Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63165.t1 | XP_003603098.1 | 96 | 322 | 13 | 0 | 1 | 322 | 1 | 322 | 7.30E-174 | 619.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63165.t1 | Q8GXG1 | 83.7 | 325 | 50 | 1 | 1 | 322 | 1 | 325 | 1.4e-154 | 547.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63165.t1 | G7J705 | 96.0 | 322 | 13 | 0 | 1 | 322 | 1 | 322 | 5.2e-174 | 619.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene03345 | MS.gene63165 | PPI |
| MS.gene63165 | MS.gene033041 | PPI |
| MS.gene033042 | MS.gene63165 | PPI |
| MS.gene63165 | MS.gene063515 | PPI |
| MS.gene63165 | MS.gene044476 | PPI |
| MS.gene63165 | MS.gene063514 | PPI |
| MS.gene63165 | MS.gene038825 | PPI |
| MS.gene63165 | MS.gene044475 | PPI |
| MS.gene63165 | MS.gene038824 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63165.t1 | MTR_3g102370 | 95.963 | 322 | 13 | 0 | 1 | 322 | 1 | 322 | 0.0 | 633 |
| MS.gene63165.t1 | MTR_1g094030 | 87.267 | 322 | 39 | 1 | 1 | 322 | 1 | 320 | 0.0 | 577 |
| MS.gene63165.t1 | MTR_1g018760 | 85.846 | 325 | 43 | 2 | 1 | 322 | 1 | 325 | 0.0 | 566 |
| MS.gene63165.t1 | MTR_4g109900 | 58.255 | 321 | 126 | 2 | 3 | 320 | 2 | 317 | 7.56e-127 | 365 |
| MS.gene63165.t1 | MTR_4g109920 | 57.321 | 321 | 130 | 3 | 3 | 320 | 2 | 318 | 4.17e-124 | 358 |
| MS.gene63165.t1 | MTR_8g031580 | 29.316 | 307 | 170 | 7 | 6 | 277 | 23 | 317 | 8.08e-27 | 108 |
| MS.gene63165.t1 | MTR_8g031580 | 30.097 | 309 | 165 | 8 | 6 | 277 | 23 | 317 | 2.41e-26 | 108 |
| MS.gene63165.t1 | MTR_3g008180 | 28.514 | 249 | 152 | 7 | 67 | 293 | 77 | 321 | 3.95e-16 | 78.6 |
| MS.gene63165.t1 | MTR_8g031580 | 27.706 | 231 | 118 | 7 | 85 | 278 | 1 | 219 | 3.03e-12 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63165.t1 | AT3G16150 | 83.692 | 325 | 50 | 1 | 1 | 322 | 1 | 325 | 0.0 | 558 |
| MS.gene63165.t1 | AT5G08100 | 57.276 | 323 | 123 | 3 | 1 | 320 | 1 | 311 | 1.41e-124 | 359 |
| MS.gene63165.t1 | AT5G08100 | 56.790 | 243 | 91 | 2 | 80 | 320 | 1 | 231 | 1.25e-91 | 273 |
| MS.gene63165.t1 | AT4G00590 | 27.329 | 322 | 173 | 8 | 6 | 282 | 15 | 320 | 5.06e-21 | 93.2 |
| MS.gene63165.t1 | AT5G61540 | 28.947 | 266 | 150 | 9 | 67 | 300 | 80 | 338 | 8.76e-18 | 83.6 |
| MS.gene63165.t1 | AT4G00590 | 26.603 | 312 | 173 | 8 | 6 | 282 | 15 | 305 | 2.94e-17 | 82.0 |
| MS.gene63165.t1 | AT5G61540 | 29.167 | 240 | 131 | 9 | 93 | 300 | 4 | 236 | 1.35e-14 | 72.8 |
| MS.gene63165.t1 | AT5G61540 | 29.167 | 240 | 131 | 9 | 93 | 300 | 4 | 236 | 1.35e-14 | 72.8 |
Find 92 sgRNAs with CRISPR-Local
Find 123 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATAAGCCACTTCACCCTTAT+TGG | 0.146841 | 8.4:-40625979 | None:intergenic |
| GTTCACGGAGGTTGGAATTT+TGG | 0.166963 | 8.4:+40626049 | MS.gene63165:CDS |
| TCAATTGTAATGGAATGTTT+AGG | 0.266625 | 8.4:+40626006 | MS.gene63165:CDS |
| CAATTGTAATGGAATGTTTA+GGG | 0.287602 | 8.4:+40626007 | MS.gene63165:CDS |
| AATAAGGGTGAAGTGGCTTA+TGG | 0.296657 | 8.4:+40625981 | MS.gene63165:CDS |
| GGTTGGGCCATTGCTGTTCA+TGG | 0.306024 | 8.4:+40624690 | MS.gene63165:CDS |
| CGTCTTGATGAAGGGTTTGC+TGG | 0.320904 | 8.4:+40625942 | MS.gene63165:CDS |
| TCTTATTGCTGTGTCCAATA+AGG | 0.346186 | 8.4:+40625965 | MS.gene63165:CDS |
| TGTGCTGCTGCAACCTCAAC+TGG | 0.368919 | 8.4:+40625717 | MS.gene63165:CDS |
| TGACGGTGTGTTGGAAGATT+AGG | 0.377061 | 8.4:-40624729 | None:intergenic |
| AAAGGAAGCTAATACAATAT+TGG | 0.379155 | 8.4:+40625458 | MS.gene63165:CDS |
| AGAAGATGTGGTGCTGTATC+TGG | 0.390803 | 8.4:+40625172 | MS.gene63165:CDS |
| TTTCAGCATACCAACATTAT+CGG | 0.395803 | 8.4:-40625430 | None:intergenic |
| AGGGGATGTGCAACTGAGAA+TGG | 0.403815 | 8.4:+40626026 | MS.gene63165:CDS |
| AGCAAAAGGAACGGTGGAAA+TGG | 0.416209 | 8.4:+40625123 | MS.gene63165:CDS |
| ACATTCGGTAAGAAGCTGTT+TGG | 0.418583 | 8.4:-40624760 | None:intergenic |
| GCTTATGGGTTCAATTGTAA+TGG | 0.420402 | 8.4:+40625996 | MS.gene63165:CDS |
| GTTATGGAGTACAAAGACTA+TGG | 0.421674 | 8.4:+40625885 | MS.gene63165:CDS |
| ATAAGGGTGAAGTGGCTTAT+GGG | 0.422425 | 8.4:+40625982 | MS.gene63165:CDS |
| ATTGCTGTTCATGGCGGCGC+AGG | 0.424510 | 8.4:+40624699 | MS.gene63165:CDS |
| CTTACCGAATGTCTCAATCT+TGG | 0.425909 | 8.4:+40624771 | MS.gene63165:CDS |
| CATTCTTACCTCGCCTTCTC+CGG | 0.431764 | 8.4:+40625253 | MS.gene63165:CDS |
| ACAAGACGAGCAAGAGAGAT+TGG | 0.433669 | 8.4:-40625214 | None:intergenic |
| CTTATTGCTGTGTCCAATAA+GGG | 0.458493 | 8.4:+40625966 | MS.gene63165:CDS |
| TTCAGCATACCAACATTATC+GGG | 0.458771 | 8.4:-40625429 | None:intergenic |
| GGATCTGCTCTGACAGCAAA+AGG | 0.463031 | 8.4:+40625109 | MS.gene63165:CDS |
| ATTAAGCATCGTCTTGATGA+AGG | 0.463221 | 8.4:+40625933 | MS.gene63165:CDS |
| AACAAAATGAGTGGTCGAAT+CGG | 0.464428 | 8.4:+40625750 | MS.gene63165:CDS |
| GACGTCGAGTGCAGAAGCAT+TGG | 0.465190 | 8.4:-40624811 | None:intergenic |
| AGAAGAATTTGCTAGGGAAC+AGG | 0.465537 | 8.4:+40625279 | MS.gene63165:CDS |
| ACCACACATCCGACGGTCTC+CGG | 0.480495 | 8.4:-40625675 | None:intergenic |
| GAGAATGGGTTCACGGAGGT+TGG | 0.481454 | 8.4:+40626041 | MS.gene63165:CDS |
| TAATCTTCCAACACACCGTC+AGG | 0.481716 | 8.4:+40624731 | MS.gene63165:CDS |
| CTCTCTTGCTCGTCTTGTCA+TGG | 0.483008 | 8.4:+40625219 | MS.gene63165:CDS |
| ACGTGAAGTGGCTGCAGTTA+TGG | 0.491646 | 8.4:+40625869 | MS.gene63165:CDS |
| AAATTCTTCTGCACCGGAGA+AGG | 0.500532 | 8.4:-40625266 | None:intergenic |
| ATCGGTGATTCACCTCTCAT+AGG | 0.503828 | 8.4:+40625768 | MS.gene63165:CDS |
| GTTCATTAGCCCTCCAGTTG+AGG | 0.507804 | 8.4:-40625730 | None:intergenic |
| GATAGTCCAGTGAAAATGAA+TGG | 0.507847 | 8.4:+40625630 | MS.gene63165:CDS |
| GATTCACCTCTCATAGGTGC+TGG | 0.508182 | 8.4:+40625774 | MS.gene63165:CDS |
| CCTAGCAAATTCTTCTGCAC+CGG | 0.509592 | 8.4:-40625272 | None:intergenic |
| GCTTCTTCCTGACGGTGTGT+TGG | 0.511337 | 8.4:-40624738 | None:intergenic |
| GTGTGTGGAGTTTCTTGCAC+TGG | 0.514229 | 8.4:+40625813 | MS.gene63165:CDS |
| GGGGATGTGCAACTGAGAAT+GGG | 0.515436 | 8.4:+40626027 | MS.gene63165:CDS |
| TACAGCACCACATCTTCTCT+TGG | 0.525365 | 8.4:-40625167 | None:intergenic |
| TGCAACTGAGAATGGGTTCA+CGG | 0.529891 | 8.4:+40626034 | MS.gene63165:CDS |
| GGAGTTTCTTGCACTGGTGA+AGG | 0.536295 | 8.4:+40625819 | MS.gene63165:CDS |
| GGAAATGGAGGCTAGTATCA+TGG | 0.537266 | 8.4:+40625138 | MS.gene63165:CDS |
| GATACCAAGATTGAGACATT+CGG | 0.538052 | 8.4:-40624775 | None:intergenic |
| CCGGTGCAGAAGAATTTGCT+AGG | 0.539891 | 8.4:+40625272 | MS.gene63165:CDS |
| GACCGTCGGATGTGTGGTGG+TGG | 0.541481 | 8.4:+40625680 | MS.gene63165:CDS |
| GCTGTTTGGCTTCTTCCTGA+CGG | 0.552502 | 8.4:-40624746 | None:intergenic |
| TGGCACTCTTGCACGTGAAG+TGG | 0.556232 | 8.4:+40625857 | MS.gene63165:CDS |
| TTCATCACTCCCGATAATGT+TGG | 0.557667 | 8.4:+40625420 | MS.gene63165:CDS |
| AATTGTAATGGAATGTTTAG+GGG | 0.558475 | 8.4:+40626008 | MS.gene63165:CDS |
| GAGAAGGCGAGGTAAGAATG+AGG | 0.562126 | 8.4:-40625250 | None:intergenic |
| CCACGGCCAGAATTCAAAAG+TGG | 0.564240 | 8.4:-40625088 | None:intergenic |
| TGCGCCGCCATGAACAGCAA+TGG | 0.567462 | 8.4:-40624697 | None:intergenic |
| GTTTGATTATCGAATTCCAA+CGG | 0.581762 | 8.4:+40625590 | MS.gene63165:intron |
| GCCGGAGACCGTCGGATGTG+TGG | 0.582295 | 8.4:+40625674 | MS.gene63165:CDS |
| GAAGGTGAAGCTATCATTCG+TGG | 0.583136 | 8.4:+40625837 | MS.gene63165:CDS |
| CTATGGACTTCAACAAGCTG+TGG | 0.585085 | 8.4:+40625902 | MS.gene63165:CDS |
| TGTTCATGGCGGCGCAGGTG+TGG | 0.589949 | 8.4:+40624704 | MS.gene63165:CDS |
| GCCGATGAGCATTTACGCGC+CGG | 0.592527 | 8.4:+40625656 | MS.gene63165:CDS |
| AGAAGGCGAGGTAAGAATGA+GGG | 0.593655 | 8.4:-40625249 | None:intergenic |
| TTAAGCATCGTCTTGATGAA+GGG | 0.596066 | 8.4:+40625934 | MS.gene63165:CDS |
| TTGCTGTCAGAGCAGATCCA+CGG | 0.605965 | 8.4:-40625105 | None:intergenic |
| GCTGCTGCAACCTCAACTGG+AGG | 0.606206 | 8.4:+40625720 | MS.gene63165:CDS |
| TGCTCTGACAGCAAAAGGAA+CGG | 0.607232 | 8.4:+40625114 | MS.gene63165:CDS |
| TTTCTAGGGCGTGGAGACTG+AGG | 0.612061 | 8.4:+40625386 | MS.gene63165:intron |
| GTCCACCACCACACATCCGA+CGG | 0.619811 | 8.4:-40625682 | None:intergenic |
| AAAAGGAACGGTGGAAATGG+AGG | 0.622339 | 8.4:+40625126 | MS.gene63165:CDS |
| CGGTGCAGAAGAATTTGCTA+GGG | 0.622722 | 8.4:+40625273 | MS.gene63165:CDS |
| CTGCTGCAACCTCAACTGGA+GGG | 0.626492 | 8.4:+40625721 | MS.gene63165:CDS |
| GAAGGCGAGGTAAGAATGAG+GGG | 0.630197 | 8.4:-40625248 | None:intergenic |
| ATTTACGCGCCGGAGACCGT+CGG | 0.633728 | 8.4:+40625666 | MS.gene63165:CDS |
| ATGGAGGCTAGTATCATGGA+TGG | 0.635651 | 8.4:+40625142 | MS.gene63165:CDS |
| CACGGCCAGAATTCAAAAGT+GGG | 0.635763 | 8.4:-40625087 | None:intergenic |
| TCCGGCGCGTAAATGCTCAT+CGG | 0.640097 | 8.4:-40625657 | None:intergenic |
| CGAGTGCAGAAGCATTGGAT+CGG | 0.648150 | 8.4:-40624806 | None:intergenic |
| TAAGTTCCAGCACCTATGAG+AGG | 0.650295 | 8.4:-40625780 | None:intergenic |
| TGTGTCCAATAAGGGTGAAG+TGG | 0.655230 | 8.4:+40625974 | MS.gene63165:CDS |
| CTTCTGCACCGGAGAAGGCG+AGG | 0.656386 | 8.4:-40625261 | None:intergenic |
| GGAGACCGTCGGATGTGTGG+TGG | 0.674288 | 8.4:+40625677 | MS.gene63165:CDS |
| GATGGTACCAAGAGAAGATG+TGG | 0.682088 | 8.4:+40625160 | MS.gene63165:CDS |
| TGGTATGCTGAAACTCGCAA+AGG | 0.682548 | 8.4:+40625440 | MS.gene63165:CDS |
| TGGGCCATTGCTGTTCATGG+CGG | 0.682587 | 8.4:+40624693 | MS.gene63165:CDS |
| ACTTATGCATGTGAAGTGTG+TGG | 0.696667 | 8.4:+40625798 | MS.gene63165:CDS |
| GGGCTAATGAACAAAATGAG+TGG | 0.699843 | 8.4:+40625741 | MS.gene63165:CDS |
| TCTGACAGCAAAAGGAACGG+TGG | 0.711989 | 8.4:+40625117 | MS.gene63165:CDS |
| TGTGTGGTGGTGGACAGTGA+AGG | 0.729603 | 8.4:+40625690 | MS.gene63165:CDS |
| AACTGAGAATGGGTTCACGG+AGG | 0.780929 | 8.4:+40626037 | MS.gene63165:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTATATCATTAATAATCA+TGG | + | chr8.4:40624892-40624911 | MS.gene63165:intron | 10.0% |
| !! | GATTATTAATGATATAAATT+AGG | - | chr8.4:40624891-40624910 | None:intergenic | 10.0% |
| !! | TATATTTATAGATCAAAAAT+TGG | - | chr8.4:40625332-40625351 | None:intergenic | 10.0% |
| !! | TTTATATCATTAATAATCAT+GGG | + | chr8.4:40624893-40624912 | MS.gene63165:intron | 10.0% |
| !! | TTAATGATATAAATTAGGTT+AGG | - | chr8.4:40624886-40624905 | None:intergenic | 15.0% |
| !!! | CTTTTTAATCAAAAGATATT+TGG | + | chr8.4:40625355-40625374 | MS.gene63165:intron | 15.0% |
| !! | AAATTAGGTTAGGTTTATTA+CGG | - | chr8.4:40624876-40624895 | None:intergenic | 20.0% |
| ! | AAAGGAAGCTAATACAATAT+TGG | + | chr8.4:40625458-40625477 | MS.gene63165:CDS | 25.0% |
| ! | AACCCTAAAATCAACAAAAA+CGG | - | chr8.4:40625034-40625053 | None:intergenic | 25.0% |
| ! | TCACTTGTGTAATTAAAATG+TGG | + | chr8.4:40625517-40625536 | MS.gene63165:intron | 25.0% |
| ! | TCATTAATAATCATGGGATA+AGG | + | chr8.4:40624899-40624918 | MS.gene63165:intron | 25.0% |
| ! | TTACTAATGAATGTGTTTGA+TGG | + | chr8.4:40625556-40625575 | MS.gene63165:intron | 25.0% |
| !! | AATTGTAATGGAATGTTTAG+GGG | + | chr8.4:40626008-40626027 | MS.gene63165:CDS | 25.0% |
| !! | CAATTGTAATGGAATGTTTA+GGG | + | chr8.4:40626007-40626026 | MS.gene63165:CDS | 25.0% |
| !! | TCAATTGTAATGGAATGTTT+AGG | + | chr8.4:40626006-40626025 | MS.gene63165:CDS | 25.0% |
| !!! | ATTTGGTCATGTTTTTTCTA+GGG | + | chr8.4:40625372-40625391 | MS.gene63165:intron | 25.0% |
| !!! | TATTTGGTCATGTTTTTTCT+AGG | + | chr8.4:40625371-40625390 | MS.gene63165:intron | 25.0% |
| !!! | TTCCGTTTTTGTTGATTTTA+GGG | + | chr8.4:40625029-40625048 | MS.gene63165:intron | 25.0% |
| !!! | TTTCCGTTTTTGTTGATTTT+AGG | + | chr8.4:40625028-40625047 | MS.gene63165:intron | 25.0% |
| GTTTATTACGGAAAAGACAT+GGG | - | chr8.4:40624864-40624883 | None:intergenic | 30.0% | |
| GTTTGATTATCGAATTCCAA+CGG | + | chr8.4:40625590-40625609 | MS.gene63165:intron | 30.0% | |
| TAATGAATGTGTTTGATGGA+CGG | + | chr8.4:40625560-40625579 | MS.gene63165:intron | 30.0% | |
| TTTCAGCATACCAACATTAT+CGG | - | chr8.4:40625433-40625452 | None:intergenic | 30.0% | |
| ! | AAGAGAGATTGGATTTTTCA+CGG | - | chr8.4:40625206-40625225 | None:intergenic | 30.0% |
| !! | TTTAGGGTTCTTTTTGTGAT+AGG | + | chr8.4:40625045-40625064 | MS.gene63165:intron | 30.0% |
| AACAAAATGAGTGGTCGAAT+CGG | + | chr8.4:40625750-40625769 | MS.gene63165:CDS | 35.0% | |
| CTTATTGCTGTGTCCAATAA+GGG | + | chr8.4:40625966-40625985 | MS.gene63165:CDS | 35.0% | |
| GATACCAAGATTGAGACATT+CGG | - | chr8.4:40624778-40624797 | None:intergenic | 35.0% | |
| GATAGTCCAGTGAAAATGAA+TGG | + | chr8.4:40625630-40625649 | MS.gene63165:CDS | 35.0% | |
| GCTTATGGGTTCAATTGTAA+TGG | + | chr8.4:40625996-40626015 | MS.gene63165:CDS | 35.0% | |
| GGTTTATTACGGAAAAGACA+TGG | - | chr8.4:40624865-40624884 | None:intergenic | 35.0% | |
| GTTATGGAGTACAAAGACTA+TGG | + | chr8.4:40625885-40625904 | MS.gene63165:CDS | 35.0% | |
| TCTTATTGCTGTGTCCAATA+AGG | + | chr8.4:40625965-40625984 | MS.gene63165:CDS | 35.0% | |
| TTCAGCATACCAACATTATC+GGG | - | chr8.4:40625432-40625451 | None:intergenic | 35.0% | |
| ! | ATTAAGCATCGTCTTGATGA+AGG | + | chr8.4:40625933-40625952 | MS.gene63165:CDS | 35.0% |
| ! | TTAAGCATCGTCTTGATGAA+GGG | + | chr8.4:40625934-40625953 | MS.gene63165:CDS | 35.0% |
| AATAAGGGTGAAGTGGCTTA+TGG | + | chr8.4:40625981-40626000 | MS.gene63165:CDS | 40.0% | |
| ACATTCGGTAAGAAGCTGTT+TGG | - | chr8.4:40624763-40624782 | None:intergenic | 40.0% | |
| ACTTATGCATGTGAAGTGTG+TGG | + | chr8.4:40625798-40625817 | MS.gene63165:CDS | 40.0% | |
| ATAAGCCACTTCACCCTTAT+TGG | - | chr8.4:40625982-40626001 | None:intergenic | 40.0% | |
| ATAAGGGTGAAGTGGCTTAT+GGG | + | chr8.4:40625982-40626001 | MS.gene63165:CDS | 40.0% | |
| ATTCCAACGGAAAAATGTGC+TGG | + | chr8.4:40625603-40625622 | MS.gene63165:CDS | 40.0% | |
| CTTACCGAATGTCTCAATCT+TGG | + | chr8.4:40624771-40624790 | MS.gene63165:CDS | 40.0% | |
| GGGCTAATGAACAAAATGAG+TGG | + | chr8.4:40625741-40625760 | MS.gene63165:CDS | 40.0% | |
| TTCATCACTCCCGATAATGT+TGG | + | chr8.4:40625420-40625439 | MS.gene63165:CDS | 40.0% | |
| ! | AGAGATTGGATTTTTCACGG+TGG | - | chr8.4:40625203-40625222 | None:intergenic | 40.0% |
| !! | ACAGACCCACTTTTGAATTC+TGG | + | chr8.4:40625082-40625101 | MS.gene63165:CDS | 40.0% |
| !! | AGAAGAATTTGCTAGGGAAC+AGG | + | chr8.4:40625279-40625298 | MS.gene63165:CDS | 40.0% |
| AAAAGGAACGGTGGAAATGG+AGG | + | chr8.4:40625126-40625145 | MS.gene63165:CDS | 45.0% | |
| AAATTCTTCTGCACCGGAGA+AGG | - | chr8.4:40625269-40625288 | None:intergenic | 45.0% | |
| ACAAGACGAGCAAGAGAGAT+TGG | - | chr8.4:40625217-40625236 | None:intergenic | 45.0% | |
| AGAAGGCGAGGTAAGAATGA+GGG | - | chr8.4:40625252-40625271 | None:intergenic | 45.0% | |
| AGCAAAAGGAACGGTGGAAA+TGG | + | chr8.4:40625123-40625142 | MS.gene63165:CDS | 45.0% | |
| ATCGGTGATTCACCTCTCAT+AGG | + | chr8.4:40625768-40625787 | MS.gene63165:CDS | 45.0% | |
| ATGGAGGCTAGTATCATGGA+TGG | + | chr8.4:40625142-40625161 | MS.gene63165:CDS | 45.0% | |
| CACGGCCAGAATTCAAAAGT+GGG | - | chr8.4:40625090-40625109 | None:intergenic | 45.0% | |
| CCTAGCAAATTCTTCTGCAC+CGG | - | chr8.4:40625275-40625294 | None:intergenic | 45.0% | |
| CTATGGACTTCAACAAGCTG+TGG | + | chr8.4:40625902-40625921 | MS.gene63165:CDS | 45.0% | |
| GAAGGTGAAGCTATCATTCG+TGG | + | chr8.4:40625837-40625856 | MS.gene63165:CDS | 45.0% | |
| GATGGTACCAAGAGAAGATG+TGG | + | chr8.4:40625160-40625179 | MS.gene63165:CDS | 45.0% | |
| GGAAATGGAGGCTAGTATCA+TGG | + | chr8.4:40625138-40625157 | MS.gene63165:CDS | 45.0% | |
| TAAGTTCCAGCACCTATGAG+AGG | - | chr8.4:40625783-40625802 | None:intergenic | 45.0% | |
| TAATCTTCCAACACACCGTC+AGG | + | chr8.4:40624731-40624750 | MS.gene63165:CDS | 45.0% | |
| TACAGCACCACATCTTCTCT+TGG | - | chr8.4:40625170-40625189 | None:intergenic | 45.0% | |
| TGACGGTGTGTTGGAAGATT+AGG | - | chr8.4:40624732-40624751 | None:intergenic | 45.0% | |
| TGCTCTGACAGCAAAAGGAA+CGG | + | chr8.4:40625114-40625133 | MS.gene63165:CDS | 45.0% | |
| TGGTATGCTGAAACTCGCAA+AGG | + | chr8.4:40625440-40625459 | MS.gene63165:CDS | 45.0% | |
| TGTGTCCAATAAGGGTGAAG+TGG | + | chr8.4:40625974-40625993 | MS.gene63165:CDS | 45.0% | |
| ! | GGCAGACCATTCATTTTCAC+TGG | - | chr8.4:40625639-40625658 | None:intergenic | 45.0% |
| ! | GTTCACGGAGGTTGGAATTT+TGG | + | chr8.4:40626049-40626068 | MS.gene63165:CDS | 45.0% |
| ! | GTTCCAGCACATTTTTCCGT+TGG | - | chr8.4:40625609-40625628 | None:intergenic | 45.0% |
| ! | TGAATGTGTTTGATGGACGG+TGG | + | chr8.4:40625563-40625582 | MS.gene63165:intron | 45.0% |
| ! | TGCAACTGAGAATGGGTTCA+CGG | + | chr8.4:40626034-40626053 | MS.gene63165:CDS | 45.0% |
| !! | AGAAGATGTGGTGCTGTATC+TGG | + | chr8.4:40625172-40625191 | MS.gene63165:CDS | 45.0% |
| !! | CGGTGCAGAAGAATTTGCTA+GGG | + | chr8.4:40625273-40625292 | MS.gene63165:CDS | 45.0% |
| !!! | GTCATGTTTTTTCTAGGGCG+TGG | + | chr8.4:40625377-40625396 | MS.gene63165:intron | 45.0% |
| !!! | AAATTATATTATTGTTATTA+TGG | - | chr8.4:40624977-40624996 | None:intergenic | 5.0% |
| !!! | AATAATATAATTTTTAAATC+GGG | + | chr8.4:40624984-40625003 | MS.gene63165:intron | 5.0% |
| !!! | CAATAATATAATTTTTAAAT+CGG | + | chr8.4:40624983-40625002 | MS.gene63165:intron | 5.0% |
| ACGTGAAGTGGCTGCAGTTA+TGG | + | chr8.4:40625869-40625888 | MS.gene63165:CDS | 50.0% | |
| AGGGGATGTGCAACTGAGAA+TGG | + | chr8.4:40626026-40626045 | MS.gene63165:CDS | 50.0% | |
| CATTCTTACCTCGCCTTCTC+CGG | + | chr8.4:40625253-40625272 | MS.gene63165:CDS | 50.0% | |
| CCACGGCCAGAATTCAAAAG+TGG | - | chr8.4:40625091-40625110 | None:intergenic | 50.0% | |
| CGTCTTGATGAAGGGTTTGC+TGG | + | chr8.4:40625942-40625961 | MS.gene63165:CDS | 50.0% | |
| CTCTCTTGCTCGTCTTGTCA+TGG | + | chr8.4:40625219-40625238 | MS.gene63165:CDS | 50.0% | |
| GAAGGCGAGGTAAGAATGAG+GGG | - | chr8.4:40625251-40625270 | None:intergenic | 50.0% | |
| GAGAAGGCGAGGTAAGAATG+AGG | - | chr8.4:40625253-40625272 | None:intergenic | 50.0% | |
| GATTCACCTCTCATAGGTGC+TGG | + | chr8.4:40625774-40625793 | MS.gene63165:CDS | 50.0% | |
| GGATCTGCTCTGACAGCAAA+AGG | + | chr8.4:40625109-40625128 | MS.gene63165:CDS | 50.0% | |
| GGGGATGTGCAACTGAGAAT+GGG | + | chr8.4:40626027-40626046 | MS.gene63165:CDS | 50.0% | |
| GTGTGTGGAGTTTCTTGCAC+TGG | + | chr8.4:40625813-40625832 | MS.gene63165:CDS | 50.0% | |
| GTTCATTAGCCCTCCAGTTG+AGG | - | chr8.4:40625733-40625752 | None:intergenic | 50.0% | |
| TCTGACAGCAAAAGGAACGG+TGG | + | chr8.4:40625117-40625136 | MS.gene63165:CDS | 50.0% | |
| TTGCTGTCAGAGCAGATCCA+CGG | - | chr8.4:40625108-40625127 | None:intergenic | 50.0% | |
| ! | AACTGAGAATGGGTTCACGG+AGG | + | chr8.4:40626037-40626056 | MS.gene63165:CDS | 50.0% |
| ! | CCGGTGCAGAAGAATTTGCT+AGG | + | chr8.4:40625272-40625291 | MS.gene63165:CDS | 50.0% |
| ! | GCTGTTTGGCTTCTTCCTGA+CGG | - | chr8.4:40624749-40624768 | None:intergenic | 50.0% |
| ! | GGAGTTTCTTGCACTGGTGA+AGG | + | chr8.4:40625819-40625838 | MS.gene63165:CDS | 50.0% |
| !! | CCACTTTTGAATTCTGGCCG+TGG | + | chr8.4:40625088-40625107 | MS.gene63165:CDS | 50.0% |
| !! | CGAGTGCAGAAGCATTGGAT+CGG | - | chr8.4:40624809-40624828 | None:intergenic | 50.0% |
| CTGCTGCAACCTCAACTGGA+GGG | + | chr8.4:40625721-40625740 | MS.gene63165:CDS | 55.0% | |
| GCTTCTTCCTGACGGTGTGT+TGG | - | chr8.4:40624741-40624760 | None:intergenic | 55.0% | |
| TCCGGCGCGTAAATGCTCAT+CGG | - | chr8.4:40625660-40625679 | None:intergenic | 55.0% | |
| TGGCACTCTTGCACGTGAAG+TGG | + | chr8.4:40625857-40625876 | MS.gene63165:CDS | 55.0% | |
| ! | GACGTCGAGTGCAGAAGCAT+TGG | - | chr8.4:40624814-40624833 | None:intergenic | 55.0% |
| ! | GAGAATGGGTTCACGGAGGT+TGG | + | chr8.4:40626041-40626060 | MS.gene63165:CDS | 55.0% |
| ! | GGTTGGGCCATTGCTGTTCA+TGG | + | chr8.4:40624690-40624709 | MS.gene63165:CDS | 55.0% |
| ! | TGGGCCATTGCTGTTCATGG+CGG | + | chr8.4:40624693-40624712 | MS.gene63165:CDS | 55.0% |
| ! | TGTGCTGCTGCAACCTCAAC+TGG | + | chr8.4:40625717-40625736 | MS.gene63165:CDS | 55.0% |
| !! | TGTGTGGTGGTGGACAGTGA+AGG | + | chr8.4:40625690-40625709 | MS.gene63165:CDS | 55.0% |
| !! | TTTCTAGGGCGTGGAGACTG+AGG | + | chr8.4:40625386-40625405 | MS.gene63165:intron | 55.0% |
| ACCACACATCCGACGGTCTC+CGG | - | chr8.4:40625678-40625697 | None:intergenic | 60.0% | |
| ATTTACGCGCCGGAGACCGT+CGG | + | chr8.4:40625666-40625685 | MS.gene63165:CDS | 60.0% | |
| GCCGATGAGCATTTACGCGC+CGG | + | chr8.4:40625656-40625675 | MS.gene63165:CDS | 60.0% | |
| GCTGCTGCAACCTCAACTGG+AGG | + | chr8.4:40625720-40625739 | MS.gene63165:CDS | 60.0% | |
| GTCCACCACCACACATCCGA+CGG | - | chr8.4:40625685-40625704 | None:intergenic | 60.0% | |
| TGCGCCGCCATGAACAGCAA+TGG | - | chr8.4:40624700-40624719 | None:intergenic | 60.0% | |
| ! | ATTGCTGTTCATGGCGGCGC+AGG | + | chr8.4:40624699-40624718 | MS.gene63165:CDS | 60.0% |
| CTTCTGCACCGGAGAAGGCG+AGG | - | chr8.4:40625264-40625283 | None:intergenic | 65.0% | |
| GACCGTCGGATGTGTGGTGG+TGG | + | chr8.4:40625680-40625699 | MS.gene63165:CDS | 65.0% | |
| GGAGACCGTCGGATGTGTGG+TGG | + | chr8.4:40625677-40625696 | MS.gene63165:CDS | 65.0% | |
| TGTTCATGGCGGCGCAGGTG+TGG | + | chr8.4:40624704-40624723 | MS.gene63165:CDS | 65.0% | |
| GCCGGAGACCGTCGGATGTG+TGG | + | chr8.4:40625674-40625693 | MS.gene63165:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 40624684 | 40626076 | 40624684 | ID=MS.gene63165 |
| chr8.4 | mRNA | 40624684 | 40626076 | 40624684 | ID=MS.gene63165.t1;Parent=MS.gene63165 |
| chr8.4 | exon | 40624684 | 40624845 | 40624684 | ID=MS.gene63165.t1.exon1;Parent=MS.gene63165.t1 |
| chr8.4 | CDS | 40624684 | 40624845 | 40624684 | ID=cds.MS.gene63165.t1;Parent=MS.gene63165.t1 |
| chr8.4 | exon | 40625067 | 40625300 | 40625067 | ID=MS.gene63165.t1.exon2;Parent=MS.gene63165.t1 |
| chr8.4 | CDS | 40625067 | 40625300 | 40625067 | ID=cds.MS.gene63165.t1;Parent=MS.gene63165.t1 |
| chr8.4 | exon | 40625393 | 40625479 | 40625393 | ID=MS.gene63165.t1.exon3;Parent=MS.gene63165.t1 |
| chr8.4 | CDS | 40625393 | 40625479 | 40625393 | ID=cds.MS.gene63165.t1;Parent=MS.gene63165.t1 |
| chr8.4 | exon | 40625591 | 40626076 | 40625591 | ID=MS.gene63165.t1.exon4;Parent=MS.gene63165.t1 |
| chr8.4 | CDS | 40625591 | 40626076 | 40625591 | ID=cds.MS.gene63165.t1;Parent=MS.gene63165.t1 |
| Gene Sequence |
| Protein sequence |
