AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene050129


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene050129.t1 MTR_4g058760 98.504 936 14 0 1 936 1 936 0.0 1927
MS.gene050129.t1 MTR_8g023050 27.795 331 189 10 592 888 52 366 1.83e-29 125
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene050129.t1 AT5G60700 80.831 939 170 4 1 936 1 932 0.0 1580
MS.gene050129.t1 AT5G60700 86.677 668 89 0 269 936 1 668 0.0 1222
MS.gene050129.t1 AT5G12260 31.203 266 148 10 605 846 73 327 1.78e-27 119

Find 161 sgRNAs with CRISPR-Local

Find 271 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTGCTTGGTTTGGAAAATT+TGG 0.065005 4.1:+39500184 None:intergenic
CCCCATGTTTCTTTGTCTTT+TGG 0.116342 4.1:+39501972 None:intergenic
TTGGGTGTTGGTTCAATTTC+CGG 0.172581 4.1:-39501612 MS.gene050129:CDS
CAACCATTTGTTCTTGATTT+CGG 0.225293 4.1:+39500271 None:intergenic
TTGACAACTTCAACAATTCT+TGG 0.227499 4.1:+39500472 None:intergenic
TAAAACTCTCTCCAATGTTT+AGG 0.235717 4.1:+39500349 None:intergenic
CAATCAGGCTGTTTCTCTTA+AGG 0.258718 4.1:-39499993 MS.gene050129:CDS
CTTCTGTGTCTAAAGTTCTT+TGG 0.263805 4.1:-39501407 MS.gene050129:CDS
ATTGGTTATTGTTATCTTCT+TGG 0.265866 4.1:+39503986 None:intergenic
AGGGAGATGGAAGAGAGTTC+TGG 0.270847 4.1:+39500502 None:intergenic
TTAGTGAATTTACCCTGTTT+TGG 0.274450 4.1:+39500839 None:intergenic
TGTGGTTAAGCATAATAAAA+TGG 0.289497 4.1:-39500110 MS.gene050129:CDS
AAAGTATAAGAATTCTGTTT+TGG 0.290647 4.1:-39503431 MS.gene050129:CDS
AAGTTTGGGTGCTTTCTTTC+GGG 0.297498 4.1:-39503660 MS.gene050129:CDS
CAAGTTTGGGTGCTTTCTTT+CGG 0.298260 4.1:-39503661 MS.gene050129:CDS
TGGGTGTTGGTTCAATTTCC+GGG 0.301874 4.1:-39501611 MS.gene050129:CDS
GAATACACTGCTTGTATAAC+TGG 0.310239 4.1:+39501570 None:intergenic
AATCAGGCTGTTTCTCTTAA+GGG 0.311927 4.1:-39499992 MS.gene050129:CDS
AGCTCTCAAATGGCCTCTTT+TGG 0.312366 4.1:-39501667 MS.gene050129:CDS
CAACAATTCTTGGTGTGTAT+AGG 0.312888 4.1:+39500482 None:intergenic
TCACCAGTTGAGAAGGTAAA+AGG 0.315759 4.1:+39503208 None:intergenic
AACAATTCTTGGTGTGTATA+GGG 0.318766 4.1:+39500483 None:intergenic
CTCTTGAGGGACGCCTCGTT+TGG 0.323081 4.1:+39503634 None:intergenic
GAATTGATGTGGCTTGAAAT+TGG 0.323347 4.1:+39503968 None:intergenic
TTTGCAGACAGAAGCTGATT+TGG 0.331055 4.1:-39503527 MS.gene050129:CDS
AAAACTCTCTCCAATGTTTA+GGG 0.348787 4.1:+39500350 None:intergenic
AAAGAAAATGTTGGAGATCT+TGG 0.355194 4.1:-39503473 MS.gene050129:CDS
CTTGATTTCGGAATTTGAAC+CGG 0.360455 4.1:+39500283 None:intergenic
TTCATCAATTACCTTGTAGT+TGG 0.366831 4.1:-39500387 MS.gene050129:CDS
TCATCAATTACCTTGTAGTT+GGG 0.371809 4.1:-39500386 MS.gene050129:CDS
GGGAGATGGAAGAGAGTTCT+GGG 0.371894 4.1:+39500503 None:intergenic
AATTCTGTCGCATTCCATTT+CGG 0.373554 4.1:+39500442 None:intergenic
GACTTAAATTTCCTATAACT+TGG 0.376357 4.1:+39503361 None:intergenic
TTGATCCATAGGTAGTAATA+AGG 0.377040 4.1:+39500568 None:intergenic
TGAGAGAAGATGCAGCTTCT+TGG 0.384331 4.1:+39504010 None:intergenic
CAAATGGTTGGCAAGCTTCA+TGG 0.386635 4.1:-39500258 MS.gene050129:CDS
AAGATCTTTGATTTGGGTGT+TGG 0.387293 4.1:-39501624 MS.gene050129:CDS
CTATCCATGTTGAAAGTGAT+TGG 0.388496 4.1:+39500766 None:intergenic
TGTGCAATTCTTGAGAAATC+TGG 0.389282 4.1:+39504078 None:intergenic
TCAACATCATAACCCAAAAC+AGG 0.393205 4.1:-39500852 MS.gene050129:CDS
AACTAGTAGGTTCATTTGAA+TGG 0.394328 4.1:-39500720 MS.gene050129:CDS
TGGACCTTTCAAATCCCATT+TGG 0.397443 4.1:+39503786 None:intergenic
TACTGTTGTTTCTGATACAT+AGG 0.399588 4.1:+39501929 None:intergenic
GCTGAAGGCATCTTCATTCC+AGG 0.403202 4.1:+39500043 None:intergenic
GAGATCTTGGCACATGTAGC+TGG 0.404092 4.1:-39503460 MS.gene050129:CDS
GCTTTCCACGATTCTCTTGA+GGG 0.406469 4.1:+39503621 None:intergenic
AATATTGCCATTTAGACAAA+AGG 0.408476 4.1:-39503395 MS.gene050129:CDS
CCATCTTCAGATGACAACTT+TGG 0.415502 4.1:-39500622 MS.gene050129:CDS
AATTCTTGAGAAATCTGGTT+TGG 0.422536 4.1:+39504083 None:intergenic
TAAAGCTGCTGGTGCTAAGT+TGG 0.428332 4.1:-39499966 MS.gene050129:CDS
TCATGTTCATTAGCTCTTGA+AGG 0.429882 4.1:+39503812 None:intergenic
AGCAGTGTATTCTAGTTTGA+AGG 0.435732 4.1:-39501559 MS.gene050129:CDS
CGTTCTTTGCAAACCAAAAG+AGG 0.435989 4.1:+39501654 None:intergenic
TAATGAACATGAAATCCAAA+TGG 0.437665 4.1:-39503801 MS.gene050129:CDS
AAAGCATACATTGTTGTCTC+TGG 0.442855 4.1:-39501723 MS.gene050129:CDS
GGCGAGAAGTGGAGATTCCT+TGG 0.445610 4.1:-39504265 MS.gene050129:CDS
TCTCACCTTATTACTACCTA+TGG 0.445983 4.1:-39500573 MS.gene050129:CDS
AATTTCATCTCCTAGATAGT+AGG 0.446568 4.1:+39500789 None:intergenic
CTCACCAATGCCTACTATCT+AGG 0.449528 4.1:-39500799 MS.gene050129:CDS
TTGAAGGGTCTCACTTCCAA+TGG 0.454059 4.1:+39503828 None:intergenic
ATTGATATGATGTATTTAAG+AGG 0.454107 4.1:-39500223 MS.gene050129:CDS
AGCACCCAAACTTGATGAAA+AGG 0.455138 4.1:+39503670 None:intergenic
GAGAGACTTGAGGGTCATAA+TGG 0.457607 4.1:+39500527 None:intergenic
TTGGTTCTTAAATCAATTGA+AGG 0.462460 4.1:+39504102 None:intergenic
CACTATTGATAAAATTGTGC+AGG 0.462476 4.1:-39503296 MS.gene050129:CDS
ATTCCGAAATCAAGAACAAA+TGG 0.465756 4.1:-39500274 MS.gene050129:CDS
AAGCTGCAGCAGCTCTCAAA+TGG 0.469839 4.1:-39501677 MS.gene050129:CDS
GTTGCTGTTGATCATCATAC+TGG 0.470551 4.1:-39499905 MS.gene050129:CDS
AAATTTAAGTCTAAAGAAGC+TGG 0.471279 4.1:-39503349 MS.gene050129:CDS
ATGATCACACCACACATTGT+AGG 0.472550 4.1:-39504039 MS.gene050129:CDS
AAAGAGAGAGCTTTATGAAG+AGG 0.472811 4.1:-39503872 MS.gene050129:CDS
AAAGCTGCTGGTGCTAAGTT+GGG 0.474235 4.1:-39499965 MS.gene050129:CDS
ATGTTGAATGACTATGTTGC+TGG 0.474502 4.1:-39504237 MS.gene050129:CDS
TGGTGGAAAGCACTTTCATC+TGG 0.474973 4.1:-39501870 MS.gene050129:CDS
GTACTATGGAAGGTTTCAAA+TGG 0.475657 4.1:-39503551 MS.gene050129:CDS
CTTCAAAAGTATAGAAATGC+AGG 0.477205 4.1:-39502017 MS.gene050129:CDS
GAGAAACAGCCTGATTGAAA+AGG 0.480437 4.1:+39499999 None:intergenic
TTGTCAAAGAAAGACCGAAA+TGG 0.487112 4.1:-39500456 MS.gene050129:CDS
TGTGAGAAAAGCTTTGAAGA+TGG 0.488545 4.1:-39501478 MS.gene050129:CDS
TGATCACACCACACATTGTA+GGG 0.488995 4.1:-39504038 MS.gene050129:CDS
CTTAAGGGACTTAAAGCTGC+TGG 0.489733 4.1:-39499977 MS.gene050129:CDS
GTGATATCATAAGCAGGATC+AGG 0.492253 4.1:+39503316 None:intergenic
GAAGCAACCATAAAACTAGT+AGG 0.492724 4.1:-39500733 MS.gene050129:CDS
GCTTCAGAAACTAATTCAAA+TGG 0.494305 4.1:-39501456 MS.gene050129:CDS
AATTTCCAAAACAAAACCAT+TGG 0.494665 4.1:-39503844 MS.gene050129:CDS
CAAGGTAATTGATGAAGGTA+AGG 0.495150 4.1:+39500394 None:intergenic
GTTCTGGGAGAGAGACTTGA+GGG 0.497749 4.1:+39500518 None:intergenic
TCCACAGTAATAACAACACT+TGG 0.500700 4.1:+39501516 None:intergenic
CATGTTCATTAGCTCTTGAA+GGG 0.501563 4.1:+39503813 None:intergenic
TGAGTGCATATTTGATCCAT+AGG 0.502316 4.1:+39500557 None:intergenic
AATGAACATGAAATCCAAAT+GGG 0.502594 4.1:-39503800 MS.gene050129:CDS
CTGGTGAAGATTTGCACCTC+AGG 0.503101 4.1:-39503192 MS.gene050129:intron
TGATGAAGGTAAGGTGTGTT+CGG 0.505188 4.1:+39500403 None:intergenic
ATCTGGCTACATAACACAAT+GGG 0.506007 4.1:-39501853 MS.gene050129:CDS
CGAAATACGACGGCGAGAAG+TGG 0.507540 4.1:-39504276 MS.gene050129:CDS
TGTGTCTAAAGTTCTTTGGA+TGG 0.510078 4.1:-39501403 MS.gene050129:CDS
CCAAAGTTGTCATCTGAAGA+TGG 0.511797 4.1:+39500622 None:intergenic
GCATACATTGTTGTCTCTGG+TGG 0.511913 4.1:-39501720 MS.gene050129:CDS
CATCAATTACCTTGTAGTTG+GGG 0.519801 4.1:-39500385 MS.gene050129:CDS
TCATTCTCACAAACAAGAGA+TGG 0.521795 4.1:+39503946 None:intergenic
TTCAAGTTCGTGATGATCAA+TGG 0.523870 4.1:-39501890 MS.gene050129:CDS
TGCTGGTGCTAAGTTGGGAC+AGG 0.530192 4.1:-39499960 MS.gene050129:CDS
GAAGGTAAGGTGTGTTCGGA+TGG 0.531888 4.1:+39500407 None:intergenic
AACTACAAGGTAATTGATGA+AGG 0.532933 4.1:+39500389 None:intergenic
ATCTCCTAGATAGTAGGCAT+TGG 0.534319 4.1:+39500795 None:intergenic
CTAAAATCATCCTTCAACAA+TGG 0.535382 4.1:+39500076 None:intergenic
AGCTTTCCACGATTCTCTTG+AGG 0.537297 4.1:+39503620 None:intergenic
GCAGTGTATTCTAGTTTGAA+GGG 0.542949 4.1:-39501558 MS.gene050129:CDS
TTGATTTCGGAATTTGAACC+GGG 0.544807 4.1:+39500284 None:intergenic
TATGTGCACCTGGTTCCATA+TGG 0.547518 4.1:+39500149 None:intergenic
GCTGCTGCAGCTTGTTCACA+AGG 0.548041 4.1:+39501687 None:intergenic
TGGAAAGCTATAACGATTCA+CGG 0.548641 4.1:-39503606 MS.gene050129:CDS
CAAATCTTCACCAGTTGAGA+AGG 0.549226 4.1:+39503201 None:intergenic
GATGGTAATCTTGAAGCTGA+AGG 0.550276 4.1:+39500028 None:intergenic
TCTCAAGAATTGCACAACAA+TGG 0.551342 4.1:-39504071 MS.gene050129:CDS
TCTTGGTGTGTATAGGGAGA+TGG 0.554912 4.1:+39500489 None:intergenic
TTGCAGATTGGAATAAAATG+AGG 0.555574 4.1:-39500882 MS.gene050129:intron
TCAATAGTGATATCATAAGC+AGG 0.556245 4.1:+39503310 None:intergenic
GTCATTCAACATTCCATCCA+AGG 0.556417 4.1:+39504248 None:intergenic
AACACTGCTCCCCAACTACA+AGG 0.561032 4.1:+39500376 None:intergenic
TTGATATGATGTATTTAAGA+GGG 0.562184 4.1:-39500222 MS.gene050129:CDS
TCCAAAAGACAAAGAAACAT+GGG 0.566745 4.1:-39501973 MS.gene050129:CDS
AGAAGTGGAGATTCCTTGGA+TGG 0.567533 4.1:-39504261 MS.gene050129:CDS
GATACCTGGAAAGAAAATGT+TGG 0.567656 4.1:-39503482 MS.gene050129:CDS
TAATTCAAATGGTACTACAT+TGG 0.567955 4.1:-39501445 MS.gene050129:CDS
TAAGAGCAGTGAGTGAAAGT+TGG 0.570309 4.1:-39500648 MS.gene050129:CDS
CGAAATCAAGAACAAATGGT+TGG 0.570974 4.1:-39500270 MS.gene050129:CDS
CTGCTCTTATGAGTCCACCT+TGG 0.573990 4.1:+39500662 None:intergenic
AAATCCAAATGGGATTTGAA+AGG 0.575214 4.1:-39503790 MS.gene050129:CDS
GTTGATGATGATATGATACC+TGG 0.577017 4.1:-39503496 MS.gene050129:CDS
AGATCTTGGCACATGTAGCT+GGG 0.577338 4.1:-39503459 MS.gene050129:CDS
CCAAACTTGATGAAAAGGTA+GGG 0.586043 4.1:+39503675 None:intergenic
TTCTTTCGGGAGTCCAAACG+AGG 0.586582 4.1:-39503647 MS.gene050129:CDS
TCAACTAACCATATGGAACC+AGG 0.589500 4.1:-39500157 MS.gene050129:CDS
CAATGTGTGGTGTGATCATG+AGG 0.593166 4.1:+39504043 None:intergenic
TTTATGTTTACATGAACATG+AGG 0.594622 4.1:-39500330 MS.gene050129:CDS
CCCAAACTTGATGAAAAGGT+AGG 0.596316 4.1:+39503674 None:intergenic
AATTCCAATCACTTTCAACA+TGG 0.597469 4.1:-39500770 MS.gene050129:CDS
AGTTCTGGGAGAGAGACTTG+AGG 0.603063 4.1:+39500517 None:intergenic
ATCCAAAAGACAAAGAAACA+TGG 0.611454 4.1:-39501974 MS.gene050129:CDS
CAGAATCTTGAGCAGTGATG+AGG 0.612938 4.1:+39499878 None:intergenic
GGGTGTTGGTTCAATTTCCG+GGG 0.614538 4.1:-39501610 MS.gene050129:CDS
AACAAGAGATGGAATTGATG+TGG 0.615514 4.1:+39503957 None:intergenic
TTAGCACTAATATGTGCACC+TGG 0.615984 4.1:+39500139 None:intergenic
TGATTGAAAAGGTTCAAAGA+TGG 0.616471 4.1:+39500010 None:intergenic
TGCCTCAGAGTTCGACACCC+CGG 0.617245 4.1:+39501593 None:intergenic
GGTTCATTTGAATGGCCACA+TGG 0.621803 4.1:-39500712 MS.gene050129:CDS
TATTAGTGCTAAAGATAATG+TGG 0.629617 4.1:-39500128 MS.gene050129:CDS
TGGTAATGCCCTACAATGTG+TGG 0.631361 4.1:+39504030 None:intergenic
CATCTGGCTACATAACACAA+TGG 0.632893 4.1:-39501854 MS.gene050129:CDS
CAACATCATAACCCAAAACA+GGG 0.633195 4.1:-39500851 MS.gene050129:CDS
AAGTTCGTGATGATCAATGG+TGG 0.634592 4.1:-39501887 MS.gene050129:CDS
ACTTTAGACACAGAAGCCCT+AGG 0.635342 4.1:+39501414 None:intergenic
CCCAAGTGTTGTTATTACTG+TGG 0.644602 4.1:-39501517 MS.gene050129:CDS
CTAAGAAGAAGAATCATCCA+AGG 0.647301 4.1:-39500679 MS.gene050129:CDS
ACAGGGTAAATTCACTAACA+AGG 0.650361 4.1:-39500834 MS.gene050129:CDS
GGCGTCCCTCAAGAGAATCG+TGG 0.659434 4.1:-39503626 MS.gene050129:CDS
CCACAGTAATAACAACACTT+GGG 0.662921 4.1:+39501517 None:intergenic
AGAAGAAGAATCATCCAAGG+TGG 0.677908 4.1:-39500676 MS.gene050129:CDS
TTCCGGGGTGTCGAACTCTG+AGG 0.689190 4.1:-39501595 MS.gene050129:CDS
CCAAAAGACAAAGAAACATG+GGG 0.703653 4.1:-39501972 MS.gene050129:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTTAAAAAAAAAAAAAT+TGG - chr4.1:39501067-39501086 MS.gene050129:intron 0.0%
!! ATAATAAAATAAAATTATGG+GGG + chr4.1:39501132-39501151 None:intergenic 10.0%
!! GGTATAATAAAATAAAATTA+TGG + chr4.1:39501135-39501154 None:intergenic 10.0%
!! TAAAATAAAGAAAAATGTTA+AGG + chr4.1:39501570-39501589 None:intergenic 10.0%
!!! ATTTTAATATAGAAAATCTT+TGG - chr4.1:39501584-39501603 MS.gene050129:CDS 10.0%
!! CTAGATTAGATTATTAATAA+TGG - chr4.1:39502856-39502875 MS.gene050129:intron 15.0%
!! TATCATAATAAACTTTGAAT+AGG - chr4.1:39503130-39503149 MS.gene050129:intron 15.0%
!! TCATAAAATAAAATTGCATA+TGG + chr4.1:39501156-39501175 None:intergenic 15.0%
!!! TACATAAATGACATTTTTTT+TGG + chr4.1:39501206-39501225 None:intergenic 15.0%
!!! TTTATTCAATTTTCATATGA+AGG - chr4.1:39501839-39501858 MS.gene050129:CDS 15.0%
!! AAAAAATAGACTTTCTTACT+TGG + chr4.1:39502811-39502830 None:intergenic 20.0%
!! ACACATGTAAAAATTATTAC+TGG + chr4.1:39502031-39502050 None:intergenic 20.0%
!! AGGTTAAACTTTACTAAATA+TGG + chr4.1:39503208-39503227 None:intergenic 20.0%
!! ATTGATATGATGTATTTAAG+AGG - chr4.1:39503942-39503961 MS.gene050129:CDS 20.0%
!! TATTTAGTAAAGTTTAACCT+AGG - chr4.1:39503208-39503227 MS.gene050129:CDS 20.0%
!! TTAAACTAGTATGTTTGTAT+CGG + chr4.1:39501519-39501538 None:intergenic 20.0%
!! TTGATATGATGTATTTAAGA+GGG - chr4.1:39503943-39503962 MS.gene050129:CDS 20.0%
!! TTTCACTAAATTAAAGTAAG+TGG + chr4.1:39501617-39501636 None:intergenic 20.0%
!!! AAAGTATAAGAATTCTGTTT+TGG - chr4.1:39500734-39500753 MS.gene050129:CDS 20.0%
!!! AACATTTTTATTGTACTACA+TGG - chr4.1:39500038-39500057 MS.gene050129:CDS 20.0%
!!! AAGTATAAGAATTCTGTTTT+GGG - chr4.1:39500735-39500754 MS.gene050129:CDS 20.0%
!!! ACATTTTTATTGTACTACAT+GGG - chr4.1:39500039-39500058 MS.gene050129:CDS 20.0%
!!! ATTTTACTTTTCCAAGTTAT+AGG - chr4.1:39500793-39500812 MS.gene050129:CDS 20.0%
!!! CCATTAGATTATGTTTTAAT+CGG + chr4.1:39503063-39503082 None:intergenic 20.0%
!!! GTAATAATTTTTACATGTGT+TGG - chr4.1:39502031-39502050 MS.gene050129:intron 20.0%
!!! TAATAGTTTGAAATTGTTTG+CGG + chr4.1:39501961-39501980 None:intergenic 20.0%
!!! TTCAACAAAACATTGATTTT+CGG + chr4.1:39500417-39500436 None:intergenic 20.0%
!!! TTTTAAATACCAGTTAAATC+AGG - chr4.1:39502891-39502910 MS.gene050129:intron 20.0%
! AAATAAGTCATTGTTTGACT+TGG + chr4.1:39501682-39501701 None:intergenic 25.0%
! AAATTTAAGTCTAAAGAAGC+TGG - chr4.1:39500816-39500835 MS.gene050129:CDS 25.0%
! AAGTCAAACAATGACTTATT+TGG - chr4.1:39501681-39501700 MS.gene050129:CDS 25.0%
! AATGAACATGAAATCCAAAT+GGG - chr4.1:39500365-39500384 MS.gene050129:CDS 25.0%
! AATTTCCAAAACAAAACCAT+TGG - chr4.1:39500321-39500340 MS.gene050129:CDS 25.0%
! ATAGACAATATTACACATGT+TGG + chr4.1:39501407-39501426 None:intergenic 25.0%
! ATTGGTTATTGTTATCTTCT+TGG + chr4.1:39500182-39500201 None:intergenic 25.0%
! CCGATTAAAACATAATCTAA+TGG - chr4.1:39503060-39503079 MS.gene050129:intron 25.0%
! GAAAAATTTAGATCAACAGT+TGG - chr4.1:39502415-39502434 MS.gene050129:intron 25.0%
! GACTTAAATTTCCTATAACT+TGG + chr4.1:39500807-39500826 None:intergenic 25.0%
! TAATGAACATGAAATCCAAA+TGG - chr4.1:39500364-39500383 MS.gene050129:CDS 25.0%
! TAATTCAAATGGTACTACAT+TGG - chr4.1:39502720-39502739 MS.gene050129:intron 25.0%
! TATTAGTGCTAAAGATAATG+TGG - chr4.1:39504037-39504056 MS.gene050129:CDS 25.0%
! TGTGGTTAAGCATAATAAAA+TGG - chr4.1:39504055-39504074 MS.gene050129:CDS 25.0%
! TTTATGTTTACATGAACATG+AGG - chr4.1:39503835-39503854 MS.gene050129:CDS 25.0%
!! AATATTGCCATTTAGACAAA+AGG - chr4.1:39500770-39500789 MS.gene050129:CDS 25.0%
!! GTAAAATCCTTTTGTCTAAA+TGG + chr4.1:39500780-39500799 None:intergenic 25.0%
!! TTGGTTCTTAAATCAATTGA+AGG + chr4.1:39500066-39500085 None:intergenic 25.0%
!!! AAAGTGTTTTTCTCTTGAAA+TGG + chr4.1:39500440-39500459 None:intergenic 25.0%
!!! AAATGAACCTACTAGTTTTA+TGG + chr4.1:39503442-39503461 None:intergenic 25.0%
!!! AAGTTTTTCAACTAACCATA+TGG - chr4.1:39504001-39504020 MS.gene050129:CDS 25.0%
!!! AGTTACGATTTTAAGTACTA+TGG - chr4.1:39500600-39500619 MS.gene050129:CDS 25.0%
!!! CGTTTTAAGATCTTTGATTT+GGG - chr4.1:39502535-39502554 MS.gene050129:intron 25.0%
!!! GATCTAAATTTTTCAAGAAG+TGG + chr4.1:39502409-39502428 None:intergenic 25.0%
!!! GCATAATAAAATGGATTTTG+AGG - chr4.1:39504064-39504083 MS.gene050129:CDS 25.0%
!!! TCGTTTTAAGATCTTTGATT+TGG - chr4.1:39502534-39502553 MS.gene050129:intron 25.0%
!!! TTGATTTTCTTTCAAGTTCT+TGG - chr4.1:39500892-39500911 MS.gene050129:intron 25.0%
AAAACTCTCTCCAATGTTTA+GGG + chr4.1:39503818-39503837 None:intergenic 30.0%
AAAGAAAATGTTGGAGATCT+TGG - chr4.1:39500692-39500711 MS.gene050129:CDS 30.0%
AAATCCAAATGGGATTTGAA+AGG - chr4.1:39500375-39500394 MS.gene050129:CDS 30.0%
AACTACAAGGTAATTGATGA+AGG + chr4.1:39503779-39503798 None:intergenic 30.0%
AACTAGTAGGTTCATTTGAA+TGG - chr4.1:39503445-39503464 MS.gene050129:CDS 30.0%
AATTCCAATCACTTTCAACA+TGG - chr4.1:39503395-39503414 MS.gene050129:CDS 30.0%
AATTCTTGAGAAATCTGGTT+TGG + chr4.1:39500085-39500104 None:intergenic 30.0%
AATTTCATCTCCTAGATAGT+AGG + chr4.1:39503379-39503398 None:intergenic 30.0%
ATCCAAAAGACAAAGAAACA+TGG - chr4.1:39502191-39502210 MS.gene050129:intron 30.0%
ATTCCGAAATCAAGAACAAA+TGG - chr4.1:39503891-39503910 MS.gene050129:CDS 30.0%
CAACCATTTGTTCTTGATTT+CGG + chr4.1:39503897-39503916 None:intergenic 30.0%
CACTATTGATAAAATTGTGC+AGG - chr4.1:39500869-39500888 MS.gene050129:CDS 30.0%
CTAAAATCATCCTTCAACAA+TGG + chr4.1:39504092-39504111 None:intergenic 30.0%
GATCAAACCAATTGACAAAT+TGG + chr4.1:39502923-39502942 None:intergenic 30.0%
GCTTCAGAAACTAATTCAAA+TGG - chr4.1:39502709-39502728 MS.gene050129:intron 30.0%
GTTTGTTTGATTGCAAATAG+AGG + chr4.1:39501882-39501901 None:intergenic 30.0%
TAAAACTCTCTCCAATGTTT+AGG + chr4.1:39503819-39503838 None:intergenic 30.0%
TCAATAGTGATATCATAAGC+AGG + chr4.1:39500858-39500877 None:intergenic 30.0%
TCATCAATTACCTTGTAGTT+GGG - chr4.1:39503779-39503798 MS.gene050129:CDS 30.0%
TCCAAAAGACAAAGAAACAT+GGG - chr4.1:39502192-39502211 MS.gene050129:intron 30.0%
TGATTGAAAAGGTTCAAAGA+TGG + chr4.1:39504158-39504177 None:intergenic 30.0%
TGTTAGAGATCTTAGTGATA+TGG + chr4.1:39503178-39503197 None:intergenic 30.0%
TTAGTGATATGGTCAAGATA+GGG + chr4.1:39503167-39503186 None:intergenic 30.0%
TTCATCAATTACCTTGTAGT+TGG - chr4.1:39503778-39503797 MS.gene050129:CDS 30.0%
TTGACAACTTCAACAATTCT+TGG + chr4.1:39503696-39503715 None:intergenic 30.0%
TTGATCCATAGGTAGTAATA+AGG + chr4.1:39503600-39503619 None:intergenic 30.0%
TTGCAGATTGGAATAAAATG+AGG - chr4.1:39503283-39503302 MS.gene050129:CDS 30.0%
! AACAATTCTTGGTGTGTATA+GGG + chr4.1:39503685-39503704 None:intergenic 30.0%
! ATCTTTGAACCTTTTCAATC+AGG - chr4.1:39504157-39504176 MS.gene050129:CDS 30.0%
! CATTGTTGAAGGATGATTTT+AGG - chr4.1:39504090-39504109 MS.gene050129:CDS 30.0%
! CTTCAAAAGTATAGAAATGC+AGG - chr4.1:39502148-39502167 MS.gene050129:intron 30.0%
! TACAATTTTCTCTTGCAGAT+TGG - chr4.1:39503271-39503290 MS.gene050129:CDS 30.0%
! TAGTGAATTTACCCTGTTTT+GGG + chr4.1:39503328-39503347 None:intergenic 30.0%
! TTAGTGAATTTACCCTGTTT+TGG + chr4.1:39503329-39503348 None:intergenic 30.0%
!! ACGATTTTAAGTACTATGGA+AGG - chr4.1:39500604-39500623 MS.gene050129:CDS 30.0%
!! ATTTTCGGTTTGTTTGGATT+TGG + chr4.1:39500402-39500421 None:intergenic 30.0%
!! CTTTGGAATTCTGATTTCAA+AGG + chr4.1:39501764-39501783 None:intergenic 30.0%
!! GATTTTAGGAATTTTTTGCC+TGG - chr4.1:39504104-39504123 MS.gene050129:CDS 30.0%
!! TACTGTTGTTTCTGATACAT+AGG + chr4.1:39502239-39502258 None:intergenic 30.0%
!!! AAGAGTGCATCAATTTTTTG+TGG + chr4.1:39502349-39502368 None:intergenic 30.0%
!!! AATTCTGTTTTGGGAAGTAT+TGG - chr4.1:39500744-39500763 MS.gene050129:CDS 30.0%
!!! ACATTGATTTTCGGTTTGTT+TGG + chr4.1:39500408-39500427 None:intergenic 30.0%
!!! AGAGTGCATCAATTTTTTGT+GGG + chr4.1:39502348-39502367 None:intergenic 30.0%
!!! ATTCTGTTTTGGGAAGTATT+GGG - chr4.1:39500745-39500764 MS.gene050129:CDS 30.0%
AAAACCAAGCCTCAAAAATC+AGG - chr4.1:39499958-39499977 MS.gene050129:CDS 35.0%
AAAGCATACATTGTTGTCTC+TGG - chr4.1:39502442-39502461 MS.gene050129:intron 35.0%
AACAAGAGATGGAATTGATG+TGG + chr4.1:39500211-39500230 None:intergenic 35.0%
AACTATTGTGCATTACTCCT+AGG + chr4.1:39503228-39503247 None:intergenic 35.0%
AATTCTGTCGCATTCCATTT+CGG + chr4.1:39503726-39503745 None:intergenic 35.0%
ACAGGGTAAATTCACTAACA+AGG - chr4.1:39503331-39503350 MS.gene050129:CDS 35.0%
AGACAATATGATTGTACCTG+AGG + chr4.1:39500992-39501011 None:intergenic 35.0%
ATCTGGCTACATAACACAAT+GGG - chr4.1:39502312-39502331 MS.gene050129:intron 35.0%
ATGTTGAATGACTATGTTGC+TGG - chr4.1:39499928-39499947 MS.gene050129:CDS 35.0%
CAACATCATAACCCAAAACA+GGG - chr4.1:39503314-39503333 MS.gene050129:CDS 35.0%
CAAGGTAATTGATGAAGGTA+AGG + chr4.1:39503774-39503793 None:intergenic 35.0%
CATCAATTACCTTGTAGTTG+GGG - chr4.1:39503780-39503799 MS.gene050129:CDS 35.0%
CCAAAAGACAAAGAAACATG+GGG - chr4.1:39502193-39502212 MS.gene050129:intron 35.0%
CCAAACTTGATGAAAAGGTA+GGG + chr4.1:39500493-39500512 None:intergenic 35.0%
CCACAGTAATAACAACACTT+GGG + chr4.1:39502651-39502670 None:intergenic 35.0%
CGAAATCAAGAACAAATGGT+TGG - chr4.1:39503895-39503914 MS.gene050129:CDS 35.0%
CGGTTTAATCTGTTTAACCA+TGG + chr4.1:39503043-39503062 None:intergenic 35.0%
CTAAGAAGAAGAATCATCCA+AGG - chr4.1:39503486-39503505 MS.gene050129:CDS 35.0%
CTATCCATGTTGAAAGTGAT+TGG + chr4.1:39503402-39503421 None:intergenic 35.0%
CTTAGTGATATGGTCAAGAT+AGG + chr4.1:39503168-39503187 None:intergenic 35.0%
CTTGATTTCGGAATTTGAAC+CGG + chr4.1:39503885-39503904 None:intergenic 35.0%
GAACAAGCCAATTTGTCAAT+TGG - chr4.1:39502913-39502932 MS.gene050129:intron 35.0%
GAAGCAACCATAAAACTAGT+AGG - chr4.1:39503432-39503451 MS.gene050129:CDS 35.0%
GAATACACTGCTTGTATAAC+TGG + chr4.1:39502598-39502617 None:intergenic 35.0%
GAATTGATGTGGCTTGAAAT+TGG + chr4.1:39500200-39500219 None:intergenic 35.0%
GACACTAGAGAAAAAGTCTT+TGG + chr4.1:39501781-39501800 None:intergenic 35.0%
GATACCTGGAAAGAAAATGT+TGG - chr4.1:39500683-39500702 MS.gene050129:CDS 35.0%
GTACTATGGAAGGTTTCAAA+TGG - chr4.1:39500614-39500633 MS.gene050129:CDS 35.0%
TAGTGATATGGTCAAGATAG+GGG + chr4.1:39503166-39503185 None:intergenic 35.0%
TCAACATCATAACCCAAAAC+AGG - chr4.1:39503313-39503332 MS.gene050129:CDS 35.0%
TCATTCTCACAAACAAGAGA+TGG + chr4.1:39500222-39500241 None:intergenic 35.0%
TCCACAGTAATAACAACACT+TGG + chr4.1:39502652-39502671 None:intergenic 35.0%
TCTCAAGAATTGCACAACAA+TGG - chr4.1:39500094-39500113 MS.gene050129:CDS 35.0%
TCTCACCTTATTACTACCTA+TGG - chr4.1:39503592-39503611 MS.gene050129:CDS 35.0%
TGAGTGCATATTTGATCCAT+AGG + chr4.1:39503611-39503630 None:intergenic 35.0%
TGGAAAGCTATAACGATTCA+CGG - chr4.1:39500559-39500578 MS.gene050129:CDS 35.0%
TGTGCAATTCTTGAGAAATC+TGG + chr4.1:39500090-39500109 None:intergenic 35.0%
TTGATTTCGGAATTTGAACC+GGG + chr4.1:39503884-39503903 None:intergenic 35.0%
TTGTCAAAGAAAGACCGAAA+TGG - chr4.1:39503709-39503728 MS.gene050129:CDS 35.0%
! AAAGAGAGAGCTTTATGAAG+AGG - chr4.1:39500293-39500312 MS.gene050129:CDS 35.0%
! ACAAGTGTTTCTGAACCTAA+TGG + chr4.1:39501724-39501743 None:intergenic 35.0%
! ATCTCCAACATTTTCTTTCC+AGG + chr4.1:39500690-39500709 None:intergenic 35.0%
! CAACAATTCTTGGTGTGTAT+AGG + chr4.1:39503686-39503705 None:intergenic 35.0%
! CAGTGTTTTTCCCTAAACAT+TGG - chr4.1:39503805-39503824 MS.gene050129:CDS 35.0%
! CATGTTCATTAGCTCTTGAA+GGG + chr4.1:39500355-39500374 None:intergenic 35.0%
! CCTACCTTTTCATCAAGTTT+GGG - chr4.1:39500491-39500510 MS.gene050129:CDS 35.0%
! CTTCTGTGTCTAAAGTTCTT+TGG - chr4.1:39502758-39502777 MS.gene050129:intron 35.0%
! GGTTAGTTGAAAAACTTGCT+TGG + chr4.1:39503998-39504017 None:intergenic 35.0%
! GTTGAAAAACTTGCTTGGTT+TGG + chr4.1:39503993-39504012 None:intergenic 35.0%
! TCATGTTCATTAGCTCTTGA+AGG + chr4.1:39500356-39500375 None:intergenic 35.0%
! TCTTTGTCTTTTGGATCTAC+TGG + chr4.1:39502187-39502206 None:intergenic 35.0%
! TGTGTCTAAAGTTCTTTGGA+TGG - chr4.1:39502762-39502781 MS.gene050129:intron 35.0%
! TTCAAGTTCGTGATGATCAA+TGG - chr4.1:39502275-39502294 MS.gene050129:intron 35.0%
! TTTGTCATCTAGTTCAACCA+TGG - chr4.1:39503023-39503042 MS.gene050129:intron 35.0%
!! AAGATCTTTGATTTGGGTGT+TGG - chr4.1:39502541-39502560 MS.gene050129:intron 35.0%
!! AAGTCATTGTTTGACTTGGA+TGG + chr4.1:39501678-39501697 None:intergenic 35.0%
!! AATCAGGCTGTTTCTCTTAA+GGG - chr4.1:39504173-39504192 MS.gene050129:CDS 35.0%
!! AGCAGTGTATTCTAGTTTGA+AGG - chr4.1:39502606-39502625 MS.gene050129:intron 35.0%
!! CTTAGTGTTTTTGATCCATG+TGG + chr4.1:39503471-39503490 None:intergenic 35.0%
!! CTTGCTTGGTTTGGAAAATT+TGG + chr4.1:39503984-39504003 None:intergenic 35.0%
!! GAGTTTTAGTCGAAATACGA+CGG - chr4.1:39499879-39499898 MS.gene050129:CDS 35.0%
!! GCAGTGTATTCTAGTTTGAA+GGG - chr4.1:39502607-39502626 MS.gene050129:intron 35.0%
!! GTTGATGATGATATGATACC+TGG - chr4.1:39500669-39500688 MS.gene050129:CDS 35.0%
!! TGTGAGAAAAGCTTTGAAGA+TGG - chr4.1:39502687-39502706 MS.gene050129:intron 35.0%
!! TTTGTTGTGCCTGATTTTTG+AGG + chr4.1:39499970-39499989 None:intergenic 35.0%
!!! CACTTCCAATGGTTTTGTTT+TGG + chr4.1:39500329-39500348 None:intergenic 35.0%
!!! TACATTGGTTCTTTTGCCTA+GGG - chr4.1:39502735-39502754 MS.gene050129:intron 35.0%
!!! TGATTTTTGAGGCTTGGTTT+TGG + chr4.1:39499959-39499978 None:intergenic 35.0%
AAATTATGGGGGTTCATGCA+TGG + chr4.1:39501121-39501140 None:intergenic 40.0%
AAGTTCGTGATGATCAATGG+TGG - chr4.1:39502278-39502297 MS.gene050129:intron 40.0%
AAGTTTGGGTGCTTTCTTTC+GGG - chr4.1:39500505-39500524 MS.gene050129:CDS 40.0%
AATCCGATCGAATGTGTTTC+TGG + chr4.1:39502091-39502110 None:intergenic 40.0%
ACACCAGAAACACATTCGAT+CGG - chr4.1:39502085-39502104 MS.gene050129:intron 40.0%
AGAAGAAGAATCATCCAAGG+TGG - chr4.1:39503489-39503508 MS.gene050129:CDS 40.0%
AGCACCCAAACTTGATGAAA+AGG + chr4.1:39500498-39500517 None:intergenic 40.0%
ATCTCCTAGATAGTAGGCAT+TGG + chr4.1:39503373-39503392 None:intergenic 40.0%
ATGATCACACCACACATTGT+AGG - chr4.1:39500126-39500145 MS.gene050129:CDS 40.0%
CAAATCTTCACCAGTTGAGA+AGG + chr4.1:39500967-39500986 None:intergenic 40.0%
CAAGTTTGGGTGCTTTCTTT+CGG - chr4.1:39500504-39500523 MS.gene050129:CDS 40.0%
CATCTGGCTACATAACACAA+TGG - chr4.1:39502311-39502330 MS.gene050129:intron 40.0%
CCAAAGTTGTCATCTGAAGA+TGG + chr4.1:39503546-39503565 None:intergenic 40.0%
CCATCTTCAGATGACAACTT+TGG - chr4.1:39503543-39503562 MS.gene050129:CDS 40.0%
CCCAAACTTGATGAAAAGGT+AGG + chr4.1:39500494-39500513 None:intergenic 40.0%
CGTTCTTTGCAAACCAAAAG+AGG + chr4.1:39502514-39502533 None:intergenic 40.0%
GAGAAACAGCCTGATTGAAA+AGG + chr4.1:39504169-39504188 None:intergenic 40.0%
GATGGTAATCTTGAAGCTGA+AGG + chr4.1:39504140-39504159 None:intergenic 40.0%
GTCATTCAACATTCCATCCA+AGG + chr4.1:39499920-39499939 None:intergenic 40.0%
GTGATATCATAAGCAGGATC+AGG + chr4.1:39500852-39500871 None:intergenic 40.0%
TAAGAGCAGTGAGTGAAAGT+TGG - chr4.1:39503517-39503536 MS.gene050129:CDS 40.0%
TCAACTAACCATATGGAACC+AGG - chr4.1:39504008-39504027 MS.gene050129:CDS 40.0%
TCACCAGTTGAGAAGGTAAA+AGG + chr4.1:39500960-39500979 None:intergenic 40.0%
TGAACCAACCTTGGTTTAAC+CGG + chr4.1:39502984-39503003 None:intergenic 40.0%
TGATCACACCACACATTGTA+GGG - chr4.1:39500127-39500146 MS.gene050129:CDS 40.0%
TGATGAAGGTAAGGTGTGTT+CGG + chr4.1:39503765-39503784 None:intergenic 40.0%
TGGACCTTTCAAATCCCATT+TGG + chr4.1:39500382-39500401 None:intergenic 40.0%
TGTGAATGCAGTATCTTGTC+CGG + chr4.1:39502000-39502019 None:intergenic 40.0%
TTAGCACTAATATGTGCACC+TGG + chr4.1:39504029-39504048 None:intergenic 40.0%
TTTGCAGACAGAAGCTGATT+TGG - chr4.1:39500638-39500657 MS.gene050129:CDS 40.0%
! ACTCCTTTTACCTTCTCAAC+TGG - chr4.1:39500954-39500973 MS.gene050129:intron 40.0%
! CCCAAGTGTTGTTATTACTG+TGG - chr4.1:39502648-39502667 MS.gene050129:intron 40.0%
! CCCCATGTTTCTTTGTCTTT+TGG + chr4.1:39502196-39502215 None:intergenic 40.0%
! CCCTACCTTTTCATCAAGTT+TGG - chr4.1:39500490-39500509 MS.gene050129:CDS 40.0%
! GTTGCTGTTGATCATCATAC+TGG - chr4.1:39504260-39504279 MS.gene050129:CDS 40.0%
! TAAACCAAGGTTGGTTCAAC+TGG - chr4.1:39502986-39503005 MS.gene050129:intron 40.0%
! TTACATGTGTTGGTGCACTA+GGG - chr4.1:39502041-39502060 MS.gene050129:intron 40.0%
! TTGGTTTGATCCTGAGTACT+CGG - chr4.1:39502932-39502951 MS.gene050129:intron 40.0%
! TTTACATGTGTTGGTGCACT+AGG - chr4.1:39502040-39502059 MS.gene050129:intron 40.0%
!! ATCGAATGTGTTTCTGGTGT+CGG + chr4.1:39502085-39502104 None:intergenic 40.0%
!! CAATCAGGCTGTTTCTCTTA+AGG - chr4.1:39504172-39504191 MS.gene050129:CDS 40.0%
!! TGGCTTGTTCCTGATTTAAC+TGG + chr4.1:39502903-39502922 None:intergenic 40.0%
!! TTGGGTGTTGGTTCAATTTC+CGG - chr4.1:39502553-39502572 MS.gene050129:intron 40.0%
!!! CTACATTGGTTCTTTTGCCT+AGG - chr4.1:39502734-39502753 MS.gene050129:intron 40.0%
!!! TTTTGAGGTGCCATTGTTGA+AGG - chr4.1:39504079-39504098 MS.gene050129:CDS 40.0%
ACTTTAGACACAGAAGCCCT+AGG + chr4.1:39502754-39502773 None:intergenic 45.0%
AGAAGTGGAGATTCCTTGGA+TGG - chr4.1:39499904-39499923 MS.gene050129:CDS 45.0%
AGATCTTGGCACATGTAGCT+GGG - chr4.1:39500706-39500725 MS.gene050129:CDS 45.0%
AGCTTTCCACGATTCTCTTG+AGG + chr4.1:39500548-39500567 None:intergenic 45.0%
AGGTTGAACCGGTTAAACCA+AGG - chr4.1:39502973-39502992 MS.gene050129:intron 45.0%
CAAATGGTTGGCAAGCTTCA+TGG - chr4.1:39503907-39503926 MS.gene050129:CDS 45.0%
CAATGTGTGGTGTGATCATG+AGG + chr4.1:39500125-39500144 None:intergenic 45.0%
CAGAATCTTGAGCAGTGATG+AGG + chr4.1:39504290-39504309 None:intergenic 45.0%
CTCACCAATGCCTACTATCT+AGG - chr4.1:39503366-39503385 MS.gene050129:CDS 45.0%
CTTAAGGGACTTAAAGCTGC+TGG - chr4.1:39504188-39504207 MS.gene050129:CDS 45.0%
GAAACCAGTTGAACCAACCT+TGG + chr4.1:39502993-39503012 None:intergenic 45.0%
GAGAGACTTGAGGGTCATAA+TGG + chr4.1:39503641-39503660 None:intergenic 45.0%
GCATACATTGTTGTCTCTGG+TGG - chr4.1:39502445-39502464 MS.gene050129:intron 45.0%
GCTTTCCACGATTCTCTTGA+GGG + chr4.1:39500547-39500566 None:intergenic 45.0%
GGTTCATTTGAATGGCCACA+TGG - chr4.1:39503453-39503472 MS.gene050129:CDS 45.0%
GTGACTGAACAAGGTTGAAC+CGG - chr4.1:39502962-39502981 MS.gene050129:intron 45.0%
GTGCTCAACTAGTTGCCATT+AGG - chr4.1:39501706-39501725 MS.gene050129:CDS 45.0%
GTTCAACCTTGTTCAGTCAC+CGG + chr4.1:39502962-39502981 None:intergenic 45.0%
TATGTGCACCTGGTTCCATA+TGG + chr4.1:39504019-39504038 None:intergenic 45.0%
TGAACCGGTTAAACCAAGGT+TGG - chr4.1:39502977-39502996 MS.gene050129:intron 45.0%
TGAGAGAAGATGCAGCTTCT+TGG + chr4.1:39500158-39500177 None:intergenic 45.0%
TTAAACCCTGTCACAGACAC+CGG - chr4.1:39501978-39501997 MS.gene050129:CDS 45.0%
TTGAAGGGTCTCACTTCCAA+TGG + chr4.1:39500340-39500359 None:intergenic 45.0%
! AAAGCTGCTGGTGCTAAGTT+GGG - chr4.1:39504200-39504219 MS.gene050129:CDS 45.0%
! AGCTCTCAAATGGCCTCTTT+TGG - chr4.1:39502498-39502517 MS.gene050129:intron 45.0%
! TAAAGCTGCTGGTGCTAAGT+TGG - chr4.1:39504199-39504218 MS.gene050129:CDS 45.0%
! TCTTGGTGTGTATAGGGAGA+TGG + chr4.1:39503679-39503698 None:intergenic 45.0%
! TGGTAATGCCCTACAATGTG+TGG + chr4.1:39500138-39500157 None:intergenic 45.0%
!! TGGGTGTTGGTTCAATTTCC+GGG - chr4.1:39502554-39502573 MS.gene050129:intron 45.0%
!! TGGTGGAAAGCACTTTCATC+TGG - chr4.1:39502295-39502314 MS.gene050129:intron 45.0%
!!! TGTGCCTGATTTTTGAGGCT+TGG + chr4.1:39499965-39499984 None:intergenic 45.0%
!! GTATAATAAAATAAAATTAT+GGG + chr4.1:39501134-39501153 None:intergenic 5.0%
!! TATAATAAAATAAAATTATG+GGG + chr4.1:39501133-39501152 None:intergenic 5.0%
AACACTGCTCCCCAACTACA+AGG + chr4.1:39503792-39503811 None:intergenic 50.0%
AAGCTGCAGCAGCTCTCAAA+TGG - chr4.1:39502488-39502507 MS.gene050129:intron 50.0%
AGGGAGATGGAAGAGAGTTC+TGG + chr4.1:39503666-39503685 None:intergenic 50.0%
CTGCTCTTATGAGTCCACCT+TGG + chr4.1:39503506-39503525 None:intergenic 50.0%
CTGGTGAAGATTTGCACCTC+AGG - chr4.1:39500973-39500992 MS.gene050129:intron 50.0%
GAAGGTAAGGTGTGTTCGGA+TGG + chr4.1:39503761-39503780 None:intergenic 50.0%
GAGATCTTGGCACATGTAGC+TGG - chr4.1:39500705-39500724 MS.gene050129:CDS 50.0%
GGGAGATGGAAGAGAGTTCT+GGG + chr4.1:39503665-39503684 None:intergenic 50.0%
TTCTTTCGGGAGTCCAAACG+AGG - chr4.1:39500518-39500537 MS.gene050129:CDS 50.0%
!! AGTTCTGGGAGAGAGACTTG+AGG + chr4.1:39503651-39503670 None:intergenic 50.0%
!! GCTGAAGGCATCTTCATTCC+AGG + chr4.1:39504125-39504144 None:intergenic 50.0%
!! GGGTGTTGGTTCAATTTCCG+GGG - chr4.1:39502555-39502574 MS.gene050129:intron 50.0%
!! GTTCTGGGAGAGAGACTTGA+GGG + chr4.1:39503650-39503669 None:intergenic 50.0%
ATCCTGAGTACTCGGCAGTC+CGG - chr4.1:39502940-39502959 MS.gene050129:intron 55.0%
CGAAATACGACGGCGAGAAG+TGG - chr4.1:39499889-39499908 MS.gene050129:CDS 55.0%
CTTGTCCGGTGTCTGTGACA+GGG + chr4.1:39501986-39502005 None:intergenic 55.0%
GGCGAGAAGTGGAGATTCCT+TGG - chr4.1:39499900-39499919 MS.gene050129:CDS 55.0%
TCTTGTCCGGTGTCTGTGAC+AGG + chr4.1:39501987-39502006 None:intergenic 55.0%
! GCTGCTGCAGCTTGTTCACA+AGG + chr4.1:39502481-39502500 None:intergenic 55.0%
! TGCTGGTGCTAAGTTGGGAC+AGG - chr4.1:39504205-39504224 MS.gene050129:CDS 55.0%
CTCTTGAGGGACGCCTCGTT+TGG + chr4.1:39500534-39500553 None:intergenic 60.0%
GGCAGTCCGGTGACTGAACA+AGG - chr4.1:39502953-39502972 MS.gene050129:intron 60.0%
GGCGTCCCTCAAGAGAATCG+TGG - chr4.1:39500539-39500558 MS.gene050129:CDS 60.0%
TGCCTCAGAGTTCGACACCC+CGG + chr4.1:39502575-39502594 None:intergenic 60.0%
!! TTCCGGGGTGTCGAACTCTG+AGG - chr4.1:39502570-39502589 MS.gene050129:intron 60.0%
CACCGGACTGCCGAGTACTC+AGG + chr4.1:39502945-39502964 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr4.1 gene 39499877 39504310 39499877 ID=MS.gene050129
chr4.1 mRNA 39499877 39504310 39499877 ID=MS.gene050129.t1;Parent=MS.gene050129
chr4.1 exon 39503193 39504310 39503193 ID=MS.gene050129.t1.exon1;Parent=MS.gene050129.t1
chr4.1 CDS 39503193 39504310 39503193 ID=cds.MS.gene050129.t1;Parent=MS.gene050129.t1
chr4.1 exon 39501376 39502046 39501376 ID=MS.gene050129.t1.exon2;Parent=MS.gene050129.t1
chr4.1 CDS 39501376 39502046 39501376 ID=cds.MS.gene050129.t1;Parent=MS.gene050129.t1
chr4.1 exon 39499877 39500898 39499877 ID=MS.gene050129.t1.exon3;Parent=MS.gene050129.t1
chr4.1 CDS 39499877 39500898 39499877 ID=cds.MS.gene050129.t1;Parent=MS.gene050129.t1
Gene Sequence

>MS.gene050129

ATGAGTTTTAGTCGAAATACGACGGCGAGAAGTGGAGATTCCTTGGATGGAATGTTGAATGACTATGTTGCTGGAAAGACCAAAACCAAGCCTCAAAAATCAGGCACAACAAAGTTTGTTGCAGCACTAACATGTCTTCAATTTTTCTTTGCAGTCTATGCAACATTTTTATTGTACTACATGGGTCCTTCAATTGATTTAAGAACCAAACCAGATTTCTCAAGAATTGCACAACAATGGAAAAGCCTCATGATCACACCACACATTGTAGGGCATTACCAAGAAGCTGCATCTTCTCTCATCCAAGAAGATAACAATAACCAATTTCAAGCCACATCAATTCCATCTCTTGTTTGTGAGAATGAAAAAATTGATTTCTTGCAAAAGAAGTCAAATGATGTTCAAATGATCAAGTTAAAGAGAGAGCTTTATGAAGAGGTTTTGAATTTCCAAAACAAAACCATTGGAAGTGAGACCCTTCAAGAGCTAATGAACATGAAATCCAAATGGGATTTGAAAGGTCCAAATCCAAACAAACCGAAAATCAATGTTTTGTTGAACCATTTCAAGAGAAAAACACTTTGTGCACAACTTGATTCATTGCTTCAACAAACCCTACCTTTTCATCAAGTTTGGGTGCTTTCTTTCGGGAGTCCAAACGAGGCGTCCCTCAAGAGAATCGTGGAAAGCTATAACGATTCACGGATAAGTTTCATAAGCTCGAGTTACGATTTTAAGTACTATGGAAGGTTTCAAATGGCTTTGCAGACAGAAGCTGATTTGGTTTATATTGTTGATGATGATATGATACCTGGAAAGAAAATGTTGGAGATCTTGGCACATGTAGCTGGGACTGAAAAGTATAAGAATTCTGTTTTGGGAAGTATTGGGAGAATATTGCCATTTAGACAAAAGGATTTTACTTTTCCAAGTTATAGGAAATTTAAGTCTAAAGAAGCTGGATTATATTTACCTGATCCTGCTTATGATATCACTATTGATAAAATTGTGCAGGTTGATTTTCTTTCAAGTTCTTGGTTTTTATCTGCTGAGCTTGTTAAGACACTTTTCATTGAGACTCCTTTTACCTTCTCAACTGGTGAAGATTTGCACCTCAGGTACAATCATATTGTCTACTTTGTTTTTACATCTTGTTAACTTTTTTCTTTTACTATTTTATGATAATATATATTTTTAAAAAAAAAAAAATTGGATAGAGTTTGATTTTTATGCTATATGTGCCATGCATGAACCCCCATAATTTTATTTTATTATACCATATGCAATTTTATTTTATGATGAATGAATGTCATTTATGTAGTATCACCAAAAAAAATGTCATTTATGTAGTGATAAAATGTCAAATATATATAAAGAGTACATGTTATTATTAAATATTATATAGTTTAGAGAAGAAAACTATCACTTTAATTTAATAAAAAGCATAGTGAAAAAACTATTTATCTTATTAAAAATAATCTAATAATTCAAATATCTAATATATTTTTTATCTAAAAAAAAGTTTGTCCAACATGTGTAATATTGTCTATGTTAAAGTAACTAAAAGTAACAATTTTTTTATTGAAAAACAACAATTATTTATCTAAAATTTATATATTTAATATAAAATGCACAAGTTCCGATACAAACATACTAGTTTAAACTTTTTAACATAGTGTAAATTTGTACTCCTTAACATTTTTCTTTATTTTAATATAGAAAATCTTTGGATATACGCCACTTACTTTAATTTAGTGAAAATTTAACAAATTAGCTGTGAAATTTGTTTGAACGTTGACCATCCAAGTCAAACAATGACTTATTTGGTAGTGCTCAACTAGTTGCCATTAGGTTCAGAAACACTTGTAGTAAGCATATCTTATTCCTTTGAAATCAGAATTCCAAAGACTTTTTCTCTAGTGTCAACTACTATATATGTTTTTCTTACTACAACTAGTGTACTTTATTCAATTTTCATATGAAGGAATCTTCTTATTTTATTCCTCTATTTGCAATCAAACAAACTCTTATTTTTATTATTGCATTTGACTTAAATGTTCATTTTATTTGACACTTTGAATCCGCAAACAATTTCAAACTATTAAACCCTGTCACAGACACCGGACAAGATACTGCATTCACACGTAGACACCAGTAATAATTTTTACATGTGTTGGTGCACTAGGGTTGAACGCTAAAACTTGTCCGACACCAGAAACACATTCGATCGGATTTACTGAAAAATCTTTTGATATTGTTTGCAGCTATCAGCTTCAAAAGTATAGAAATGCAGGCTCATTTGTTCTACCAGTAGATCCAAAAGACAAAGAAACATGGGGTGATAGTGAACACAGACTAGCCTATGTATCAGAAACAACAGTAATTTTCAAAGACATAGTTCAAGTTCGTGATGATCAATGGTGGAAAGCACTTTCATCTGGCTACATAACACAATGGGCAGCAATGTACCCACAAAAAATTGATGCACTCTTCTATGCACATTCAGTTGATGAAGTAAAAGCACTTTCACCACTTCTTGAAAAATTTAGATCAACAGTTGGCAAAAAAGCATACATTGTTGTCTCTGGTGGAAATTTCTGTCCTTGTGAACAAGCTGCAGCAGCTCTCAAATGGCCTCTTTTGGTTTGCAAAGAACGTCGTTTTAAGATCTTTGATTTGGGTGTTGGTTCAATTTCCGGGGTGTCGAACTCTGAGGCACCAGTTATACAAGCAGTGTATTCTAGTTTGAAGGGTTTGATTAAAATTCATAACCCAAGTGTTGTTATTACTGTGGATGATATTGATGTTAATGTGAGAAAAGCTTTGAAGATGGCTTCAGAAACTAATTCAAATGGTACTACATTGGTTCTTTTGCCTAGGGCTTCTGTGTCTAAAGTTCTTTGGATGGCTGATTTGAGATCAACAGCATTGCCAAGTAAGAAAGTCTATTTTTTTCTTTCTAAATTGCATTTCTTAACTCTAGATTAGATTATTAATAATGGTTTAAGTCAATGTTTTAAATACCAGTTAAATCAGGAACAAGCCAATTTGTCAATTGGTTTGATCCTGAGTACTCGGCAGTCCGGTGACTGAACAAGGTTGAACCGGTTAAACCAAGGTTGGTTCAACTGGTTTCTATTTGTTTATTTGTCATCTAGTTCAACCATGGTTAAACAGATTAAACCGATTAAAACATAATCTAATGGTTTCACTAATTCAATCTCTCGTTCGACTTTCAAATCATGTGTTTAGATATCATAATAAACTTTGAATAGGTTTAACTCAACCCCTATCTTGACCATATCACTAAGATCTCTAACAAATGTGACCATATTTAGTAAAGTTTAACCTAGGAGTAATGCACAATAGTTCATTATGTTGTCTTAATTTTTTATACAATTTTCTCTTGCAGATTGGAATAAAATGAGGCTATCTATCAACATCATAACCCAAAACAGGGTAAATTCACTAACAAGGCTTCTCAAATCACTCACCAATGCCTACTATCTAGGAGATGAAATTCCAATCACTTTCAACATGGATAGTAGAGTTGATGAAGCAACCATAAAACTAGTAGGTTCATTTGAATGGCCACATGGATCAAAAACACTAAGAAGAAGAATCATCCAAGGTGGACTCATAAGAGCAGTGAGTGAAAGTTGGTATCCATCTTCAGATGACAACTTTGGATTACTACTTGAAGATGACATTGAAGTCTCACCTTATTACTACCTATGGATCAAATATGCACTCATGAATTACCATTATGACCCTCAAGTCTCTCTCCCAGAACTCTCTTCCATCTCCCTATACACACCAAGAATTGTTGAAGTTGTCAAAGAAAGACCGAAATGGAATGCGACAGAATTCTTCAAACAAATCCATCCGAACACACCTTACCTTCATCAATTACCTTGTAGTTGGGGAGCAGTGTTTTTCCCTAAACATTGGAGAGAGTTTTATGTTTACATGAACATGAGGTTCACCGAAGATGCTAAGAAAAACCCGGTTCAAATTCCGAAATCAAGAACAAATGGTTGGCAAGCTTCATGGAAAAAGTTTCTCATTGATATGATGTATTTAAGAGGGTATGTTAGTCTTTATCCAAATTTTCCAAACCAAGCAAGTTTTTCAACTAACCATATGGAACCAGGTGCACATATTAGTGCTAAAGATAATGTGGTTAAGCATAATAAAATGGATTTTGAGGTGCCATTGTTGAAGGATGATTTTAGGAATTTTTTGCCTGGAATGAAGATGCCTTCAGCTTCAAGATTACCATCTTTGAACCTTTTCAATCAGGCTGTTTCTCTTAAGGGACTTAAAGCTGCTGGTGCTAAGTTGGGACAGGATGTGCTTAGATGTAATAATGTTACTGAGATTGTTGCTGTTGATCATCATACTGGTCTACCTCATCACTGCTCAAGATTCTGA

Protein sequence

>MS.gene050129.t1

MSFSRNTTARSGDSLDGMLNDYVAGKTKTKPQKSGTTKFVAALTCLQFFFAVYATFLLYYMGPSIDLRTKPDFSRIAQQWKSLMITPHIVGHYQEAASSLIQEDNNNQFQATSIPSLVCENEKIDFLQKKSNDVQMIKLKRELYEEVLNFQNKTIGSETLQELMNMKSKWDLKGPNPNKPKINVLLNHFKRKTLCAQLDSLLQQTLPFHQVWVLSFGSPNEASLKRIVESYNDSRISFISSSYDFKYYGRFQMALQTEADLVYIVDDDMIPGKKMLEILAHVAGTEKYKNSVLGSIGRILPFRQKDFTFPSYRKFKSKEAGLYLPDPAYDITIDKIVQVDFLSSSWFLSAELVKTLFIETPFTFSTGEDLHLSYQLQKYRNAGSFVLPVDPKDKETWGDSEHRLAYVSETTVIFKDIVQVRDDQWWKALSSGYITQWAAMYPQKIDALFYAHSVDEVKALSPLLEKFRSTVGKKAYIVVSGGNFCPCEQAAAALKWPLLVCKERRFKIFDLGVGSISGVSNSEAPVIQAVYSSLKGLIKIHNPSVVITVDDIDVNVRKALKMASETNSNGTTLVLLPRASVSKVLWMADLRSTALPNWNKMRLSINIITQNRVNSLTRLLKSLTNAYYLGDEIPITFNMDSRVDEATIKLVGSFEWPHGSKTLRRRIIQGGLIRAVSESWYPSSDDNFGLLLEDDIEVSPYYYLWIKYALMNYHYDPQVSLPELSSISLYTPRIVEVVKERPKWNATEFFKQIHPNTPYLHQLPCSWGAVFFPKHWREFYVYMNMRFTEDAKKNPVQIPKSRTNGWQASWKKFLIDMMYLRGYVSLYPNFPNQASFSTNHMEPGAHISAKDNVVKHNKMDFEVPLLKDDFRNFLPGMKMPSASRLPSLNLFNQAVSLKGLKAAGAKLGQDVLRCNNVTEIVAVDHHTGLPHHCSRF