Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64826.t1 | XP_024640934.1 | 96.9 | 227 | 7 | 0 | 1 | 227 | 1 | 227 | 2.90E-121 | 444.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64826.t1 | Q93VH2 | 38.5 | 182 | 105 | 4 | 41 | 217 | 137 | 316 | 4.7e-27 | 122.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64826.t1 | G7JYS6 | 96.9 | 227 | 7 | 0 | 1 | 227 | 100 | 326 | 2.1e-121 | 444.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049805 | MS.gene64826 | -0.801746 | 7.78E-49 | -1.69E-46 |
| MS.gene050670 | MS.gene64826 | -0.800347 | 1.50E-48 | -1.69E-46 |
| MS.gene05104 | MS.gene64826 | 0.801128 | 1.04E-48 | -1.69E-46 |
| MS.gene051167 | MS.gene64826 | 0.800075 | 1.71E-48 | -1.69E-46 |
| MS.gene051387 | MS.gene64826 | -0.820345 | 7.20E-53 | -1.69E-46 |
| MS.gene051666 | MS.gene64826 | -0.805613 | 1.23E-49 | -1.69E-46 |
| MS.gene051874 | MS.gene64826 | -0.826443 | 2.71E-54 | -1.69E-46 |
| MS.gene053813 | MS.gene64826 | -0.803823 | 2.90E-49 | -1.69E-46 |
| MS.gene054003 | MS.gene64826 | -0.830632 | 2.63E-55 | -1.69E-46 |
| MS.gene056422 | MS.gene64826 | -0.824551 | 7.59E-54 | -1.69E-46 |
| MS.gene056511 | MS.gene64826 | -0.803151 | 4.00E-49 | -1.69E-46 |
| MS.gene057146 | MS.gene64826 | -0.823576 | 1.29E-53 | -1.69E-46 |
| MS.gene057734 | MS.gene64826 | -0.801888 | 7.28E-49 | -1.69E-46 |
| MS.gene059368 | MS.gene64826 | -0.816572 | 5.16E-52 | -1.69E-46 |
| MS.gene059711 | MS.gene64826 | -0.807812 | 4.21E-50 | -1.69E-46 |
| MS.gene060818 | MS.gene64826 | -0.827591 | 1.44E-54 | -1.69E-46 |
| MS.gene060837 | MS.gene64826 | -0.818808 | 1.62E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64826.t1 | MTR_5g023110 | 96.916 | 227 | 7 | 0 | 1 | 227 | 100 | 326 | 2.18e-166 | 462 |
| MS.gene64826.t1 | MTR_3g112160 | 36.559 | 186 | 111 | 4 | 41 | 221 | 130 | 313 | 1.18e-32 | 120 |
| MS.gene64826.t1 | MTR_1g022485 | 34.946 | 186 | 114 | 4 | 41 | 221 | 167 | 350 | 1.09e-28 | 110 |
| MS.gene64826.t1 | MTR_3g112160 | 39.823 | 113 | 65 | 3 | 34 | 144 | 122 | 233 | 1.22e-16 | 76.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64826.t1 | AT5G66050 | 52.632 | 228 | 103 | 3 | 1 | 224 | 5 | 231 | 1.59e-81 | 244 |
| MS.gene64826.t1 | AT5G66050 | 52.632 | 228 | 103 | 3 | 1 | 224 | 99 | 325 | 2.57e-80 | 244 |
| MS.gene64826.t1 | AT5G66050 | 52.423 | 227 | 103 | 3 | 1 | 223 | 99 | 324 | 8.62e-80 | 242 |
| MS.gene64826.t1 | AT5G66050 | 51.675 | 209 | 96 | 3 | 1 | 205 | 99 | 306 | 1.75e-70 | 218 |
| MS.gene64826.t1 | AT1G19660 | 38.462 | 182 | 105 | 4 | 41 | 217 | 137 | 316 | 6.89e-34 | 124 |
| MS.gene64826.t1 | AT1G19660 | 38.462 | 182 | 105 | 4 | 41 | 217 | 137 | 316 | 6.89e-34 | 124 |
| MS.gene64826.t1 | AT1G75380 | 37.097 | 186 | 110 | 4 | 41 | 221 | 133 | 316 | 9.23e-33 | 121 |
| MS.gene64826.t1 | AT1G75380 | 37.097 | 186 | 110 | 4 | 41 | 221 | 133 | 316 | 9.23e-33 | 121 |
| MS.gene64826.t1 | AT1G75380 | 37.097 | 186 | 110 | 4 | 41 | 221 | 133 | 316 | 9.23e-33 | 121 |
| MS.gene64826.t1 | AT1G75380 | 37.097 | 186 | 110 | 4 | 41 | 221 | 133 | 316 | 9.23e-33 | 121 |
| MS.gene64826.t1 | AT1G19660 | 36.364 | 176 | 105 | 4 | 41 | 211 | 137 | 310 | 1.13e-28 | 110 |
Find 38 sgRNAs with CRISPR-Local
Find 117 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCATTTATTTGCAACATTAA+TGG | 0.190657 | 5.1:-13935811 | None:intergenic |
| ATTTCTTTACTTACATATAT+TGG | 0.231030 | 5.1:-13935988 | None:intergenic |
| TTTACTCTTTCAGGTGATAA+TGG | 0.294692 | 5.1:+13935600 | MS.gene64826:intron |
| AGTTCTTGAGCTACCGAATC+TGG | 0.317594 | 5.1:-13936237 | None:intergenic |
| CAACTAGGTTATTCACAAAC+TGG | 0.340562 | 5.1:-13934913 | None:intergenic |
| TACCGAATCTGGACCATCTA+TGG | 0.358074 | 5.1:-13936226 | None:intergenic |
| TATGTTCTGCCCATTGTTGT+AGG | 0.358421 | 5.1:+13934649 | MS.gene64826:CDS |
| GGGCAGAGTGCATAATAAAA+AGG | 0.382577 | 5.1:+13936047 | MS.gene64826:CDS |
| TTTATGATGTATTGCTTGAC+AGG | 0.409824 | 5.1:+13936073 | MS.gene64826:CDS |
| GGTTATTCACAAACTGGAAC+TGG | 0.445405 | 5.1:-13934907 | None:intergenic |
| GTTTGTTACAGTGCCATAGA+TGG | 0.457604 | 5.1:+13936213 | MS.gene64826:intron |
| TGCCATAGATGGTCCAGATT+CGG | 0.469346 | 5.1:+13936224 | MS.gene64826:CDS |
| TGCCATATTGCAGGATTGGC+CGG | 0.472759 | 5.1:+13934883 | MS.gene64826:intron |
| CATGATCTAGTCTTTCAACT+AGG | 0.480955 | 5.1:-13934928 | None:intergenic |
| TGCCAGATTGTACCTTAGCC+AGG | 0.486892 | 5.1:+13935657 | MS.gene64826:CDS |
| ATAAGACTCGGCTATGGAAT+GGG | 0.490306 | 5.1:+13936027 | MS.gene64826:CDS |
| TATAAGACTCGGCTATGGAA+TGG | 0.494787 | 5.1:+13936026 | MS.gene64826:CDS |
| GCATACATACCTACAACAAT+GGG | 0.495198 | 5.1:-13934658 | None:intergenic |
| TGCAACATTAATGGCATCTG+AGG | 0.495726 | 5.1:-13935802 | None:intergenic |
| AGCATACATACCTACAACAA+TGG | 0.501223 | 5.1:-13934659 | None:intergenic |
| TTCACAAACTGGAACTGGTC+CGG | 0.513315 | 5.1:-13934902 | None:intergenic |
| TTTCTCAAGATTTCTTGTGA+TGG | 0.525235 | 5.1:+13934622 | MS.gene64826:CDS |
| AAATCTTCGTAAATCATCTC+AGG | 0.525481 | 5.1:+13936485 | MS.gene64826:CDS |
| GAAAAGTGATATTATTAGTG+TGG | 0.530123 | 5.1:+13935770 | MS.gene64826:CDS |
| TACCTGGCTAAGGTACAATC+TGG | 0.547079 | 5.1:-13935659 | None:intergenic |
| GACGCTATAAGACTCGGCTA+TGG | 0.548905 | 5.1:+13936021 | MS.gene64826:CDS |
| GCAACATTAATGGCATCTGA+GGG | 0.557171 | 5.1:-13935801 | None:intergenic |
| TCCAGAAAATAGCTCGAGAA+GGG | 0.576030 | 5.1:+13934546 | MS.gene64826:CDS |
| TATGCATTTAGCTATCAAGC+AGG | 0.596160 | 5.1:+13936275 | MS.gene64826:CDS |
| ATAGTAGTTTATTCAGACAA+GGG | 0.597464 | 5.1:+13934569 | MS.gene64826:CDS |
| TTCACAGACGCTATAAGACT+CGG | 0.599122 | 5.1:+13936015 | MS.gene64826:CDS |
| TAATGTTGCAAATAAATGCA+AGG | 0.602512 | 5.1:+13935815 | MS.gene64826:CDS |
| AAGTTGTCAATACCTGGCTA+AGG | 0.603032 | 5.1:-13935669 | None:intergenic |
| TTCCAGAAAATAGCTCGAGA+AGG | 0.604172 | 5.1:+13934545 | MS.gene64826:CDS |
| GATAGTAGTTTATTCAGACA+AGG | 0.606215 | 5.1:+13934568 | MS.gene64826:CDS |
| CAGGAAAGATTTAATGACGC+AGG | 0.608205 | 5.1:+13936294 | MS.gene64826:CDS |
| CAACATTAATGGCATCTGAG+GGG | 0.647803 | 5.1:-13935800 | None:intergenic |
| TGAAGTGGAACAAGAGATCG+AGG | 0.688028 | 5.1:+13934790 | MS.gene64826:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAGAAATTTTGATTTTTTAA+AGG | + | chr5.1:13935862-13935881 | MS.gene64826:intron | 10.0% |
| !!! | AGAAATTTTGATTTTTTAAA+GGG | + | chr5.1:13935863-13935882 | MS.gene64826:intron | 10.0% |
| !! | ATTTCTTTACTTACATATAT+TGG | - | chr5.1:13935991-13936010 | None:intergenic | 15.0% |
| !! | CAAATATAAAAATCATAAAG+AGG | - | chr5.1:13935955-13935974 | None:intergenic | 15.0% |
| !!! | GAAATTTTGATTTTTTAAAG+GGG | + | chr5.1:13935864-13935883 | MS.gene64826:intron | 15.0% |
| !! | AAAAATCAAAATTTCTTGAC+AGG | - | chr5.1:13935859-13935878 | None:intergenic | 20.0% |
| !! | AAAATCAAAATTTCTTGACA+GGG | - | chr5.1:13935858-13935877 | None:intergenic | 20.0% |
| !! | ACTAAAACAGAAAGAATTAT+TGG | + | chr5.1:13935418-13935437 | MS.gene64826:intron | 20.0% |
| !! | CAATTTGAATAAAGTTAAAC+AGG | + | chr5.1:13935455-13935474 | MS.gene64826:intron | 20.0% |
| !! | TTATATGTTAGGTATAGTTT+AGG | + | chr5.1:13935054-13935073 | MS.gene64826:intron | 20.0% |
| !!! | AATAAAAAAGCATAACAAGA+AGG | - | chr5.1:13935709-13935728 | None:intergenic | 20.0% |
| !!! | TAAATTCGTGTTTTATTGAA+CGG | + | chr5.1:13934719-13934738 | MS.gene64826:intron | 20.0% |
| !!! | TAATTCTTTCTGTTTTAGTA+TGG | - | chr5.1:13935417-13935436 | None:intergenic | 20.0% |
| !!! | TTGTTTTATTTTACTCTTTC+AGG | + | chr5.1:13935591-13935610 | MS.gene64826:intron | 20.0% |
| !!! | TTTTTATATTTGATTTGTGC+AGG | + | chr5.1:13935963-13935982 | MS.gene64826:intron | 20.0% |
| ! | AAAACATTAGAACAAGGATA+AGG | - | chr5.1:13935523-13935542 | None:intergenic | 25.0% |
| ! | AATCAAAATTTCCAAGAAGA+TGG | - | chr5.1:13935139-13935158 | None:intergenic | 25.0% |
| ! | AGAAATCTTGAGAAAAATTG+TGG | - | chr5.1:13934617-13934636 | None:intergenic | 25.0% |
| ! | ATAGTAGTTTATTCAGACAA+GGG | + | chr5.1:13934569-13934588 | MS.gene64826:CDS | 25.0% |
| ! | ATGATATAGCATGAATGTAA+AGG | - | chr5.1:13936174-13936193 | None:intergenic | 25.0% |
| ! | ATTACATTATACCATCTTCT+TGG | + | chr5.1:13935125-13935144 | MS.gene64826:intron | 25.0% |
| ! | ATTTAAAAGTTGTCAATACC+TGG | - | chr5.1:13935678-13935697 | None:intergenic | 25.0% |
| ! | GAAAAGTGATATTATTAGTG+TGG | + | chr5.1:13935770-13935789 | MS.gene64826:CDS | 25.0% |
| ! | GAAATCTTGAGAAAAATTGT+GGG | - | chr5.1:13934616-13934635 | None:intergenic | 25.0% |
| ! | GATGCAATTAGACTAAATAA+AGG | - | chr5.1:13935323-13935342 | None:intergenic | 25.0% |
| ! | GCATTTATTTGCAACATTAA+TGG | - | chr5.1:13935814-13935833 | None:intergenic | 25.0% |
| ! | TAATGTTGCAAATAAATGCA+AGG | + | chr5.1:13935815-13935834 | MS.gene64826:CDS | 25.0% |
| ! | TGAAATTATTTGCATGTAAG+AGG | - | chr5.1:13935482-13935501 | None:intergenic | 25.0% |
| ! | TGATTCTAAGCTTATATGTT+AGG | + | chr5.1:13935043-13935062 | MS.gene64826:intron | 25.0% |
| !! | ATATGGCATTTTATAAGGAT+CGG | - | chr5.1:13934871-13934890 | None:intergenic | 25.0% |
| !!! | ATGAGAGATTATAGCTTTTT+TGG | - | chr5.1:13935211-13935230 | None:intergenic | 25.0% |
| !!! | TGAGAGATTATAGCTTTTTT+GGG | - | chr5.1:13935210-13935229 | None:intergenic | 25.0% |
| !!! | TTTTTTGACCTGTATCTTAA+TGG | + | chr5.1:13934816-13934835 | MS.gene64826:intron | 25.0% |
| AAAAGTCAACAAACAAGCTT+AGG | - | chr5.1:13936439-13936458 | None:intergenic | 30.0% | |
| AAAGACTAGATCATGAAGTA+TGG | + | chr5.1:13934936-13934955 | MS.gene64826:intron | 30.0% | |
| AAATCTTCGTAAATCATCTC+AGG | + | chr5.1:13936485-13936504 | MS.gene64826:CDS | 30.0% | |
| ACGCAGGTAAAATATTGTTT+GGG | + | chr5.1:13936310-13936329 | MS.gene64826:intron | 30.0% | |
| ATATAGCATGAATGTAAAGG+AGG | - | chr5.1:13936171-13936190 | None:intergenic | 30.0% | |
| ATTAGAACAAGGATAAGGAT+GGG | - | chr5.1:13935518-13935537 | None:intergenic | 30.0% | |
| CTTATAAAATGCCATATTGC+AGG | + | chr5.1:13934874-13934893 | MS.gene64826:intron | 30.0% | |
| GATAGTAGTTTATTCAGACA+AGG | + | chr5.1:13934568-13934587 | MS.gene64826:CDS | 30.0% | |
| TGAAGCAATAGCAATGTATT+GGG | + | chr5.1:13935542-13935561 | MS.gene64826:intron | 30.0% | |
| TGATTTATTCTATGACCTAG+TGG | - | chr5.1:13935275-13935294 | None:intergenic | 30.0% | |
| TGCTTCAAAACATTAGAACA+AGG | - | chr5.1:13935529-13935548 | None:intergenic | 30.0% | |
| TGTCTAACTTCAAAATGCTT+AGG | - | chr5.1:13935929-13935948 | None:intergenic | 30.0% | |
| TTACACATCTGCAAGTATTA+TGG | + | chr5.1:13936353-13936372 | MS.gene64826:intron | 30.0% | |
| TTGAAGCAATAGCAATGTAT+TGG | + | chr5.1:13935541-13935560 | MS.gene64826:intron | 30.0% | |
| TTTATGATGTATTGCTTGAC+AGG | + | chr5.1:13936073-13936092 | MS.gene64826:CDS | 30.0% | |
| TTTCTCAAGATTTCTTGTGA+TGG | + | chr5.1:13934622-13934641 | MS.gene64826:CDS | 30.0% | |
| ! | CTGCAATATGGCATTTTATA+AGG | - | chr5.1:13934876-13934895 | None:intergenic | 30.0% |
| ! | GTTTTCAATCTGAGTTACAA+CGG | + | chr5.1:13934503-13934522 | MS.gene64826:CDS | 30.0% |
| ! | TTTACTCTTTCAGGTGATAA+TGG | + | chr5.1:13935600-13935619 | MS.gene64826:intron | 30.0% |
| !! | CTAATAATATCACTTTTCCC+TGG | - | chr5.1:13935768-13935787 | None:intergenic | 30.0% |
| AAAATGCCATATTGCAGGAT+TGG | + | chr5.1:13934879-13934898 | MS.gene64826:intron | 35.0% | |
| AAACTTGCACACAGAATCTA+TGG | - | chr5.1:13936148-13936167 | None:intergenic | 35.0% | |
| AAGCTTGAATACCCAAATCT+TGG | + | chr5.1:13936397-13936416 | MS.gene64826:intron | 35.0% | |
| AGCATACATACCTACAACAA+TGG | - | chr5.1:13934662-13934681 | None:intergenic | 35.0% | |
| AGTTTATAATTCCTTCAGCC+AGG | + | chr5.1:13935747-13935766 | MS.gene64826:intron | 35.0% | |
| CAACTAGGTTATTCACAAAC+TGG | - | chr5.1:13934916-13934935 | None:intergenic | 35.0% | |
| CATTAGAACAAGGATAAGGA+TGG | - | chr5.1:13935519-13935538 | None:intergenic | 35.0% | |
| CCATGAAAATGCCAAGATTT+GGG | - | chr5.1:13936411-13936430 | None:intergenic | 35.0% | |
| GACGCAGGTAAAATATTGTT+TGG | + | chr5.1:13936309-13936328 | MS.gene64826:intron | 35.0% | |
| GCATACATACCTACAACAAT+GGG | - | chr5.1:13934661-13934680 | None:intergenic | 35.0% | |
| GTTTATAATTCCTTCAGCCA+GGG | + | chr5.1:13935748-13935767 | MS.gene64826:intron | 35.0% | |
| TATGCATTTAGCTATCAAGC+AGG | + | chr5.1:13936275-13936294 | MS.gene64826:CDS | 35.0% | |
| TCCATGAAAATGCCAAGATT+TGG | - | chr5.1:13936412-13936431 | None:intergenic | 35.0% | |
| TGGATGGGTACAATATGATT+TGG | - | chr5.1:13935255-13935274 | None:intergenic | 35.0% | |
| TTATTCTATGACCTAGTGGA+TGG | - | chr5.1:13935271-13935290 | None:intergenic | 35.0% | |
| ! | AAAGCTTTTAGATGCTGAAG+TGG | + | chr5.1:13934775-13934794 | MS.gene64826:CDS | 35.0% |
| ! | CATGATCTAGTCTTTCAACT+AGG | - | chr5.1:13934931-13934950 | None:intergenic | 35.0% |
| ! | TATTCTATGACCTAGTGGAT+GGG | - | chr5.1:13935270-13935289 | None:intergenic | 35.0% |
| !! | ATTTTCTGGAAATGGTGACA+CGG | - | chr5.1:13934536-13934555 | None:intergenic | 35.0% |
| AAGTTGTCAATACCTGGCTA+AGG | - | chr5.1:13935672-13935691 | None:intergenic | 40.0% | |
| ATAAGACTCGGCTATGGAAT+GGG | + | chr5.1:13936027-13936046 | MS.gene64826:CDS | 40.0% | |
| CAACATTAATGGCATCTGAG+GGG | - | chr5.1:13935803-13935822 | None:intergenic | 40.0% | |
| CAGGAAAGATTTAATGACGC+AGG | + | chr5.1:13936294-13936313 | MS.gene64826:CDS | 40.0% | |
| CATCGATGCATATCCTATCA+CGG | - | chr5.1:13934688-13934707 | None:intergenic | 40.0% | |
| GCAACATTAATGGCATCTGA+GGG | - | chr5.1:13935804-13935823 | None:intergenic | 40.0% | |
| GCCAATGAACATTCAAGCAT+TGG | + | chr5.1:13934987-13935006 | MS.gene64826:intron | 40.0% | |
| GCCAATGCTTGAATGTTCAT+TGG | - | chr5.1:13934991-13935010 | None:intergenic | 40.0% | |
| GGGCAGAGTGCATAATAAAA+AGG | + | chr5.1:13936047-13936066 | MS.gene64826:CDS | 40.0% | |
| GGTTATTCACAAACTGGAAC+TGG | - | chr5.1:13934910-13934929 | None:intergenic | 40.0% | |
| GTGCACAACCATTAAGATAC+AGG | - | chr5.1:13934827-13934846 | None:intergenic | 40.0% | |
| TATAAGACTCGGCTATGGAA+TGG | + | chr5.1:13936026-13936045 | MS.gene64826:CDS | 40.0% | |
| TATGTATGCTATGCCGTGAT+AGG | + | chr5.1:13934672-13934691 | MS.gene64826:intron | 40.0% | |
| TATGTTCTGCCCATTGTTGT+AGG | + | chr5.1:13934649-13934668 | MS.gene64826:CDS | 40.0% | |
| TCATATTGTACCCATCCACT+AGG | + | chr5.1:13935257-13935276 | MS.gene64826:intron | 40.0% | |
| TCCAGAAAATAGCTCGAGAA+GGG | + | chr5.1:13934546-13934565 | MS.gene64826:CDS | 40.0% | |
| TGCAACATTAATGGCATCTG+AGG | - | chr5.1:13935805-13935824 | None:intergenic | 40.0% | |
| TGCATCATTAGTCCTTCTCA+AGG | + | chr5.1:13935337-13935356 | MS.gene64826:intron | 40.0% | |
| TTCACAGACGCTATAAGACT+CGG | + | chr5.1:13936015-13936034 | MS.gene64826:CDS | 40.0% | |
| TTCCAGAAAATAGCTCGAGA+AGG | + | chr5.1:13934545-13934564 | MS.gene64826:CDS | 40.0% | |
| ! | AACGGTTCTTTTGTTGATGC+AGG | + | chr5.1:13934737-13934756 | MS.gene64826:intron | 40.0% |
| ! | CCCAAATCTTGGCATTTTCA+TGG | + | chr5.1:13936408-13936427 | MS.gene64826:intron | 40.0% |
| ! | GTTTGTTACAGTGCCATAGA+TGG | + | chr5.1:13936213-13936232 | MS.gene64826:intron | 40.0% |
| !! | CTCGAGCTATTTTCTGGAAA+TGG | - | chr5.1:13934544-13934563 | None:intergenic | 40.0% |
| !! | TTTTCTGGAAATGGTGACAC+GGG | - | chr5.1:13934535-13934554 | None:intergenic | 40.0% |
| !!! | AGCTTTTTTGGGAGTTCTCA+TGG | - | chr5.1:13935199-13935218 | None:intergenic | 40.0% |
| !!! | TGTTGACTTTTGCAGCTACA+TGG | + | chr5.1:13936448-13936467 | MS.gene64826:intron | 40.0% |
| ACACAGAATCTATGGTGGCA+AGG | - | chr5.1:13936140-13936159 | None:intergenic | 45.0% | |
| AGTTCTTGAGCTACCGAATC+TGG | - | chr5.1:13936240-13936259 | None:intergenic | 45.0% | |
| CTCACACAATGTCCTTGAGA+AGG | - | chr5.1:13935352-13935371 | None:intergenic | 45.0% | |
| CTTGCACACAGAATCTATGG+TGG | - | chr5.1:13936145-13936164 | None:intergenic | 45.0% | |
| TACCGAATCTGGACCATCTA+TGG | - | chr5.1:13936229-13936248 | None:intergenic | 45.0% | |
| TACCTGGCTAAGGTACAATC+TGG | - | chr5.1:13935662-13935681 | None:intergenic | 45.0% | |
| TGAAGTGGAACAAGAGATCG+AGG | + | chr5.1:13934790-13934809 | MS.gene64826:CDS | 45.0% | |
| TGCCATAGATGGTCCAGATT+CGG | + | chr5.1:13936224-13936243 | MS.gene64826:CDS | 45.0% | |
| TGGGTATTCAAGCTTGCAGA+AGG | - | chr5.1:13936392-13936411 | None:intergenic | 45.0% | |
| TTCACAAACTGGAACTGGTC+CGG | - | chr5.1:13934905-13934924 | None:intergenic | 45.0% | |
| !! | TATCACTTTTCCCTGGCTGA+AGG | - | chr5.1:13935761-13935780 | None:intergenic | 45.0% |
| !! | TCCCTTCTCGAGCTATTTTC+TGG | - | chr5.1:13934550-13934569 | None:intergenic | 45.0% |
| CAAGGATGCTACAGGTGACA+CGG | - | chr5.1:13936122-13936141 | None:intergenic | 50.0% | |
| GACGCTATAAGACTCGGCTA+TGG | + | chr5.1:13936021-13936040 | MS.gene64826:CDS | 50.0% | |
| TATGGTGGCAAGGATGCTAC+AGG | - | chr5.1:13936130-13936149 | None:intergenic | 50.0% | |
| TGCCAGATTGTACCTTAGCC+AGG | + | chr5.1:13935657-13935676 | MS.gene64826:CDS | 50.0% | |
| ! | TGCCATATTGCAGGATTGGC+CGG | + | chr5.1:13934883-13934902 | MS.gene64826:intron | 50.0% |
| GTCCGGCCAATCCTGCAATA+TGG | - | chr5.1:13934888-13934907 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 13934490 | 13936515 | 13934490 | ID=MS.gene64826 |
| chr5.1 | mRNA | 13934490 | 13936515 | 13934490 | ID=MS.gene64826.t1;Parent=MS.gene64826 |
| chr5.1 | exon | 13934490 | 13934670 | 13934490 | ID=MS.gene64826.t1.exon1;Parent=MS.gene64826.t1 |
| chr5.1 | CDS | 13934490 | 13934670 | 13934490 | ID=cds.MS.gene64826.t1;Parent=MS.gene64826.t1 |
| chr5.1 | exon | 13934759 | 13934811 | 13934759 | ID=MS.gene64826.t1.exon2;Parent=MS.gene64826.t1 |
| chr5.1 | CDS | 13934759 | 13934811 | 13934759 | ID=cds.MS.gene64826.t1;Parent=MS.gene64826.t1 |
| chr5.1 | exon | 13934896 | 13934952 | 13934896 | ID=MS.gene64826.t1.exon3;Parent=MS.gene64826.t1 |
| chr5.1 | CDS | 13934896 | 13934952 | 13934896 | ID=cds.MS.gene64826.t1;Parent=MS.gene64826.t1 |
| chr5.1 | exon | 13935613 | 13935678 | 13935613 | ID=MS.gene64826.t1.exon4;Parent=MS.gene64826.t1 |
| chr5.1 | CDS | 13935613 | 13935678 | 13935613 | ID=cds.MS.gene64826.t1;Parent=MS.gene64826.t1 |
| chr5.1 | exon | 13935765 | 13935836 | 13935765 | ID=MS.gene64826.t1.exon5;Parent=MS.gene64826.t1 |
| chr5.1 | CDS | 13935765 | 13935836 | 13935765 | ID=cds.MS.gene64826.t1;Parent=MS.gene64826.t1 |
| chr5.1 | exon | 13935985 | 13936094 | 13935985 | ID=MS.gene64826.t1.exon6;Parent=MS.gene64826.t1 |
| chr5.1 | CDS | 13935985 | 13936094 | 13935985 | ID=cds.MS.gene64826.t1;Parent=MS.gene64826.t1 |
| chr5.1 | exon | 13936224 | 13936315 | 13936224 | ID=MS.gene64826.t1.exon7;Parent=MS.gene64826.t1 |
| chr5.1 | CDS | 13936224 | 13936315 | 13936224 | ID=cds.MS.gene64826.t1;Parent=MS.gene64826.t1 |
| chr5.1 | exon | 13936463 | 13936515 | 13936463 | ID=MS.gene64826.t1.exon8;Parent=MS.gene64826.t1 |
| chr5.1 | CDS | 13936463 | 13936515 | 13936463 | ID=cds.MS.gene64826.t1;Parent=MS.gene64826.t1 |
| Gene Sequence |
| Protein sequence |
