AlfalfaGEDB | MS.gene64235

M. sativa cultivar XinJiangDaYe / MS.gene64235

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene64235.t1	XP_003596287.1	70.1	127	27	1	1	127	1	116	1.10E-22	116.3

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene64235.t1	G7IR17	70.1	127	27	1	1	127	1	116	7.9e-23	116.3

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene050129	MS.gene64235	0.803617	3.20E-49	-1.69E-46
MS.gene050363	MS.gene64235	0.804533	2.06E-49	-1.69E-46
MS.gene050381	MS.gene64235	0.819454	1.15E-52	-1.69E-46
MS.gene050883	MS.gene64235	0.838956	2.11E-57	-1.69E-46
MS.gene05141	MS.gene64235	0.80881	2.58E-50	-1.69E-46
MS.gene051946	MS.gene64235	0.827698	1.35E-54	-1.69E-46
MS.gene053549	MS.gene64235	0.822109	2.82E-53	-1.69E-46
MS.gene054708	MS.gene64235	0.809269	2.06E-50	-1.69E-46
MS.gene056310	MS.gene64235	0.851803	7.00E-61	-1.69E-46
MS.gene056311	MS.gene64235	0.849851	2.48E-60	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene64235.t1	MTR_2g075540	63.704	135	30	2	1	131	1	120	1.20e-36	122
MS.gene64235.t1	MTR_2g075600	47.682	151	57	2	1	131	1	149	4.70e-32	111
MS.gene64235.t1	MTR_2g075590	57.037	135	37	3	1	131	1	118	5.38e-31	107
MS.gene64235.t1	MTR_2g075550	51.408	142	49	4	1	124	1	140	5.42e-30	105
MS.gene64235.t1	MTR_2g075570	56.557	122	40	3	1	113	1	118	2.04e-23	88.6

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 34 sgRNAs with CRISPR-Local

Find 61 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACAACTAGTACTCAGGTGG+AGG	0.594211	2.1:+24039447	MS.gene64235:CDS
AAGAATCCACCAGGTAGCAC+AGG	0.570025	2.1:+24039397	MS.gene64235:CDS
AATCCACCAGGTAGCACAGG+CGG	0.634430	2.1:+24039400	MS.gene64235:CDS
AATTGATCGAAAGAAACCCC+CGG	0.603280	2.1:+24039270	MS.gene64235:CDS
ACAAACAACTAGTACTCAGG+TGG	0.706249	2.1:+24039444	MS.gene64235:CDS
ACGGAGAATACTCAGCGACG+TGG	0.705185	2.1:+24039331	MS.gene64235:CDS
AGCACAGGAAGCGGAGGATT+GGG	0.335111	2.1:+24039295	MS.gene64235:CDS
AGCACAGGCGGAGGAGGATT+GGG	0.392310	2.1:+24039412	MS.gene64235:CDS
AGTAATCGAAAGAATCCACC+AGG	0.647364	2.1:+24039388	MS.gene64235:CDS
ATTGGGGACTGGTCCGAAAA+CGG	0.529672	2.1:+24039312	MS.gene64235:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAACCACCAAAAAATTCTG+AGG	+	chr2.1:24039360-24039379	MS.gene64235:CDS	30.0%
GTTAATCAAACCATGAATCA+TGG	-	chr2.1:24039032-24039051	None:intergenic	30.0%
AAAAATCACCACCCACTCAT+TGG	-	chr2.1:24039518-24039537	None:intergenic	40.0%
AATTGATCGAAAGAAACCCC+CGG	+	chr2.1:24039270-24039289	MS.gene64235:CDS	40.0%
ACAAACAACTAGTACTCAGG+TGG	+	chr2.1:24039444-24039463	MS.gene64235:CDS	40.0%
ACAATGTCGAACCTACAAAG+AGG	-	chr2.1:24039552-24039571	None:intergenic	40.0%
AGTAATCGAAAGAATCCACC+AGG	+	chr2.1:24039388-24039407	MS.gene64235:CDS	40.0%
CAATCTTACTGCCAATGAGT+GGG	+	chr2.1:24039504-24039523	MS.gene64235:CDS	40.0%
CAATGTCGAACCTACAAAGA+GGG	-	chr2.1:24039551-24039570	None:intergenic	40.0%
TCAATCTTACTGCCAATGAG+TGG	+	chr2.1:24039503-24039522	MS.gene64235:CDS	40.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.1	gene	24038784	24039589	24038784	ID=MS.gene64235
chr2.1	mRNA	24038784	24039589	24038784	ID=MS.gene64235.t1;Parent=MS.gene64235
chr2.1	exon	24038784	24038869	24038784	ID=MS.gene64235.t1.exon1;Parent=MS.gene64235.t1
chr2.1	CDS	24038784	24038869	24038784	ID=cds.MS.gene64235.t1;Parent=MS.gene64235.t1
chr2.1	exon	24039237	24039528	24039237	ID=MS.gene64235.t1.exon2;Parent=MS.gene64235.t1
chr2.1	CDS	24039237	24039528	24039237	ID=cds.MS.gene64235.t1;Parent=MS.gene64235.t1
chr2.1	exon	24039560	24039589	24039560	ID=MS.gene64235.t1.exon3;Parent=MS.gene64235.t1
chr2.1	CDS	24039560	24039589	24039560	ID=cds.MS.gene64235.t1;Parent=MS.gene64235.t1

Gene Sequence

>MS.gene64235

ATGGCTCTTGCTGCAGGTAGCTTCACCCACATACCAGCTCTGCCAACCCCCAACTATGTGCCTAAAAAATCTATGACAATTACTATGTAAGTATATATTTGACATAAATGACAGTTCTCTAATTATATACGTATGCTTAAGGATTCATTTTTTCTAGTAAGCATAGTTTTAATGTTTGCATCGCTATATATGCATCAATTTTTCTTAATTTATGTATAAAAAAAAATTCAATAATTTTAAATTAGCCATGATTCATGGTTTGATTAACTTCGTAAATCAATCCCTGAACAAGTTAAAAATTTATTTAGCAACGAATTTAAGAAACTAATTTGAGACCTATAGATTTTATAAATCAGTATAGGGAATTTTTTGTATGGTAGAAACTTATAATAAACTATCATTGGACAATATACATGAATCATGAATGTAACTATATTTGTTGTTTCTCTTCAGAAAATGTGCCAACAACAAGAAAAACAAAACAAAAATTGATCGAAAGAAACCCCCGGGTAGCACAGGAAGCGGAGGATTGGGGACTGGTCCGAAAACGGAGAATACTCAGCGACGTGGAGGAAAAAAACCACCAAAAAATTCTGAGGCACCAAGTAATCGAAAGAATCCACCAGGTAGCACAGGCGGAGGAGGATTGGGAACTGGTGCACAAACAACTAGTACTCAGGTGGAGGATGATGAAGATCAACTTGACAACACTTTTGCATTCAATCTTACTGCCAATGAGTGGGTGGTGATTTTTCTTTTTTTGACCCTCTTTGTAGGTTCGACATTGTTTAAAGCACATTAATTAG

Protein sequence

>MS.gene64235.t1

MALAAGSFTHIPALPTPNYVPKKSMTITIKCANNKKNKTKIDRKKPPGSTGSGGLGTGPKTENTQRRGGKKPPKNSEAPSNRKNPPGSTGGGGLGTGAQTTSTQVEDDEDQLDNTFAFNLTANEWVVRHCLKHIN