AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene62990


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene62990.t1 MTR_1g030750 99.696 329 1 0 1 329 46 374 0.0 672
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene62990.t1 AT2G01350 81.270 315 59 0 15 329 13 327 0.0 541
MS.gene62990.t1 AT2G01350 81.270 315 59 0 15 329 34 348 0.0 540
MS.gene62990.t1 AT2G01350 80.317 315 56 1 15 329 34 342 0.0 526
MS.gene62990.t1 AT2G01350 82.206 281 50 0 49 329 1 281 1.00e-173 483

Find 73 sgRNAs with CRISPR-Local

Find 232 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCCAAACTGTAGTCCTTTA+TGG 0.108217 1.3:+16535959 None:intergenic
TCGAATAATGCTGGATAATA+TGG 0.220541 1.3:-16534338 MS.gene62990:CDS
TGAGGTTGATCCTTCTTTAA+AGG 0.228429 1.3:-16536097 MS.gene62990:intron
TTCCTTGTATAGGTATTAAT+TGG 0.238723 1.3:-16535010 MS.gene62990:intron
GTGGAGTAACCTACATTTCT+AGG 0.319411 1.3:-16533365 MS.gene62990:intron
AAAAGCTGTTGACCTGTATC+TGG 0.332775 1.3:-16534897 MS.gene62990:CDS
GCAGAAGATGCTGGGGATCT+AGG 0.339591 1.3:-16536411 MS.gene62990:intron
AAGGAGGATGGCATCGTTGC+TGG 0.343013 1.3:-16536147 MS.gene62990:CDS
GGAAGTCGAAGCTTATTTCT+TGG 0.356431 1.3:-16536172 MS.gene62990:CDS
GTCCATAAAGGACTACAGTT+TGG 0.357513 1.3:-16535961 MS.gene62990:CDS
TGCTCCGTGTTTACGTTTGT+TGG 0.360433 1.3:-16535137 MS.gene62990:CDS
CCTCAAAATTGATACTGAAT+TGG 0.380529 1.3:-16533031 MS.gene62990:CDS
TCAACATCTCCGTTTGATAA+AGG 0.380628 1.3:+16534310 None:intergenic
ATAGATACAGTACATAAAAT+CGG 0.383450 1.3:-16533393 MS.gene62990:CDS
ATATCATAATCAAGCTCTTC+CGG 0.389803 1.3:+16532987 None:intergenic
GCATCCTACTTATGATTTGA+AGG 0.401374 1.3:-16536454 MS.gene62990:CDS
CTTGCTCTTGCAGAAGATGC+TGG 0.404352 1.3:-16536420 MS.gene62990:CDS
TATTTGTGAATCCAGGCTTC+AGG 0.405459 1.3:-16533426 MS.gene62990:intron
CTACAGTTTGGAAAAGTTCA+TGG 0.424734 1.3:-16535949 MS.gene62990:intron
TTCTTTAACTCGAATAATGC+TGG 0.425179 1.3:-16534347 MS.gene62990:CDS
GAAGCTGTGCGGTTGGTCAA+TGG 0.438267 1.3:-16534271 MS.gene62990:CDS
AAGCTGTGCGGTTGGTCAAT+GGG 0.445964 1.3:-16534270 MS.gene62990:CDS
AGCATCGCCTGCATATATAT+TGG 0.446995 1.3:-16535173 MS.gene62990:CDS
ACTGAATTGGCGCTTAAAGT+TGG 0.451185 1.3:-16533018 MS.gene62990:CDS
GTTTACGTTTGTTGGATAAG+TGG 0.454989 1.3:-16535129 MS.gene62990:CDS
TTGCTTCATACCTTTAAAGA+AGG 0.458741 1.3:+16536087 None:intergenic
GCTTCGACTTCCATGTCAAA+TGG 0.464861 1.3:+16536183 None:intergenic
AAAACTTTACCTAGAAATGT+AGG 0.470300 1.3:+16533356 None:intergenic
TTTACGTTTGTTGGATAAGT+GGG 0.473302 1.3:-16535128 MS.gene62990:CDS
CTAGTCTCCAATATATATGC+AGG 0.474951 1.3:+16535166 None:intergenic
CTACCTCAACCTCCAATTGA+AGG 0.479255 1.3:+16534864 None:intergenic
CTTGTATAGGTATTAATTGG+TGG 0.481768 1.3:-16535007 MS.gene62990:intron
TAGCCTTCAATTGGAGGTTG+AGG 0.484455 1.3:-16534867 MS.gene62990:intron
CATCCTACTTATGATTTGAA+GGG 0.486121 1.3:-16536453 MS.gene62990:CDS
TTGCTCTTGCAGAAGATGCT+GGG 0.488745 1.3:-16536419 MS.gene62990:CDS
GACTAGGACTCTTGAGGAAG+TGG 0.488980 1.3:-16534404 MS.gene62990:CDS
TGCAGAGATGATATTTAATG+AGG 0.494921 1.3:-16536115 MS.gene62990:CDS
TAACATTGTTGTAGCTGAAA+GGG 0.499902 1.3:-16535803 MS.gene62990:CDS
ATGGTTGTACCTTTATCAAA+CGG 0.511127 1.3:-16534319 MS.gene62990:CDS
GATAATCATATATCAACAGC+TGG 0.512224 1.3:-16534938 MS.gene62990:CDS
ATAACATTGTTGTAGCTGAA+AGG 0.525165 1.3:-16535804 MS.gene62990:CDS
AGCTTATTTCTTGGCGAAGG+AGG 0.528001 1.3:-16536163 MS.gene62990:CDS
AATTGGCGCTTAAAGTTGGA+AGG 0.528440 1.3:-16533014 MS.gene62990:CDS
TAGATACAGTACATAAAATC+GGG 0.531386 1.3:-16533392 MS.gene62990:CDS
TATAGGTGATATAACATGCT+TGG 0.532134 1.3:-16536214 MS.gene62990:intron
TGGAGGACGAAATCATAGAA+TGG 0.532624 1.3:-16534987 MS.gene62990:CDS
TATTTCTTGGCGAAGGAGGA+TGG 0.532732 1.3:-16536159 MS.gene62990:CDS
GGAGGACGAAATCATAGAAT+GGG 0.538882 1.3:-16534986 MS.gene62990:CDS
CTTAAAGTTGGAAGGCGCAC+CGG 0.542235 1.3:-16533006 MS.gene62990:CDS
CGAAGCTTATTTCTTGGCGA+AGG 0.552796 1.3:-16536166 MS.gene62990:CDS
AACTTTATGCAGAGGATGAG+TGG 0.553734 1.3:-16535772 MS.gene62990:CDS
ATGCCCTTCAAATCATAAGT+AGG 0.554178 1.3:+16536450 None:intergenic
TAGAATGGGTTTGTTTGACA+TGG 0.558081 1.3:-16534972 MS.gene62990:CDS
GACTTCCATGTCAAATGGAA+TGG 0.559575 1.3:+16536188 None:intergenic
AAATCATAAGTAGGATGCAA+AGG 0.574927 1.3:+16536459 None:intergenic
CTTTGAAATATCAGGTGGAG+TGG 0.579489 1.3:-16536005 MS.gene62990:intron
GTATAGGTATTAATTGGTGG+AGG 0.583098 1.3:-16535004 MS.gene62990:intron
TGCTCTTGCAGAAGATGCTG+GGG 0.583554 1.3:-16536418 MS.gene62990:CDS
TGGCATTGCAACTTTAACCA+AGG 0.597429 1.3:-16535752 MS.gene62990:intron
GGCCACCATTCCATTTGACA+TGG 0.598004 1.3:-16536193 MS.gene62990:CDS
CAAAGGAGGCTTTACTGCGA+AGG 0.603116 1.3:+16536476 None:intergenic
TTCCATGTCAAATGGAATGG+TGG 0.606981 1.3:+16536191 None:intergenic
GCTGAAAGAAGCTGTGCGGT+TGG 0.613125 1.3:-16534278 MS.gene62990:CDS
CAATGGGAGATTTGAAACTG+AGG 0.629104 1.3:-16534254 MS.gene62990:intron
GGTTGAGACTAGGACTCTTG+AGG 0.629180 1.3:-16534410 MS.gene62990:CDS
TAGTGCTAAACTTTATGCAG+AGG 0.631286 1.3:-16535780 MS.gene62990:CDS
GTACATAAAATCGGGCAAAG+TGG 0.642028 1.3:-16533384 MS.gene62990:CDS
AAGGACTCGTATGAGATCGT+CGG 0.643661 1.3:+16536495 None:intergenic
TCATAAGTAGGATGCAAAGG+AGG 0.644964 1.3:+16536462 None:intergenic
ACGTTTGTTGGATAAGTGGG+CGG 0.647258 1.3:-16535125 MS.gene62990:intron
TTATCCAACAAACGTAAACA+CGG 0.659218 1.3:+16535133 None:intergenic
AATCATATATCAACAGCTGG+AGG 0.664583 1.3:-16534935 MS.gene62990:CDS
CTATGCTGAAAGAAGCTGTG+CGG 0.758489 1.3:-16534282 MS.gene62990:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAAAAAATAAAATAAAAA+TGG + chr1.3:16534760-16534779 None:intergenic 0.0%
!! TATAAAAAAATATAAATAAA+TGG + chr1.3:16534454-16534473 None:intergenic 0.0%
!! AAAATTATTCATTAAGAATC+AGG + chr1.3:16534714-16534733 None:intergenic 15.0%
!! AAATTATTCATTAAGAATCA+GGG + chr1.3:16534713-16534732 None:intergenic 15.0%
!! ATATAATAATGAACAAATCA+CGG - chr1.3:16534158-16534177 MS.gene62990:intron 15.0%
!! ATTGATAAAAAAAATGAATG+AGG + chr1.3:16534140-16534159 None:intergenic 15.0%
!! TAATATTATAAACCATATGT+TGG - chr1.3:16536309-16536328 MS.gene62990:intron 15.0%
!! TGATAAATATAAGATAACAA+TGG + chr1.3:16534278-16534297 None:intergenic 15.0%
!! TTAAGAAAATAAAAATACCT+TGG + chr1.3:16533783-16533802 None:intergenic 15.0%
!!! AAAATAGAAATTTTTTGTGA+AGG - chr1.3:16535808-16535827 MS.gene62990:CDS 15.0%
!!! GTTTTTAATTGATTTATGAA+AGG - chr1.3:16533648-16533667 MS.gene62990:intron 15.0%
!!! TATCTAATCGTTTTTTTATT+TGG - chr1.3:16535969-16535988 MS.gene62990:CDS 15.0%
!!! TTATTTTGATATCTTCAATT+TGG - chr1.3:16536005-16536024 MS.gene62990:intron 15.0%
!! ATAGATACAGTACATAAAAT+CGG - chr1.3:16536122-16536141 MS.gene62990:CDS 20.0%
!! ATATTGTATGATGTTTGTAA+AGG - chr1.3:16533829-16533848 MS.gene62990:intron 20.0%
!! ATGTATAAAAATGAAAGGAA+TGG + chr1.3:16534429-16534448 None:intergenic 20.0%
!! ATTGAATTGAAATGGTTAAA+AGG - chr1.3:16533907-16533926 MS.gene62990:intron 20.0%
!! TTGTTGTGAAATCTATTAAA+GGG + chr1.3:16534783-16534802 None:intergenic 20.0%
!!! ATAAGAAATGTTTTGACTAT+AGG - chr1.3:16533284-16533303 MS.gene62990:intron 20.0%
!!! ATAAGTGTTTTTATTGAAAC+TGG + chr1.3:16535871-16535890 None:intergenic 20.0%
!!! CAATTATATAAAGCTTTGTT+AGG + chr1.3:16534904-16534923 None:intergenic 20.0%
!!! CTAACAAAGCTTTATATAAT+TGG - chr1.3:16534902-16534921 MS.gene62990:CDS 20.0%
! AAAACTTTACCTAGAAATGT+AGG + chr1.3:16536162-16536181 None:intergenic 25.0%
! AAAATTTCATTGCTCTGATA+TGG - chr1.3:16536411-16536430 MS.gene62990:intron 25.0%
! AAAGAAGGAAAAGTTAGTTA+AGG - chr1.3:16535712-16535731 MS.gene62990:intron 25.0%
! AAATTTCATTGCTCTGATAT+GGG - chr1.3:16536412-16536431 MS.gene62990:CDS 25.0%
! AACGATTCACAGTTAATTAT+TGG - chr1.3:16533871-16533890 MS.gene62990:intron 25.0%
! AACTTAATTACGAAAGCAAA+TGG - chr1.3:16533608-16533627 MS.gene62990:intron 25.0%
! AATTCAGATTGAGTAAAAGA+TGG - chr1.3:16534212-16534231 MS.gene62990:intron 25.0%
! AATTCTTGACTTAATCATTG+AGG - chr1.3:16533483-16533502 MS.gene62990:intron 25.0%
! ACAATACATGTAGAAATTGA+AGG + chr1.3:16536232-16536251 None:intergenic 25.0%
! ATACCCTATCATAATATTTG+TGG - chr1.3:16533458-16533477 MS.gene62990:intron 25.0%
! GTTGTTGTGAAATCTATTAA+AGG + chr1.3:16534784-16534803 None:intergenic 25.0%
! TACCCACAAATATTATGATA+GGG + chr1.3:16533464-16533483 None:intergenic 25.0%
! TACCCTATCATAATATTTGT+GGG - chr1.3:16533459-16533478 MS.gene62990:intron 25.0%
! TAGAAATAAAAACAGTGTGT+TGG + chr1.3:16535430-16535449 None:intergenic 25.0%
! TAGATACAGTACATAAAATC+GGG - chr1.3:16536123-16536142 MS.gene62990:CDS 25.0%
! TGGTCATGTATAAAAATGAA+AGG + chr1.3:16534434-16534453 None:intergenic 25.0%
! TTAAAATGCCATTAAATGGA+CGG + chr1.3:16534950-16534969 None:intergenic 25.0%
! TTAACCTGTATCGTATTATT+CGG - chr1.3:16535307-16535326 MS.gene62990:intron 25.0%
! TTACCCACAAATATTATGAT+AGG + chr1.3:16533465-16533484 None:intergenic 25.0%
! TTCCTTGTATAGGTATTAAT+TGG - chr1.3:16534505-16534524 MS.gene62990:intron 25.0%
! TTTATTGAAACTGGAGAAAA+TGG + chr1.3:16535862-16535881 None:intergenic 25.0%
!! CAATTCAGTATCAATTTTGA+GGG + chr1.3:16536486-16536505 None:intergenic 25.0%
!! TCCATTTAATGGCATTTTAA+TGG - chr1.3:16534950-16534969 MS.gene62990:CDS 25.0%
!! TTTATCCTAAGAGAAGTTTT+AGG - chr1.3:16534045-16534064 MS.gene62990:intron 25.0%
!!! ACAGTTAATTATTGGTAATG+TGG - chr1.3:16533879-16533898 MS.gene62990:intron 25.0%
!!! AGTTAATTATTGGTAATGTG+GGG - chr1.3:16533881-16533900 MS.gene62990:intron 25.0%
!!! CAGTTAATTATTGGTAATGT+GGG - chr1.3:16533880-16533899 MS.gene62990:intron 25.0%
!!! TATTGTTGATTTCCTTGTAT+AGG - chr1.3:16534495-16534514 MS.gene62990:intron 25.0%
AAAAGTTAGTTAAGGTCAGT+TGG - chr1.3:16535720-16535739 MS.gene62990:intron 30.0%
AAATCATAAGTAGGATGCAA+AGG + chr1.3:16533059-16533078 None:intergenic 30.0%
AACAGACAGAAACAAAAACA+TGG + chr1.3:16535453-16535472 None:intergenic 30.0%
AACTTCTCTTAGGATAAATG+TGG + chr1.3:16534043-16534062 None:intergenic 30.0%
AGGTAATTCAAGGTTAAGAT+GGG + chr1.3:16534861-16534880 None:intergenic 30.0%
AGTAAGAGAGGATTATTAAG+AGG - chr1.3:16535745-16535764 MS.gene62990:intron 30.0%
ATAACATTGTTGTAGCTGAA+AGG - chr1.3:16533711-16533730 MS.gene62990:intron 30.0%
ATCTTCAGTTATTCATGTGT+AGG - chr1.3:16533680-16533699 MS.gene62990:intron 30.0%
ATGGTTGTACCTTTATCAAA+CGG - chr1.3:16535196-16535215 MS.gene62990:intron 30.0%
CACCAATTAATACCTATACA+AGG + chr1.3:16534510-16534529 None:intergenic 30.0%
CACTAATCTGACAAATTGTT+AGG + chr1.3:16534105-16534124 None:intergenic 30.0%
CATCCTACTTATGATTTGAA+GGG - chr1.3:16533062-16533081 MS.gene62990:CDS 30.0%
CATGAAACTAGAAGAAAGTT+TGG + chr1.3:16533137-16533156 None:intergenic 30.0%
CATTACAGCAGTATATTTCA+CGG + chr1.3:16535649-16535668 None:intergenic 30.0%
CCTCAAAATTGATACTGAAT+TGG - chr1.3:16536484-16536503 MS.gene62990:CDS 30.0%
CCTGTGAAAAAACATGATAT+AGG + chr1.3:16534309-16534328 None:intergenic 30.0%
CTTGTATAGGTATTAATTGG+TGG - chr1.3:16534508-16534527 MS.gene62990:intron 30.0%
GAATTGAAATGGTTAAAAGG+AGG - chr1.3:16533910-16533929 MS.gene62990:intron 30.0%
GATAATCATATATCAACAGC+TGG - chr1.3:16534577-16534596 MS.gene62990:intron 30.0%
GCCATTAAAATGCCATTAAA+TGG + chr1.3:16534954-16534973 None:intergenic 30.0%
GTAAGAGAGGATTATTAAGA+GGG - chr1.3:16535746-16535765 MS.gene62990:intron 30.0%
GTTAAATGCATTTGTAGATC+TGG - chr1.3:16535001-16535020 MS.gene62990:CDS 30.0%
TAAAACAGTGACTAAAGCAA+AGG + chr1.3:16536352-16536371 None:intergenic 30.0%
TAACATTGTTGTAGCTGAAA+GGG - chr1.3:16533712-16533731 MS.gene62990:intron 30.0%
TAAGAAACAAACAAGTCCAA+AGG + chr1.3:16535946-16535965 None:intergenic 30.0%
TAAGAGAGGATTATTAAGAG+GGG - chr1.3:16535747-16535766 MS.gene62990:intron 30.0%
TATAGGTGATATAACATGCT+TGG - chr1.3:16533301-16533320 MS.gene62990:intron 30.0%
TCGAATAATGCTGGATAATA+TGG - chr1.3:16535177-16535196 MS.gene62990:CDS 30.0%
TGATATCTTCAATTTGGTTG+AGG - chr1.3:16536011-16536030 MS.gene62990:intron 30.0%
TGCAGAGATGATATTTAATG+AGG - chr1.3:16533400-16533419 MS.gene62990:CDS 30.0%
TGGGGAATATTGAATTGAAA+TGG - chr1.3:16533899-16533918 MS.gene62990:intron 30.0%
TGGTGATTTCAGAAATCATT+AGG + chr1.3:16534258-16534277 None:intergenic 30.0%
TGTTTGTAAAGGTTCTTGTA+AGG - chr1.3:16533840-16533859 MS.gene62990:intron 30.0%
TTATCCAACAAACGTAAACA+CGG + chr1.3:16534385-16534404 None:intergenic 30.0%
TTCTTTAACTCGAATAATGC+TGG - chr1.3:16535168-16535187 MS.gene62990:CDS 30.0%
TTTCTCCTAAAACTTCTCTT+AGG + chr1.3:16534053-16534072 None:intergenic 30.0%
TTTGTCATATTTGTGAATCC+AGG - chr1.3:16536082-16536101 MS.gene62990:intron 30.0%
! CAGAGCAATGAAATTTTGTA+GGG + chr1.3:16536408-16536427 None:intergenic 30.0%
! CCAATTCAGTATCAATTTTG+AGG + chr1.3:16536487-16536506 None:intergenic 30.0%
! GTGAATTTGATAGTTTCTGT+TGG - chr1.3:16535785-16535804 MS.gene62990:CDS 30.0%
! TCAGAGCAATGAAATTTTGT+AGG + chr1.3:16536409-16536428 None:intergenic 30.0%
! TTGCTTCATACCTTTAAAGA+AGG + chr1.3:16533431-16533450 None:intergenic 30.0%
! TTTACGTTTGTTGGATAAGT+GGG - chr1.3:16534387-16534406 MS.gene62990:CDS 30.0%
! TTTTGTGAAGGAGAAATTCT+CGG - chr1.3:16535820-16535839 MS.gene62990:intron 30.0%
!! GAGGATTACTTTGAAATATC+AGG - chr1.3:16533502-16533521 MS.gene62990:intron 30.0%
!! GATTACTTTGAAATATCAGG+TGG - chr1.3:16533505-16533524 MS.gene62990:intron 30.0%
!! GTTTTTAGAAACTCACAAAC+CGG - chr1.3:16536374-16536393 MS.gene62990:intron 30.0%
!! TTTTAACTACCCTACAGATA+TGG + chr1.3:16534830-16534849 None:intergenic 30.0%
!!! CCTATATCATGTTTTTTCAC+AGG - chr1.3:16534306-16534325 MS.gene62990:CDS 30.0%
AAAATGGCTGCAATATAGAG+AGG + chr1.3:16534744-16534763 None:intergenic 35.0%
AAATGGCTGCAATATAGAGA+GGG + chr1.3:16534743-16534762 None:intergenic 35.0%
AAGACCGAATAATACGATAC+AGG + chr1.3:16535314-16535333 None:intergenic 35.0%
AAGCAAAGGAAGAATCAAAG+TGG + chr1.3:16536338-16536357 None:intergenic 35.0%
AATCATATATCAACAGCTGG+AGG - chr1.3:16534580-16534599 MS.gene62990:intron 35.0%
AATTTGACACGACCGTTATT+GGG - chr1.3:16535684-16535703 MS.gene62990:intron 35.0%
ACAATATTATATCTGCAGCC+AGG + chr1.3:16535066-16535085 None:intergenic 35.0%
AGCAAAGATGAGGTAATTCA+AGG + chr1.3:16534871-16534890 None:intergenic 35.0%
AGTTAGTTAAGAACGTGAAG+AGG + chr1.3:16536057-16536076 None:intergenic 35.0%
ATGAGTTTACACTCCAAATG+TGG - chr1.3:16535560-16535579 MS.gene62990:intron 35.0%
ATGCCCTTCAAATCATAAGT+AGG + chr1.3:16533068-16533087 None:intergenic 35.0%
CGTGAAATATACTGCTGTAA+TGG - chr1.3:16535647-16535666 MS.gene62990:intron 35.0%
CTACAGTTTGGAAAAGTTCA+TGG - chr1.3:16533566-16533585 MS.gene62990:intron 35.0%
CTAGTCTCCAATATATATGC+AGG + chr1.3:16534352-16534371 None:intergenic 35.0%
CTTCTTTCTTACCCCAATAA+CGG + chr1.3:16535699-16535718 None:intergenic 35.0%
GAAAAATAGCCTTCAATTGG+AGG - chr1.3:16534642-16534661 MS.gene62990:intron 35.0%
GAGGTAATTCAAGGTTAAGA+TGG + chr1.3:16534862-16534881 None:intergenic 35.0%
GCATCCTACTTATGATTTGA+AGG - chr1.3:16533061-16533080 MS.gene62990:CDS 35.0%
GCTATGCATCTTAAAGTGAT+TGG - chr1.3:16534972-16534991 MS.gene62990:CDS 35.0%
GGAGAAAAATAGCCTTCAAT+TGG - chr1.3:16534639-16534658 MS.gene62990:intron 35.0%
GTATAGGTATTAATTGGTGG+AGG - chr1.3:16534511-16534530 MS.gene62990:intron 35.0%
TAGATCTGGTGTTCTTGATA+TGG - chr1.3:16535015-16535034 MS.gene62990:intron 35.0%
TAGTGCTAAACTTTATGCAG+AGG - chr1.3:16533735-16533754 MS.gene62990:intron 35.0%
TCAACATCTCCGTTTGATAA+AGG + chr1.3:16535208-16535227 None:intergenic 35.0%
TCAGTTATTCATGTGTAGGA+CGG - chr1.3:16533684-16533703 MS.gene62990:intron 35.0%
TCTTTATTGAAGAGTAGCCT+CGG + chr1.3:16533993-16534012 None:intergenic 35.0%
TGGTTGTGTTATGTTTCATC+AGG - chr1.3:16534232-16534251 MS.gene62990:intron 35.0%
TTCCAAACTGTAGTCCTTTA+TGG + chr1.3:16533559-16533578 None:intergenic 35.0%
TTTGTGAAGGAGAAATTCTC+GGG - chr1.3:16535821-16535840 MS.gene62990:intron 35.0%
! ATACAGGTCAACAGCTTTTA+GGG + chr1.3:16534617-16534636 None:intergenic 35.0%
! ATTTTGTAGGGAAACAGTAC+CGG + chr1.3:16536396-16536415 None:intergenic 35.0%
! CTAGATTTTATGAAGTGCAG+TGG + chr1.3:16536189-16536208 None:intergenic 35.0%
! GATGGAGATTTTGTCCATAA+AGG - chr1.3:16533542-16533561 MS.gene62990:intron 35.0%
! GTTTACGTTTGTTGGATAAG+TGG - chr1.3:16534386-16534405 MS.gene62990:CDS 35.0%
! TAGAATGGGTTTGTTTGACA+TGG - chr1.3:16534543-16534562 MS.gene62990:intron 35.0%
! TCAAAGTGGATTCCAACATA+TGG + chr1.3:16536324-16536343 None:intergenic 35.0%
! TGAGGTTGATCCTTCTTTAA+AGG - chr1.3:16533418-16533437 MS.gene62990:intron 35.0%
! TGTCAAATTGATGACAACCA+AGG + chr1.3:16535673-16535692 None:intergenic 35.0%
!! AAAGCTTTGTTAGGCAGTTA+AGG + chr1.3:16534895-16534914 None:intergenic 35.0%
!! AAGCTTTAAGAAATGGACAG+TGG + chr1.3:16535912-16535931 None:intergenic 35.0%
!! AGAGAGGAAGCTTTAAGAAA+TGG + chr1.3:16535919-16535938 None:intergenic 35.0%
!!! TCATGTTTTTTCACAGGCAA+TGG - chr1.3:16534312-16534331 MS.gene62990:CDS 35.0%
AAAAGCTGTTGACCTGTATC+TGG - chr1.3:16534618-16534637 MS.gene62990:intron 40.0%
AACTTTATGCAGAGGATGAG+TGG - chr1.3:16533743-16533762 MS.gene62990:intron 40.0%
AATGTTGACCTCAAGACATG+CGG + chr1.3:16535587-16535606 None:intergenic 40.0%
AATTGGCGCTTAAAGTTGGA+AGG - chr1.3:16536501-16536520 MS.gene62990:CDS 40.0%
ACTGAATTGGCGCTTAAAGT+TGG - chr1.3:16536497-16536516 MS.gene62990:CDS 40.0%
AGCATCGCCTGCATATATAT+TGG - chr1.3:16534342-16534361 MS.gene62990:CDS 40.0%
ATATACTGCTGTAATGGCCT+TGG - chr1.3:16535653-16535672 MS.gene62990:intron 40.0%
ATCTGGTGTTCTTGATATGG+CGG - chr1.3:16535018-16535037 MS.gene62990:intron 40.0%
ATGTCTGTCCGTCCATTTAA+TGG - chr1.3:16534939-16534958 MS.gene62990:CDS 40.0%
ATTTGACACGACCGTTATTG+GGG - chr1.3:16535685-16535704 MS.gene62990:intron 40.0%
CAAGTCCAAAGGAAAAAGAG+AGG + chr1.3:16535935-16535954 None:intergenic 40.0%
CAATTTGACACGACCGTTAT+TGG - chr1.3:16535683-16535702 MS.gene62990:intron 40.0%
CAGTTAAGGAAGCAAAGATG+AGG + chr1.3:16534881-16534900 None:intergenic 40.0%
CAGTTATTCATGTGTAGGAC+GGG - chr1.3:16533685-16533704 MS.gene62990:intron 40.0%
CCTTAGAAAGAATGCGTGAA+AGG + chr1.3:16534690-16534709 None:intergenic 40.0%
CCTTTCACGCATTCTTTCTA+AGG - chr1.3:16534687-16534706 MS.gene62990:intron 40.0%
CGTTATTGGGGTAAGAAAGA+AGG - chr1.3:16535697-16535716 MS.gene62990:intron 40.0%
GACTTCCATGTCAAATGGAA+TGG + chr1.3:16533330-16533349 None:intergenic 40.0%
GCACAACTGGATCAGATAAA+AGG + chr1.3:16534021-16534040 None:intergenic 40.0%
GGAGGACGAAATCATAGAAT+GGG - chr1.3:16534529-16534548 MS.gene62990:intron 40.0%
GGATTATTAAGAGGGGATGT+AGG - chr1.3:16535754-16535773 MS.gene62990:CDS 40.0%
GTACATAAAATCGGGCAAAG+TGG - chr1.3:16536131-16536150 MS.gene62990:CDS 40.0%
GTCCATAAAGGACTACAGTT+TGG - chr1.3:16533554-16533573 MS.gene62990:intron 40.0%
GTGGAGTAACCTACATTTCT+AGG - chr1.3:16536150-16536169 MS.gene62990:CDS 40.0%
GTGGAGTGGTCTAAAAATGA+TGG - chr1.3:16533524-16533543 MS.gene62990:intron 40.0%
TAGGATAAATGTGGCACAAC+TGG + chr1.3:16534034-16534053 None:intergenic 40.0%
TATTTGTGAATCCAGGCTTC+AGG - chr1.3:16536089-16536108 MS.gene62990:intron 40.0%
TCATAAGTAGGATGCAAAGG+AGG + chr1.3:16533056-16533075 None:intergenic 40.0%
TCCTACTTGCCATATCTGTA+GGG - chr1.3:16534818-16534837 MS.gene62990:intron 40.0%
TGGAGGACGAAATCATAGAA+TGG - chr1.3:16534528-16534547 MS.gene62990:intron 40.0%
TGGCATTGCAACTTTAACCA+AGG - chr1.3:16533763-16533782 MS.gene62990:intron 40.0%
TTCCATGTCAAATGGAATGG+TGG + chr1.3:16533327-16533346 None:intergenic 40.0%
TTGTGAAGGAGAAATTCTCG+GGG - chr1.3:16535822-16535841 MS.gene62990:intron 40.0%
! AGCTTCCTCTCTTTTTCCTT+TGG - chr1.3:16535927-16535946 MS.gene62990:intron 40.0%
! CAATGGGAGATTTGAAACTG+AGG - chr1.3:16535261-16535280 MS.gene62990:intron 40.0%
! GAAACTGAGGTATTCATGAC+TGG - chr1.3:16535274-16535293 MS.gene62990:intron 40.0%
! GATACAGGTCAACAGCTTTT+AGG + chr1.3:16534618-16534637 None:intergenic 40.0%
! GGAAGTCGAAGCTTATTTCT+TGG - chr1.3:16533343-16533362 MS.gene62990:intron 40.0%
! GTAAGTTTGTGTTTTTCCCC+AGG - chr1.3:16535084-16535103 MS.gene62990:intron 40.0%
! GTTCTGTTTCTCTTGGATAC+TGG - chr1.3:16533967-16533986 MS.gene62990:intron 40.0%
!! ACATCTGGTTCTGTTTCTCT+TGG - chr1.3:16533960-16533979 MS.gene62990:intron 40.0%
!! CTTTGAAATATCAGGTGGAG+TGG - chr1.3:16533510-16533529 MS.gene62990:intron 40.0%
!!! GGCTATTTTTCTCCAGATAC+AGG + chr1.3:16534633-16534652 None:intergenic 40.0%
AAGAGTCCTAGTCTCAACCT+GGG + chr1.3:16535104-16535123 None:intergenic 45.0%
AAGGACTCGTATGAGATCGT+CGG + chr1.3:16533023-16533042 None:intergenic 45.0%
AATGCAGCATTCCTGACATC+TGG - chr1.3:16533945-16533964 MS.gene62990:intron 45.0%
ACAGATATGGCAAGTAGGAG+TGG + chr1.3:16534817-16534836 None:intergenic 45.0%
ACCCTACAGATATGGCAAGT+AGG + chr1.3:16534822-16534841 None:intergenic 45.0%
ATGTCAGGAATGCTGCATTG+AGG + chr1.3:16533944-16533963 None:intergenic 45.0%
ATGTTGACCTCAAGACATGC+GGG + chr1.3:16535586-16535605 None:intergenic 45.0%
CTACCTCAACCTCCAATTGA+AGG + chr1.3:16534654-16534673 None:intergenic 45.0%
CTATGCTGAAAGAAGCTGTG+CGG - chr1.3:16535233-16535252 MS.gene62990:intron 45.0%
CTCCTACTTGCCATATCTGT+AGG - chr1.3:16534817-16534836 MS.gene62990:intron 45.0%
GAGAAACAGAACCAGATGTC+AGG + chr1.3:16533959-16533978 None:intergenic 45.0%
GCTTCGACTTCCATGTCAAA+TGG + chr1.3:16533335-16533354 None:intergenic 45.0%
GGTCAGTTGGTTAGTAAGAG+AGG - chr1.3:16535733-16535752 MS.gene62990:intron 45.0%
TAGCCTTCAATTGGAGGTTG+AGG - chr1.3:16534648-16534667 MS.gene62990:intron 45.0%
TAGTAACATTGCCTGAAGCC+TGG + chr1.3:16536103-16536122 None:intergenic 45.0%
TATTTCTTGGCGAAGGAGGA+TGG - chr1.3:16533356-16533375 MS.gene62990:intron 45.0%
TGCTCCGTGTTTACGTTTGT+TGG - chr1.3:16534378-16534397 MS.gene62990:CDS 45.0%
TGCTGGTAAACAACTAGTCC+TGG - chr1.3:16535045-16535064 MS.gene62990:intron 45.0%
TTGCTCTTGCAGAAGATGCT+GGG - chr1.3:16533096-16533115 MS.gene62990:intron 45.0%
! ACGTTTGTTGGATAAGTGGG+CGG - chr1.3:16534390-16534409 MS.gene62990:CDS 45.0%
! AGCTTATTTCTTGGCGAAGG+AGG - chr1.3:16533352-16533371 MS.gene62990:intron 45.0%
! CGAAGCTTATTTCTTGGCGA+AGG - chr1.3:16533349-16533368 MS.gene62990:intron 45.0%
! CTGATATGGGTTTTCTGCAG+TGG - chr1.3:16536425-16536444 MS.gene62990:CDS 45.0%
!! GGACTAGTTGTTTACCAGCA+TGG + chr1.3:16535045-16535064 None:intergenic 45.0%
!! TTTTTCCCCAGGTTGAGACT+AGG - chr1.3:16535095-16535114 MS.gene62990:intron 45.0%
AGAGTCCTAGTCTCAACCTG+GGG + chr1.3:16535103-16535122 None:intergenic 50.0%
CAAAGGAGGCTTTACTGCGA+AGG + chr1.3:16533042-16533061 None:intergenic 50.0%
CAAGAGTCCTAGTCTCAACC+TGG + chr1.3:16535105-16535124 None:intergenic 50.0%
CTTGCTCTTGCAGAAGATGC+TGG - chr1.3:16533095-16533114 MS.gene62990:intron 50.0%
GACTAGGACTCTTGAGGAAG+TGG - chr1.3:16535111-16535130 MS.gene62990:intron 50.0%
GATATGGCAAGTAGGAGTGG+AGG + chr1.3:16534814-16534833 None:intergenic 50.0%
GGCCACCATTCCATTTGACA+TGG - chr1.3:16533322-16533341 MS.gene62990:intron 50.0%
GGTTGAGACTAGGACTCTTG+AGG - chr1.3:16535105-16535124 MS.gene62990:intron 50.0%
TGCTCTTGCAGAAGATGCTG+GGG - chr1.3:16533097-16533116 MS.gene62990:intron 50.0%
TTTCTCTTGGATACTGGCCG+AGG - chr1.3:16533973-16533992 MS.gene62990:intron 50.0%
! AAGCTGTGCGGTTGGTCAAT+GGG - chr1.3:16535245-16535264 MS.gene62990:intron 50.0%
! CTTAAAGTTGGAAGGCGCAC+CGG - chr1.3:16536509-16536528 MS.gene62990:CDS 50.0%
AAGGAGGATGGCATCGTTGC+TGG - chr1.3:16533368-16533387 MS.gene62990:CDS 55.0%
AATGTGGCCCGCATGTCTTG+AGG - chr1.3:16535576-16535595 MS.gene62990:intron 55.0%
ATGGCAAGTAGGAGTGGAGG+AGG + chr1.3:16534811-16534830 None:intergenic 55.0%
CAAGACATGCGGGCCACATT+TGG + chr1.3:16535576-16535595 None:intergenic 55.0%
CTTGATATGGCGGTCCATGC+TGG - chr1.3:16535028-16535047 MS.gene62990:intron 55.0%
GCAGAAGATGCTGGGGATCT+AGG - chr1.3:16533104-16533123 MS.gene62990:intron 55.0%
GCTGAAAGAAGCTGTGCGGT+TGG - chr1.3:16535237-16535256 MS.gene62990:intron 55.0%
TGGCAAGTAGGAGTGGAGGA+GGG + chr1.3:16534810-16534829 None:intergenic 55.0%
! GAAGCTGTGCGGTTGGTCAA+TGG - chr1.3:16535244-16535263 MS.gene62990:intron 55.0%
GCAAGTAGGAGTGGAGGAGG+GGG + chr1.3:16534808-16534827 None:intergenic 60.0%
GGCAAGTAGGAGTGGAGGAG+GGG + chr1.3:16534809-16534828 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 16532996 16536541 16532996 ID=MS.gene62990
chr1.3 mRNA 16532996 16536541 16532996 ID=MS.gene62990.t1;Parent=MS.gene62990
chr1.3 exon 16536412 16536541 16536412 ID=MS.gene62990.t1.exon1;Parent=MS.gene62990.t1
chr1.3 CDS 16536412 16536541 16536412 ID=cds.MS.gene62990.t1;Parent=MS.gene62990.t1
chr1.3 exon 16536098 16536231 16536098 ID=MS.gene62990.t1.exon2;Parent=MS.gene62990.t1
chr1.3 CDS 16536098 16536231 16536098 ID=cds.MS.gene62990.t1;Parent=MS.gene62990.t1
chr1.3 exon 16535950 16536013 16535950 ID=MS.gene62990.t1.exon3;Parent=MS.gene62990.t1
chr1.3 CDS 16535950 16536013 16535950 ID=cds.MS.gene62990.t1;Parent=MS.gene62990.t1
chr1.3 exon 16535753 16535835 16535753 ID=MS.gene62990.t1.exon4;Parent=MS.gene62990.t1
chr1.3 CDS 16535753 16535835 16535753 ID=cds.MS.gene62990.t1;Parent=MS.gene62990.t1
chr1.3 exon 16535126 16535209 16535126 ID=MS.gene62990.t1.exon5;Parent=MS.gene62990.t1
chr1.3 CDS 16535126 16535209 16535126 ID=cds.MS.gene62990.t1;Parent=MS.gene62990.t1
chr1.3 exon 16534868 16535020 16534868 ID=MS.gene62990.t1.exon6;Parent=MS.gene62990.t1
chr1.3 CDS 16534868 16535020 16534868 ID=cds.MS.gene62990.t1;Parent=MS.gene62990.t1
chr1.3 exon 16534255 16534431 16534255 ID=MS.gene62990.t1.exon7;Parent=MS.gene62990.t1
chr1.3 CDS 16534255 16534431 16534255 ID=cds.MS.gene62990.t1;Parent=MS.gene62990.t1
chr1.3 exon 16533366 16533433 16533366 ID=MS.gene62990.t1.exon8;Parent=MS.gene62990.t1
chr1.3 CDS 16533366 16533433 16533366 ID=cds.MS.gene62990.t1;Parent=MS.gene62990.t1
chr1.3 exon 16532996 16533092 16532996 ID=MS.gene62990.t1.exon9;Parent=MS.gene62990.t1
chr1.3 CDS 16532996 16533092 16532996 ID=cds.MS.gene62990.t1;Parent=MS.gene62990.t1
Gene Sequence

>MS.gene62990

ATGTCTGCAACTGAAGTCACAAATCCGACGATCTCATACGAGTCCTTCGCAGTAAAGCCTCCTTTGCATCCTACTTATGATTTGAAGGGCATTATAAAGCTTGCTCTTGCAGAAGATGCTGGGGATCTAGGTTTACGTCCAAACTTTCTTCTAGTTTCATGCTATAGATGTCTTGTTTCTTTCTGAGTTTTATTTTTATTATTTCTATATTTTTTCTTTACTAAATAATCAGTATACTGTTTGTGCTATTTTATTTATGTGACAGTTATATTGTGTGCATGACATTGAATAAGAAATGTTTTGACTATAGGTGATATAACATGCTTGGCCACCATTCCATTTGACATGGAAGTCGAAGCTTATTTCTTGGCGAAGGAGGATGGCATCGTTGCTGGAATTGCACTTGCAGAGATGATATTTAATGAGGTTGATCCTTCTTTAAAGGTATGAAGCAATGAGCATATACCCTATCATAATATTTGTGGGTAATTCTTGACTTAATCATTGAGGATTACTTTGAAATATCAGGTGGAGTGGTCTAAAAATGATGGAGATTTTGTCCATAAAGGACTACAGTTTGGAAAAGTTCATGGTAAGATAATTTATTATTAAAACTTAATTACGAAAGCAAATGGAATTAAGTACGTTGTTAGTTTTTAATTGATTTATGAAAGGCTTCTATCAATCTTCAGTTATTCATGTGTAGGACGGGCACATAACATTGTTGTAGCTGAAAGGGTAGTGCTAAACTTTATGCAGAGGATGAGTGGCATTGCAACTTTAACCAAGGTATTTTTATTTTCTTAATATTTTTACTGTTTTCTTCAAAATTAATATTGTATGATGTTTGTAAAGGTTCTTGTAAGGCTATTGAGAACGATTCACAGTTAATTATTGGTAATGTGGGGAATATTGAATTGAAATGGTTAAAAGGAGGAAGAGAGTCCTCAATGCAGCATTCCTGACATCTGGTTCTGTTTCTCTTGGATACTGGCCGAGGCTACTCTTCAATAAAGATTCATCCTTTTATCTGATCCAGTTGTGCCACATTTATCCTAAGAGAAGTTTTAGGAGAAACTTTTCAAGTTGAAATATAACACATGACACCTAACAATTTGTCAGATTAGTGATGATTATATTGCCTCATTCATTTTTTTTATCAATATAATAATGAACAAATCACGGTTACAAATAAGAAAAGTTGATTTATGTAATGAATTCAGATTGAGTAAAAGATGGTTGTGTTATGTTTCATCAGGCCTAATGATTTCTGAAATCACCATTGTTATCTTATATTTATCATTTGTTTTCCTATATCATGTTTTTTCACAGGCAATGGCAAATGCAGCATCGCCTGCATATATATTGGAGACTAGAAAAACTGCTCCGTGTTTACGTTTGTTGGATAAGTGGGCGGTCTGCACTCTGAACCATTCCTTTCATTTTTATACATGACCATTTATTTATATTTTTTTATATATCAAATTTTCTCAATAAACTATTGTTGATTTCCTTGTATAGGTATTAATTGGTGGAGGACGAAATCATAGAATGGGTTTGTTTGACATGGTTATGATAAAAGATAATCATATATCAACAGCTGGAGGTGTTACAAATGCCCTAAAAGCTGTTGACCTGTATCTGGAGAAAAATAGCCTTCAATTGGAGGTTGAGGTAGTACTCTCTTTCATCCTTTCACGCATTCTTTCTAAGGCCCTGATTCTTAATGAATAATTTTCTCAATCCCTCTCTATATTGCAGCCATTTTTATTTTATTTTTTATTCCCTTTAATAGATTTCACAACAACTCCCCCTCCTCCACTCCTACTTGCCATATCTGTAGGGTAGTTAAAACTTAAATTCCCATCTTAACCTTGAATTACCTCATCTTTGCTTCCTTAACTGCCTAACAAAGCTTTATATAATTGGTCATATTCATTTACATGTCTGTCCGTCCATTTAATGGCATTTTAATGGCTATGCATCTTAAAGTGATTGGCATGAAGTTAAATGCATTTGTAGATCTGGTGTTCTTGATATGGCGGTCCATGCTGGTAAACAACTAGTCCTGGCTGCAGATATAATATTGTAAGTTTGTGTTTTTCCCCAGGTTGAGACTAGGACTCTTGAGGAAGTGGAAGAAGTATTACAGTATGCATCTCAAACAAAGACTTCTTTAACTCGAATAATGCTGGATAATATGGTTGTACCTTTATCAAACGGAGATGTTGACATATCTATGCTGAAAGAAGCTGTGCGGTTGGTCAATGGGAGATTTGAAACTGAGGTATTCATGACTGGATTTGCTTCTTTAACCTGTATCGTATTATTCGGTCTTTTGTTGACTAAATGATTCAGAGTATGATTAAATTAGTCATTTACGATCAAAAACATGAAGAGCACAACGAACATTCTCTCGAAGATTGTCTTTCCAACACACTGTTTTTATTTCTACCATGTTTTTGTTTCTGTCTGTTTAGAAACTAGCAAGTGTGTGCTTTGTTGTGCAAGCTTCTACAGAAATGAAATACTGTTCAGAAATATGTAAAGCATATTTTAAAATTATGAGTTTACACTCCAAATGTGGCCCGCATGTCTTGAGGTCAACATTCTATACAATAAACTAATTTTGTAATGAACTCGAAGCATGCCGTGAAATATACTGCTGTAATGGCCTTGGTTGTCATCAATTTGACACGACCGTTATTGGGGTAAGAAAGAAGGAAAAGTTAGTTAAGGTCAGTTGGTTAGTAAGAGAGGATTATTAAGAGGGGATGTAGGATCATTCTGTGAATTTGATAGTTTCTGTTGGAAAATAGAAATTTTTTGTGAAGGAGAAATTCTCGGGGAGAATGTTAATTCTCCATTTTCTCCAGTTTCAATAAAAACACTTATTTTATTAATTCTTTCTCGCCACTGTCCATTTCTTAAAGCTTCCTCTCTTTTTCCTTTGGACTTGTTTGTTTCTTACATTATCTAATCGTTTTTTTATTTGGTAAATTTCAGACGTTATTTTGATATCTTCAATTTGGTTGAGGATGACTTTGTTAAATAACTTCCTCTTCACGTTCTTAACTAACTTCTATTTTGTCATATTTGTGAATCCAGGCTTCAGGCAATGTTACTATAGATACAGTACATAAAATCGGGCAAAGTGGAGTAACCTACATTTCTAGGTAAAGTTTTTCTTCCACTGCACTTCATAAAATCTAGTATCATAAAACATAATTTTTCCTTCAATTTCTACATGTATTGTTGAAAAATGCATTGTCGATTAATGTTAGAAATCTCATCATTAAATATATTGCTCTCATAATATTATAAACCATATGTTGGAATCCACTTTGATTCTTCCTTTGCTTTAGTCACTGTTTTAATGTTTTTAGAAACTCACAAACCGGTACTGTTTCCCTACAAAATTTCATTGCTCTGATATGGGTTTTCTGCAGTGGTTCTTTGACTCACTCAGTGAAAGCACTTGACATCTCCCTCAAAATTGATACTGAATTGGCGCTTAAAGTTGGAAGGCGCACCGGAAGAGCTTGA

Protein sequence

>MS.gene62990.t1

MSATEVTNPTISYESFAVKPPLHPTYDLKGIIKLALAEDAGDLGDITCLATIPFDMEVEAYFLAKEDGIVAGIALAEMIFNEVDPSLKVEWSKNDGDFVHKGLQFGKVHGRAHNIVVAERVVLNFMQRMSGIATLTKAMANAASPAYILETRKTAPCLRLLDKWAVLIGGGRNHRMGLFDMVMIKDNHISTAGGVTNALKAVDLYLEKNSLQLEVEVETRTLEEVEEVLQYASQTKTSLTRIMLDNMVVPLSNGDVDISMLKEAVRLVNGRFETEASGNVTIDTVHKIGQSGVTYISSGSLTHSVKALDISLKIDTELALKVGRRTGRA