AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene63996

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene63996.t1 MTR_1g024025 95.713 863 34 2 1 863 1 860 0.0 1709
MS.gene63996.t1 MTR_1g024025 78.711 357 23 2 507 863 962 1265 0.0 558
MS.gene63996.t1 MTR_1g024025 47.191 267 82 11 220 472 846 1067 5.66e-40 160
MS.gene63996.t1 MTR_2g018690 67.847 367 114 3 35 398 15 380 5.00e-168 511
MS.gene63996.t1 MTR_5g076270 68.120 367 113 3 35 398 16 381 9.09e-168 508
MS.gene63996.t1 MTR_5g076270 41.060 151 71 3 730 862 670 820 1.07e-25 114
MS.gene63996.t1 MTR_4g124900 72.886 343 90 3 35 376 15 355 1.13e-167 516
MS.gene63996.t1 MTR_4g124900 39.631 217 120 4 634 849 856 1062 6.80e-34 140
MS.gene63996.t1 MTR_4g124900 72.886 343 90 3 35 376 15 355 2.02e-167 516
MS.gene63996.t1 MTR_4g124900 39.631 217 120 4 634 849 879 1085 7.46e-34 140
MS.gene63996.t1 MTR_3g064050 68.219 365 112 3 37 398 20 383 5.76e-167 506
MS.gene63996.t1 MTR_3g064050 42.763 152 84 2 712 862 679 828 3.72e-27 119
MS.gene63996.t1 MTR_2g043250 71.137 343 96 3 35 376 15 355 1.73e-163 506
MS.gene63996.t1 MTR_2g043250 60.952 105 41 0 745 849 974 1078 1.22e-32 137
MS.gene63996.t1 MTR_8g079492 66.757 367 117 4 35 398 15 379 9.70e-161 493
MS.gene63996.t1 MTR_8g079492 50.806 124 61 0 739 862 763 886 9.12e-31 130
MS.gene63996.t1 MTR_8g079492 66.757 367 117 4 35 398 15 379 1.10e-160 493
MS.gene63996.t1 MTR_8g079492 50.806 124 61 0 739 862 764 887 9.46e-31 130
MS.gene63996.t1 MTR_8g101360 68.047 338 107 1 40 376 28 365 9.39e-150 469
MS.gene63996.t1 MTR_8g101360 39.806 206 100 6 649 849 890 1076 4.67e-34 141
MS.gene63996.t1 MTR_8g079492 67.114 298 94 3 104 398 1 297 4.18e-127 402
MS.gene63996.t1 MTR_8g079492 50.806 124 61 0 739 862 681 804 7.58e-31 130
MS.gene63996.t1 MTR_8g100050 53.687 339 154 3 39 376 55 391 2.58e-119 379
MS.gene63996.t1 MTR_2g005240 53.846 338 154 2 39 376 19 354 2.16e-118 374
MS.gene63996.t1 MTR_2g005240 48.387 93 44 3 756 846 546 636 9.41e-18 88.6
MS.gene63996.t1 MTR_8g100050 53.687 339 154 3 39 376 55 391 3.27e-118 379
MS.gene63996.t1 MTR_8g100050 42.857 91 50 2 757 846 710 799 5.50e-15 79.7
MS.gene63996.t1 MTR_2g093740 52.137 351 153 6 43 381 56 403 3.05e-112 359
MS.gene63996.t1 MTR_2g093740 52.137 351 153 6 43 381 56 403 1.52e-111 359
MS.gene63996.t1 MTR_2g093740 47.143 70 35 2 757 825 682 750 3.40e-14 77.4
MS.gene63996.t1 MTR_2g093740 52.137 351 153 6 43 381 56 403 2.90e-111 360
MS.gene63996.t1 MTR_2g093740 42.308 104 58 2 757 859 682 784 5.03e-18 89.7
MS.gene63996.t1 MTR_8g027440 51.009 347 165 4 31 376 16 358 3.05e-111 356
MS.gene63996.t1 MTR_8g027440 41.593 113 57 4 747 855 545 652 1.32e-15 81.6
MS.gene63996.t1 MTR_2g093740 50.275 364 153 7 43 381 56 416 1.13e-108 350
MS.gene63996.t1 MTR_2g093740 50.275 364 153 7 43 381 56 416 1.15e-107 349
MS.gene63996.t1 MTR_2g093740 47.143 70 35 2 757 825 695 763 3.60e-14 77.0
MS.gene63996.t1 MTR_2g093740 50.275 364 153 7 43 381 56 416 1.91e-107 350
MS.gene63996.t1 MTR_2g093740 42.308 104 58 2 757 859 695 797 5.65e-18 89.7
MS.gene63996.t1 MTR_2g014770 50.867 346 147 6 43 376 53 387 1.08e-105 339
MS.gene63996.t1 MTR_4g060460 49.857 349 154 6 43 376 54 396 3.37e-105 343
MS.gene63996.t1 MTR_4g060460 45.055 91 48 2 757 846 658 747 2.57e-18 90.5
MS.gene63996.t1 MTR_4g060460 49.857 349 154 6 43 376 54 396 4.81e-105 343
MS.gene63996.t1 MTR_4g060460 45.055 91 48 2 757 846 663 752 2.59e-18 90.5
MS.gene63996.t1 MTR_2g014770 50.867 346 147 6 43 376 53 387 6.47e-105 339
MS.gene63996.t1 MTR_4g088210 47.721 373 157 8 43 393 38 394 5.70e-104 337
MS.gene63996.t1 MTR_4g088210 47.721 373 157 8 43 393 38 394 7.34e-104 337
MS.gene63996.t1 MTR_4g021580 50.877 342 153 7 41 376 17 349 1.69e-103 333
MS.gene63996.t1 MTR_4g021580 50.877 342 153 7 41 376 17 349 2.49e-103 335
MS.gene63996.t1 MTR_4g021580 41.441 111 59 4 750 859 550 655 1.30e-15 81.6
MS.gene63996.t1 MTR_7g062540 47.384 344 174 5 35 376 6 344 5.78e-100 326
MS.gene63996.t1 MTR_7g062540 42.857 91 49 2 757 846 570 658 1.61e-14 78.2
MS.gene63996.t1 MTR_2g093740 54.032 248 112 2 135 381 27 273 2.42e-83 280
MS.gene63996.t1 MTR_2g093740 47.143 70 35 2 757 825 552 620 2.78e-14 77.4
MS.gene63996.t1 MTR_2g093740 54.032 248 112 2 135 381 27 273 3.99e-83 281
MS.gene63996.t1 MTR_2g093740 42.308 104 58 2 757 859 552 654 3.63e-18 89.7
MS.gene63996.t1 MTR_2g093740 51.341 261 112 3 135 381 27 286 8.10e-80 271
MS.gene63996.t1 MTR_2g093740 47.143 70 35 2 757 825 565 633 2.91e-14 77.4
MS.gene63996.t1 MTR_2g093740 51.341 261 112 3 135 381 27 286 1.22e-79 271
MS.gene63996.t1 MTR_2g093740 42.308 104 58 2 757 859 565 667 3.84e-18 89.7
MS.gene63996.t1 MTR_2g094570 40.741 378 177 8 38 376 6 375 4.00e-79 270
MS.gene63996.t1 MTR_2g094570 40.741 378 177 8 38 376 6 375 6.21e-79 270
MS.gene63996.t1 MTR_1g064430 37.984 387 187 6 36 376 20 399 7.56e-79 270
MS.gene63996.t1 MTR_1g064430 37.984 387 187 6 36 376 33 412 8.17e-79 270
MS.gene63996.t1 MTR_2g094570 40.741 378 177 8 38 376 62 431 1.78e-78 270
MS.gene63996.t1 MTR_4g058930 40.365 384 172 8 40 376 9 382 2.93e-77 265
MS.gene63996.t1 MTR_4g058930 40.365 384 172 8 40 376 9 382 9.13e-77 264
MS.gene63996.t1 MTR_1g094960 38.191 398 196 10 38 394 14 402 2.04e-76 261
MS.gene63996.t1 MTR_7g101280 35.437 412 191 10 36 385 24 422 9.77e-71 246
MS.gene63996.t1 MTR_0041s0110 35.437 412 191 10 36 385 24 422 9.77e-71 246
MS.gene63996.t1 MTR_7g101275 38.050 318 177 6 52 361 1 306 1.90e-66 228
MS.gene63996.t1 MTR_3g073420 36.951 387 200 7 39 387 15 395 2.77e-66 233
MS.gene63996.t1 MTR_8g446900 41.751 297 159 7 84 376 2 288 3.15e-66 226
MS.gene63996.t1 MTR_0041s0120 34.835 333 179 8 52 361 1 318 3.25e-58 205
MS.gene63996.t1 MTR_5g061220 34.688 369 196 10 38 376 14 367 8.34e-57 204
MS.gene63996.t1 MTR_5g040880 32.644 435 246 15 37 457 5 406 1.16e-56 204
MS.gene63996.t1 MTR_5g082140 34.037 379 212 13 38 394 7 369 2.11e-53 193
MS.gene63996.t1 MTR_1g058210 32.153 367 221 10 38 394 7 355 1.70e-49 182
MS.gene63996.t1 MTR_2g024430 35.328 351 180 14 43 376 20 340 1.43e-47 177
MS.gene63996.t1 MTR_3g064050 62.329 146 54 1 254 398 1 146 1.24e-46 177
MS.gene63996.t1 MTR_3g064050 42.763 152 84 2 712 862 442 591 2.11e-27 119
MS.gene63996.t1 MTR_2g006270 33.333 339 206 10 43 376 13 336 6.07e-43 163
MS.gene63996.t1 MTR_2g006380 30.347 346 208 12 40 376 17 338 2.49e-40 155
MS.gene63996.t1 MTR_5g040740 32.622 328 186 11 40 355 9 313 4.72e-40 153
MS.gene63996.t1 MTR_5g060630 31.658 398 212 16 38 396 7 383 2.13e-38 151
MS.gene63996.t1 MTR_5g460740 31.658 398 212 16 38 396 7 383 2.13e-38 151
MS.gene63996.t1 MTR_5g032260 50.993 151 65 2 247 397 30 171 4.31e-37 145
MS.gene63996.t1 MTR_5g074840 47.059 187 63 4 125 307 7 161 3.11e-36 134
MS.gene63996.t1 MTR_5g060780 29.107 347 216 10 40 376 9 335 6.36e-33 132
MS.gene63996.t1 MTR_5g460920 29.226 349 213 12 40 376 9 335 1.31e-32 131
MS.gene63996.t1 MTR_5g062970 34.300 207 127 4 39 242 34 234 4.08e-32 125
MS.gene63996.t1 MTR_5g061890 29.107 347 216 10 40 376 9 335 5.05e-32 129
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene63996.t1 AT1G19850 59.551 890 288 21 19 862 32 895 0.0 971
MS.gene63996.t1 AT1G19850 59.280 889 293 20 19 861 21 886 0.0 970
MS.gene63996.t1 AT1G30330 67.925 371 115 3 31 398 11 380 8.01e-168 511
MS.gene63996.t1 AT1G30330 51.667 120 58 0 737 856 774 893 4.13e-31 132
MS.gene63996.t1 AT1G30330 67.655 371 116 3 31 398 13 382 9.75e-167 509
MS.gene63996.t1 AT1G30330 51.667 120 58 0 737 856 776 895 4.60e-31 131
MS.gene63996.t1 AT1G30330 67.655 371 116 3 31 398 13 382 9.75e-167 509
MS.gene63996.t1 AT1G30330 51.667 120 58 0 737 856 776 895 4.60e-31 131
MS.gene63996.t1 AT1G19220 68.365 373 110 5 35 403 15 383 1.12e-165 511
MS.gene63996.t1 AT1G19220 44.578 166 84 4 687 849 890 1050 4.64e-32 135
MS.gene63996.t1 AT5G37020 66.846 371 118 4 31 398 11 379 2.95e-165 500
MS.gene63996.t1 AT5G37020 53.623 69 32 0 757 825 705 773 8.11e-18 89.0
MS.gene63996.t1 AT5G37020 66.846 371 118 4 31 398 11 379 1.68e-164 499
MS.gene63996.t1 AT5G37020 51.613 93 45 0 757 849 705 797 2.05e-24 110
MS.gene63996.t1 AT5G20730 70.262 343 99 3 35 376 16 356 2.65e-158 493
MS.gene63996.t1 AT5G20730 59.406 101 41 0 749 849 1029 1129 1.88e-31 133
MS.gene63996.t1 AT5G20730 70.058 344 99 4 35 376 16 357 1.27e-156 489
MS.gene63996.t1 AT5G20730 59.406 101 41 0 749 849 1030 1130 1.83e-31 133
MS.gene63996.t1 AT5G20730 70.058 344 99 4 35 376 16 357 1.92e-156 488
MS.gene63996.t1 AT5G20730 59.406 101 41 0 749 849 1030 1130 2.00e-31 133
MS.gene63996.t1 AT5G62000 56.140 342 141 4 39 376 57 393 4.11e-123 392
MS.gene63996.t1 AT5G62000 37.931 145 79 4 706 845 683 821 2.47e-18 90.9
MS.gene63996.t1 AT5G62000 56.140 342 141 4 39 376 57 393 4.11e-123 392
MS.gene63996.t1 AT5G62000 37.931 145 79 4 706 845 683 821 2.47e-18 90.9
MS.gene63996.t1 AT5G62000 56.140 342 141 4 39 376 57 393 4.11e-123 392
MS.gene63996.t1 AT5G62000 37.931 145 79 4 706 845 683 821 2.47e-18 90.9
MS.gene63996.t1 AT5G62000 56.140 342 141 4 39 376 57 393 4.11e-123 392
MS.gene63996.t1 AT5G62000 37.931 145 79 4 706 845 683 821 2.47e-18 90.9
MS.gene63996.t1 AT5G62000 56.140 342 141 4 39 376 57 393 4.97e-123 392
MS.gene63996.t1 AT5G62000 35.838 173 88 6 706 861 683 849 1.09e-18 92.0
MS.gene63996.t1 AT5G37020 65.614 285 94 3 117 398 1 284 7.66e-118 374
MS.gene63996.t1 AT5G37020 51.613 93 45 0 757 849 610 702 1.28e-24 110
MS.gene63996.t1 AT1G59750 53.216 342 150 4 39 376 18 353 3.07e-115 366
MS.gene63996.t1 AT1G59750 48.039 102 49 3 756 855 536 635 6.19e-19 92.4
MS.gene63996.t1 AT1G59750 53.216 342 150 4 39 376 18 353 3.75e-115 366
MS.gene63996.t1 AT1G59750 48.039 102 49 3 756 855 541 640 6.21e-19 92.4
MS.gene63996.t1 AT1G59750 53.216 342 150 4 39 376 18 353 3.75e-115 366
MS.gene63996.t1 AT1G59750 48.039 102 49 3 756 855 541 640 6.21e-19 92.4
MS.gene63996.t1 AT1G59750 53.216 342 150 4 39 376 18 353 3.76e-115 366
MS.gene63996.t1 AT1G59750 48.039 102 49 3 756 855 538 637 6.27e-19 92.4
MS.gene63996.t1 AT2G46530 51.429 350 162 6 40 386 18 362 2.72e-111 353
MS.gene63996.t1 AT2G46530 40.000 95 54 2 757 850 490 582 1.86e-14 77.8
MS.gene63996.t1 AT2G46530 51.429 350 162 6 40 386 39 383 3.54e-111 354
MS.gene63996.t1 AT2G46530 40.000 95 54 2 757 850 511 603 2.22e-14 77.8
MS.gene63996.t1 AT3G61830 52.212 339 154 6 40 376 22 354 1.07e-109 349
MS.gene63996.t1 AT3G61830 46.739 92 44 3 757 846 489 577 7.84e-15 79.0
MS.gene63996.t1 AT5G60450 50.838 358 161 7 35 381 33 386 3.22e-108 350
MS.gene63996.t1 AT5G60450 38.835 103 61 2 757 858 641 742 1.67e-16 84.7
MS.gene63996.t1 AT4G23980 52.326 344 147 6 40 376 9 342 2.05e-107 345
MS.gene63996.t1 AT4G23980 46.154 91 46 2 757 846 521 609 2.07e-15 80.9
MS.gene63996.t1 AT5G60450 51.275 353 157 7 40 381 62 410 2.20e-107 349
MS.gene63996.t1 AT5G60450 38.835 103 61 2 757 858 665 766 1.77e-16 84.7
MS.gene63996.t1 AT4G23980 52.326 344 147 6 40 376 9 342 2.40e-107 344
MS.gene63996.t1 AT4G23980 46.154 91 46 2 757 846 523 611 2.15e-15 80.9
MS.gene63996.t1 AT2G33860 49.284 349 158 4 43 381 54 393 3.14e-103 333
MS.gene63996.t1 AT3G61830 51.623 308 141 6 71 376 2 303 2.42e-94 307
MS.gene63996.t1 AT3G61830 46.739 92 44 3 757 846 438 526 6.07e-15 79.3
MS.gene63996.t1 AT1G34410 44.737 342 181 5 35 376 19 352 4.34e-93 306
MS.gene63996.t1 AT1G34410 40.909 88 49 2 757 843 511 596 4.04e-12 70.5
MS.gene63996.t1 AT1G35540 43.860 342 184 6 35 376 19 352 7.68e-91 300
MS.gene63996.t1 AT1G35540 40.000 90 51 2 757 845 510 597 1.85e-12 71.6
MS.gene63996.t1 AT1G35240 43.567 342 185 5 35 376 19 352 1.07e-89 296
MS.gene63996.t1 AT1G35240 42.045 88 48 2 757 843 497 582 2.87e-12 70.9
MS.gene63996.t1 AT1G35520 44.611 334 177 6 43 376 27 352 5.31e-88 291
MS.gene63996.t1 AT1G35520 40.741 81 45 2 757 836 511 589 2.46e-11 67.8
MS.gene63996.t1 AT1G34310 43.567 342 185 6 35 376 19 352 4.20e-87 289
MS.gene63996.t1 AT1G34310 39.506 81 46 2 757 836 511 589 6.09e-11 66.6
MS.gene63996.t1 AT1G34390 44.737 342 179 7 35 376 19 350 2.83e-85 285
MS.gene63996.t1 AT1G34170 41.071 336 188 6 43 376 25 352 9.72e-81 270
MS.gene63996.t1 AT2G46530 50.545 275 128 6 116 386 5 275 1.88e-78 263
MS.gene63996.t1 AT2G46530 40.000 95 54 2 757 850 403 495 1.07e-14 78.2
MS.gene63996.t1 AT2G33860 54.661 236 106 1 146 381 2 236 6.86e-78 260
MS.gene63996.t1 AT2G28350 38.760 387 179 8 38 376 5 381 1.55e-77 265
MS.gene63996.t1 AT2G28350 38.760 387 179 8 38 376 5 381 3.27e-77 265
MS.gene63996.t1 AT4G30080 39.043 397 188 11 35 389 11 395 7.49e-77 263
MS.gene63996.t1 AT1G34170 38.988 336 169 5 43 376 25 326 4.10e-74 251
MS.gene63996.t1 AT1G34170 38.988 336 169 5 43 376 25 326 2.71e-73 251
MS.gene63996.t1 AT1G77850 36.074 377 192 9 37 376 13 377 4.23e-60 215
MS.gene63996.t1 AT1G77850 36.170 376 191 9 38 376 14 377 4.57e-60 215
MS.gene63996.t1 AT1G43950 44.076 211 111 5 35 245 19 222 1.18e-47 169

Find 171 sgRNAs with CRISPR-Local

Find 304 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAACAATGAATGCATGTTAA+AGG 0.173174 1.4:-998649 None:intergenic
CTTCTTATTCTGCAGATATA+TGG 0.173372 1.4:+997911 MS.gene63996:intron
GCCGTTGCAATCCGGATATT+TGG 0.177793 1.4:+998267 MS.gene63996:CDS
AAATATAGAAAATCTGTTTA+TGG 0.183362 1.4:+997742 MS.gene63996:CDS
GGAAAGATGAAAAGGCTTTC+TGG 0.205659 1.4:-998220 None:intergenic
CATAATTATCCCACACTTCT+TGG 0.212825 1.4:-999055 None:intergenic
AGACATTAAATTCAGAATTA+TGG 0.240617 1.4:+995727 MS.gene63996:CDS
TTAGAACCAGGCCACCTTAA+AGG 0.260988 1.4:-997963 None:intergenic
AGCAAAATCGGGTTAGTGTT+TGG 0.286566 1.4:+998185 MS.gene63996:CDS
CTTTCAGCTGGCATGAGATT+TGG 0.299456 1.4:+997772 MS.gene63996:CDS
TTTAGTCCAAACTCAGATAC+TGG 0.303459 1.4:-996397 None:intergenic
GTGCTTGAAAGGTGAACTTT+TGG 0.314555 1.4:-998606 None:intergenic
TTGTTGCATGATAGGTAAAA+AGG 0.323540 1.4:-998523 None:intergenic
CGCGCAATTGAATGCATGTT+TGG 0.329869 1.4:+999631 MS.gene63996:CDS
TTCTAAGTGGCGAAATATTC+AGG 0.333372 1.4:+997980 MS.gene63996:CDS
AATATAGAAAATCTGTTTAT+GGG 0.347239 1.4:+997743 MS.gene63996:CDS
TTCTTATTCTGCAGATATAT+GGG 0.354261 1.4:+997912 MS.gene63996:intron
TGAGCAAAAGTCGTCGAAAA+TGG 0.355292 1.4:-999198 None:intergenic
CCGTTGCAATCCGGATATTT+GGG 0.360826 1.4:+998268 MS.gene63996:CDS
TGCATGTTAAAGGTGTTATT+AGG 0.363217 1.4:-998639 None:intergenic
GCAAAATCGGGTTAGTGTTT+GGG 0.363557 1.4:+998186 MS.gene63996:CDS
TGCTAGTTGGAGATGATCCT+TGG 0.365242 1.4:+999728 MS.gene63996:CDS
GATGGAAGACTAGGGTAGTT+TGG 0.373410 1.4:-996049 None:intergenic
GCATAATCTTGTTGCATGAT+AGG 0.375254 1.4:-998531 None:intergenic
GTTTGTTTGTCGGCTCAAAA+AGG 0.375508 1.4:+997122 MS.gene63996:CDS
GCTGTTTACAATAGAAGAAT+CGG 0.384358 1.4:-998946 None:intergenic
TTTGATTATAATATGTTAGT+TGG 0.389191 1.4:-998812 None:intergenic
GTGTTTCCAGTATCTGAGTT+TGG 0.389251 1.4:+996391 MS.gene63996:CDS
TTGTAAATAAACAGGCTGAA+TGG 0.397672 1.4:+998140 MS.gene63996:intron
CACACTTCTTGGTTCATTGA+AGG 0.399760 1.4:-999044 None:intergenic
GTTAAAGAGATGAGTGAAGA+AGG 0.411917 1.4:+999946 MS.gene63996:CDS
CATGGCTTCCTTAGAAGAAA+AGG 0.416918 1.4:+995486 None:intergenic
TGTAAATAAACAGGCTGAAT+GGG 0.419597 1.4:+998141 MS.gene63996:intron
TTCTGCAGAATAATAACTCT+TGG 0.422237 1.4:+999396 MS.gene63996:CDS
TCAGTGATGTCGATCCTTTA+AGG 0.425306 1.4:+997949 MS.gene63996:CDS
CTGAATGACACAAAAGGTTC+CGG 0.425971 1.4:+999667 MS.gene63996:CDS
ATGTTACCTTTGTGTAGGTT+CGG 0.426676 1.4:-999439 None:intergenic
CACCCTCAAGATTGCATGGT+TGG 0.430745 1.4:+999242 MS.gene63996:CDS
TTGTTGCAGCTTTCAAAAGA+TGG 0.431109 1.4:-998765 None:intergenic
GATGTTTGAGACCGAGGAAT+CGG 0.432905 1.4:+997798 MS.gene63996:CDS
GAACAACTAGTTCTTGAGTT+GGG 0.432917 1.4:-996637 None:intergenic
GGTGTGGTGATAAGCAAAAT+CGG 0.435666 1.4:+998173 MS.gene63996:CDS
GTCGATCCTTTAAGGTGGCC+TGG 0.437670 1.4:+997957 MS.gene63996:CDS
ATTGTTGAAAAGTGAGCAAC+CGG 0.440957 1.4:+998665 MS.gene63996:CDS
CTTGTGTCATTGCCTCAAGT+GGG 0.444777 1.4:+995768 MS.gene63996:CDS
TATTTGCAGGGCATGTCCTT+CGG 0.447302 1.4:+997699 MS.gene63996:intron
CTAAAACGGCCGTTGCAATC+CGG 0.447348 1.4:+998259 MS.gene63996:CDS
CTTTGACTTCAAGCCTAAAA+CGG 0.447527 1.4:+998245 MS.gene63996:CDS
CTCATCTCTTTAACTTCTGA+AGG 0.449266 1.4:-999937 None:intergenic
GATCTTGTGTAGGGAATTTG+TGG 0.451328 1.4:+999885 MS.gene63996:intron
CGCAATTGCGAGTTGGTGTA+AGG 0.454613 1.4:+997463 MS.gene63996:CDS
GGAAAAGCTGTTTCCTCCAT+TGG 0.458270 1.4:+996513 MS.gene63996:CDS
AGATATATGGGTACAATTGT+AGG 0.463723 1.4:+997924 MS.gene63996:intron
TATGGGACTCACCTTTCAGC+TGG 0.465604 1.4:+997760 MS.gene63996:CDS
AAAAGTGTTGGAGGAGTTGT+TGG 0.469435 1.4:+995511 MS.gene63996:CDS
GAATTATGGCATGCTTGTGC+TGG 0.470225 1.4:+995741 MS.gene63996:CDS
GCTAGTTGGAGATGATCCTT+GGG 0.470617 1.4:+999729 MS.gene63996:CDS
TCAAAGAAGGAAAGATGAAA+AGG 0.471141 1.4:-998228 None:intergenic
TTTAGGCTTGAAGTCAAAGA+AGG 0.471500 1.4:-998241 None:intergenic
ATTAAAGTACCCGAAAATGA+AGG 0.474465 1.4:+998408 MS.gene63996:CDS
CATTGACACAAATTTCACTT+TGG 0.474844 1.4:-999121 None:intergenic
CCTGTTCACTATGTCCTTGA+GGG 0.475837 1.4:-995809 None:intergenic
AAGAAACGTACCCAAATATC+CGG 0.476983 1.4:-998278 None:intergenic
GAGAGTGATGTTCTGCTAGT+TGG 0.482377 1.4:+999715 MS.gene63996:CDS
TAATAGTGTCAGTACCACTA+TGG 0.485813 1.4:+999154 MS.gene63996:CDS
TCTTGTGTCATTGCCTCAAG+TGG 0.485817 1.4:+995767 MS.gene63996:CDS
CCCTCAAGGACATAGTGAAC+AGG 0.486634 1.4:+995809 MS.gene63996:CDS
AAGAGACACCTTCTCACAAC+GGG 0.488034 1.4:+997094 MS.gene63996:CDS
ACGGGTTGGAGTTTGTTTGT+CGG 0.492443 1.4:+997112 MS.gene63996:CDS
TCTAACTGAGGCTGCTGCAT+TGG 0.492863 1.4:-998882 None:intergenic
AGCTTACAGAATTCAGTGGT+TGG 0.493036 1.4:-996259 None:intergenic
GAAGAAAAGGCTAAAAGTGT+TGG 0.493255 1.4:+995499 MS.gene63996:CDS
ACCTTTGTGTAGGTTCGGAT+TGG 0.493613 1.4:-999434 None:intergenic
AAAATGGTGTTTGAAGTAGA+AGG 0.495433 1.4:-999182 None:intergenic
GGGAAGTCAAACATATGATC+AGG 0.498477 1.4:-998744 None:intergenic
GAAAAGGCTAAAAGTGTTGG+AGG 0.498865 1.4:+995502 MS.gene63996:CDS
ATGTTTGAGACCGAGGAATC+GGG 0.501076 1.4:+997799 MS.gene63996:CDS
AGAGTTGTCTCGCAGAGAAA+AGG 0.502279 1.4:-999330 None:intergenic
CAGGCTGAATGGGATGAGCC+AGG 0.504340 1.4:+998151 MS.gene63996:intron
ATCTTGTGTAGGGAATTTGT+GGG 0.505590 1.4:+999886 MS.gene63996:intron
AACAACTAGTTCTTGAGTTG+GGG 0.512403 1.4:-996636 None:intergenic
CTGTTTACAATAGAAGAATC+GGG 0.516285 1.4:-998945 None:intergenic
TACGTATACTAGTTTCCATC+CGG 0.523910 1.4:-999686 None:intergenic
TGTGTCATTGCCTCAAGTGG+GGG 0.524294 1.4:+995770 MS.gene63996:CDS
TTAAAGAGATGAGTGAAGAA+GGG 0.524881 1.4:+999947 MS.gene63996:CDS
TGCCAACCATGCAATCTTGA+GGG 0.526265 1.4:-999244 None:intergenic
CCGAGGAATCGGGTAAGCGC+AGG 0.529760 1.4:+997809 MS.gene63996:CDS
GAGATTTGCATGATAATACA+TGG 0.533645 1.4:+996660 MS.gene63996:CDS
CGCAGATAGACGTAGACGAA+TGG 0.538497 1.4:+998976 MS.gene63996:CDS
AACTTAAGTTCTAGTCAAGA+TGG 0.540183 1.4:+999266 MS.gene63996:CDS
CCATTGTTGTTGATCACCTG+TGG 0.540797 1.4:-998498 None:intergenic
GAATGGGATGAGCCAGGGTG+TGG 0.543031 1.4:+998157 MS.gene63996:CDS
TTCGGTTCCACGCAGAGCTG+CGG 0.543545 1.4:+996492 MS.gene63996:CDS
CCTGCGCTTACCCGATTCCT+CGG 0.545092 1.4:-997809 None:intergenic
TTGTGTCATTGCCTCAAGTG+GGG 0.545165 1.4:+995769 MS.gene63996:CDS
GTGTGGTGATAAGCAAAATC+GGG 0.545815 1.4:+998174 MS.gene63996:CDS
CGAACAACTAGTTCTTGAGT+TGG 0.551901 1.4:-996638 None:intergenic
TGTTGCAGCTTTCAAAAGAT+GGG 0.552162 1.4:-998764 None:intergenic
TCAGCACCCTCAAGATTGCA+TGG 0.555417 1.4:+999238 MS.gene63996:CDS
GTATGCTCTCTGTGCTTGAA+AGG 0.557270 1.4:-998617 None:intergenic
TGGTATGATGTTTGAGACCG+AGG 0.557923 1.4:+997792 MS.gene63996:CDS
TGGAGCATGTCAATCATTTG+AGG 0.562075 1.4:-998921 None:intergenic
ACCTGTTCACTATGTCCTTG+AGG 0.562382 1.4:-995810 None:intergenic
TTCAATGAACCAAGAAGTGT+GGG 0.563061 1.4:+999046 MS.gene63996:CDS
TAGCAGAAGTAATCTGAGAC+TGG 0.563668 1.4:-999289 None:intergenic
TCAGCAGAAAGTACTGATGA+TGG 0.564399 1.4:-997513 None:intergenic
AACAACTGAGATGGAAGACT+AGG 0.565825 1.4:-996058 None:intergenic
CAAATCTCATGCCAGCTGAA+AGG 0.565921 1.4:-997771 None:intergenic
TGTGGACTTCATATCTTGCA+AGG 0.568033 1.4:-998568 None:intergenic
CTGAACAGCGGAGCATTGCA+AGG 0.572206 1.4:+999979 MS.gene63996:CDS
TGGTTCATTGAAGGTATCGA+GGG 0.572733 1.4:-999035 None:intergenic
AACTCCAACCCGTTGTGAGA+AGG 0.573060 1.4:-997102 None:intergenic
AAATAATGTTACCTTTGTGT+AGG 0.573136 1.4:-999444 None:intergenic
GTTGTGAGAAGGTGTCTCTT+CGG 0.575157 1.4:-997091 None:intergenic
CTTGTCTATTACTTCCCTCA+AGG 0.578102 1.4:+995795 MS.gene63996:CDS
GGATTGTAGAAAATCGTGAA+TGG 0.579311 1.4:-997591 None:intergenic
CTATGATGCAGAAAATGAGT+GGG 0.579800 1.4:+998362 MS.gene63996:intron
AATTGAATGCATGTTTGGAC+TGG 0.580066 1.4:+999636 MS.gene63996:CDS
TTGCCAACCATGCAATCTTG+AGG 0.582580 1.4:-999245 None:intergenic
TAATACAAAATTAGAATCTG+AGG 0.583985 1.4:+998716 MS.gene63996:CDS
CTTCAATGAACCAAGAAGTG+TGG 0.584734 1.4:+999045 MS.gene63996:CDS
TAAGGTGGCCTGGTTCTAAG+TGG 0.586460 1.4:+997967 MS.gene63996:CDS
ATATTTCGCCACTTAGAACC+AGG 0.586883 1.4:-997975 None:intergenic
GAACTAGTATGAGCGAGTAA+TGG 0.586998 1.4:-998855 None:intergenic
GACACCTTCTCACAACGGGT+TGG 0.588416 1.4:+997098 MS.gene63996:CDS
CTATATAGCCTTACCAATGG+AGG 0.589175 1.4:-996526 None:intergenic
ACTTGACACAACAACTGAGA+TGG 0.591159 1.4:-996067 None:intergenic
GTGTCATTGCCTCAAGTGGG+GGG 0.591608 1.4:+995771 MS.gene63996:CDS
ATCGAGGGATTCACTACTTG+AGG 0.592078 1.4:-999020 None:intergenic
TCGATTAGCAGCTGCATGAG+CGG 0.593060 1.4:-997565 None:intergenic
CCCAAATATCCGGATTGCAA+CGG 0.593442 1.4:-998268 None:intergenic
TGGATTCTCTATAACCTGTG+TGG 0.593849 1.4:-998586 None:intergenic
TTACAATAGAAGAATCGGGT+TGG 0.596283 1.4:-998941 None:intergenic
TTGGTTCATTGAAGGTATCG+AGG 0.596449 1.4:-999036 None:intergenic
AGTGTTGGAGGAGTTGTTGG+TGG 0.597797 1.4:+995514 MS.gene63996:CDS
ATATAGCTTACAGAATTCAG+TGG 0.600450 1.4:-996263 None:intergenic
AGGCTGAATGGGATGAGCCA+GGG 0.604797 1.4:+998152 MS.gene63996:intron
GAGAAGTCGCAATTGCGAGT+TGG 0.609632 1.4:+997456 MS.gene63996:CDS
GGGTGAGAAACTTACTCCCA+AGG 0.617581 1.4:-999745 None:intergenic
ACAACTAGTTCTTGAGTTGG+GGG 0.617960 1.4:-996635 None:intergenic
ATGACACAAAAGGTTCCGGA+TGG 0.629064 1.4:+999671 MS.gene63996:CDS
GGTCTGCTGAATGACACAAA+AGG 0.630277 1.4:+999661 MS.gene63996:CDS
TACTTTCATCAAAATCAACA+TGG 0.633033 1.4:-999370 None:intergenic
AAAGAAATGCAAGAACATTG+TGG 0.633626 1.4:+995568 MS.gene63996:CDS
ACAACTGAGATGGAAGACTA+GGG 0.639765 1.4:-996057 None:intergenic
ACTTGAGGCAATGACACAAG+AGG 0.641095 1.4:-995765 None:intergenic
GTGGACTTCATATCTTGCAA+GGG 0.645449 1.4:-998567 None:intergenic
CCACAGGTGATCAACAACAA+TGG 0.657687 1.4:+998498 MS.gene63996:CDS
GACATTGATGATTCTAACTG+AGG 0.657820 1.4:-998894 None:intergenic
CATTCGTCTACGTCTATCTG+CGG 0.660180 1.4:-998975 None:intergenic
GCTAGTGATACTAGCACACA+TGG 0.660819 1.4:+996463 MS.gene63996:CDS
TCTCTGCGAGACAACTCTGG+TGG 0.660933 1.4:+999335 MS.gene63996:CDS
AGTAGAAGGATCAACCATAG+TGG 0.662515 1.4:-999168 None:intergenic
ACCCGAAAATGAAGGAACAG+TGG 0.665241 1.4:+998416 MS.gene63996:CDS
CTTGAGGCAATGACACAAGA+GGG 0.667127 1.4:-995764 None:intergenic
CAAACATGCATTCAATTGCG+CGG 0.668814 1.4:-999630 None:intergenic
GAATGCATGTTTGGACTGGA+CGG 0.670392 1.4:+999640 MS.gene63996:CDS
GGGATGAAGCTTCTGAACAG+CGG 0.672458 1.4:+999967 MS.gene63996:CDS
TCTTGTGTAGGGAATTTGTG+GGG 0.680812 1.4:+999887 MS.gene63996:intron
TCTATGATGCAGAAAATGAG+TGG 0.683454 1.4:+998361 MS.gene63996:intron
GCAAGATATGAAGTCCACAC+AGG 0.685567 1.4:+998572 MS.gene63996:CDS
AGTGGAATAACAAAATCCGA+AGG 0.692028 1.4:-997715 None:intergenic
GTGATGTCGATCCTTTAAGG+TGG 0.692501 1.4:+997952 MS.gene63996:CDS
AGGGTAGTTTGGAATCTGTG+AGG 0.694049 1.4:-996038 None:intergenic
TCTGCTGATAGCATGCACAT+TGG 0.695779 1.4:+997528 MS.gene63996:CDS
TATGATGCAGAAAATGAGTG+GGG 0.696824 1.4:+998363 MS.gene63996:intron
GTGATAATATTCGTATACAG+CGG 0.703562 1.4:-999915 None:intergenic
GAAGAGACACCTTCTCACAA+CGG 0.710470 1.4:+997093 MS.gene63996:CDS
ACCAATCCGAACCTACACAA+AGG 0.719172 1.4:+999433 MS.gene63996:CDS
ACATTTCGACATATCTACCG+AGG 0.754798 1.4:+996683 MS.gene63996:CDS
AGTGATACTAGCACACATGG+TGG 0.770082 1.4:+996466 MS.gene63996:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAAGTTTTAATATCTAAAA+AGG - chr1.4:999852-999871 None:intergenic 10.0%
!!! AAAGTTTTAATATCTAAAAA+GGG - chr1.4:999851-999870 None:intergenic 10.0%
!!! TTTTTAGATATTAAAACTTT+TGG + chr1.4:999851-999870 MS.gene63996:intron 10.0%
!!! TTTTTTCTTAATTTTTACAA+TGG + chr1.4:995611-995630 MS.gene63996:intron 10.0%
!! AAAAATTAAGAAAAAAGAGA+AGG - chr1.4:995607-995626 None:intergenic 15.0%
!! AAATATAGAAAATCTGTTTA+TGG + chr1.4:997742-997761 MS.gene63996:CDS 15.0%
!! AAATTTCTTTGTAAATAAAC+AGG + chr1.4:998132-998151 MS.gene63996:intron 15.0%
!! AATATAGAAAATCTGTTTAT+GGG + chr1.4:997743-997762 MS.gene63996:CDS 15.0%
!! ATCTAAAAATATTATATGTC+AGG - chr1.4:997646-997665 None:intergenic 15.0%
!! TTTGATTATAATATGTTAGT+TGG - chr1.4:998815-998834 None:intergenic 15.0%
!!! AGATTCTAATTTTGTATTAT+TGG - chr1.4:998715-998734 None:intergenic 15.0%
!!! ATAAACAGATTTTCTATATT+TGG - chr1.4:997743-997762 None:intergenic 15.0%
!!! ATTTTGATTTGATTGATATT+TGG + chr1.4:995675-995694 MS.gene63996:intron 15.0%
!!! CAATTTTTTCAGATTATTAT+CGG + chr1.4:996816-996835 MS.gene63996:intron 15.0%
!!! TAAGTTTAATAGTCTTATTT+TGG + chr1.4:999799-999818 MS.gene63996:intron 15.0%
!!! TAATTTTGTATTATTGGTTT+TGG - chr1.4:998709-998728 None:intergenic 15.0%
!!! TATTATTTTTCATTTGTGTT+AGG + chr1.4:996360-996379 MS.gene63996:intron 15.0%
!! AATGGTATATCTTAATAACT+GGG - chr1.4:998025-998044 None:intergenic 20.0%
!! AGACATTAAATTCAGAATTA+TGG + chr1.4:995727-995746 MS.gene63996:CDS 20.0%
!! ATTGTACATCTAAATGTTAT+TGG + chr1.4:996319-996338 MS.gene63996:intron 20.0%
!! ATTTATGTAGAGATGATTAT+TGG - chr1.4:997399-997418 None:intergenic 20.0%
!! CTTAATCTTAGTAATATAGT+CGG + chr1.4:998102-998121 MS.gene63996:intron 20.0%
!! TAATACAAAATTAGAATCTG+AGG + chr1.4:998716-998735 MS.gene63996:CDS 20.0%
!! TTTCAATATTAGGAAAATTG+TGG + chr1.4:997338-997357 MS.gene63996:intron 20.0%
!!! AATATTTTTAGATCTAATCG+TGG + chr1.4:997653-997672 MS.gene63996:intron 20.0%
!!! ATGTAATGGTTTTCAATATT+AGG + chr1.4:997328-997347 MS.gene63996:intron 20.0%
!!! ATTGTAGTTTTAAGTTTCTT+TGG + chr1.4:995908-995927 MS.gene63996:intron 20.0%
!!! GTTGTACTAATTTTTGTTTA+GGG + chr1.4:995697-995716 MS.gene63996:intron 20.0%
!!! TAACATTATTTCTGTAATGT+TGG + chr1.4:999456-999475 MS.gene63996:intron 20.0%
!!! TTGTACTAATTTTTGTTTAG+GGG + chr1.4:995698-995717 MS.gene63996:intron 20.0%
!!! TTTACAATGGTTATGTTTTA+TGG + chr1.4:995624-995643 MS.gene63996:intron 20.0%
! AAAACACACTAATCAAATGA+GGG - chr1.4:996592-996611 None:intergenic 25.0%
! AAAATAACAAGTTGCTAATC+AGG - chr1.4:997367-997386 None:intergenic 25.0%
! AAAATATTATATGTCAGGTG+AGG - chr1.4:997641-997660 None:intergenic 25.0%
! AAACATATTTAGGTATACCT+TGG - chr1.4:997615-997634 None:intergenic 25.0%
! AAATAATGTTACCTTTGTGT+AGG - chr1.4:999447-999466 None:intergenic 25.0%
! AAATTTAGGGAAAACATGTA+AGG - chr1.4:997057-997076 None:intergenic 25.0%
! ACTGCAACTTTATTATTGTT+TGG + chr1.4:996964-996983 MS.gene63996:intron 25.0%
! ATAGTTACATTGCAATGTAA+TGG + chr1.4:997314-997333 MS.gene63996:intron 25.0%
! ATGGTATATCTTAATAACTG+GGG - chr1.4:998024-998043 None:intergenic 25.0%
! ATTACATTGCAATGTAACTA+TGG - chr1.4:997315-997334 None:intergenic 25.0%
! CGACTATATTACTAAGATTA+AGG - chr1.4:998104-998123 None:intergenic 25.0%
! CTATAAAACATACTCTATGT+TGG + chr1.4:998077-998096 MS.gene63996:intron 25.0%
! CTCTGTTATTATCTGAATAT+AGG + chr1.4:997228-997247 MS.gene63996:intron 25.0%
! CTGCAACTTTATTATTGTTT+GGG + chr1.4:996965-996984 MS.gene63996:intron 25.0%
! GAATGGTATATCTTAATAAC+TGG - chr1.4:998026-998045 None:intergenic 25.0%
! TACTTTCATCAAAATCAACA+TGG - chr1.4:999373-999392 None:intergenic 25.0%
! TATACAAGATCGAAACAAAT+TGG - chr1.4:999503-999522 None:intergenic 25.0%
! TCAAAACATACAAGTTAAAG+TGG - chr1.4:996192-996211 None:intergenic 25.0%
! TCAACTATTATAGTTAGTTC+AGG - chr1.4:997882-997901 None:intergenic 25.0%
! TGACCTACATGAAAAATTTA+GGG - chr1.4:997070-997089 None:intergenic 25.0%
! TGATGTGTTAATTGTTACAA+GGG + chr1.4:997431-997450 MS.gene63996:intron 25.0%
! TTCTTATTCTGCAGATATAT+GGG + chr1.4:997912-997931 MS.gene63996:intron 25.0%
!! ACCTTCAAAATAATTAGTCT+TGG + chr1.4:997010-997029 MS.gene63996:intron 25.0%
!! TTTCCCTAAATTTTTCATGT+AGG + chr1.4:997064-997083 MS.gene63996:intron 25.0%
!!! AACTTGTATGTTTTGATGAT+AGG + chr1.4:996196-996215 MS.gene63996:intron 25.0%
!!! AAGTACAAGACATTTTGATA+AGG - chr1.4:998319-998338 None:intergenic 25.0%
!!! AGATTCTAGTTTCTATTGAA+TGG + chr1.4:995943-995962 MS.gene63996:intron 25.0%
!!! ATGTCAAGAATTTTAACTTG+AGG + chr1.4:999075-999094 MS.gene63996:CDS 25.0%
!!! ATTGGTTTGGTAAAATAAAC+AGG + chr1.4:996899-996918 MS.gene63996:intron 25.0%
!!! ATTTTCGGGTACTTTAATAA+AGG - chr1.4:998406-998425 None:intergenic 25.0%
!!! GGTTGTACTAATTTTTGTTT+AGG + chr1.4:995696-995715 MS.gene63996:intron 25.0%
!!! TCCAAGACTAATTATTTTGA+AGG - chr1.4:997014-997033 None:intergenic 25.0%
!!! TGTCAAGAATTTTAACTTGA+GGG + chr1.4:999076-999095 MS.gene63996:CDS 25.0%
!!! TGTTTATTTTACCAAACCAA+TGG - chr1.4:996900-996919 None:intergenic 25.0%
!!! TTTTCGGGTACTTTAATAAA+GGG - chr1.4:998405-998424 None:intergenic 25.0%
AAAACAGTTCAGAAGAATTC+AGG - chr1.4:997841-997860 None:intergenic 30.0%
AAAGAAATGCAAGAACATTG+TGG + chr1.4:995568-995587 MS.gene63996:CDS 30.0%
ACAGAGTTTCTTATCATGTT+TGG - chr1.4:997214-997233 None:intergenic 30.0%
AGATATATGGGTACAATTGT+AGG + chr1.4:997924-997943 MS.gene63996:intron 30.0%
ATAGTTCAATCTATGTCCAT+TGG + chr1.4:996881-996900 MS.gene63996:intron 30.0%
ATATAGCTTACAGAATTCAG+TGG - chr1.4:996266-996285 None:intergenic 30.0%
ATCAAACATTACACGAAAGA+AGG - chr1.4:999769-999788 None:intergenic 30.0%
ATGTAGAGATGATTATTGGT+TGG - chr1.4:997395-997414 None:intergenic 30.0%
CAAAACACACTAATCAAATG+AGG - chr1.4:996593-996612 None:intergenic 30.0%
CAACAATGAATGCATGTTAA+AGG - chr1.4:998652-998671 None:intergenic 30.0%
CAACATCGAAAAAGTGAATA+CGG + chr1.4:998785-998804 MS.gene63996:CDS 30.0%
CATTGACACAAATTTCACTT+TGG - chr1.4:999124-999143 None:intergenic 30.0%
CTGACCTACATGAAAAATTT+AGG - chr1.4:997071-997090 None:intergenic 30.0%
CTGTTTACAATAGAAGAATC+GGG - chr1.4:998948-998967 None:intergenic 30.0%
CTTCTTATTCTGCAGATATA+TGG + chr1.4:997911-997930 MS.gene63996:intron 30.0%
GAGATTTGCATGATAATACA+TGG + chr1.4:996660-996679 MS.gene63996:CDS 30.0%
GCTGTTTACAATAGAAGAAT+CGG - chr1.4:998949-998968 None:intergenic 30.0%
GGTGAGGTATAAACATATTT+AGG - chr1.4:997625-997644 None:intergenic 30.0%
GTGATAATATTCGTATACAG+CGG - chr1.4:999918-999937 None:intergenic 30.0%
GTGATGTGTTAATTGTTACA+AGG + chr1.4:997430-997449 MS.gene63996:intron 30.0%
TAGAAATGCACAACAAAAAG+TGG - chr1.4:996135-996154 None:intergenic 30.0%
TCAAACATTACACGAAAGAA+GGG - chr1.4:999768-999787 None:intergenic 30.0%
TCAAAGAAGGAAAGATGAAA+AGG - chr1.4:998231-998250 None:intergenic 30.0%
TCTTGAGTGTATTATTTGCA+GGG + chr1.4:997687-997706 MS.gene63996:intron 30.0%
TGTAAATAAACAGGCTGAAT+GGG + chr1.4:998141-998160 MS.gene63996:intron 30.0%
TTAAAGAGATGAGTGAAGAA+GGG + chr1.4:999947-999966 MS.gene63996:CDS 30.0%
TTCGATCTTGTATATCATGA+TGG + chr1.4:999509-999528 MS.gene63996:intron 30.0%
TTCTGCAGAATAATAACTCT+TGG + chr1.4:999396-999415 MS.gene63996:CDS 30.0%
TTCTTGAGTGTATTATTTGC+AGG + chr1.4:997686-997705 MS.gene63996:intron 30.0%
TTGTAAATAAACAGGCTGAA+TGG + chr1.4:998140-998159 MS.gene63996:intron 30.0%
TTGTTGCATGATAGGTAAAA+AGG - chr1.4:998526-998545 None:intergenic 30.0%
TTTCAGATTATTATCGGTGT+CGG + chr1.4:996822-996841 MS.gene63996:intron 30.0%
! AAAATGGTGTTTGAAGTAGA+AGG - chr1.4:999185-999204 None:intergenic 30.0%
! AACTTAAGTTCTAGTCAAGA+TGG + chr1.4:999266-999285 MS.gene63996:CDS 30.0%
! ACACCATTAATCTAAAGTGT+AGG - chr1.4:996744-996763 None:intergenic 30.0%
! ACATCTTCATCATGTTTTCT+TGG - chr1.4:998470-998489 None:intergenic 30.0%
! ATGTTTTCTTGGTAGAGATT+TGG - chr1.4:998459-998478 None:intergenic 30.0%
! ATTAAAGTACCCGAAAATGA+AGG + chr1.4:998408-998427 MS.gene63996:CDS 30.0%
! CTCATTTGATTAGTGTGTTT+TGG + chr1.4:996591-996610 MS.gene63996:intron 30.0%
! GAAGATGTTTTATAAACCAC+AGG + chr1.4:998482-998501 MS.gene63996:CDS 30.0%
! GTTTGTGTTTTGTCCTTTTA+AGG + chr1.4:995988-996007 MS.gene63996:intron 30.0%
! GTTTTTCTGCAAAACTTTGA+CGG + chr1.4:996441-996460 MS.gene63996:CDS 30.0%
!! ACAAGACATTTTGATAAGGT+GGG - chr1.4:998315-998334 None:intergenic 30.0%
!! ACTTTTAGCCTTTTCTTCTA+AGG - chr1.4:995497-995516 None:intergenic 30.0%
!! TACAAGACATTTTGATAAGG+TGG - chr1.4:998316-998335 None:intergenic 30.0%
!! TGCATGTTAAAGGTGTTATT+AGG - chr1.4:998642-998661 None:intergenic 30.0%
!!! ATGGATTTTGAGTTTGGTTT+TGG - chr1.4:998839-998858 None:intergenic 30.0%
!!! GATTAGTGTGTTTTGGTTTT+AGG + chr1.4:996598-996617 MS.gene63996:intron 30.0%
AAGAAACGTACCCAAATATC+CGG - chr1.4:998281-998300 None:intergenic 35.0%
AATTGAATGCATGTTTGGAC+TGG + chr1.4:999636-999655 MS.gene63996:CDS 35.0%
ACAATGTTGTGATCTTGTGT+AGG + chr1.4:999875-999894 MS.gene63996:intron 35.0%
AGTGGAATAACAAAATCCGA+AGG - chr1.4:997718-997737 None:intergenic 35.0%
ATCTTGTGTAGGGAATTTGT+GGG + chr1.4:999886-999905 MS.gene63996:intron 35.0%
ATGTTACCTTTGTGTAGGTT+CGG - chr1.4:999442-999461 None:intergenic 35.0%
ATTGTTGAAAAGTGAGCAAC+CGG + chr1.4:998665-998684 MS.gene63996:CDS 35.0%
CAATGTTGTGATCTTGTGTA+GGG + chr1.4:999876-999895 MS.gene63996:intron 35.0%
CATAATTATCCCACACTTCT+TGG - chr1.4:999058-999077 None:intergenic 35.0%
CTATGATGCAGAAAATGAGT+GGG + chr1.4:998362-998381 MS.gene63996:intron 35.0%
CTTTAGATTAATGGTGTGTC+CGG + chr1.4:996747-996766 MS.gene63996:intron 35.0%
GATGGTATTTATTGTGTCTG+TGG + chr1.4:999527-999546 MS.gene63996:intron 35.0%
GCACCTACACTTTAGATTAA+TGG + chr1.4:996738-996757 MS.gene63996:intron 35.0%
GCATAATCTTGTTGCATGAT+AGG - chr1.4:998534-998553 None:intergenic 35.0%
GGAATAAATGTTTGTGCTTG+TGG + chr1.4:996920-996939 MS.gene63996:intron 35.0%
GGATTGTAGAAAATCGTGAA+TGG - chr1.4:997594-997613 None:intergenic 35.0%
GTTAAAGAGATGAGTGAAGA+AGG + chr1.4:999946-999965 MS.gene63996:CDS 35.0%
TAAGGCTATATAGCACTAGT+TGG + chr1.4:996536-996555 MS.gene63996:intron 35.0%
TAATAGTGTCAGTACCACTA+TGG + chr1.4:999154-999173 MS.gene63996:CDS 35.0%
TATGATGCAGAAAATGAGTG+GGG + chr1.4:998363-998382 MS.gene63996:intron 35.0%
TCTATGATGCAGAAAATGAG+TGG + chr1.4:998361-998380 MS.gene63996:intron 35.0%
TCTTGTACAGCCATAAAAGA+GGG - chr1.4:996568-996587 None:intergenic 35.0%
TGTTGCAGCTTTCAAAAGAT+GGG - chr1.4:998767-998786 None:intergenic 35.0%
TTACAATAGAAGAATCGGGT+TGG - chr1.4:998944-998963 None:intergenic 35.0%
TTCTAAGTGGCGAAATATTC+AGG + chr1.4:997980-997999 MS.gene63996:CDS 35.0%
TTCTTGTACAGCCATAAAAG+AGG - chr1.4:996569-996588 None:intergenic 35.0%
TTGTTGCAGCTTTCAAAAGA+TGG - chr1.4:998768-998787 None:intergenic 35.0%
TTTAGGCTTGAAGTCAAAGA+AGG - chr1.4:998244-998263 None:intergenic 35.0%
TTTAGTCCAAACTCAGATAC+TGG - chr1.4:996400-996419 None:intergenic 35.0%
! AACAACTAGTTCTTGAGTTG+GGG - chr1.4:996639-996658 None:intergenic 35.0%
! AACTATGTGTGTTTGAGATC+AGG - chr1.4:996791-996810 None:intergenic 35.0%
! CTCATCTCTTTAACTTCTGA+AGG - chr1.4:999940-999959 None:intergenic 35.0%
! CTTTGACTTCAAGCCTAAAA+CGG + chr1.4:998245-998264 MS.gene63996:CDS 35.0%
! GAACAACTAGTTCTTGAGTT+GGG - chr1.4:996640-996659 None:intergenic 35.0%
! GAAGAAAAGGCTAAAAGTGT+TGG + chr1.4:995499-995518 MS.gene63996:CDS 35.0%
! GACATTGATGATTCTAACTG+AGG - chr1.4:998897-998916 None:intergenic 35.0%
! GATTTTCTATATTTGGCCAG+TGG - chr1.4:997736-997755 None:intergenic 35.0%
! GCGATTCTGTTCTTTTTATC+AGG + chr1.4:997155-997174 MS.gene63996:CDS 35.0%
! GTTTTGCAGAAAAACTCAGT+TGG - chr1.4:996436-996455 None:intergenic 35.0%
! TAATCTAAAGTGTAGGTGCT+AGG - chr1.4:996737-996756 None:intergenic 35.0%
! TACGTATACTAGTTTCCATC+CGG - chr1.4:999689-999708 None:intergenic 35.0%
! TCAATCTATGTCCATTGGTT+TGG + chr1.4:996886-996905 MS.gene63996:intron 35.0%
! TCACGATTTTCTACAATCCA+AGG + chr1.4:997595-997614 MS.gene63996:CDS 35.0%
! TTCAATGAACCAAGAAGTGT+GGG + chr1.4:999046-999065 MS.gene63996:CDS 35.0%
! TTGCTCACTAGTGGTTATTT+TGG + chr1.4:998337-998356 MS.gene63996:intron 35.0%
!!! CGAGTAATGGATTTTGAGTT+TGG - chr1.4:998845-998864 None:intergenic 35.0%
!!! GTATTATTGGTTTTGGCGAT+AGG - chr1.4:998702-998721 None:intergenic 35.0%
!!! TTCGGATTTTGTTATTCCAC+TGG + chr1.4:997717-997736 MS.gene63996:CDS 35.0%
AACAACTGAGATGGAAGACT+AGG - chr1.4:996061-996080 None:intergenic 40.0%
AAGTGGCGAAATATTCAGGT+AGG + chr1.4:997984-998003 MS.gene63996:intron 40.0%
ACAACTGAGATGGAAGACTA+GGG - chr1.4:996060-996079 None:intergenic 40.0%
ACATTTCGACATATCTACCG+AGG + chr1.4:996683-996702 MS.gene63996:CDS 40.0%
ACCATACAATTAGTCGCGAA+TGG - chr1.4:998043-998062 None:intergenic 40.0%
ACCATTCGCGACTAATTGTA+TGG + chr1.4:998039-998058 MS.gene63996:intron 40.0%
ACTTGACACAACAACTGAGA+TGG - chr1.4:996070-996089 None:intergenic 40.0%
AGCTTACAGAATTCAGTGGT+TGG - chr1.4:996262-996281 None:intergenic 40.0%
AGTAGAAGGATCAACCATAG+TGG - chr1.4:999171-999190 None:intergenic 40.0%
ATATTTCGCCACTTAGAACC+AGG - chr1.4:997978-997997 None:intergenic 40.0%
CAAACATGCATTCAATTGCG+CGG - chr1.4:999633-999652 None:intergenic 40.0%
CACACTTCTTGGTTCATTGA+AGG - chr1.4:999047-999066 None:intergenic 40.0%
CTGAATGACACAAAAGGTTC+CGG + chr1.4:999667-999686 MS.gene63996:CDS 40.0%
CTTCAATGAACCAAGAAGTG+TGG + chr1.4:999045-999064 MS.gene63996:CDS 40.0%
CTTGTCTATTACTTCCCTCA+AGG + chr1.4:995795-995814 MS.gene63996:CDS 40.0%
GAACTAGTATGAGCGAGTAA+TGG - chr1.4:998858-998877 None:intergenic 40.0%
GATCTTGTGTAGGGAATTTG+TGG + chr1.4:999885-999904 MS.gene63996:intron 40.0%
GGAAAGATGAAAAGGCTTTC+TGG - chr1.4:998223-998242 None:intergenic 40.0%
GGGAAGTCAAACATATGATC+AGG - chr1.4:998747-998766 None:intergenic 40.0%
GGTGTGGTGATAAGCAAAAT+CGG + chr1.4:998173-998192 MS.gene63996:CDS 40.0%
GTAGAAGCTGCAACCTTAAA+AGG - chr1.4:996004-996023 None:intergenic 40.0%
GTGGACTTCATATCTTGCAA+GGG - chr1.4:998570-998589 None:intergenic 40.0%
GTGTGGTGATAAGCAAAATC+GGG + chr1.4:998174-998193 MS.gene63996:CDS 40.0%
GTGTTTCCAGTATCTGAGTT+TGG + chr1.4:996391-996410 MS.gene63996:CDS 40.0%
TCAGTGATGTCGATCCTTTA+AGG + chr1.4:997949-997968 MS.gene63996:CDS 40.0%
TCTTGTGTAGGGAATTTGTG+GGG + chr1.4:999887-999906 MS.gene63996:intron 40.0%
TGAGCAAAAGTCGTCGAAAA+TGG - chr1.4:999201-999220 None:intergenic 40.0%
TGCAGAAAATATCCTCACCT+CGG - chr1.4:996703-996722 None:intergenic 40.0%
TGGAGCATGTCAATCATTTG+AGG - chr1.4:998924-998943 None:intergenic 40.0%
TGGATTCTCTATAACCTGTG+TGG - chr1.4:998589-998608 None:intergenic 40.0%
TGTAAGGATCTAACACGATC+AGG - chr1.4:997041-997060 None:intergenic 40.0%
TGTGGACTTCATATCTTGCA+AGG - chr1.4:998571-998590 None:intergenic 40.0%
! CGAACAACTAGTTCTTGAGT+TGG - chr1.4:996641-996660 None:intergenic 40.0%
! CTATATAGCCTTACCAATGG+AGG - chr1.4:996529-996548 None:intergenic 40.0%
! CTCCACTGTTCCTTCATTTT+CGG - chr1.4:998421-998440 None:intergenic 40.0%
! GTGCTATATAGCCTTACCAA+TGG - chr1.4:996532-996551 None:intergenic 40.0%
! GTGCTTGAAAGGTGAACTTT+TGG - chr1.4:998609-998628 None:intergenic 40.0%
! TAGCAGAAGTAATCTGAGAC+TGG - chr1.4:999292-999311 None:intergenic 40.0%
! TCCACTGTTCCTTCATTTTC+GGG - chr1.4:998420-998439 None:intergenic 40.0%
! TCTTGCAAGGGAACTCTTTT+AGG - chr1.4:998558-998577 None:intergenic 40.0%
!! AAAAGTGTTGGAGGAGTTGT+TGG + chr1.4:995511-995530 MS.gene63996:CDS 40.0%
!! ACAACTAGTTCTTGAGTTGG+GGG - chr1.4:996638-996657 None:intergenic 40.0%
!! AGCAAAATCGGGTTAGTGTT+TGG + chr1.4:998185-998204 MS.gene63996:CDS 40.0%
!! GAAAAGGCTAAAAGTGTTGG+AGG + chr1.4:995502-995521 MS.gene63996:CDS 40.0%
!! GCAAAATCGGGTTAGTGTTT+GGG + chr1.4:998186-998205 MS.gene63996:CDS 40.0%
!! GTTTGTTTGTCGGCTCAAAA+AGG + chr1.4:997122-997141 MS.gene63996:CDS 40.0%
!! GTTTTGATGATAGGCTGACA+AGG + chr1.4:996205-996224 MS.gene63996:intron 40.0%
!! TCAGCAGAAAGTACTGATGA+TGG - chr1.4:997516-997535 None:intergenic 40.0%
!! TGGTTCATTGAAGGTATCGA+GGG - chr1.4:999038-999057 None:intergenic 40.0%
!! TTGGTTCATTGAAGGTATCG+AGG - chr1.4:999039-999058 None:intergenic 40.0%
AAGAGACACCTTCTCACAAC+GGG + chr1.4:997094-997113 MS.gene63996:CDS 45.0%
ACCAATCCGAACCTACACAA+AGG + chr1.4:999433-999452 MS.gene63996:CDS 45.0%
ACCCGAAAATGAAGGAACAG+TGG + chr1.4:998416-998435 MS.gene63996:CDS 45.0%
ACCTGTTCACTATGTCCTTG+AGG - chr1.4:995813-995832 None:intergenic 45.0%
ACCTTTGTGTAGGTTCGGAT+TGG - chr1.4:999437-999456 None:intergenic 45.0%
ACTTGAGGCAATGACACAAG+AGG - chr1.4:995768-995787 None:intergenic 45.0%
AGAGTTGTCTCGCAGAGAAA+AGG - chr1.4:999333-999352 None:intergenic 45.0%
AGTGATACTAGCACACATGG+TGG + chr1.4:996466-996485 MS.gene63996:CDS 45.0%
ATCGAGGGATTCACTACTTG+AGG - chr1.4:999023-999042 None:intergenic 45.0%
ATGACACAAAAGGTTCCGGA+TGG + chr1.4:999671-999690 MS.gene63996:CDS 45.0%
CAAATCTCATGCCAGCTGAA+AGG - chr1.4:997774-997793 None:intergenic 45.0%
CATTCGTCTACGTCTATCTG+CGG - chr1.4:998978-998997 None:intergenic 45.0%
CCACAGGTGATCAACAACAA+TGG + chr1.4:998498-998517 MS.gene63996:CDS 45.0%
CCCAAATATCCGGATTGCAA+CGG - chr1.4:998271-998290 None:intergenic 45.0%
CCGTTGCAATCCGGATATTT+GGG + chr1.4:998268-998287 MS.gene63996:CDS 45.0%
CCTGTTCACTATGTCCTTGA+GGG - chr1.4:995812-995831 None:intergenic 45.0%
CGCGCAATTGAATGCATGTT+TGG + chr1.4:999631-999650 MS.gene63996:CDS 45.0%
CTTGAGGCAATGACACAAGA+GGG - chr1.4:995767-995786 None:intergenic 45.0%
CTTTCAGCTGGCATGAGATT+TGG + chr1.4:997772-997791 MS.gene63996:CDS 45.0%
GAAGAGACACCTTCTCACAA+CGG + chr1.4:997093-997112 MS.gene63996:CDS 45.0%
GAATTATGGCATGCTTGTGC+TGG + chr1.4:995741-995760 MS.gene63996:CDS 45.0%
GAGAGTGATGTTCTGCTAGT+TGG + chr1.4:999715-999734 MS.gene63996:CDS 45.0%
GATGGAAGACTAGGGTAGTT+TGG - chr1.4:996052-996071 None:intergenic 45.0%
GCAAGATATGAAGTCCACAC+AGG + chr1.4:998572-998591 MS.gene63996:CDS 45.0%
GCTAGTGATACTAGCACACA+TGG + chr1.4:996463-996482 MS.gene63996:CDS 45.0%
GCTAGTTGGAGATGATCCTT+GGG + chr1.4:999729-999748 MS.gene63996:CDS 45.0%
GGCTCAAAAAGGCTTAAAGC+AGG + chr1.4:997133-997152 MS.gene63996:CDS 45.0%
GGTCTGCTGAATGACACAAA+AGG + chr1.4:999661-999680 MS.gene63996:CDS 45.0%
GTATGCTCTCTGTGCTTGAA+AGG - chr1.4:998620-998639 None:intergenic 45.0%
GTCTGACGCATATCATACAC+CGG - chr1.4:996769-996788 None:intergenic 45.0%
GTCTTGTACTTGCTCACTAG+TGG + chr1.4:998328-998347 MS.gene63996:intron 45.0%
GTGCAAAAAGCAGGTTCTGT+AGG + chr1.4:999562-999581 MS.gene63996:CDS 45.0%
TATTTGCAGGGCATGTCCTT+CGG + chr1.4:997699-997718 MS.gene63996:intron 45.0%
TCTGCTGATAGCATGCACAT+TGG + chr1.4:997528-997547 MS.gene63996:CDS 45.0%
TGCCAACCATGCAATCTTGA+GGG - chr1.4:999247-999266 None:intergenic 45.0%
TGCTAGTTGGAGATGATCCT+TGG + chr1.4:999728-999747 MS.gene63996:CDS 45.0%
TTAGAACCAGGCCACCTTAA+AGG - chr1.4:997966-997985 None:intergenic 45.0%
TTGCCAACCATGCAATCTTG+AGG - chr1.4:999248-999267 None:intergenic 45.0%
! AGCTGTTTCCTCCATTGGTA+AGG + chr1.4:996518-996537 MS.gene63996:intron 45.0%
! AGGGTAGTTTGGAATCTGTG+AGG - chr1.4:996041-996060 None:intergenic 45.0%
! ATGTTTGAGACCGAGGAATC+GGG + chr1.4:997799-997818 MS.gene63996:CDS 45.0%
! CCATTGTTGTTGATCACCTG+TGG - chr1.4:998501-998520 None:intergenic 45.0%
! CTTGTGTCATTGCCTCAAGT+GGG + chr1.4:995768-995787 MS.gene63996:CDS 45.0%
! GAATGCATGTTTGGACTGGA+CGG + chr1.4:999640-999659 MS.gene63996:CDS 45.0%
! GATGTTTGAGACCGAGGAAT+CGG + chr1.4:997798-997817 MS.gene63996:CDS 45.0%
! GGAAAAGCTGTTTCCTCCAT+TGG + chr1.4:996513-996532 MS.gene63996:CDS 45.0%
! GTGATGTCGATCCTTTAAGG+TGG + chr1.4:997952-997971 MS.gene63996:CDS 45.0%
! TAGCACACATGGTGGCTTTT+CGG + chr1.4:996474-996493 MS.gene63996:CDS 45.0%
! TCTTGTGTCATTGCCTCAAG+TGG + chr1.4:995767-995786 MS.gene63996:CDS 45.0%
! TGGTATGATGTTTGAGACCG+AGG + chr1.4:997792-997811 MS.gene63996:CDS 45.0%
! TTGGTTGCGTCCCTCTTTTA+TGG + chr1.4:996555-996574 MS.gene63996:intron 45.0%
! TTGTGTCATTGCCTCAAGTG+GGG + chr1.4:995769-995788 MS.gene63996:CDS 45.0%
! TTTTCTCTGCGAGACAACTC+TGG + chr1.4:999332-999351 MS.gene63996:CDS 45.0%
! TTTTGCTTATCACCACACCC+TGG - chr1.4:998172-998191 None:intergenic 45.0%
!! ACGGGTTGGAGTTTGTTTGT+CGG + chr1.4:997112-997131 MS.gene63996:CDS 45.0%
!! GTTGTGAGAAGGTGTCTCTT+CGG - chr1.4:997094-997113 None:intergenic 45.0%
!!! ATCGGTGTCGGTTTTATGTG+TGG + chr1.4:996834-996853 MS.gene63996:intron 45.0%
AACTCCAACCCGTTGTGAGA+AGG - chr1.4:997105-997124 None:intergenic 50.0%
CACCCTCAAGATTGCATGGT+TGG + chr1.4:999242-999261 MS.gene63996:CDS 50.0%
CCCTCAAGGACATAGTGAAC+AGG + chr1.4:995809-995828 MS.gene63996:CDS 50.0%
CGCAGATAGACGTAGACGAA+TGG + chr1.4:998976-998995 MS.gene63996:CDS 50.0%
CTAAAACGGCCGTTGCAATC+CGG + chr1.4:998259-998278 MS.gene63996:CDS 50.0%
GAGAAGTCGCAATTGCGAGT+TGG + chr1.4:997456-997475 MS.gene63996:CDS 50.0%
GCCGTTGCAATCCGGATATT+TGG + chr1.4:998267-998286 MS.gene63996:CDS 50.0%
GGGATGAAGCTTCTGAACAG+CGG + chr1.4:999967-999986 MS.gene63996:CDS 50.0%
GGGTGAGAAACTTACTCCCA+AGG - chr1.4:999748-999767 None:intergenic 50.0%
GTGTGACAGGTGCAAAAAGC+AGG + chr1.4:999553-999572 MS.gene63996:intron 50.0%
TATGGGACTCACCTTTCAGC+TGG + chr1.4:997760-997779 MS.gene63996:CDS 50.0%
TCAGCACCCTCAAGATTGCA+TGG + chr1.4:999238-999257 MS.gene63996:CDS 50.0%
TCGACATATCTACCGAGGTG+AGG + chr1.4:996688-996707 MS.gene63996:intron 50.0%
TCGATTAGCAGCTGCATGAG+CGG - chr1.4:997568-997587 None:intergenic 50.0%
TCTAACTGAGGCTGCTGCAT+TGG - chr1.4:998885-998904 None:intergenic 50.0%
! AGTGTTGGAGGAGTTGTTGG+TGG + chr1.4:995514-995533 MS.gene63996:CDS 50.0%
! GCGATAGGCAGCAACTTTTC+CGG - chr1.4:998687-998706 None:intergenic 50.0%
! TGTGTCATTGCCTCAAGTGG+GGG + chr1.4:995770-995789 MS.gene63996:CDS 50.0%
!! CGCAATTGCGAGTTGGTGTA+AGG + chr1.4:997463-997482 MS.gene63996:CDS 50.0%
!! TAAGGTGGCCTGGTTCTAAG+TGG + chr1.4:997967-997986 MS.gene63996:CDS 50.0%
AGGCTGAATGGGATGAGCCA+GGG + chr1.4:998152-998171 MS.gene63996:intron 55.0%
GACACCTTCTCACAACGGGT+TGG + chr1.4:997098-997117 MS.gene63996:CDS 55.0%
GTGTCTGTGGTCTGTGTGAC+AGG + chr1.4:999540-999559 MS.gene63996:intron 55.0%
TAGACAAGACCCCCCACTTG+AGG - chr1.4:995783-995802 None:intergenic 55.0%
TCTCTGCGAGACAACTCTGG+TGG + chr1.4:999335-999354 MS.gene63996:CDS 55.0%
! GTGTCATTGCCTCAAGTGGG+GGG + chr1.4:995771-995790 MS.gene63996:CDS 55.0%
!! CGGATTGCAACGGCCGTTTT+AGG - chr1.4:998261-998280 None:intergenic 55.0%
!! CTGAACAGCGGAGCATTGCA+AGG + chr1.4:999979-999998 MS.gene63996:CDS 55.0%
!! GTCGATCCTTTAAGGTGGCC+TGG + chr1.4:997957-997976 MS.gene63996:CDS 55.0%
CAGGCTGAATGGGATGAGCC+AGG + chr1.4:998151-998170 MS.gene63996:intron 60.0%
CCTGCGCTTACCCGATTCCT+CGG - chr1.4:997812-997831 None:intergenic 60.0%
GAATGGGATGAGCCAGGGTG+TGG + chr1.4:998157-998176 MS.gene63996:CDS 60.0%
TTCGGTTCCACGCAGAGCTG+CGG + chr1.4:996492-996511 MS.gene63996:CDS 60.0%
! AGCTTTTCCGCAGCTCTGCG+TGG - chr1.4:996502-996521 None:intergenic 60.0%
CCGAGGAATCGGGTAAGCGC+AGG + chr1.4:997809-997828 MS.gene63996:CDS 65.0%


Chromosome Type Strat End Strand Name
chr1.4 gene 995487 1000014 995487 ID=MS.gene63996
chr1.4 mRNA 995487 1000014 995487 ID=MS.gene63996.t1;Parent=MS.gene63996
chr1.4 exon 995487 995589 995487 ID=MS.gene63996.t1.exon1;Parent=MS.gene63996.t1
chr1.4 CDS 995487 995589 995487 ID=cds.MS.gene63996.t1;Parent=MS.gene63996.t1
chr1.4 exon 995718 995830 995718 ID=MS.gene63996.t1.exon2;Parent=MS.gene63996.t1
chr1.4 CDS 995718 995830 995718 ID=cds.MS.gene63996.t1;Parent=MS.gene63996.t1
chr1.4 exon 996010 996108 996010 ID=MS.gene63996.t1.exon3;Parent=MS.gene63996.t1
chr1.4 CDS 996010 996108 996010 ID=cds.MS.gene63996.t1;Parent=MS.gene63996.t1
chr1.4 exon 996218 996274 996218 ID=MS.gene63996.t1.exon4;Parent=MS.gene63996.t1
chr1.4 CDS 996218 996274 996218 ID=cds.MS.gene63996.t1;Parent=MS.gene63996.t1
chr1.4 exon 996382 996534 996382 ID=MS.gene63996.t1.exon5;Parent=MS.gene63996.t1
chr1.4 CDS 996382 996534 996382 ID=cds.MS.gene63996.t1;Parent=MS.gene63996.t1
chr1.4 exon 996620 996704 996620 ID=MS.gene63996.t1.exon6;Parent=MS.gene63996.t1
chr1.4 CDS 996620 996704 996620 ID=cds.MS.gene63996.t1;Parent=MS.gene63996.t1
chr1.4 exon 997086 997176 997086 ID=MS.gene63996.t1.exon7;Parent=MS.gene63996.t1
chr1.4 CDS 997086 997176 997086 ID=cds.MS.gene63996.t1;Parent=MS.gene63996.t1
chr1.4 exon 997452 997616 997452 ID=MS.gene63996.t1.exon8;Parent=MS.gene63996.t1
chr1.4 CDS 997452 997616 997452 ID=cds.MS.gene63996.t1;Parent=MS.gene63996.t1
chr1.4 exon 997708 997830 997708 ID=MS.gene63996.t1.exon9;Parent=MS.gene63996.t1
chr1.4 CDS 997708 997830 997708 ID=cds.MS.gene63996.t1;Parent=MS.gene63996.t1
chr1.4 exon 997926 998001 997926 ID=MS.gene63996.t1.exon10;Parent=MS.gene63996.t1
chr1.4 CDS 997926 998001 997926 ID=cds.MS.gene63996.t1;Parent=MS.gene63996.t1
chr1.4 exon 998154 998289 998154 ID=MS.gene63996.t1.exon11;Parent=MS.gene63996.t1
chr1.4 CDS 998154 998289 998154 ID=cds.MS.gene63996.t1;Parent=MS.gene63996.t1
chr1.4 exon 998373 999454 998373 ID=MS.gene63996.t1.exon12;Parent=MS.gene63996.t1
chr1.4 CDS 998373 999454 998373 ID=cds.MS.gene63996.t1;Parent=MS.gene63996.t1
chr1.4 exon 999562 999752 999562 ID=MS.gene63996.t1.exon13;Parent=MS.gene63996.t1
chr1.4 CDS 999562 999752 999562 ID=cds.MS.gene63996.t1;Parent=MS.gene63996.t1
chr1.4 exon 999897 1000014 999897 ID=MS.gene63996.t1.exon14;Parent=MS.gene63996.t1
chr1.4 CDS 999897 1000014 999897 ID=cds.MS.gene63996.t1;Parent=MS.gene63996.t1
Gene Sequence

>MS.gene63996

ATGGCTTCCTTAGAAGAAAAGGCTAAAAGTGTTGGAGGAGTTGTTGGTGGTCAAACTCTTGTTGCTGAAATGAAGTTGCTCAAAGAAATGCAAGAACATTGTGGTAAGTTCATGTTTCCTTCTCTTTTTTCTTAATTTTTACAATGGTTATGTTTTATGGTTTCATAGTTTTCTTAGTAGAAATTGAGATTTTGATTTGATTGATATTTGGTTGTACTAATTTTTGTTTAGGGGTTAGAAAGACATTAAATTCAGAATTATGGCATGCTTGTGCTGGCCCTCTTGTGTCATTGCCTCAAGTGGGGGGTCTTGTCTATTACTTCCCTCAAGGACATAGTGAACAGGTAACATTCAAACTCAAGAATCTCTTTTTTATGTTTTAACATTTTTAAGTGCTAATTCATTCATTGCTTATGTTAGTATTGTAGTTTTAAGTTTCTTTGGTTAGAATTAGCAAGATTCTAGTTTCTATTGAATGGTTGAAACATGTGTTGAATTTTTGTTTGTGTTTTGTCCTTTTAAGGTTGCAGCTTCTACTAGAAGAATAGCTACCTCACAGATTCCAAACTACCCTAGTCTTCCATCTCAGTTGTTGTGTCAAGTACAAAATGTCACACTACATGTGAGTAGTGTTCTCTCGATTTACCACTTTTTGTTGTGCATTTCTACTTAATCACTCATTTCAACTTCAAATTATCATAACCACTTTAACTTGTATGTTTTGATGATAGGCTGACAAGGAGACAGATGAAATCTATGCTCAAATGACTCTCCAACCACTGAATTCTGTAAGCTATATGAAGTAGTTAGTTCTAGAATTATTGTTGTTGTTATTGTACATCTAAATGTTATTGGTTATGATTATTTTTGATGTATTATTTTTCATTTGTGTTAGGAAAAAGAAGTGTTTCCAGTATCTGAGTTTGGACTAAACAAAAGTAAACATCCAACTGAGTTTTTCTGCAAAACTTTGACGGCTAGTGATACTAGCACACATGGTGGCTTTTCGGTTCCACGCAGAGCTGCGGAAAAGCTGTTTCCTCCATTGGTAAGGCTATATAGCACTAGTTGGTTGCGTCCCTCTTTTATGGCTGTACAAGAACCCTCATTTGATTAGTGTGTTTTGGTTTTAGGATTACACAATTCAACCCCCAACTCAAGAACTAGTTGTTCGAGATTTGCATGATAATACATGGACATTTCGACATATCTACCGAGGTGAGGATATTTTCTGCATCTATGTAGCACCTAGCACCTACACTTTAGATTAATGGTGTGTCCGGTGTATGATATGCGTCAGACCTGATCTCAAACACACATAGTTACATTCAATTTTTTCAGATTATTATCGGTGTCGGTTTTATGTGTGGTGTTCGCATCTGTGTTAGTGCTTTATAGTTCAATCTATGTCCATTGGTTTGGTAAAATAAACAGGAATAAATGTTTGTGCTTGTGGATTATATATTGCATTATTTTAACTGCAACTTTATTATTGTTTGGGTTTCAATGTTTTCTTTATCTTAACCTTCAAAATAATTAGTCTTGGAAAAGCCTGATCGTGTTAGATCCTTACATGTTTTCCCTAAATTTTTCATGTAGGTCAGCCGAAGAGACACCTTCTCACAACGGGTTGGAGTTTGTTTGTCGGCTCAAAAAGGCTTAAAGCAGGCGATTCTGTTCTTTTTATCAGGTAAAATTTGTTTGCTTCATTTTTTGTCAAGTAGCCAAACATGATAAGAAACTCTGTTATTATCTGAATATAGGTAGAATAACTAGTGTGCAGAACAAAGTCTGCATACTTTTTTTAATTATACTTGTTTTTTCTCCATAGTTACATTGCAATGTAATGGTTTTCAATATTAGGAAAATTGTGGAATCCTGATTAGCAACTTGTTATTTTAAATTCCAACCAATAATCATCTCTACATAAATTAATACTAAATGTGATGTGTTAATTGTTACAAGGGATGAGAAGTCGCAATTGCGAGTTGGTGTAAGGCGTGCTAATCGTCAACAGACAACACTGCCATCATCAGTACTTTCTGCTGATAGCATGCACATTGGTGTGCTTGCTGCTGCCGCTCATGCAGCTGCTAATCGAAGTCCATTCACGATTTTCTACAATCCAAGGTATACCTAAATATGTTTATACCTCACCTGACATATAATATTTTTAGATCTAATCGTGGTACTAATTTCTTCTTGAGTGTATTATTTGCAGGGCATGTCCTTCGGATTTTGTTATTCCACTGGCCAAATATAGAAAATCTGTTTATGGGACTCACCTTTCAGCTGGCATGAGATTTGGTATGATGTTTGAGACCGAGGAATCGGGTAAGCGCAGGTAATTTCCTGAATTCTTCTGAACTGTTTTCTGTGATATGTGCAAACTCCTGAACTAACTATAATAGTTGATATATATTTCTTCTTATTCTGCAGATATATGGGTACAATTGTAGGTATCAGTGATGTCGATCCTTTAAGGTGGCCTGGTTCTAAGTGGCGAAATATTCAGGTAGGTTAAGTTCTAGTAACCCCAGTTATTAAGATATACCATTCGCGACTAATTGTATGGTTTCATCTAATATTTCTATAAAACATACTCTATGTTGGACCTTAATCTTAGTAATATAGTCGGCTTAAATAAATTTCTTTGTAAATAAACAGGCTGAATGGGATGAGCCAGGGTGTGGTGATAAGCAAAATCGGGTTAGTGTTTGGGAGATTGAGACTCCAGAAAGCCTTTTCATCTTTCCTTCTTTGACTTCAAGCCTAAAACGGCCGTTGCAATCCGGATATTTGGGTACGTTTCTTTATTCTCTATTCCCACCTTATCAAAATGTCTTGTACTTGCTCACTAGTGGTTATTTTGGTTCTATGATGCAGAAAATGAGTGGGGAACTTTGATACGAAGACCCTTTATTAAAGTACCCGAAAATGAAGGAACAGTGGAGCTCTCAAACTCAATGCCAAATCTCTACCAAGAAAACATGATGAAGATGTTTTATAAACCACAGGTGATCAACAACAATGGAGCCTTTTTACCTATCATGCAACAAGATTATGCTCCTAAAAGAGTTCCCTTGCAAGATATGAAGTCCACACAGGTTATAGAGAATCCAAAAGTTCACCTTTCAAGCACAGAGAGCATACCTAATAACACCTTTAACATGCATTCATTGTTGAAAAGTGAGCAACCGGAAAAGTTGCTGCCTATCGCCAAAACCAATAATACAAAATTAGAATCTGAGGTGTTACCTGATCATATGTTTGACTTCCCATCTTTTGAAAGCTGCAACAACATCGAAAAAGTGAATACGGCAAACCAACTAACATATTATAATCAAAACCAAAACCAAACTCAAAATCCATTACTCGCTCATACTAGTTCATCGCCAATGCAGCAGCCTCAGTTAGAATCATCAATGTCACATCCTCAAATGATTGACATGCTCCAACCCGATTCTTCTATTGTAAACAGCATGATTCCGCAGATAGACGTAGACGAATGGATGATGTATTCTTCTTGTCAGCCTCAAGTAGTGAATCCCTCGATACCTTCAATGAACCAAGAAGTGTGGGATAATTATGTCAAGAATTTTAACTTGAGGGATCTTTCAGCTGAAAGCAATAACCAAAGTGAAATTTGTGTCAATGTTGATGCTATTAATAGTGTCAGTACCACTATGGTTGATCCTTCTACTTCAAACACCATTTTCGACGACTTTTGCTCAATGAAAGATAAAGATTTTCAGCACCCTCAAGATTGCATGGTTGGCAACTTAAGTTCTAGTCAAGATGGCCAGTCTCAGATTACTTCTGCTAGTCTAGCTGAGTCGCACGCCTTTTCTCTGCGAGACAACTCTGGTGGTACTTCTTCAAGCCATGTTGATTTTGATGAAAGTAGTTTTCTGCAGAATAATAACTCTTGGAAGCAAGTAGCTGCACCAATCCGAACCTACACAAAGGTAACATTATTTCTGTAATGTTGGCATGAATGTTACTTGTTTTTTCCAATTTGTTTCGATCTTGTATATCATGATGGTATTTATTGTGTCTGTGGTCTGTGTGACAGGTGCAAAAAGCAGGTTCTGTAGGAAGATCAATTGATGTGACTACTTTCAAGAACTATGAAGAGTTGATCCGCGCAATTGAATGCATGTTTGGACTGGACGGTCTGCTGAATGACACAAAAGGTTCCGGATGGAAACTAGTATACGTAGATTATGAGAGTGATGTTCTGCTAGTTGGAGATGATCCTTGGGAGTAAGTTTCTCACCCTTCTTTCGTGTAATGTTTGATCTTTGACACTTAAGTTTAATAGTCTTATTTTGGTTACATTTTTTCAGACAAAAAAAAGACCCTTTTTAGATATTAAAACTTTTGGAACAATGTTGTGATCTTGTGTAGGGAATTTGTGGGGTGTGTCCGCTGTATACGAATATTATCACCTTCAGAAGTTAAAGAGATGAGTGAAGAAGGGATGAAGCTTCTGAACAGCGGAGCATTGCAAGGAATCAATGTGTGA
Protein sequence

>MS.gene63996.t1

MASLEEKAKSVGGVVGGQTLVAEMKLLKEMQEHCGVRKTLNSELWHACAGPLVSLPQVGGLVYYFPQGHSEQVAASTRRIATSQIPNYPSLPSQLLCQVQNVTLHADKETDEIYAQMTLQPLNSEKEVFPVSEFGLNKSKHPTEFFCKTLTASDTSTHGGFSVPRRAAEKLFPPLDYTIQPPTQELVVRDLHDNTWTFRHIYRGQPKRHLLTTGWSLFVGSKRLKAGDSVLFIRDEKSQLRVGVRRANRQQTTLPSSVLSADSMHIGVLAAAAHAAANRSPFTIFYNPRACPSDFVIPLAKYRKSVYGTHLSAGMRFGMMFETEESGKRRYMGTIVGISDVDPLRWPGSKWRNIQAEWDEPGCGDKQNRVSVWEIETPESLFIFPSLTSSLKRPLQSGYLENEWGTLIRRPFIKVPENEGTVELSNSMPNLYQENMMKMFYKPQVINNNGAFLPIMQQDYAPKRVPLQDMKSTQVIENPKVHLSSTESIPNNTFNMHSLLKSEQPEKLLPIAKTNNTKLESEVLPDHMFDFPSFESCNNIEKVNTANQLTYYNQNQNQTQNPLLAHTSSSPMQQPQLESSMSHPQMIDMLQPDSSIVNSMIPQIDVDEWMMYSSCQPQVVNPSIPSMNQEVWDNYVKNFNLRDLSAESNNQSEICVNVDAINSVSTTMVDPSTSNTIFDDFCSMKDKDFQHPQDCMVGNLSSSQDGQSQITSASLAESHAFSLRDNSGGTSSSHVDFDESSFLQNNNSWKQVAAPIRTYTKVQKAGSVGRSIDVTTFKNYEELIRAIECMFGLDGLLNDTKGSGWKLVYVDYESDVLLVGDDPWEEFVGCVRCIRILSPSEVKEMSEEGMKLLNSGALQGINV