Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene050129.t1 | XP_003606369.2 | 98.5 | 936 | 14 | 0 | 1 | 936 | 1 | 936 | 0.00E+00 | 1878.2 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene050129.t1 | G7JND6 | 98.5 | 936 | 14 | 0 | 1 | 936 | 1 | 936 | 0.0e+00 | 1878.2 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049281 | MS.gene050129 | 0.814872 | 1.23E-51 | -1.69E-46 |
MS.gene049312 | MS.gene050129 | 0.838833 | 2.27E-57 | -1.69E-46 |
MS.gene049313 | MS.gene050129 | 0.800165 | 1.64E-48 | -1.69E-46 |
MS.gene050129 | MS.gene050381 | 0.828124 | 1.07E-54 | -1.69E-46 |
MS.gene050129 | MS.gene050504 | -0.812453 | 4.21E-51 | -1.69E-46 |
MS.gene050129 | MS.gene050883 | 0.820794 | 5.68E-53 | -1.69E-46 |
MS.gene050129 | MS.gene05141 | 0.819388 | 1.19E-52 | -1.69E-46 |
MS.gene050129 | MS.gene051946 | 0.824831 | 6.52E-54 | -1.69E-46 |
MS.gene050129 | MS.gene053549 | 0.82328 | 1.51E-53 | -1.69E-46 |
MS.gene050129 | MS.gene053561 | 0.802152 | 6.43E-49 | -1.69E-46 |
MS.gene050129 | MS.gene056310 | 0.801327 | 9.49E-49 | -1.69E-46 |
MS.gene050129 | MS.gene056311 | 0.802124 | 6.51E-49 | -1.69E-46 |
MS.gene050129 | MS.gene056550 | 0.833446 | 5.31E-56 | -1.69E-46 |
MS.gene050129 | MS.gene056761 | 0.805804 | 1.12E-49 | -1.69E-46 |
MS.gene050129 | MS.gene057014 | 0.825563 | 4.38E-54 | -1.69E-46 |
MS.gene050129 | MS.gene059022 | -0.819183 | 1.33E-52 | -1.69E-46 |
MS.gene050129 | MS.gene06077 | -0.810916 | 9.09E-51 | -1.69E-46 |
MS.gene050129 | MS.gene061340 | -0.80098 | 1.12E-48 | -1.69E-46 |
MS.gene050129 | MS.gene063874 | 0.814237 | 1.71E-51 | -1.69E-46 |
MS.gene050129 | MS.gene067979 | 0.841692 | 4.07E-58 | -1.69E-46 |
MS.gene050129 | MS.gene068138 | -0.806392 | 8.41E-50 | -1.69E-46 |
MS.gene050129 | MS.gene070982 | 0.829409 | 5.23E-55 | -1.69E-46 |
MS.gene050129 | MS.gene071810 | 0.800421 | 1.45E-48 | -1.69E-46 |
MS.gene050129 | MS.gene072476 | 0.815576 | 8.61E-52 | -1.69E-46 |
MS.gene050129 | MS.gene072806 | 0.81933 | 1.23E-52 | -1.69E-46 |
MS.gene050129 | MS.gene07329 | -0.819791 | 9.65E-53 | -1.69E-46 |
MS.gene050129 | MS.gene074189 | 0.805793 | 1.12E-49 | -1.69E-46 |
MS.gene050129 | MS.gene08195 | 0.802239 | 6.17E-49 | -1.69E-46 |
MS.gene050129 | MS.gene08322 | 0.802112 | 6.55E-49 | -1.69E-46 |
MS.gene050129 | MS.gene08692 | 0.87574 | 2.43E-68 | -1.69E-46 |
MS.gene050129 | MS.gene08754 | 0.904044 | 1.85E-79 | -1.69E-46 |
MS.gene050129 | MS.gene08918 | 0.811015 | 8.65E-51 | -1.69E-46 |
MS.gene050129 | MS.gene08919 | 0.808383 | 3.18E-50 | -1.69E-46 |
MS.gene050129 | MS.gene20870 | 0.800007 | 1.76E-48 | -1.69E-46 |
MS.gene050129 | MS.gene20878 | -0.803752 | 3.00E-49 | -1.69E-46 |
MS.gene050129 | MS.gene21577 | 0.804241 | 2.37E-49 | -1.69E-46 |
MS.gene050129 | MS.gene22726 | -0.806135 | 9.53E-50 | -1.69E-46 |
MS.gene050129 | MS.gene23413 | 0.818991 | 1.47E-52 | -1.69E-46 |
MS.gene050129 | MS.gene24025 | -0.817415 | 3.34E-52 | -1.69E-46 |
MS.gene050129 | MS.gene24082 | -0.80162 | 8.26E-49 | -1.69E-46 |
MS.gene050129 | MS.gene24491 | 0.815745 | 7.90E-52 | -1.69E-46 |
MS.gene050129 | MS.gene29342 | 0.81966 | 1.03E-52 | -1.69E-46 |
MS.gene050129 | MS.gene29965 | 0.800242 | 1.58E-48 | -1.69E-46 |
MS.gene050129 | MS.gene29992 | -0.802037 | 6.78E-49 | -1.69E-46 |
MS.gene050129 | MS.gene30394 | 0.800499 | 1.40E-48 | -1.69E-46 |
MS.gene050129 | MS.gene30995 | 0.836014 | 1.20E-56 | -1.69E-46 |
MS.gene050129 | MS.gene32567 | 0.803804 | 2.93E-49 | -1.69E-46 |
MS.gene050129 | MS.gene32652 | -0.809041 | 2.30E-50 | -1.69E-46 |
MS.gene050129 | MS.gene33913 | 0.806316 | 8.73E-50 | -1.69E-46 |
MS.gene050129 | MS.gene34412 | 0.859683 | 3.49E-63 | -1.69E-46 |
MS.gene050129 | MS.gene36927 | 0.817448 | 3.28E-52 | -1.69E-46 |
MS.gene050129 | MS.gene37538 | 0.806567 | 7.73E-50 | -1.69E-46 |
MS.gene050129 | MS.gene37678 | 0.857721 | 1.35E-62 | -1.69E-46 |
MS.gene050129 | MS.gene38097 | 0.818648 | 1.76E-52 | -1.69E-46 |
MS.gene050129 | MS.gene38172 | 0.80831 | 3.30E-50 | -1.69E-46 |
MS.gene050129 | MS.gene41567 | 0.804218 | 2.40E-49 | -1.69E-46 |
MS.gene050129 | MS.gene41739 | 0.810805 | 9.60E-51 | -1.69E-46 |
MS.gene050129 | MS.gene42383 | 0.805201 | 1.50E-49 | -1.69E-46 |
MS.gene050129 | MS.gene44099 | -0.803656 | 3.14E-49 | -1.69E-46 |
MS.gene050129 | MS.gene44720 | 0.80574 | 1.15E-49 | -1.69E-46 |
MS.gene050129 | MS.gene44721 | 0.800439 | 1.44E-48 | -1.69E-46 |
MS.gene050129 | MS.gene46058 | 0.814739 | 1.32E-51 | -1.69E-46 |
MS.gene050129 | MS.gene46433 | 0.809104 | 2.23E-50 | -1.69E-46 |
MS.gene050129 | MS.gene47109 | 0.822047 | 2.92E-53 | -1.69E-46 |
MS.gene050129 | MS.gene47831 | -0.803446 | 3.47E-49 | -1.69E-46 |
MS.gene050129 | MS.gene49181 | 0.836872 | 7.25E-57 | -1.69E-46 |
MS.gene050129 | MS.gene51018 | 0.817065 | 4.00E-52 | -1.69E-46 |
MS.gene050129 | MS.gene55469 | 0.814691 | 1.35E-51 | -1.69E-46 |
MS.gene050129 | MS.gene58464 | 0.820412 | 6.96E-53 | -1.69E-46 |
MS.gene050129 | MS.gene58945 | 0.812798 | 3.54E-51 | -1.69E-46 |
MS.gene050129 | MS.gene60649 | 0.812033 | 5.20E-51 | -1.69E-46 |
MS.gene050129 | MS.gene62174 | 0.808074 | 3.70E-50 | -1.69E-46 |
MS.gene050129 | MS.gene63292 | 0.807225 | 5.61E-50 | -1.69E-46 |
MS.gene050129 | MS.gene63502 | 0.850006 | 2.24E-60 | -1.69E-46 |
MS.gene050129 | MS.gene63691 | 0.817658 | 2.94E-52 | -1.69E-46 |
MS.gene050129 | MS.gene64235 | 0.803617 | 3.20E-49 | -1.69E-46 |
MS.gene050129 | MS.gene64615 | 0.805129 | 1.55E-49 | -1.69E-46 |
MS.gene050129 | MS.gene64630 | 0.812464 | 4.18E-51 | -1.69E-46 |
MS.gene050129 | MS.gene65672 | 0.804827 | 1.79E-49 | -1.69E-46 |
MS.gene050129 | MS.gene67232 | -0.801809 | 7.56E-49 | -1.69E-46 |
MS.gene050129 | MS.gene67682 | 0.814843 | 1.25E-51 | -1.69E-46 |
MS.gene050129 | MS.gene67744 | 0.801699 | 7.96E-49 | -1.69E-46 |
MS.gene050129 | MS.gene68851 | 0.817686 | 2.90E-52 | -1.69E-46 |
MS.gene050129 | MS.gene69071 | 0.804629 | 1.97E-49 | -1.69E-46 |
MS.gene050129 | MS.gene70809 | -0.801734 | 7.83E-49 | -1.69E-46 |
MS.gene050129 | MS.gene76146 | 0.816225 | 6.17E-52 | -1.69E-46 |
MS.gene050129 | MS.gene78593 | 0.817516 | 3.17E-52 | -1.69E-46 |
MS.gene050129 | MS.gene78894 | 0.804722 | 1.88E-49 | -1.69E-46 |
MS.gene050129 | MS.gene79150 | 0.811711 | 6.11E-51 | -1.69E-46 |
MS.gene050129 | MS.gene79803 | 0.80465 | 1.95E-49 | -1.69E-46 |
MS.gene050129 | MS.gene82958 | 0.842378 | 2.68E-58 | -1.69E-46 |
MS.gene050129 | MS.gene83843 | 0.813413 | 2.59E-51 | -1.69E-46 |
MS.gene050129 | MS.gene85220 | 0.813588 | 2.37E-51 | -1.69E-46 |
MS.gene050129 | MS.gene88820 | -0.800861 | 1.18E-48 | -1.69E-46 |
MS.gene050129 | MS.gene90192 | 0.84979 | 2.58E-60 | -1.69E-46 |
MS.gene050129 | MS.gene90201 | 0.802774 | 4.78E-49 | -1.69E-46 |
MS.gene050129 | MS.gene91775 | 0.806277 | 8.89E-50 | -1.69E-46 |
MS.gene050129 | MS.gene91801 | -0.802933 | 4.43E-49 | -1.69E-46 |
MS.gene050129 | MS.gene91973 | 0.800159 | 1.64E-48 | -1.69E-46 |
MS.gene050129 | MS.gene92774 | 0.802699 | 4.96E-49 | -1.69E-46 |
MS.gene050129 | MS.gene94262 | 0.812215 | 4.74E-51 | -1.69E-46 |
MS.gene050129 | MS.gene94806 | -0.800485 | 1.41E-48 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene050129.t1 | MTR_4g058760 | 98.504 | 936 | 14 | 0 | 1 | 936 | 1 | 936 | 0.0 | 1927 |
MS.gene050129.t1 | MTR_8g023050 | 27.795 | 331 | 189 | 10 | 592 | 888 | 52 | 366 | 1.83e-29 | 125 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene050129.t1 | AT5G60700 | 80.831 | 939 | 170 | 4 | 1 | 936 | 1 | 932 | 0.0 | 1580 |
MS.gene050129.t1 | AT5G60700 | 86.677 | 668 | 89 | 0 | 269 | 936 | 1 | 668 | 0.0 | 1222 |
MS.gene050129.t1 | AT5G12260 | 31.203 | 266 | 148 | 10 | 605 | 846 | 73 | 327 | 1.78e-27 | 119 |
Find 161 sgRNAs with CRISPR-Local
Find 271 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTTGCTTGGTTTGGAAAATT+TGG | 0.065005 | 4.1:+39500184 | None:intergenic |
CCCCATGTTTCTTTGTCTTT+TGG | 0.116342 | 4.1:+39501972 | None:intergenic |
TTGGGTGTTGGTTCAATTTC+CGG | 0.172581 | 4.1:-39501612 | MS.gene050129:CDS |
CAACCATTTGTTCTTGATTT+CGG | 0.225293 | 4.1:+39500271 | None:intergenic |
TTGACAACTTCAACAATTCT+TGG | 0.227499 | 4.1:+39500472 | None:intergenic |
TAAAACTCTCTCCAATGTTT+AGG | 0.235717 | 4.1:+39500349 | None:intergenic |
CAATCAGGCTGTTTCTCTTA+AGG | 0.258718 | 4.1:-39499993 | MS.gene050129:CDS |
CTTCTGTGTCTAAAGTTCTT+TGG | 0.263805 | 4.1:-39501407 | MS.gene050129:CDS |
ATTGGTTATTGTTATCTTCT+TGG | 0.265866 | 4.1:+39503986 | None:intergenic |
AGGGAGATGGAAGAGAGTTC+TGG | 0.270847 | 4.1:+39500502 | None:intergenic |
TTAGTGAATTTACCCTGTTT+TGG | 0.274450 | 4.1:+39500839 | None:intergenic |
TGTGGTTAAGCATAATAAAA+TGG | 0.289497 | 4.1:-39500110 | MS.gene050129:CDS |
AAAGTATAAGAATTCTGTTT+TGG | 0.290647 | 4.1:-39503431 | MS.gene050129:CDS |
AAGTTTGGGTGCTTTCTTTC+GGG | 0.297498 | 4.1:-39503660 | MS.gene050129:CDS |
CAAGTTTGGGTGCTTTCTTT+CGG | 0.298260 | 4.1:-39503661 | MS.gene050129:CDS |
TGGGTGTTGGTTCAATTTCC+GGG | 0.301874 | 4.1:-39501611 | MS.gene050129:CDS |
GAATACACTGCTTGTATAAC+TGG | 0.310239 | 4.1:+39501570 | None:intergenic |
AATCAGGCTGTTTCTCTTAA+GGG | 0.311927 | 4.1:-39499992 | MS.gene050129:CDS |
AGCTCTCAAATGGCCTCTTT+TGG | 0.312366 | 4.1:-39501667 | MS.gene050129:CDS |
CAACAATTCTTGGTGTGTAT+AGG | 0.312888 | 4.1:+39500482 | None:intergenic |
TCACCAGTTGAGAAGGTAAA+AGG | 0.315759 | 4.1:+39503208 | None:intergenic |
AACAATTCTTGGTGTGTATA+GGG | 0.318766 | 4.1:+39500483 | None:intergenic |
CTCTTGAGGGACGCCTCGTT+TGG | 0.323081 | 4.1:+39503634 | None:intergenic |
GAATTGATGTGGCTTGAAAT+TGG | 0.323347 | 4.1:+39503968 | None:intergenic |
TTTGCAGACAGAAGCTGATT+TGG | 0.331055 | 4.1:-39503527 | MS.gene050129:CDS |
AAAACTCTCTCCAATGTTTA+GGG | 0.348787 | 4.1:+39500350 | None:intergenic |
AAAGAAAATGTTGGAGATCT+TGG | 0.355194 | 4.1:-39503473 | MS.gene050129:CDS |
CTTGATTTCGGAATTTGAAC+CGG | 0.360455 | 4.1:+39500283 | None:intergenic |
TTCATCAATTACCTTGTAGT+TGG | 0.366831 | 4.1:-39500387 | MS.gene050129:CDS |
TCATCAATTACCTTGTAGTT+GGG | 0.371809 | 4.1:-39500386 | MS.gene050129:CDS |
GGGAGATGGAAGAGAGTTCT+GGG | 0.371894 | 4.1:+39500503 | None:intergenic |
AATTCTGTCGCATTCCATTT+CGG | 0.373554 | 4.1:+39500442 | None:intergenic |
GACTTAAATTTCCTATAACT+TGG | 0.376357 | 4.1:+39503361 | None:intergenic |
TTGATCCATAGGTAGTAATA+AGG | 0.377040 | 4.1:+39500568 | None:intergenic |
TGAGAGAAGATGCAGCTTCT+TGG | 0.384331 | 4.1:+39504010 | None:intergenic |
CAAATGGTTGGCAAGCTTCA+TGG | 0.386635 | 4.1:-39500258 | MS.gene050129:CDS |
AAGATCTTTGATTTGGGTGT+TGG | 0.387293 | 4.1:-39501624 | MS.gene050129:CDS |
CTATCCATGTTGAAAGTGAT+TGG | 0.388496 | 4.1:+39500766 | None:intergenic |
TGTGCAATTCTTGAGAAATC+TGG | 0.389282 | 4.1:+39504078 | None:intergenic |
TCAACATCATAACCCAAAAC+AGG | 0.393205 | 4.1:-39500852 | MS.gene050129:CDS |
AACTAGTAGGTTCATTTGAA+TGG | 0.394328 | 4.1:-39500720 | MS.gene050129:CDS |
TGGACCTTTCAAATCCCATT+TGG | 0.397443 | 4.1:+39503786 | None:intergenic |
TACTGTTGTTTCTGATACAT+AGG | 0.399588 | 4.1:+39501929 | None:intergenic |
GCTGAAGGCATCTTCATTCC+AGG | 0.403202 | 4.1:+39500043 | None:intergenic |
GAGATCTTGGCACATGTAGC+TGG | 0.404092 | 4.1:-39503460 | MS.gene050129:CDS |
GCTTTCCACGATTCTCTTGA+GGG | 0.406469 | 4.1:+39503621 | None:intergenic |
AATATTGCCATTTAGACAAA+AGG | 0.408476 | 4.1:-39503395 | MS.gene050129:CDS |
CCATCTTCAGATGACAACTT+TGG | 0.415502 | 4.1:-39500622 | MS.gene050129:CDS |
AATTCTTGAGAAATCTGGTT+TGG | 0.422536 | 4.1:+39504083 | None:intergenic |
TAAAGCTGCTGGTGCTAAGT+TGG | 0.428332 | 4.1:-39499966 | MS.gene050129:CDS |
TCATGTTCATTAGCTCTTGA+AGG | 0.429882 | 4.1:+39503812 | None:intergenic |
AGCAGTGTATTCTAGTTTGA+AGG | 0.435732 | 4.1:-39501559 | MS.gene050129:CDS |
CGTTCTTTGCAAACCAAAAG+AGG | 0.435989 | 4.1:+39501654 | None:intergenic |
TAATGAACATGAAATCCAAA+TGG | 0.437665 | 4.1:-39503801 | MS.gene050129:CDS |
AAAGCATACATTGTTGTCTC+TGG | 0.442855 | 4.1:-39501723 | MS.gene050129:CDS |
GGCGAGAAGTGGAGATTCCT+TGG | 0.445610 | 4.1:-39504265 | MS.gene050129:CDS |
TCTCACCTTATTACTACCTA+TGG | 0.445983 | 4.1:-39500573 | MS.gene050129:CDS |
AATTTCATCTCCTAGATAGT+AGG | 0.446568 | 4.1:+39500789 | None:intergenic |
CTCACCAATGCCTACTATCT+AGG | 0.449528 | 4.1:-39500799 | MS.gene050129:CDS |
TTGAAGGGTCTCACTTCCAA+TGG | 0.454059 | 4.1:+39503828 | None:intergenic |
ATTGATATGATGTATTTAAG+AGG | 0.454107 | 4.1:-39500223 | MS.gene050129:CDS |
AGCACCCAAACTTGATGAAA+AGG | 0.455138 | 4.1:+39503670 | None:intergenic |
GAGAGACTTGAGGGTCATAA+TGG | 0.457607 | 4.1:+39500527 | None:intergenic |
TTGGTTCTTAAATCAATTGA+AGG | 0.462460 | 4.1:+39504102 | None:intergenic |
CACTATTGATAAAATTGTGC+AGG | 0.462476 | 4.1:-39503296 | MS.gene050129:CDS |
ATTCCGAAATCAAGAACAAA+TGG | 0.465756 | 4.1:-39500274 | MS.gene050129:CDS |
AAGCTGCAGCAGCTCTCAAA+TGG | 0.469839 | 4.1:-39501677 | MS.gene050129:CDS |
GTTGCTGTTGATCATCATAC+TGG | 0.470551 | 4.1:-39499905 | MS.gene050129:CDS |
AAATTTAAGTCTAAAGAAGC+TGG | 0.471279 | 4.1:-39503349 | MS.gene050129:CDS |
ATGATCACACCACACATTGT+AGG | 0.472550 | 4.1:-39504039 | MS.gene050129:CDS |
AAAGAGAGAGCTTTATGAAG+AGG | 0.472811 | 4.1:-39503872 | MS.gene050129:CDS |
AAAGCTGCTGGTGCTAAGTT+GGG | 0.474235 | 4.1:-39499965 | MS.gene050129:CDS |
ATGTTGAATGACTATGTTGC+TGG | 0.474502 | 4.1:-39504237 | MS.gene050129:CDS |
TGGTGGAAAGCACTTTCATC+TGG | 0.474973 | 4.1:-39501870 | MS.gene050129:CDS |
GTACTATGGAAGGTTTCAAA+TGG | 0.475657 | 4.1:-39503551 | MS.gene050129:CDS |
CTTCAAAAGTATAGAAATGC+AGG | 0.477205 | 4.1:-39502017 | MS.gene050129:CDS |
GAGAAACAGCCTGATTGAAA+AGG | 0.480437 | 4.1:+39499999 | None:intergenic |
TTGTCAAAGAAAGACCGAAA+TGG | 0.487112 | 4.1:-39500456 | MS.gene050129:CDS |
TGTGAGAAAAGCTTTGAAGA+TGG | 0.488545 | 4.1:-39501478 | MS.gene050129:CDS |
TGATCACACCACACATTGTA+GGG | 0.488995 | 4.1:-39504038 | MS.gene050129:CDS |
CTTAAGGGACTTAAAGCTGC+TGG | 0.489733 | 4.1:-39499977 | MS.gene050129:CDS |
GTGATATCATAAGCAGGATC+AGG | 0.492253 | 4.1:+39503316 | None:intergenic |
GAAGCAACCATAAAACTAGT+AGG | 0.492724 | 4.1:-39500733 | MS.gene050129:CDS |
GCTTCAGAAACTAATTCAAA+TGG | 0.494305 | 4.1:-39501456 | MS.gene050129:CDS |
AATTTCCAAAACAAAACCAT+TGG | 0.494665 | 4.1:-39503844 | MS.gene050129:CDS |
CAAGGTAATTGATGAAGGTA+AGG | 0.495150 | 4.1:+39500394 | None:intergenic |
GTTCTGGGAGAGAGACTTGA+GGG | 0.497749 | 4.1:+39500518 | None:intergenic |
TCCACAGTAATAACAACACT+TGG | 0.500700 | 4.1:+39501516 | None:intergenic |
CATGTTCATTAGCTCTTGAA+GGG | 0.501563 | 4.1:+39503813 | None:intergenic |
TGAGTGCATATTTGATCCAT+AGG | 0.502316 | 4.1:+39500557 | None:intergenic |
AATGAACATGAAATCCAAAT+GGG | 0.502594 | 4.1:-39503800 | MS.gene050129:CDS |
CTGGTGAAGATTTGCACCTC+AGG | 0.503101 | 4.1:-39503192 | MS.gene050129:intron |
TGATGAAGGTAAGGTGTGTT+CGG | 0.505188 | 4.1:+39500403 | None:intergenic |
ATCTGGCTACATAACACAAT+GGG | 0.506007 | 4.1:-39501853 | MS.gene050129:CDS |
CGAAATACGACGGCGAGAAG+TGG | 0.507540 | 4.1:-39504276 | MS.gene050129:CDS |
TGTGTCTAAAGTTCTTTGGA+TGG | 0.510078 | 4.1:-39501403 | MS.gene050129:CDS |
CCAAAGTTGTCATCTGAAGA+TGG | 0.511797 | 4.1:+39500622 | None:intergenic |
GCATACATTGTTGTCTCTGG+TGG | 0.511913 | 4.1:-39501720 | MS.gene050129:CDS |
CATCAATTACCTTGTAGTTG+GGG | 0.519801 | 4.1:-39500385 | MS.gene050129:CDS |
TCATTCTCACAAACAAGAGA+TGG | 0.521795 | 4.1:+39503946 | None:intergenic |
TTCAAGTTCGTGATGATCAA+TGG | 0.523870 | 4.1:-39501890 | MS.gene050129:CDS |
TGCTGGTGCTAAGTTGGGAC+AGG | 0.530192 | 4.1:-39499960 | MS.gene050129:CDS |
GAAGGTAAGGTGTGTTCGGA+TGG | 0.531888 | 4.1:+39500407 | None:intergenic |
AACTACAAGGTAATTGATGA+AGG | 0.532933 | 4.1:+39500389 | None:intergenic |
ATCTCCTAGATAGTAGGCAT+TGG | 0.534319 | 4.1:+39500795 | None:intergenic |
CTAAAATCATCCTTCAACAA+TGG | 0.535382 | 4.1:+39500076 | None:intergenic |
AGCTTTCCACGATTCTCTTG+AGG | 0.537297 | 4.1:+39503620 | None:intergenic |
GCAGTGTATTCTAGTTTGAA+GGG | 0.542949 | 4.1:-39501558 | MS.gene050129:CDS |
TTGATTTCGGAATTTGAACC+GGG | 0.544807 | 4.1:+39500284 | None:intergenic |
TATGTGCACCTGGTTCCATA+TGG | 0.547518 | 4.1:+39500149 | None:intergenic |
GCTGCTGCAGCTTGTTCACA+AGG | 0.548041 | 4.1:+39501687 | None:intergenic |
TGGAAAGCTATAACGATTCA+CGG | 0.548641 | 4.1:-39503606 | MS.gene050129:CDS |
CAAATCTTCACCAGTTGAGA+AGG | 0.549226 | 4.1:+39503201 | None:intergenic |
GATGGTAATCTTGAAGCTGA+AGG | 0.550276 | 4.1:+39500028 | None:intergenic |
TCTCAAGAATTGCACAACAA+TGG | 0.551342 | 4.1:-39504071 | MS.gene050129:CDS |
TCTTGGTGTGTATAGGGAGA+TGG | 0.554912 | 4.1:+39500489 | None:intergenic |
TTGCAGATTGGAATAAAATG+AGG | 0.555574 | 4.1:-39500882 | MS.gene050129:intron |
TCAATAGTGATATCATAAGC+AGG | 0.556245 | 4.1:+39503310 | None:intergenic |
GTCATTCAACATTCCATCCA+AGG | 0.556417 | 4.1:+39504248 | None:intergenic |
AACACTGCTCCCCAACTACA+AGG | 0.561032 | 4.1:+39500376 | None:intergenic |
TTGATATGATGTATTTAAGA+GGG | 0.562184 | 4.1:-39500222 | MS.gene050129:CDS |
TCCAAAAGACAAAGAAACAT+GGG | 0.566745 | 4.1:-39501973 | MS.gene050129:CDS |
AGAAGTGGAGATTCCTTGGA+TGG | 0.567533 | 4.1:-39504261 | MS.gene050129:CDS |
GATACCTGGAAAGAAAATGT+TGG | 0.567656 | 4.1:-39503482 | MS.gene050129:CDS |
TAATTCAAATGGTACTACAT+TGG | 0.567955 | 4.1:-39501445 | MS.gene050129:CDS |
TAAGAGCAGTGAGTGAAAGT+TGG | 0.570309 | 4.1:-39500648 | MS.gene050129:CDS |
CGAAATCAAGAACAAATGGT+TGG | 0.570974 | 4.1:-39500270 | MS.gene050129:CDS |
CTGCTCTTATGAGTCCACCT+TGG | 0.573990 | 4.1:+39500662 | None:intergenic |
AAATCCAAATGGGATTTGAA+AGG | 0.575214 | 4.1:-39503790 | MS.gene050129:CDS |
GTTGATGATGATATGATACC+TGG | 0.577017 | 4.1:-39503496 | MS.gene050129:CDS |
AGATCTTGGCACATGTAGCT+GGG | 0.577338 | 4.1:-39503459 | MS.gene050129:CDS |
CCAAACTTGATGAAAAGGTA+GGG | 0.586043 | 4.1:+39503675 | None:intergenic |
TTCTTTCGGGAGTCCAAACG+AGG | 0.586582 | 4.1:-39503647 | MS.gene050129:CDS |
TCAACTAACCATATGGAACC+AGG | 0.589500 | 4.1:-39500157 | MS.gene050129:CDS |
CAATGTGTGGTGTGATCATG+AGG | 0.593166 | 4.1:+39504043 | None:intergenic |
TTTATGTTTACATGAACATG+AGG | 0.594622 | 4.1:-39500330 | MS.gene050129:CDS |
CCCAAACTTGATGAAAAGGT+AGG | 0.596316 | 4.1:+39503674 | None:intergenic |
AATTCCAATCACTTTCAACA+TGG | 0.597469 | 4.1:-39500770 | MS.gene050129:CDS |
AGTTCTGGGAGAGAGACTTG+AGG | 0.603063 | 4.1:+39500517 | None:intergenic |
ATCCAAAAGACAAAGAAACA+TGG | 0.611454 | 4.1:-39501974 | MS.gene050129:CDS |
CAGAATCTTGAGCAGTGATG+AGG | 0.612938 | 4.1:+39499878 | None:intergenic |
GGGTGTTGGTTCAATTTCCG+GGG | 0.614538 | 4.1:-39501610 | MS.gene050129:CDS |
AACAAGAGATGGAATTGATG+TGG | 0.615514 | 4.1:+39503957 | None:intergenic |
TTAGCACTAATATGTGCACC+TGG | 0.615984 | 4.1:+39500139 | None:intergenic |
TGATTGAAAAGGTTCAAAGA+TGG | 0.616471 | 4.1:+39500010 | None:intergenic |
TGCCTCAGAGTTCGACACCC+CGG | 0.617245 | 4.1:+39501593 | None:intergenic |
GGTTCATTTGAATGGCCACA+TGG | 0.621803 | 4.1:-39500712 | MS.gene050129:CDS |
TATTAGTGCTAAAGATAATG+TGG | 0.629617 | 4.1:-39500128 | MS.gene050129:CDS |
TGGTAATGCCCTACAATGTG+TGG | 0.631361 | 4.1:+39504030 | None:intergenic |
CATCTGGCTACATAACACAA+TGG | 0.632893 | 4.1:-39501854 | MS.gene050129:CDS |
CAACATCATAACCCAAAACA+GGG | 0.633195 | 4.1:-39500851 | MS.gene050129:CDS |
AAGTTCGTGATGATCAATGG+TGG | 0.634592 | 4.1:-39501887 | MS.gene050129:CDS |
ACTTTAGACACAGAAGCCCT+AGG | 0.635342 | 4.1:+39501414 | None:intergenic |
CCCAAGTGTTGTTATTACTG+TGG | 0.644602 | 4.1:-39501517 | MS.gene050129:CDS |
CTAAGAAGAAGAATCATCCA+AGG | 0.647301 | 4.1:-39500679 | MS.gene050129:CDS |
ACAGGGTAAATTCACTAACA+AGG | 0.650361 | 4.1:-39500834 | MS.gene050129:CDS |
GGCGTCCCTCAAGAGAATCG+TGG | 0.659434 | 4.1:-39503626 | MS.gene050129:CDS |
CCACAGTAATAACAACACTT+GGG | 0.662921 | 4.1:+39501517 | None:intergenic |
AGAAGAAGAATCATCCAAGG+TGG | 0.677908 | 4.1:-39500676 | MS.gene050129:CDS |
TTCCGGGGTGTCGAACTCTG+AGG | 0.689190 | 4.1:-39501595 | MS.gene050129:CDS |
CCAAAAGACAAAGAAACATG+GGG | 0.703653 | 4.1:-39501972 | MS.gene050129:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | ATTTTTAAAAAAAAAAAAAT+TGG | - | chr4.1:39501067-39501086 | MS.gene050129:intron | 0.0% |
!! | ATAATAAAATAAAATTATGG+GGG | + | chr4.1:39501132-39501151 | None:intergenic | 10.0% |
!! | GGTATAATAAAATAAAATTA+TGG | + | chr4.1:39501135-39501154 | None:intergenic | 10.0% |
!! | TAAAATAAAGAAAAATGTTA+AGG | + | chr4.1:39501570-39501589 | None:intergenic | 10.0% |
!!! | ATTTTAATATAGAAAATCTT+TGG | - | chr4.1:39501584-39501603 | MS.gene050129:CDS | 10.0% |
!! | CTAGATTAGATTATTAATAA+TGG | - | chr4.1:39502856-39502875 | MS.gene050129:intron | 15.0% |
!! | TATCATAATAAACTTTGAAT+AGG | - | chr4.1:39503130-39503149 | MS.gene050129:intron | 15.0% |
!! | TCATAAAATAAAATTGCATA+TGG | + | chr4.1:39501156-39501175 | None:intergenic | 15.0% |
!!! | TACATAAATGACATTTTTTT+TGG | + | chr4.1:39501206-39501225 | None:intergenic | 15.0% |
!!! | TTTATTCAATTTTCATATGA+AGG | - | chr4.1:39501839-39501858 | MS.gene050129:CDS | 15.0% |
!! | AAAAAATAGACTTTCTTACT+TGG | + | chr4.1:39502811-39502830 | None:intergenic | 20.0% |
!! | ACACATGTAAAAATTATTAC+TGG | + | chr4.1:39502031-39502050 | None:intergenic | 20.0% |
!! | AGGTTAAACTTTACTAAATA+TGG | + | chr4.1:39503208-39503227 | None:intergenic | 20.0% |
!! | ATTGATATGATGTATTTAAG+AGG | - | chr4.1:39503942-39503961 | MS.gene050129:CDS | 20.0% |
!! | TATTTAGTAAAGTTTAACCT+AGG | - | chr4.1:39503208-39503227 | MS.gene050129:CDS | 20.0% |
!! | TTAAACTAGTATGTTTGTAT+CGG | + | chr4.1:39501519-39501538 | None:intergenic | 20.0% |
!! | TTGATATGATGTATTTAAGA+GGG | - | chr4.1:39503943-39503962 | MS.gene050129:CDS | 20.0% |
!! | TTTCACTAAATTAAAGTAAG+TGG | + | chr4.1:39501617-39501636 | None:intergenic | 20.0% |
!!! | AAAGTATAAGAATTCTGTTT+TGG | - | chr4.1:39500734-39500753 | MS.gene050129:CDS | 20.0% |
!!! | AACATTTTTATTGTACTACA+TGG | - | chr4.1:39500038-39500057 | MS.gene050129:CDS | 20.0% |
!!! | AAGTATAAGAATTCTGTTTT+GGG | - | chr4.1:39500735-39500754 | MS.gene050129:CDS | 20.0% |
!!! | ACATTTTTATTGTACTACAT+GGG | - | chr4.1:39500039-39500058 | MS.gene050129:CDS | 20.0% |
!!! | ATTTTACTTTTCCAAGTTAT+AGG | - | chr4.1:39500793-39500812 | MS.gene050129:CDS | 20.0% |
!!! | CCATTAGATTATGTTTTAAT+CGG | + | chr4.1:39503063-39503082 | None:intergenic | 20.0% |
!!! | GTAATAATTTTTACATGTGT+TGG | - | chr4.1:39502031-39502050 | MS.gene050129:intron | 20.0% |
!!! | TAATAGTTTGAAATTGTTTG+CGG | + | chr4.1:39501961-39501980 | None:intergenic | 20.0% |
!!! | TTCAACAAAACATTGATTTT+CGG | + | chr4.1:39500417-39500436 | None:intergenic | 20.0% |
!!! | TTTTAAATACCAGTTAAATC+AGG | - | chr4.1:39502891-39502910 | MS.gene050129:intron | 20.0% |
! | AAATAAGTCATTGTTTGACT+TGG | + | chr4.1:39501682-39501701 | None:intergenic | 25.0% |
! | AAATTTAAGTCTAAAGAAGC+TGG | - | chr4.1:39500816-39500835 | MS.gene050129:CDS | 25.0% |
! | AAGTCAAACAATGACTTATT+TGG | - | chr4.1:39501681-39501700 | MS.gene050129:CDS | 25.0% |
! | AATGAACATGAAATCCAAAT+GGG | - | chr4.1:39500365-39500384 | MS.gene050129:CDS | 25.0% |
! | AATTTCCAAAACAAAACCAT+TGG | - | chr4.1:39500321-39500340 | MS.gene050129:CDS | 25.0% |
! | ATAGACAATATTACACATGT+TGG | + | chr4.1:39501407-39501426 | None:intergenic | 25.0% |
! | ATTGGTTATTGTTATCTTCT+TGG | + | chr4.1:39500182-39500201 | None:intergenic | 25.0% |
! | CCGATTAAAACATAATCTAA+TGG | - | chr4.1:39503060-39503079 | MS.gene050129:intron | 25.0% |
! | GAAAAATTTAGATCAACAGT+TGG | - | chr4.1:39502415-39502434 | MS.gene050129:intron | 25.0% |
! | GACTTAAATTTCCTATAACT+TGG | + | chr4.1:39500807-39500826 | None:intergenic | 25.0% |
! | TAATGAACATGAAATCCAAA+TGG | - | chr4.1:39500364-39500383 | MS.gene050129:CDS | 25.0% |
! | TAATTCAAATGGTACTACAT+TGG | - | chr4.1:39502720-39502739 | MS.gene050129:intron | 25.0% |
! | TATTAGTGCTAAAGATAATG+TGG | - | chr4.1:39504037-39504056 | MS.gene050129:CDS | 25.0% |
! | TGTGGTTAAGCATAATAAAA+TGG | - | chr4.1:39504055-39504074 | MS.gene050129:CDS | 25.0% |
! | TTTATGTTTACATGAACATG+AGG | - | chr4.1:39503835-39503854 | MS.gene050129:CDS | 25.0% |
!! | AATATTGCCATTTAGACAAA+AGG | - | chr4.1:39500770-39500789 | MS.gene050129:CDS | 25.0% |
!! | GTAAAATCCTTTTGTCTAAA+TGG | + | chr4.1:39500780-39500799 | None:intergenic | 25.0% |
!! | TTGGTTCTTAAATCAATTGA+AGG | + | chr4.1:39500066-39500085 | None:intergenic | 25.0% |
!!! | AAAGTGTTTTTCTCTTGAAA+TGG | + | chr4.1:39500440-39500459 | None:intergenic | 25.0% |
!!! | AAATGAACCTACTAGTTTTA+TGG | + | chr4.1:39503442-39503461 | None:intergenic | 25.0% |
!!! | AAGTTTTTCAACTAACCATA+TGG | - | chr4.1:39504001-39504020 | MS.gene050129:CDS | 25.0% |
!!! | AGTTACGATTTTAAGTACTA+TGG | - | chr4.1:39500600-39500619 | MS.gene050129:CDS | 25.0% |
!!! | CGTTTTAAGATCTTTGATTT+GGG | - | chr4.1:39502535-39502554 | MS.gene050129:intron | 25.0% |
!!! | GATCTAAATTTTTCAAGAAG+TGG | + | chr4.1:39502409-39502428 | None:intergenic | 25.0% |
!!! | GCATAATAAAATGGATTTTG+AGG | - | chr4.1:39504064-39504083 | MS.gene050129:CDS | 25.0% |
!!! | TCGTTTTAAGATCTTTGATT+TGG | - | chr4.1:39502534-39502553 | MS.gene050129:intron | 25.0% |
!!! | TTGATTTTCTTTCAAGTTCT+TGG | - | chr4.1:39500892-39500911 | MS.gene050129:intron | 25.0% |
AAAACTCTCTCCAATGTTTA+GGG | + | chr4.1:39503818-39503837 | None:intergenic | 30.0% | |
AAAGAAAATGTTGGAGATCT+TGG | - | chr4.1:39500692-39500711 | MS.gene050129:CDS | 30.0% | |
AAATCCAAATGGGATTTGAA+AGG | - | chr4.1:39500375-39500394 | MS.gene050129:CDS | 30.0% | |
AACTACAAGGTAATTGATGA+AGG | + | chr4.1:39503779-39503798 | None:intergenic | 30.0% | |
AACTAGTAGGTTCATTTGAA+TGG | - | chr4.1:39503445-39503464 | MS.gene050129:CDS | 30.0% | |
AATTCCAATCACTTTCAACA+TGG | - | chr4.1:39503395-39503414 | MS.gene050129:CDS | 30.0% | |
AATTCTTGAGAAATCTGGTT+TGG | + | chr4.1:39500085-39500104 | None:intergenic | 30.0% | |
AATTTCATCTCCTAGATAGT+AGG | + | chr4.1:39503379-39503398 | None:intergenic | 30.0% | |
ATCCAAAAGACAAAGAAACA+TGG | - | chr4.1:39502191-39502210 | MS.gene050129:intron | 30.0% | |
ATTCCGAAATCAAGAACAAA+TGG | - | chr4.1:39503891-39503910 | MS.gene050129:CDS | 30.0% | |
CAACCATTTGTTCTTGATTT+CGG | + | chr4.1:39503897-39503916 | None:intergenic | 30.0% | |
CACTATTGATAAAATTGTGC+AGG | - | chr4.1:39500869-39500888 | MS.gene050129:CDS | 30.0% | |
CTAAAATCATCCTTCAACAA+TGG | + | chr4.1:39504092-39504111 | None:intergenic | 30.0% | |
GATCAAACCAATTGACAAAT+TGG | + | chr4.1:39502923-39502942 | None:intergenic | 30.0% | |
GCTTCAGAAACTAATTCAAA+TGG | - | chr4.1:39502709-39502728 | MS.gene050129:intron | 30.0% | |
GTTTGTTTGATTGCAAATAG+AGG | + | chr4.1:39501882-39501901 | None:intergenic | 30.0% | |
TAAAACTCTCTCCAATGTTT+AGG | + | chr4.1:39503819-39503838 | None:intergenic | 30.0% | |
TCAATAGTGATATCATAAGC+AGG | + | chr4.1:39500858-39500877 | None:intergenic | 30.0% | |
TCATCAATTACCTTGTAGTT+GGG | - | chr4.1:39503779-39503798 | MS.gene050129:CDS | 30.0% | |
TCCAAAAGACAAAGAAACAT+GGG | - | chr4.1:39502192-39502211 | MS.gene050129:intron | 30.0% | |
TGATTGAAAAGGTTCAAAGA+TGG | + | chr4.1:39504158-39504177 | None:intergenic | 30.0% | |
TGTTAGAGATCTTAGTGATA+TGG | + | chr4.1:39503178-39503197 | None:intergenic | 30.0% | |
TTAGTGATATGGTCAAGATA+GGG | + | chr4.1:39503167-39503186 | None:intergenic | 30.0% | |
TTCATCAATTACCTTGTAGT+TGG | - | chr4.1:39503778-39503797 | MS.gene050129:CDS | 30.0% | |
TTGACAACTTCAACAATTCT+TGG | + | chr4.1:39503696-39503715 | None:intergenic | 30.0% | |
TTGATCCATAGGTAGTAATA+AGG | + | chr4.1:39503600-39503619 | None:intergenic | 30.0% | |
TTGCAGATTGGAATAAAATG+AGG | - | chr4.1:39503283-39503302 | MS.gene050129:CDS | 30.0% | |
! | AACAATTCTTGGTGTGTATA+GGG | + | chr4.1:39503685-39503704 | None:intergenic | 30.0% |
! | ATCTTTGAACCTTTTCAATC+AGG | - | chr4.1:39504157-39504176 | MS.gene050129:CDS | 30.0% |
! | CATTGTTGAAGGATGATTTT+AGG | - | chr4.1:39504090-39504109 | MS.gene050129:CDS | 30.0% |
! | CTTCAAAAGTATAGAAATGC+AGG | - | chr4.1:39502148-39502167 | MS.gene050129:intron | 30.0% |
! | TACAATTTTCTCTTGCAGAT+TGG | - | chr4.1:39503271-39503290 | MS.gene050129:CDS | 30.0% |
! | TAGTGAATTTACCCTGTTTT+GGG | + | chr4.1:39503328-39503347 | None:intergenic | 30.0% |
! | TTAGTGAATTTACCCTGTTT+TGG | + | chr4.1:39503329-39503348 | None:intergenic | 30.0% |
!! | ACGATTTTAAGTACTATGGA+AGG | - | chr4.1:39500604-39500623 | MS.gene050129:CDS | 30.0% |
!! | ATTTTCGGTTTGTTTGGATT+TGG | + | chr4.1:39500402-39500421 | None:intergenic | 30.0% |
!! | CTTTGGAATTCTGATTTCAA+AGG | + | chr4.1:39501764-39501783 | None:intergenic | 30.0% |
!! | GATTTTAGGAATTTTTTGCC+TGG | - | chr4.1:39504104-39504123 | MS.gene050129:CDS | 30.0% |
!! | TACTGTTGTTTCTGATACAT+AGG | + | chr4.1:39502239-39502258 | None:intergenic | 30.0% |
!!! | AAGAGTGCATCAATTTTTTG+TGG | + | chr4.1:39502349-39502368 | None:intergenic | 30.0% |
!!! | AATTCTGTTTTGGGAAGTAT+TGG | - | chr4.1:39500744-39500763 | MS.gene050129:CDS | 30.0% |
!!! | ACATTGATTTTCGGTTTGTT+TGG | + | chr4.1:39500408-39500427 | None:intergenic | 30.0% |
!!! | AGAGTGCATCAATTTTTTGT+GGG | + | chr4.1:39502348-39502367 | None:intergenic | 30.0% |
!!! | ATTCTGTTTTGGGAAGTATT+GGG | - | chr4.1:39500745-39500764 | MS.gene050129:CDS | 30.0% |
AAAACCAAGCCTCAAAAATC+AGG | - | chr4.1:39499958-39499977 | MS.gene050129:CDS | 35.0% | |
AAAGCATACATTGTTGTCTC+TGG | - | chr4.1:39502442-39502461 | MS.gene050129:intron | 35.0% | |
AACAAGAGATGGAATTGATG+TGG | + | chr4.1:39500211-39500230 | None:intergenic | 35.0% | |
AACTATTGTGCATTACTCCT+AGG | + | chr4.1:39503228-39503247 | None:intergenic | 35.0% | |
AATTCTGTCGCATTCCATTT+CGG | + | chr4.1:39503726-39503745 | None:intergenic | 35.0% | |
ACAGGGTAAATTCACTAACA+AGG | - | chr4.1:39503331-39503350 | MS.gene050129:CDS | 35.0% | |
AGACAATATGATTGTACCTG+AGG | + | chr4.1:39500992-39501011 | None:intergenic | 35.0% | |
ATCTGGCTACATAACACAAT+GGG | - | chr4.1:39502312-39502331 | MS.gene050129:intron | 35.0% | |
ATGTTGAATGACTATGTTGC+TGG | - | chr4.1:39499928-39499947 | MS.gene050129:CDS | 35.0% | |
CAACATCATAACCCAAAACA+GGG | - | chr4.1:39503314-39503333 | MS.gene050129:CDS | 35.0% | |
CAAGGTAATTGATGAAGGTA+AGG | + | chr4.1:39503774-39503793 | None:intergenic | 35.0% | |
CATCAATTACCTTGTAGTTG+GGG | - | chr4.1:39503780-39503799 | MS.gene050129:CDS | 35.0% | |
CCAAAAGACAAAGAAACATG+GGG | - | chr4.1:39502193-39502212 | MS.gene050129:intron | 35.0% | |
CCAAACTTGATGAAAAGGTA+GGG | + | chr4.1:39500493-39500512 | None:intergenic | 35.0% | |
CCACAGTAATAACAACACTT+GGG | + | chr4.1:39502651-39502670 | None:intergenic | 35.0% | |
CGAAATCAAGAACAAATGGT+TGG | - | chr4.1:39503895-39503914 | MS.gene050129:CDS | 35.0% | |
CGGTTTAATCTGTTTAACCA+TGG | + | chr4.1:39503043-39503062 | None:intergenic | 35.0% | |
CTAAGAAGAAGAATCATCCA+AGG | - | chr4.1:39503486-39503505 | MS.gene050129:CDS | 35.0% | |
CTATCCATGTTGAAAGTGAT+TGG | + | chr4.1:39503402-39503421 | None:intergenic | 35.0% | |
CTTAGTGATATGGTCAAGAT+AGG | + | chr4.1:39503168-39503187 | None:intergenic | 35.0% | |
CTTGATTTCGGAATTTGAAC+CGG | + | chr4.1:39503885-39503904 | None:intergenic | 35.0% | |
GAACAAGCCAATTTGTCAAT+TGG | - | chr4.1:39502913-39502932 | MS.gene050129:intron | 35.0% | |
GAAGCAACCATAAAACTAGT+AGG | - | chr4.1:39503432-39503451 | MS.gene050129:CDS | 35.0% | |
GAATACACTGCTTGTATAAC+TGG | + | chr4.1:39502598-39502617 | None:intergenic | 35.0% | |
GAATTGATGTGGCTTGAAAT+TGG | + | chr4.1:39500200-39500219 | None:intergenic | 35.0% | |
GACACTAGAGAAAAAGTCTT+TGG | + | chr4.1:39501781-39501800 | None:intergenic | 35.0% | |
GATACCTGGAAAGAAAATGT+TGG | - | chr4.1:39500683-39500702 | MS.gene050129:CDS | 35.0% | |
GTACTATGGAAGGTTTCAAA+TGG | - | chr4.1:39500614-39500633 | MS.gene050129:CDS | 35.0% | |
TAGTGATATGGTCAAGATAG+GGG | + | chr4.1:39503166-39503185 | None:intergenic | 35.0% | |
TCAACATCATAACCCAAAAC+AGG | - | chr4.1:39503313-39503332 | MS.gene050129:CDS | 35.0% | |
TCATTCTCACAAACAAGAGA+TGG | + | chr4.1:39500222-39500241 | None:intergenic | 35.0% | |
TCCACAGTAATAACAACACT+TGG | + | chr4.1:39502652-39502671 | None:intergenic | 35.0% | |
TCTCAAGAATTGCACAACAA+TGG | - | chr4.1:39500094-39500113 | MS.gene050129:CDS | 35.0% | |
TCTCACCTTATTACTACCTA+TGG | - | chr4.1:39503592-39503611 | MS.gene050129:CDS | 35.0% | |
TGAGTGCATATTTGATCCAT+AGG | + | chr4.1:39503611-39503630 | None:intergenic | 35.0% | |
TGGAAAGCTATAACGATTCA+CGG | - | chr4.1:39500559-39500578 | MS.gene050129:CDS | 35.0% | |
TGTGCAATTCTTGAGAAATC+TGG | + | chr4.1:39500090-39500109 | None:intergenic | 35.0% | |
TTGATTTCGGAATTTGAACC+GGG | + | chr4.1:39503884-39503903 | None:intergenic | 35.0% | |
TTGTCAAAGAAAGACCGAAA+TGG | - | chr4.1:39503709-39503728 | MS.gene050129:CDS | 35.0% | |
! | AAAGAGAGAGCTTTATGAAG+AGG | - | chr4.1:39500293-39500312 | MS.gene050129:CDS | 35.0% |
! | ACAAGTGTTTCTGAACCTAA+TGG | + | chr4.1:39501724-39501743 | None:intergenic | 35.0% |
! | ATCTCCAACATTTTCTTTCC+AGG | + | chr4.1:39500690-39500709 | None:intergenic | 35.0% |
! | CAACAATTCTTGGTGTGTAT+AGG | + | chr4.1:39503686-39503705 | None:intergenic | 35.0% |
! | CAGTGTTTTTCCCTAAACAT+TGG | - | chr4.1:39503805-39503824 | MS.gene050129:CDS | 35.0% |
! | CATGTTCATTAGCTCTTGAA+GGG | + | chr4.1:39500355-39500374 | None:intergenic | 35.0% |
! | CCTACCTTTTCATCAAGTTT+GGG | - | chr4.1:39500491-39500510 | MS.gene050129:CDS | 35.0% |
! | CTTCTGTGTCTAAAGTTCTT+TGG | - | chr4.1:39502758-39502777 | MS.gene050129:intron | 35.0% |
! | GGTTAGTTGAAAAACTTGCT+TGG | + | chr4.1:39503998-39504017 | None:intergenic | 35.0% |
! | GTTGAAAAACTTGCTTGGTT+TGG | + | chr4.1:39503993-39504012 | None:intergenic | 35.0% |
! | TCATGTTCATTAGCTCTTGA+AGG | + | chr4.1:39500356-39500375 | None:intergenic | 35.0% |
! | TCTTTGTCTTTTGGATCTAC+TGG | + | chr4.1:39502187-39502206 | None:intergenic | 35.0% |
! | TGTGTCTAAAGTTCTTTGGA+TGG | - | chr4.1:39502762-39502781 | MS.gene050129:intron | 35.0% |
! | TTCAAGTTCGTGATGATCAA+TGG | - | chr4.1:39502275-39502294 | MS.gene050129:intron | 35.0% |
! | TTTGTCATCTAGTTCAACCA+TGG | - | chr4.1:39503023-39503042 | MS.gene050129:intron | 35.0% |
!! | AAGATCTTTGATTTGGGTGT+TGG | - | chr4.1:39502541-39502560 | MS.gene050129:intron | 35.0% |
!! | AAGTCATTGTTTGACTTGGA+TGG | + | chr4.1:39501678-39501697 | None:intergenic | 35.0% |
!! | AATCAGGCTGTTTCTCTTAA+GGG | - | chr4.1:39504173-39504192 | MS.gene050129:CDS | 35.0% |
!! | AGCAGTGTATTCTAGTTTGA+AGG | - | chr4.1:39502606-39502625 | MS.gene050129:intron | 35.0% |
!! | CTTAGTGTTTTTGATCCATG+TGG | + | chr4.1:39503471-39503490 | None:intergenic | 35.0% |
!! | CTTGCTTGGTTTGGAAAATT+TGG | + | chr4.1:39503984-39504003 | None:intergenic | 35.0% |
!! | GAGTTTTAGTCGAAATACGA+CGG | - | chr4.1:39499879-39499898 | MS.gene050129:CDS | 35.0% |
!! | GCAGTGTATTCTAGTTTGAA+GGG | - | chr4.1:39502607-39502626 | MS.gene050129:intron | 35.0% |
!! | GTTGATGATGATATGATACC+TGG | - | chr4.1:39500669-39500688 | MS.gene050129:CDS | 35.0% |
!! | TGTGAGAAAAGCTTTGAAGA+TGG | - | chr4.1:39502687-39502706 | MS.gene050129:intron | 35.0% |
!! | TTTGTTGTGCCTGATTTTTG+AGG | + | chr4.1:39499970-39499989 | None:intergenic | 35.0% |
!!! | CACTTCCAATGGTTTTGTTT+TGG | + | chr4.1:39500329-39500348 | None:intergenic | 35.0% |
!!! | TACATTGGTTCTTTTGCCTA+GGG | - | chr4.1:39502735-39502754 | MS.gene050129:intron | 35.0% |
!!! | TGATTTTTGAGGCTTGGTTT+TGG | + | chr4.1:39499959-39499978 | None:intergenic | 35.0% |
AAATTATGGGGGTTCATGCA+TGG | + | chr4.1:39501121-39501140 | None:intergenic | 40.0% | |
AAGTTCGTGATGATCAATGG+TGG | - | chr4.1:39502278-39502297 | MS.gene050129:intron | 40.0% | |
AAGTTTGGGTGCTTTCTTTC+GGG | - | chr4.1:39500505-39500524 | MS.gene050129:CDS | 40.0% | |
AATCCGATCGAATGTGTTTC+TGG | + | chr4.1:39502091-39502110 | None:intergenic | 40.0% | |
ACACCAGAAACACATTCGAT+CGG | - | chr4.1:39502085-39502104 | MS.gene050129:intron | 40.0% | |
AGAAGAAGAATCATCCAAGG+TGG | - | chr4.1:39503489-39503508 | MS.gene050129:CDS | 40.0% | |
AGCACCCAAACTTGATGAAA+AGG | + | chr4.1:39500498-39500517 | None:intergenic | 40.0% | |
ATCTCCTAGATAGTAGGCAT+TGG | + | chr4.1:39503373-39503392 | None:intergenic | 40.0% | |
ATGATCACACCACACATTGT+AGG | - | chr4.1:39500126-39500145 | MS.gene050129:CDS | 40.0% | |
CAAATCTTCACCAGTTGAGA+AGG | + | chr4.1:39500967-39500986 | None:intergenic | 40.0% | |
CAAGTTTGGGTGCTTTCTTT+CGG | - | chr4.1:39500504-39500523 | MS.gene050129:CDS | 40.0% | |
CATCTGGCTACATAACACAA+TGG | - | chr4.1:39502311-39502330 | MS.gene050129:intron | 40.0% | |
CCAAAGTTGTCATCTGAAGA+TGG | + | chr4.1:39503546-39503565 | None:intergenic | 40.0% | |
CCATCTTCAGATGACAACTT+TGG | - | chr4.1:39503543-39503562 | MS.gene050129:CDS | 40.0% | |
CCCAAACTTGATGAAAAGGT+AGG | + | chr4.1:39500494-39500513 | None:intergenic | 40.0% | |
CGTTCTTTGCAAACCAAAAG+AGG | + | chr4.1:39502514-39502533 | None:intergenic | 40.0% | |
GAGAAACAGCCTGATTGAAA+AGG | + | chr4.1:39504169-39504188 | None:intergenic | 40.0% | |
GATGGTAATCTTGAAGCTGA+AGG | + | chr4.1:39504140-39504159 | None:intergenic | 40.0% | |
GTCATTCAACATTCCATCCA+AGG | + | chr4.1:39499920-39499939 | None:intergenic | 40.0% | |
GTGATATCATAAGCAGGATC+AGG | + | chr4.1:39500852-39500871 | None:intergenic | 40.0% | |
TAAGAGCAGTGAGTGAAAGT+TGG | - | chr4.1:39503517-39503536 | MS.gene050129:CDS | 40.0% | |
TCAACTAACCATATGGAACC+AGG | - | chr4.1:39504008-39504027 | MS.gene050129:CDS | 40.0% | |
TCACCAGTTGAGAAGGTAAA+AGG | + | chr4.1:39500960-39500979 | None:intergenic | 40.0% | |
TGAACCAACCTTGGTTTAAC+CGG | + | chr4.1:39502984-39503003 | None:intergenic | 40.0% | |
TGATCACACCACACATTGTA+GGG | - | chr4.1:39500127-39500146 | MS.gene050129:CDS | 40.0% | |
TGATGAAGGTAAGGTGTGTT+CGG | + | chr4.1:39503765-39503784 | None:intergenic | 40.0% | |
TGGACCTTTCAAATCCCATT+TGG | + | chr4.1:39500382-39500401 | None:intergenic | 40.0% | |
TGTGAATGCAGTATCTTGTC+CGG | + | chr4.1:39502000-39502019 | None:intergenic | 40.0% | |
TTAGCACTAATATGTGCACC+TGG | + | chr4.1:39504029-39504048 | None:intergenic | 40.0% | |
TTTGCAGACAGAAGCTGATT+TGG | - | chr4.1:39500638-39500657 | MS.gene050129:CDS | 40.0% | |
! | ACTCCTTTTACCTTCTCAAC+TGG | - | chr4.1:39500954-39500973 | MS.gene050129:intron | 40.0% |
! | CCCAAGTGTTGTTATTACTG+TGG | - | chr4.1:39502648-39502667 | MS.gene050129:intron | 40.0% |
! | CCCCATGTTTCTTTGTCTTT+TGG | + | chr4.1:39502196-39502215 | None:intergenic | 40.0% |
! | CCCTACCTTTTCATCAAGTT+TGG | - | chr4.1:39500490-39500509 | MS.gene050129:CDS | 40.0% |
! | GTTGCTGTTGATCATCATAC+TGG | - | chr4.1:39504260-39504279 | MS.gene050129:CDS | 40.0% |
! | TAAACCAAGGTTGGTTCAAC+TGG | - | chr4.1:39502986-39503005 | MS.gene050129:intron | 40.0% |
! | TTACATGTGTTGGTGCACTA+GGG | - | chr4.1:39502041-39502060 | MS.gene050129:intron | 40.0% |
! | TTGGTTTGATCCTGAGTACT+CGG | - | chr4.1:39502932-39502951 | MS.gene050129:intron | 40.0% |
! | TTTACATGTGTTGGTGCACT+AGG | - | chr4.1:39502040-39502059 | MS.gene050129:intron | 40.0% |
!! | ATCGAATGTGTTTCTGGTGT+CGG | + | chr4.1:39502085-39502104 | None:intergenic | 40.0% |
!! | CAATCAGGCTGTTTCTCTTA+AGG | - | chr4.1:39504172-39504191 | MS.gene050129:CDS | 40.0% |
!! | TGGCTTGTTCCTGATTTAAC+TGG | + | chr4.1:39502903-39502922 | None:intergenic | 40.0% |
!! | TTGGGTGTTGGTTCAATTTC+CGG | - | chr4.1:39502553-39502572 | MS.gene050129:intron | 40.0% |
!!! | CTACATTGGTTCTTTTGCCT+AGG | - | chr4.1:39502734-39502753 | MS.gene050129:intron | 40.0% |
!!! | TTTTGAGGTGCCATTGTTGA+AGG | - | chr4.1:39504079-39504098 | MS.gene050129:CDS | 40.0% |
ACTTTAGACACAGAAGCCCT+AGG | + | chr4.1:39502754-39502773 | None:intergenic | 45.0% | |
AGAAGTGGAGATTCCTTGGA+TGG | - | chr4.1:39499904-39499923 | MS.gene050129:CDS | 45.0% | |
AGATCTTGGCACATGTAGCT+GGG | - | chr4.1:39500706-39500725 | MS.gene050129:CDS | 45.0% | |
AGCTTTCCACGATTCTCTTG+AGG | + | chr4.1:39500548-39500567 | None:intergenic | 45.0% | |
AGGTTGAACCGGTTAAACCA+AGG | - | chr4.1:39502973-39502992 | MS.gene050129:intron | 45.0% | |
CAAATGGTTGGCAAGCTTCA+TGG | - | chr4.1:39503907-39503926 | MS.gene050129:CDS | 45.0% | |
CAATGTGTGGTGTGATCATG+AGG | + | chr4.1:39500125-39500144 | None:intergenic | 45.0% | |
CAGAATCTTGAGCAGTGATG+AGG | + | chr4.1:39504290-39504309 | None:intergenic | 45.0% | |
CTCACCAATGCCTACTATCT+AGG | - | chr4.1:39503366-39503385 | MS.gene050129:CDS | 45.0% | |
CTTAAGGGACTTAAAGCTGC+TGG | - | chr4.1:39504188-39504207 | MS.gene050129:CDS | 45.0% | |
GAAACCAGTTGAACCAACCT+TGG | + | chr4.1:39502993-39503012 | None:intergenic | 45.0% | |
GAGAGACTTGAGGGTCATAA+TGG | + | chr4.1:39503641-39503660 | None:intergenic | 45.0% | |
GCATACATTGTTGTCTCTGG+TGG | - | chr4.1:39502445-39502464 | MS.gene050129:intron | 45.0% | |
GCTTTCCACGATTCTCTTGA+GGG | + | chr4.1:39500547-39500566 | None:intergenic | 45.0% | |
GGTTCATTTGAATGGCCACA+TGG | - | chr4.1:39503453-39503472 | MS.gene050129:CDS | 45.0% | |
GTGACTGAACAAGGTTGAAC+CGG | - | chr4.1:39502962-39502981 | MS.gene050129:intron | 45.0% | |
GTGCTCAACTAGTTGCCATT+AGG | - | chr4.1:39501706-39501725 | MS.gene050129:CDS | 45.0% | |
GTTCAACCTTGTTCAGTCAC+CGG | + | chr4.1:39502962-39502981 | None:intergenic | 45.0% | |
TATGTGCACCTGGTTCCATA+TGG | + | chr4.1:39504019-39504038 | None:intergenic | 45.0% | |
TGAACCGGTTAAACCAAGGT+TGG | - | chr4.1:39502977-39502996 | MS.gene050129:intron | 45.0% | |
TGAGAGAAGATGCAGCTTCT+TGG | + | chr4.1:39500158-39500177 | None:intergenic | 45.0% | |
TTAAACCCTGTCACAGACAC+CGG | - | chr4.1:39501978-39501997 | MS.gene050129:CDS | 45.0% | |
TTGAAGGGTCTCACTTCCAA+TGG | + | chr4.1:39500340-39500359 | None:intergenic | 45.0% | |
! | AAAGCTGCTGGTGCTAAGTT+GGG | - | chr4.1:39504200-39504219 | MS.gene050129:CDS | 45.0% |
! | AGCTCTCAAATGGCCTCTTT+TGG | - | chr4.1:39502498-39502517 | MS.gene050129:intron | 45.0% |
! | TAAAGCTGCTGGTGCTAAGT+TGG | - | chr4.1:39504199-39504218 | MS.gene050129:CDS | 45.0% |
! | TCTTGGTGTGTATAGGGAGA+TGG | + | chr4.1:39503679-39503698 | None:intergenic | 45.0% |
! | TGGTAATGCCCTACAATGTG+TGG | + | chr4.1:39500138-39500157 | None:intergenic | 45.0% |
!! | TGGGTGTTGGTTCAATTTCC+GGG | - | chr4.1:39502554-39502573 | MS.gene050129:intron | 45.0% |
!! | TGGTGGAAAGCACTTTCATC+TGG | - | chr4.1:39502295-39502314 | MS.gene050129:intron | 45.0% |
!!! | TGTGCCTGATTTTTGAGGCT+TGG | + | chr4.1:39499965-39499984 | None:intergenic | 45.0% |
!! | GTATAATAAAATAAAATTAT+GGG | + | chr4.1:39501134-39501153 | None:intergenic | 5.0% |
!! | TATAATAAAATAAAATTATG+GGG | + | chr4.1:39501133-39501152 | None:intergenic | 5.0% |
AACACTGCTCCCCAACTACA+AGG | + | chr4.1:39503792-39503811 | None:intergenic | 50.0% | |
AAGCTGCAGCAGCTCTCAAA+TGG | - | chr4.1:39502488-39502507 | MS.gene050129:intron | 50.0% | |
AGGGAGATGGAAGAGAGTTC+TGG | + | chr4.1:39503666-39503685 | None:intergenic | 50.0% | |
CTGCTCTTATGAGTCCACCT+TGG | + | chr4.1:39503506-39503525 | None:intergenic | 50.0% | |
CTGGTGAAGATTTGCACCTC+AGG | - | chr4.1:39500973-39500992 | MS.gene050129:intron | 50.0% | |
GAAGGTAAGGTGTGTTCGGA+TGG | + | chr4.1:39503761-39503780 | None:intergenic | 50.0% | |
GAGATCTTGGCACATGTAGC+TGG | - | chr4.1:39500705-39500724 | MS.gene050129:CDS | 50.0% | |
GGGAGATGGAAGAGAGTTCT+GGG | + | chr4.1:39503665-39503684 | None:intergenic | 50.0% | |
TTCTTTCGGGAGTCCAAACG+AGG | - | chr4.1:39500518-39500537 | MS.gene050129:CDS | 50.0% | |
!! | AGTTCTGGGAGAGAGACTTG+AGG | + | chr4.1:39503651-39503670 | None:intergenic | 50.0% |
!! | GCTGAAGGCATCTTCATTCC+AGG | + | chr4.1:39504125-39504144 | None:intergenic | 50.0% |
!! | GGGTGTTGGTTCAATTTCCG+GGG | - | chr4.1:39502555-39502574 | MS.gene050129:intron | 50.0% |
!! | GTTCTGGGAGAGAGACTTGA+GGG | + | chr4.1:39503650-39503669 | None:intergenic | 50.0% |
ATCCTGAGTACTCGGCAGTC+CGG | - | chr4.1:39502940-39502959 | MS.gene050129:intron | 55.0% | |
CGAAATACGACGGCGAGAAG+TGG | - | chr4.1:39499889-39499908 | MS.gene050129:CDS | 55.0% | |
CTTGTCCGGTGTCTGTGACA+GGG | + | chr4.1:39501986-39502005 | None:intergenic | 55.0% | |
GGCGAGAAGTGGAGATTCCT+TGG | - | chr4.1:39499900-39499919 | MS.gene050129:CDS | 55.0% | |
TCTTGTCCGGTGTCTGTGAC+AGG | + | chr4.1:39501987-39502006 | None:intergenic | 55.0% | |
! | GCTGCTGCAGCTTGTTCACA+AGG | + | chr4.1:39502481-39502500 | None:intergenic | 55.0% |
! | TGCTGGTGCTAAGTTGGGAC+AGG | - | chr4.1:39504205-39504224 | MS.gene050129:CDS | 55.0% |
CTCTTGAGGGACGCCTCGTT+TGG | + | chr4.1:39500534-39500553 | None:intergenic | 60.0% | |
GGCAGTCCGGTGACTGAACA+AGG | - | chr4.1:39502953-39502972 | MS.gene050129:intron | 60.0% | |
GGCGTCCCTCAAGAGAATCG+TGG | - | chr4.1:39500539-39500558 | MS.gene050129:CDS | 60.0% | |
TGCCTCAGAGTTCGACACCC+CGG | + | chr4.1:39502575-39502594 | None:intergenic | 60.0% | |
!! | TTCCGGGGTGTCGAACTCTG+AGG | - | chr4.1:39502570-39502589 | MS.gene050129:intron | 60.0% |
CACCGGACTGCCGAGTACTC+AGG | + | chr4.1:39502945-39502964 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.1 | gene | 39499877 | 39504310 | 39499877 | ID=MS.gene050129 |
chr4.1 | mRNA | 39499877 | 39504310 | 39499877 | ID=MS.gene050129.t1;Parent=MS.gene050129 |
chr4.1 | exon | 39503193 | 39504310 | 39503193 | ID=MS.gene050129.t1.exon1;Parent=MS.gene050129.t1 |
chr4.1 | CDS | 39503193 | 39504310 | 39503193 | ID=cds.MS.gene050129.t1;Parent=MS.gene050129.t1 |
chr4.1 | exon | 39501376 | 39502046 | 39501376 | ID=MS.gene050129.t1.exon2;Parent=MS.gene050129.t1 |
chr4.1 | CDS | 39501376 | 39502046 | 39501376 | ID=cds.MS.gene050129.t1;Parent=MS.gene050129.t1 |
chr4.1 | exon | 39499877 | 39500898 | 39499877 | ID=MS.gene050129.t1.exon3;Parent=MS.gene050129.t1 |
chr4.1 | CDS | 39499877 | 39500898 | 39499877 | ID=cds.MS.gene050129.t1;Parent=MS.gene050129.t1 |
Gene Sequence |
Protein sequence |