.721 | 122 | 34 | 1 | 1 | 91 | 91 | 212 | 1.33e-28 | 112 |
| MS.gene62738.t1 | AT5G20710 | 45.528 | 123 | 36 | 1 | 1 | 92 | 90 | 212 | 2.14e-28 | 111 |
| MS.gene62738.t1 | AT1G31740 | 37.584 | 149 | 62 | 1 | 1 | 118 | 84 | 232 | 6.48e-28 | 110 |
| MS.gene62738.t1 | AT3G52840 | 45.902 | 122 | 35 | 1 | 1 | 91 | 145 | 266 | 2.70e-27 | 108 |
| MS.gene62738.t1 | AT3G52840 | 46.281 | 121 | 34 | 1 | 1 | 90 | 91 | 211 | 3.25e-27 | 107 |
| MS.gene62738.t1 | AT5G63800 | 42.149 | 121 | 39 | 1 | 1 | 90 | 94 | 214 | 1.18e-25 | 103 |
| MS.gene62738.t1 | AT1G77410 | 41.803 | 122 | 40 | 1 | 1 | 91 | 87 | 208 | 4.37e-25 | 102 |
| MS.gene62738.t1 | AT1G77410 | 40.157 | 127 | 40 | 1 | 1 | 91 | 87 | 213 | 1.91e-24 | 100 |
| MS.gene62738.t1 | AT5G63810 | 39.837 | 123 | 43 | 1 | 1 | 92 | 94 | 216 | 5.19e-23 | 95.9 |
| MS.gene62738.t1 | AT2G16730 | 39.024 | 123 | 44 | 1 | 1 | 92 | 106 | 228 | 8.53e-23 | 95.5 |
| MS.gene62738.t1 | AT4G38590 | 39.024 | 123 | 44 | 1 | 1 | 92 | 33 | 155 | 1.12e-22 | 95.1 |
| MS.gene62738.t1 | AT4G38590 | 39.024 | 123 | 44 | 1 | 1 | 92 | 101 | 223 | 1.36e-22 | 94.7 |
| MS.gene62738.t1 | AT4G35010 | 34.959 | 123 | 49 | 1 | 1 | 92 | 103 | 225 | 1.49e-19 | 85.9 |
| MS.gene62738.t1 | AT2G39450 | 50.000 | 96 | 46 | 1 | 94 | 189 | 93 | 186 | 1.69e-16 | 76.6 |
| MS.gene62738.t1 | AT1G79520 | 60.870 | 69 | 27 | 0 | 121 | 189 | 75 | 143 | 2.34e-15 | 73.2 |
| MS.gene62738.t1 | AT1G79520 | 60.870 | 69 | 27 | 0 | 121 | 189 | 75 | 143 | 2.34e-15 | 73.2 |
| MS.gene62738.t1 | AT1G79520 | 60.870 | 69 | 27 | 0 | 121 | 189 | 128 | 196 | 3.45e-15 | 73.2 |
| MS.gene62738.t1 | AT1G79520 | 60.870 | 69 | 27 | 0 | 121 | 189 | 140 | 208 | 3.80e-15 | 72.8 |
| MS.gene62738.t1 | AT1G16310 | 60.870 | 69 | 27 | 0 | 121 | 189 | 155 | 223 | 5.93e-15 | 72.4 |
| MS.gene62738.t1 | AT1G16310 | 60.870 | 69 | 27 | 0 | 121 | 189 | 42 | 110 | 6.71e-15 | 71.6 |
Find 41 sgRNAs with CRISPR-Local
Find 102 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACTGACAATGAACCATTTA+AGG | 0.172483 | 8.4:+81560719 | MS.gene62738:CDS |
| GGATTCTCTGCTTCATCTAT+TGG | 0.185819 | 8.4:+81562058 | MS.gene62738:CDS |
| GAACGTTTCCTTACCTTAAA+TGG | 0.203447 | 8.4:-81560732 | None:intergenic |
| GTTTGTGCTGAATGGAACTA+TGG | 0.350260 | 8.4:+81560576 | MS.gene62738:CDS |
| ATGGCTACATCTCTTGATAT+AGG | 0.396704 | 8.4:+81561082 | MS.gene62738:CDS |
| CTGGTAAATCATACATCAAT+TGG | 0.400918 | 8.4:+81561050 | MS.gene62738:CDS |
| TTCCAGATTGAAGATGAGTA+TGG | 0.407622 | 8.4:+81561001 | MS.gene62738:intron |
| AGCTATTGCAGCATCAACTT+TGG | 0.408001 | 8.4:+81562037 | MS.gene62738:CDS |
| CTGCTTCATCTATTGGTTGG+TGG | 0.423199 | 8.4:+81562065 | MS.gene62738:CDS |
| GTCCATATGTTTGTGCTGAA+TGG | 0.430727 | 8.4:+81560568 | MS.gene62738:CDS |
| TTCCATTCAGCACAAACATA+TGG | 0.448715 | 8.4:-81560570 | None:intergenic |
| TAAATGGTTCATTGTCAGTT+GGG | 0.452498 | 8.4:-81560716 | None:intergenic |
| TCTCTGCTTCATCTATTGGT+TGG | 0.453881 | 8.4:+81562062 | MS.gene62738:CDS |
| CTTTGGCTTAACTTCATCCC+AGG | 0.459958 | 8.4:+81560684 | MS.gene62738:CDS |
| TATTGGTTGGTGGTATACTT+TGG | 0.461717 | 8.4:+81562075 | MS.gene62738:CDS |
| AAACTGAGGGTGCAGCCAGC+AGG | 0.475531 | 8.4:+81562149 | MS.gene62738:CDS |
| GCTGCTGTCATGGCCACACT+TGG | 0.478615 | 8.4:+81562185 | MS.gene62738:CDS |
| GGTAAGTTTGCAGCTTTGAC+AGG | 0.480207 | 8.4:-81561547 | None:intergenic |
| GGAGACATCGATTCAGCCTA+TGG | 0.480983 | 8.4:+81561022 | MS.gene62738:CDS |
| TGTAGACATATGCGACGATA+AGG | 0.494037 | 8.4:+81562003 | MS.gene62738:intron |
| CTATATGTGCATCTCCGTAT+TGG | 0.495851 | 8.4:+81560546 | MS.gene62738:CDS |
| TCAGTTGGGAACTTAATCCC+TGG | 0.511302 | 8.4:-81560702 | None:intergenic |
| TTAAATGGTTCATTGTCAGT+TGG | 0.513735 | 8.4:-81560717 | None:intergenic |
| CAGTTGGGAACTTAATCCCT+GGG | 0.517107 | 8.4:-81560701 | None:intergenic |
| GTGAAAGCAGTGGCTGAGGC+AGG | 0.519491 | 8.4:+81560522 | MS.gene62738:CDS |
| TTTGGCTTAACTTCATCCCA+GGG | 0.523495 | 8.4:+81560685 | MS.gene62738:CDS |
| GATTCAGCCTATGGTTCTGC+TGG | 0.524874 | 8.4:+81561031 | MS.gene62738:CDS |
| AATATCTACCAGTATCCCAT+TGG | 0.548999 | 8.4:+81562125 | MS.gene62738:CDS |
| TGATTTACCAGCAGAACCAT+AGG | 0.557167 | 8.4:-81561038 | None:intergenic |
| CACAAACATATGGACCAATA+CGG | 0.573068 | 8.4:-81560560 | None:intergenic |
| CAAATTTGACTCACCAAGTG+TGG | 0.593321 | 8.4:-81562198 | None:intergenic |
| ATTTGTGAAAGCAGTGGCTG+AGG | 0.607383 | 8.4:+81560518 | MS.gene62738:CDS |
| GGGATGAAGTTAAGCCAAAG+AGG | 0.618858 | 8.4:-81560681 | None:intergenic |
| GGATGAAGTTAAGCCAAAGA+GGG | 0.630030 | 8.4:-81560680 | None:intergenic |
| TTTGTGCTGAATGGAACTAT+GGG | 0.643438 | 8.4:+81560577 | MS.gene62738:CDS |
| GTATCCCATTGGAAAACTGA+GGG | 0.649654 | 8.4:+81562136 | MS.gene62738:CDS |
| ACATATGCGACGATAAGGAG+TGG | 0.654802 | 8.4:+81562008 | MS.gene62738:CDS |
| AGTATCCCATTGGAAAACTG+AGG | 0.662300 | 8.4:+81562135 | MS.gene62738:CDS |
| GGTGAAATTTGTGAAAGCAG+TGG | 0.671103 | 8.4:+81560512 | MS.gene62738:CDS |
| AAAGCTGCAAACTTACCACA+TGG | 0.671567 | 8.4:+81561553 | MS.gene62738:CDS |
| TAGAGATGTGAAACTCCATG+TGG | 0.755788 | 8.4:-81561568 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAAAAATAATTCACAAA+AGG | - | chr8.4:81561923-81561942 | None:intergenic | 10.0% |
| !!! | TTTATTTATTTTTGTTGAAA+AGG | + | chr8.4:81561936-81561955 | MS.gene62738:intron | 10.0% |
| !!! | ATTTATGTGTATTATTTTTC+TGG | + | chr8.4:81560612-81560631 | MS.gene62738:intron | 15.0% |
| !!! | GTTTTTTATCATTAAATACA+TGG | + | chr8.4:81560892-81560911 | MS.gene62738:intron | 15.0% |
| !!! | TGCATTATTTTTTTGAATTT+TGG | + | chr8.4:81561621-81561640 | MS.gene62738:intron | 15.0% |
| !!! | TTTATGTGTATTATTTTTCT+GGG | + | chr8.4:81560613-81560632 | MS.gene62738:intron | 15.0% |
| !! | AAAAACTCAAATGAATAGAA+GGG | - | chr8.4:81561456-81561475 | None:intergenic | 20.0% |
| !!! | AATTAATCACATGAACTTTT+TGG | + | chr8.4:81561835-81561854 | MS.gene62738:intron | 20.0% |
| !!! | ATGTTTGCAAAATTTCATTT+TGG | + | chr8.4:81561313-81561332 | MS.gene62738:intron | 20.0% |
| !!! | TTATGTGTATTATTTTTCTG+GGG | + | chr8.4:81560614-81560633 | MS.gene62738:intron | 20.0% |
| ! | CAAAAACTCAAATGAATAGA+AGG | - | chr8.4:81561457-81561476 | None:intergenic | 25.0% |
| ! | TTAATTCCTTTGCAGATATT+TGG | + | chr8.4:81561233-81561252 | MS.gene62738:intron | 25.0% |
| ! | TTGATCTATTAATGTCACAA+TGG | - | chr8.4:81561486-81561505 | None:intergenic | 25.0% |
| !! | CATTTTTGAATGGAAAAGAA+AGG | + | chr8.4:81561778-81561797 | MS.gene62738:intron | 25.0% |
| !!! | AATTTTGGTTGCAGTAATTA+AGG | + | chr8.4:81561636-81561655 | MS.gene62738:intron | 25.0% |
| !!! | ATTTTGGTTGCAGTAATTAA+GGG | + | chr8.4:81561637-81561656 | MS.gene62738:intron | 25.0% |
| AACTGACAATGAACCATTTA+AGG | + | chr8.4:81560719-81560738 | MS.gene62738:CDS | 30.0% | |
| CATAATCCAAATATCTGCAA+AGG | - | chr8.4:81561242-81561261 | None:intergenic | 30.0% | |
| CTGGTAAATCATACATCAAT+TGG | + | chr8.4:81561050-81561069 | MS.gene62738:CDS | 30.0% | |
| TAAATGGTTCATTGTCAGTT+GGG | - | chr8.4:81560719-81560738 | None:intergenic | 30.0% | |
| TTAAATGGTTCATTGTCAGT+TGG | - | chr8.4:81560720-81560739 | None:intergenic | 30.0% | |
| TTCCATTCAAAAATGAAGCA+AGG | - | chr8.4:81561773-81561792 | None:intergenic | 30.0% | |
| TTGCAAACATAGCATATACA+CGG | - | chr8.4:81561303-81561322 | None:intergenic | 30.0% | |
| ! | AAAGTACTTGCAACCTAAAT+TGG | - | chr8.4:81561692-81561711 | None:intergenic | 30.0% |
| ! | ACAATGAACCATTTAAGGTA+AGG | + | chr8.4:81560724-81560743 | MS.gene62738:intron | 30.0% |
| !! | AGAAAGGCTATTTTCAGTTA+CGG | + | chr8.4:81561794-81561813 | MS.gene62738:intron | 30.0% |
| !!! | TCTTGGTTTTAAAGGTTTGT+TGG | + | chr8.4:81561363-81561382 | MS.gene62738:intron | 30.0% |
| AATATCTACCAGTATCCCAT+TGG | + | chr8.4:81562125-81562144 | MS.gene62738:CDS | 35.0% | |
| AATTAAGGGCAGTGAACTAA+TGG | + | chr8.4:81561651-81561670 | MS.gene62738:intron | 35.0% | |
| ACTAATGGGAAGAGTGAAAT+TGG | + | chr8.4:81561666-81561685 | MS.gene62738:intron | 35.0% | |
| AGAGTGAAATTGGCCAATTT+AGG | + | chr8.4:81561676-81561695 | MS.gene62738:intron | 35.0% | |
| ATGAGATCGACAATATTAGC+GGG | - | chr8.4:81560840-81560859 | None:intergenic | 35.0% | |
| ATGGAACTATGGGTAAAGTT+TGG | + | chr8.4:81560587-81560606 | MS.gene62738:intron | 35.0% | |
| ATGGCTACATCTCTTGATAT+AGG | + | chr8.4:81561082-81561101 | MS.gene62738:CDS | 35.0% | |
| ATTAAGGGCAGTGAACTAAT+GGG | + | chr8.4:81561652-81561671 | MS.gene62738:intron | 35.0% | |
| CACAAACATATGGACCAATA+CGG | - | chr8.4:81560563-81560582 | None:intergenic | 35.0% | |
| CATGAGATCGACAATATTAG+CGG | - | chr8.4:81560841-81560860 | None:intergenic | 35.0% | |
| GAACGTTTCCTTACCTTAAA+TGG | - | chr8.4:81560735-81560754 | None:intergenic | 35.0% | |
| GAGTTTCACATCTCTAATGT+AGG | + | chr8.4:81561575-81561594 | MS.gene62738:intron | 35.0% | |
| TCTTGATATAGGTGTTCCTT+GGG | + | chr8.4:81561093-81561112 | MS.gene62738:intron | 35.0% | |
| TTCAAAAATGAAGCAAGGTG+TGG | - | chr8.4:81561768-81561787 | None:intergenic | 35.0% | |
| TTCCAGATTGAAGATGAGTA+TGG | + | chr8.4:81561001-81561020 | MS.gene62738:intron | 35.0% | |
| TTCCATTCAGCACAAACATA+TGG | - | chr8.4:81560573-81560592 | None:intergenic | 35.0% | |
| TTTCACATCTCTAATGTAGG+TGG | + | chr8.4:81561578-81561597 | MS.gene62738:intron | 35.0% | |
| TTTGTGCTGAATGGAACTAT+GGG | + | chr8.4:81560577-81560596 | MS.gene62738:CDS | 35.0% | |
| !! | CACCTTGCTTCATTTTTGAA+TGG | + | chr8.4:81561768-81561787 | MS.gene62738:intron | 35.0% |
| !! | GAAAGGCTATTTTCAGTTAC+GGG | + | chr8.4:81561795-81561814 | MS.gene62738:intron | 35.0% |
| !! | TATTGGTTGGTGGTATACTT+TGG | + | chr8.4:81562075-81562094 | MS.gene62738:CDS | 35.0% |
| !!! | AATTGTTTTTGCTGCTGTCA+TGG | + | chr8.4:81562175-81562194 | MS.gene62738:CDS | 35.0% |
| !!! | ACTGCTCTTCTTGGTTTTAA+AGG | + | chr8.4:81561355-81561374 | MS.gene62738:intron | 35.0% |
| AAAGCTGCAAACTTACCACA+TGG | + | chr8.4:81561553-81561572 | MS.gene62738:CDS | 40.0% | |
| AGCTATTGCAGCATCAACTT+TGG | + | chr8.4:81562037-81562056 | MS.gene62738:CDS | 40.0% | |
| AGTATCCCATTGGAAAACTG+AGG | + | chr8.4:81562135-81562154 | MS.gene62738:CDS | 40.0% | |
| CATCAATTGGCCAGCAAAAA+TGG | + | chr8.4:81561063-81561082 | MS.gene62738:CDS | 40.0% | |
| CTATATGTGCATCTCCGTAT+TGG | + | chr8.4:81560546-81560565 | MS.gene62738:CDS | 40.0% | |
| CTCCATACTCATCTTCAATC+TGG | - | chr8.4:81561006-81561025 | None:intergenic | 40.0% | |
| CTCTTGATATAGGTGTTCCT+TGG | + | chr8.4:81561092-81561111 | MS.gene62738:intron | 40.0% | |
| GCAAAAACAATTATGCCTGC+TGG | - | chr8.4:81562167-81562186 | None:intergenic | 40.0% | |
| GGATGAAGTTAAGCCAAAGA+GGG | - | chr8.4:81560683-81560702 | None:intergenic | 40.0% | |
| GGATTCTCTGCTTCATCTAT+TGG | + | chr8.4:81562058-81562077 | MS.gene62738:CDS | 40.0% | |
| GGGTGTTCATGTCTAATTGA+GGG | + | chr8.4:81560634-81560653 | MS.gene62738:intron | 40.0% | |
| GGTGAAATTTGTGAAAGCAG+TGG | + | chr8.4:81560512-81560531 | MS.gene62738:CDS | 40.0% | |
| GTATCCCATTGGAAAACTGA+GGG | + | chr8.4:81562136-81562155 | MS.gene62738:CDS | 40.0% | |
| GTCCATATGTTTGTGCTGAA+TGG | + | chr8.4:81560568-81560587 | MS.gene62738:CDS | 40.0% | |
| GTTTGTGCTGAATGGAACTA+TGG | + | chr8.4:81560576-81560595 | MS.gene62738:CDS | 40.0% | |
| TAGAGATGTGAAACTCCATG+TGG | - | chr8.4:81561571-81561590 | None:intergenic | 40.0% | |
| TCCTTAAATCCGAGTTCACT+TGG | + | chr8.4:81560777-81560796 | MS.gene62738:intron | 40.0% | |
| TCTCTGCTTCATCTATTGGT+TGG | + | chr8.4:81562062-81562081 | MS.gene62738:CDS | 40.0% | |
| TGAGATCGACAATATTAGCG+GGG | - | chr8.4:81560839-81560858 | None:intergenic | 40.0% | |
| TGATTTACCAGCAGAACCAT+AGG | - | chr8.4:81561041-81561060 | None:intergenic | 40.0% | |
| TGTAGACATATGCGACGATA+AGG | + | chr8.4:81562003-81562022 | MS.gene62738:intron | 40.0% | |
| ! | TCAGTTTTCCAATGGGATAC+TGG | - | chr8.4:81562136-81562155 | None:intergenic | 40.0% |
| ! | TTGACAGTGTTTTCCCTCTT+TGG | + | chr8.4:81560667-81560686 | MS.gene62738:intron | 40.0% |
| ! | TTTGGCTTAACTTCATCCCA+GGG | + | chr8.4:81560685-81560704 | MS.gene62738:CDS | 40.0% |
| ! | TTTTGATGGGAGGAAGGATT+TGG | + | chr8.4:81560491-81560510 | MS.gene62738:CDS | 40.0% |
| !! | TCATTTTGGCAACAATCGAG+AGG | + | chr8.4:81561327-81561346 | MS.gene62738:intron | 40.0% |
| !!! | ACATGAACTTTTTGGCTGCT+TGG | + | chr8.4:81561843-81561862 | MS.gene62738:intron | 40.0% |
| !!! | AGAGATGTAGCCATTTTTGC+TGG | - | chr8.4:81561076-81561095 | None:intergenic | 40.0% |
| AATGCAGACAACATGACCCA+AGG | - | chr8.4:81561112-81561131 | None:intergenic | 45.0% | |
| ACATATGCGACGATAAGGAG+TGG | + | chr8.4:81562008-81562027 | MS.gene62738:CDS | 45.0% | |
| AGTTTCCTGCCAAGTGAACT+CGG | - | chr8.4:81560789-81560808 | None:intergenic | 45.0% | |
| ATTTGTGAAAGCAGTGGCTG+AGG | + | chr8.4:81560518-81560537 | MS.gene62738:CDS | 45.0% | |
| CAGTTGGGAACTTAATCCCT+GGG | - | chr8.4:81560704-81560723 | None:intergenic | 45.0% | |
| GCCAAGTGAACTCGGATTTA+AGG | - | chr8.4:81560781-81560800 | None:intergenic | 45.0% | |
| GGGATGAAGTTAAGCCAAAG+AGG | - | chr8.4:81560684-81560703 | None:intergenic | 45.0% | |
| TAAATCCGAGTTCACTTGGC+AGG | + | chr8.4:81560781-81560800 | MS.gene62738:intron | 45.0% | |
| TCAGTTGGGAACTTAATCCC+TGG | - | chr8.4:81560705-81560724 | None:intergenic | 45.0% | |
| TGGCAGGAAACTTTGTCTTC+AGG | + | chr8.4:81560797-81560816 | MS.gene62738:intron | 45.0% | |
| ! | CTGCTTCATCTATTGGTTGG+TGG | + | chr8.4:81562065-81562084 | MS.gene62738:CDS | 45.0% |
| ! | CTTTGGCTTAACTTCATCCC+AGG | + | chr8.4:81560684-81560703 | MS.gene62738:CDS | 45.0% |
| ! | GGGGTGTTCATGTCTAATTG+AGG | + | chr8.4:81560633-81560652 | MS.gene62738:intron | 45.0% |
| ! | GGTAAGTTTGCAGCTTTGAC+AGG | - | chr8.4:81561550-81561569 | None:intergenic | 45.0% |
| ! | TGCACCCTCAGTTTTCCAAT+GGG | - | chr8.4:81562143-81562162 | None:intergenic | 45.0% |
| ACACGGAAGCAAGATGACGT+CGG | - | chr8.4:81561286-81561305 | None:intergenic | 50.0% | |
| GAGGCAACAACTGCTCTTCT+TGG | + | chr8.4:81561346-81561365 | MS.gene62738:intron | 50.0% | |
| ! | CTGCACCCTCAGTTTTCCAA+TGG | - | chr8.4:81562144-81562163 | None:intergenic | 50.0% |
| ! | GATTCAGCCTATGGTTCTGC+TGG | + | chr8.4:81561031-81561050 | MS.gene62738:CDS | 50.0% |
| !! | GGAGACATCGATTCAGCCTA+TGG | + | chr8.4:81561022-81561041 | MS.gene62738:CDS | 50.0% |
| ! | GACAAAAGCACGACGCAGCA+GGG | - | chr8.4:81560759-81560778 | None:intergenic | 55.0% |
| GTGAAAGCAGTGGCTGAGGC+AGG | + | chr8.4:81560522-81560541 | MS.gene62738:CDS | 60.0% | |
| ! | AAACTGAGGGTGCAGCCAGC+AGG | + | chr8.4:81562149-81562168 | MS.gene62738:CDS | 60.0% |
| ! | GGACAAAAGCACGACGCAGC+AGG | - | chr8.4:81560760-81560779 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 81560486 | 81562206 | 81560486 | ID=MS.gene62738 |
| chr8.4 | mRNA | 81560486 | 81562206 | 81560486 | ID=MS.gene62738.t1;Parent=MS.gene62738 |
| chr8.4 | exon | 81560486 | 81560598 | 81560486 | ID=MS.gene62738.t1.exon1;Parent=MS.gene62738.t1 |
| chr8.4 | CDS | 81560486 | 81560598 | 81560486 | ID=cds.MS.gene62738.t1;Parent=MS.gene62738.t1 |
| chr8.4 | exon | 81560674 | 81560740 | 81560674 | ID=MS.gene62738.t1.exon2;Parent=MS.gene62738.t1 |
| chr8.4 | CDS | 81560674 | 81560740 | 81560674 | ID=cds.MS.gene62738.t1;Parent=MS.gene62738.t1 |
| chr8.4 | exon | 81561007 | 81561103 | 81561007 | ID=MS.gene62738.t1.exon3;Parent=MS.gene62738.t1 |
| chr8.4 | CDS | 81561007 | 81561103 | 81561007 | ID=cds.MS.gene62738.t1;Parent=MS.gene62738.t1 |
| chr8.4 | exon | 81561501 | 81561592 | 81561501 | ID=MS.gene62738.t1.exon4;Parent=MS.gene62738.t1 |
| chr8.4 | CDS | 81561501 | 81561592 | 81561501 | ID=cds.MS.gene62738.t1;Parent=MS.gene62738.t1 |
| chr8.4 | exon | 81562008 | 81562206 | 81562008 | ID=MS.gene62738.t1.exon5;Parent=MS.gene62738.t1 |
| chr8.4 | CDS | 81562008 | 81562206 | 81562008 | ID=cds.MS.gene62738.t1;Parent=MS.gene62738.t1 |
| Gene Sequence |
| Protein sequence |
