Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64830.t1 | XP_003607217.2 | 90 | 948 | 92 | 1 | 1 | 945 | 40 | 987 | 0.00E+00 | 1706 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64830.t1 | P36428 | 72.5 | 947 | 255 | 3 | 4 | 945 | 55 | 1001 | 0.0e+00 | 1406.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64830.t1 | G7JNH3 | 90.0 | 948 | 92 | 1 | 1 | 945 | 1 | 948 | 0.0e+00 | 1706.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050559 | MS.gene64830 | 0.815942 | 7.14E-52 | -1.69E-46 |
| MS.gene050561 | MS.gene64830 | 0.810531 | 1.10E-50 | -1.69E-46 |
| MS.gene050562 | MS.gene64830 | 0.807101 | 5.96E-50 | -1.69E-46 |
| MS.gene051279 | MS.gene64830 | 0.802476 | 5.51E-49 | -1.69E-46 |
| MS.gene055694 | MS.gene64830 | 0.811589 | 6.49E-51 | -1.69E-46 |
| MS.gene058294 | MS.gene64830 | 0.804204 | 2.42E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene063074 | MS.gene64830 | PPI |
| MS.gene64830 | MS.gene68122 | PPI |
| MS.gene64830 | MS.gene68723 | PPI |
| MS.gene64830 | MS.gene014188 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64830.t1 | MTR_4g074640 | 89.979 | 948 | 92 | 1 | 1 | 945 | 1 | 948 | 0.0 | 1739 |
| MS.gene64830.t1 | MTR_4g074670 | 82.713 | 457 | 79 | 0 | 5 | 461 | 8 | 464 | 0.0 | 824 |
| MS.gene64830.t1 | MTR_4g074670 | 75.393 | 191 | 47 | 0 | 757 | 947 | 445 | 635 | 5.10e-71 | 248 |
| MS.gene64830.t1 | MTR_4g074670 | 80.142 | 282 | 56 | 0 | 180 | 461 | 1 | 282 | 1.72e-162 | 484 |
| MS.gene64830.t1 | MTR_4g074670 | 81.609 | 174 | 32 | 0 | 774 | 947 | 280 | 453 | 5.13e-73 | 248 |
| MS.gene64830.t1 | MTR_3g118360 | 34.182 | 825 | 451 | 21 | 13 | 804 | 86 | 851 | 1.62e-126 | 404 |
| MS.gene64830.t1 | MTR_3g118360 | 34.182 | 825 | 451 | 21 | 13 | 804 | 86 | 851 | 2.41e-126 | 404 |
| MS.gene64830.t1 | MTR_3g118360 | 34.182 | 825 | 451 | 21 | 13 | 804 | 86 | 851 | 1.78e-125 | 404 |
| MS.gene64830.t1 | MTR_3g118360 | 31.699 | 612 | 346 | 15 | 222 | 802 | 1 | 571 | 1.21e-65 | 234 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64830.t1 | AT1G50200 | 72.545 | 947 | 255 | 3 | 4 | 945 | 55 | 1001 | 0.0 | 1401 |
| MS.gene64830.t1 | AT1G50200 | 71.937 | 955 | 255 | 4 | 4 | 945 | 55 | 1009 | 0.0 | 1394 |
| MS.gene64830.t1 | AT5G22800 | 35.152 | 825 | 444 | 22 | 13 | 804 | 83 | 849 | 2.91e-133 | 425 |
| MS.gene64830.t1 | AT5G22800 | 35.152 | 825 | 444 | 22 | 13 | 804 | 108 | 874 | 4.82e-133 | 425 |
Find 217 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTCATAATGTTCAAGTTTA+TGG | 0.095893 | 5.1:-14019517 | MS.gene64830:CDS |
| AACATTTATGCTACTTATTT+TGG | 0.136454 | 5.1:-14025172 | MS.gene64830:CDS |
| GAAGAACAATAGATCCTTTC+TGG | 0.201321 | 5.1:+14019083 | None:intergenic |
| CACCAGCTCGAATGCACTTC+TGG | 0.208889 | 5.1:+14025454 | None:intergenic |
| ACTGGTGCTCGGCCATATTC+TGG | 0.216626 | 5.1:-14023160 | MS.gene64830:CDS |
| AAGGGTCTGCGGACTGTTTC+TGG | 0.234343 | 5.1:-14018841 | MS.gene64830:CDS |
| TCTTTGGTCAGGAAAATTTC+TGG | 0.242948 | 5.1:-14024933 | MS.gene64830:intron |
| ATGGAACCTTGTCTTTATTC+AGG | 0.262339 | 5.1:-14024797 | MS.gene64830:intron |
| GTTTCAAATTTGCTTGGTTC+AGG | 0.270432 | 5.1:-14020993 | MS.gene64830:CDS |
| GACAGCTGTGGAACATGTTC+AGG | 0.291996 | 5.1:-14022013 | MS.gene64830:CDS |
| TGCTCTTGATGCAATTAAAA+TGG | 0.295903 | 5.1:-14018445 | MS.gene64830:CDS |
| TAACCGAGATGCCGCGTCTT+TGG | 0.300564 | 5.1:-14024851 | MS.gene64830:CDS |
| ATCAAGAACTGCTCAAAATA+AGG | 0.306307 | 5.1:-14021214 | MS.gene64830:intron |
| CCAGTGTCAACGTGCTTTGC+AGG | 0.310029 | 5.1:+14024589 | None:intergenic |
| GAAAGGAGATAAAGGTAAAT+TGG | 0.318522 | 5.1:-14016057 | MS.gene64830:CDS |
| AATTGACTCAATTCTTCTTA+AGG | 0.321886 | 5.1:+14018936 | None:intergenic |
| ATGTATGGTTAGCGGCTATA+AGG | 0.328806 | 5.1:+14019247 | None:intergenic |
| CCTGGACGTGTTCTTCCCTT+TGG | 0.334344 | 5.1:-14025082 | MS.gene64830:CDS |
| TGGTGATGTTGGTGTAATTC+TGG | 0.341373 | 5.1:-14020238 | MS.gene64830:CDS |
| TGAGCAAATTAATGCTGAAT+TGG | 0.344749 | 5.1:-14018908 | MS.gene64830:CDS |
| TCAGGAAAATTTCTGGGAAA+TGG | 0.345759 | 5.1:-14024926 | MS.gene64830:intron |
| GGTCCGACTTTCCCAGAATA+TGG | 0.356983 | 5.1:+14023148 | None:intergenic |
| CTGTCATTTGCCATTGCTGA+TGG | 0.364745 | 5.1:-14023067 | MS.gene64830:CDS |
| CTCTTCGAAGAACTTCAAAA+AGG | 0.370514 | 5.1:+14026565 | None:intergenic |
| TTTGAATTGTGGGATACATA+TGG | 0.375692 | 5.1:-14021424 | MS.gene64830:CDS |
| GGCCAAGATGGCCCTACTTC+AGG | 0.378146 | 5.1:-14016696 | MS.gene64830:intron |
| AGTAGATGAAGCGGCTAAGC+TGG | 0.382670 | 5.1:-14018403 | MS.gene64830:CDS |
| TCGTGCTTCACATTGGTAAT+GGG | 0.382910 | 5.1:-14019489 | MS.gene64830:CDS |
| ATGTTGGGCAGCTGGTCTTT+TGG | 0.385798 | 5.1:-14025372 | MS.gene64830:CDS |
| AGTTTGCCCAATCTAGTGTT+AGG | 0.386296 | 5.1:+14025495 | None:intergenic |
| ATGTCTCTGGACTCGTAGTC+AGG | 0.387872 | 5.1:+14025124 | None:intergenic |
| AGCAGAATAGCATCGAAAAT+AGG | 0.394070 | 5.1:+14024496 | None:intergenic |
| CTTTGGTCAGGAAAATTTCT+GGG | 0.395767 | 5.1:-14024932 | MS.gene64830:intron |
| GAGTGGCTGAGTAATGCTTT+GGG | 0.399075 | 5.1:-14016026 | MS.gene64830:CDS |
| ACTCCATCTGCATTGAGATA+TGG | 0.403780 | 5.1:-14024816 | MS.gene64830:CDS |
| ATAGGTAGCGTTTGAATTGT+GGG | 0.406155 | 5.1:-14021434 | MS.gene64830:intron |
| TTCTCATGTTGATGTTGGCC+TGG | 0.406787 | 5.1:-14016415 | MS.gene64830:CDS |
| TGTTGATCCTAACACTAGAT+TGG | 0.408359 | 5.1:-14025502 | MS.gene64830:CDS |
| AATGTAGGTTTATCCTGATC+CGG | 0.410601 | 5.1:-14018744 | MS.gene64830:intron |
| CAAGAGGAGGAGGAAAGTTT+CGG | 0.410641 | 5.1:-14022181 | MS.gene64830:CDS |
| TTCGTGCTTCACATTGGTAA+TGG | 0.413069 | 5.1:-14019490 | MS.gene64830:CDS |
| GCATCAACAAGTCGATTTCT+CGG | 0.413075 | 5.1:+14015311 | None:intergenic |
| CTTAAGGAATCAGCATCAAC+AGG | 0.414659 | 5.1:+14018952 | None:intergenic |
| AGAGTGGCTGAGTAATGCTT+TGG | 0.418202 | 5.1:-14016027 | MS.gene64830:CDS |
| AACAGCAGCAAGAGCACATT+AGG | 0.421486 | 5.1:-14022213 | MS.gene64830:CDS |
| CTATGCTGAGCAAGGTGGTC+AGG | 0.422720 | 5.1:-14020202 | MS.gene64830:intron |
| AAGTGTTGTGGCAAATGTGC+TGG | 0.430083 | 5.1:-14022257 | MS.gene64830:CDS |
| AACAAGGTTGTAGTTTGTGC+TGG | 0.431318 | 5.1:-14016089 | MS.gene64830:CDS |
| TCCACCTCCGGCGTCATGTC+AGG | 0.434003 | 5.1:-14026626 | None:intergenic |
| ATTTCAGCTTTCTTAGCAGC+AGG | 0.441476 | 5.1:+14016722 | None:intergenic |
| TACCTGAAGTAGGGCCATCT+TGG | 0.443045 | 5.1:+14016694 | None:intergenic |
| TTGAATTGTGGGATACATAT+GGG | 0.443063 | 5.1:-14021423 | MS.gene64830:CDS |
| TGTATGGTTAGCGGCTATAA+GGG | 0.450030 | 5.1:+14019248 | None:intergenic |
| ACCCTTGATACGCATGGCTT+CGG | 0.450138 | 5.1:+14018858 | None:intergenic |
| TATAGGTAGCGTTTGAATTG+TGG | 0.450971 | 5.1:-14021435 | MS.gene64830:intron |
| GCGTTAGCAAAGAGGAGAGT+AGG | 0.452058 | 5.1:+14026494 | None:intergenic |
| ATAAAATTGACATGGCATAC+AGG | 0.452723 | 5.1:-14023114 | MS.gene64830:CDS |
| TTAAACAAGAAGCCATTAGC+TGG | 0.452886 | 5.1:-14025341 | MS.gene64830:CDS |
| TTTCGGCAGAACCTTAGTTA+AGG | 0.454210 | 5.1:-14022164 | MS.gene64830:intron |
| TGCCGAAGCCATGCGTATCA+AGG | 0.455197 | 5.1:-14018860 | MS.gene64830:CDS |
| ACCAGCTCGAATGCACTTCT+GGG | 0.457402 | 5.1:+14025455 | None:intergenic |
| AAGTTCCCATGCCCAGCTAA+TGG | 0.458940 | 5.1:+14025329 | None:intergenic |
| CAGGAAAATTTCTGGGAAAT+GGG | 0.459057 | 5.1:-14024925 | MS.gene64830:CDS |
| GTGTCGGAGAAAGGAGATAA+AGG | 0.459986 | 5.1:-14016065 | MS.gene64830:CDS |
| AAACTTTAACCATATGTCTC+TGG | 0.460356 | 5.1:+14025111 | None:intergenic |
| TGTAAGGATTACAGCTGAAA+AGG | 0.463474 | 5.1:-14016475 | MS.gene64830:CDS |
| CTGGTGCTCGGCCATATTCT+GGG | 0.468254 | 5.1:-14023159 | MS.gene64830:CDS |
| GTTGATCCTAACACTAGATT+GGG | 0.468358 | 5.1:-14025501 | MS.gene64830:CDS |
| TGCATTTCTCATGTTGATGT+TGG | 0.470612 | 5.1:-14016420 | MS.gene64830:CDS |
| AAAACAAATGCAAAGCTGTA+AGG | 0.471642 | 5.1:-14016491 | MS.gene64830:CDS |
| ATGATAGTTTCAAATTTGCT+TGG | 0.474087 | 5.1:-14020999 | MS.gene64830:CDS |
| GTAACACATTTACAGGCAAC+TGG | 0.475309 | 5.1:-14023178 | MS.gene64830:intron |
| GGGAGATGTGGTAAAGGAAA+AGG | 0.476017 | 5.1:-14015993 | MS.gene64830:CDS |
| GACACAACTCTAGCCGGATC+AGG | 0.476857 | 5.1:+14018731 | None:intergenic |
| GGAAAAGGAGGTCTTGTAAC+GGG | 0.477542 | 5.1:-14015978 | MS.gene64830:CDS |
| GTAACATGTGTGTGCATGTA+TGG | 0.480970 | 5.1:+14019232 | None:intergenic |
| GTCAACGTGCTTTGCAGGCA+GGG | 0.481293 | 5.1:+14024594 | None:intergenic |
| GGGTTGTTGCGGATCACATC+AGG | 0.482984 | 5.1:-14023093 | MS.gene64830:CDS |
| TTTCAAATTTGCTTGGTTCA+GGG | 0.485471 | 5.1:-14020992 | MS.gene64830:intron |
| TGTCAACGTGCTTTGCAGGC+AGG | 0.486337 | 5.1:+14024593 | None:intergenic |
| TAAGCTGGAAGGAAGTTTGC+TGG | 0.490814 | 5.1:-14018388 | MS.gene64830:CDS |
| TGTGCTGGGGTGTCGGAGAA+AGG | 0.492016 | 5.1:-14016074 | MS.gene64830:CDS |
| GAGGAGAGTAGGGTCATTGA+AGG | 0.494575 | 5.1:+14026505 | None:intergenic |
| GTTGATTCTGTTAATACTGA+TGG | 0.494916 | 5.1:-14020258 | MS.gene64830:CDS |
| TTGTGACAGCTGTTATTCTA+CGG | 0.496737 | 5.1:+14018475 | None:intergenic |
| TGTCATTTGCCATTGCTGAT+GGG | 0.498811 | 5.1:-14023066 | MS.gene64830:CDS |
| CAACATATAATACCTGAAGT+AGG | 0.498903 | 5.1:+14016684 | None:intergenic |
| CACGAACTGCTGCAACATCC+AGG | 0.499765 | 5.1:+14016397 | None:intergenic |
| GCTGAGGAGGGAATTGCTAA+AGG | 0.500043 | 5.1:-14018501 | MS.gene64830:CDS |
| GTTAATACTGATGGTGATGT+TGG | 0.502082 | 5.1:-14020249 | MS.gene64830:CDS |
| TGATGAATGCAGGAAGTACT+TGG | 0.502247 | 5.1:-14019118 | MS.gene64830:intron |
| TTCAGGGGAACGTACTGAGC+GGG | 0.503019 | 5.1:-14021996 | MS.gene64830:CDS |
| AGGAGGTCTTGTAACGGGTC+AGG | 0.503180 | 5.1:-14015973 | MS.gene64830:intron |
| TTTGCATAGACTTTCGATGT+TGG | 0.504113 | 5.1:-14019571 | MS.gene64830:intron |
| TGCTAAGAAAGCTGAAATCA+AGG | 0.509077 | 5.1:-14016717 | MS.gene64830:CDS |
| CTCCGTCGAGCTGTTCGCTA+TGG | 0.511679 | 5.1:-14022591 | MS.gene64830:CDS |
| CTACCTGTGTGAGATCTAAC+GGG | 0.513935 | 5.1:+14021398 | None:intergenic |
| GTCTATCCTCACCTTAACTA+AGG | 0.519096 | 5.1:+14022153 | None:intergenic |
| GTGGTAAAAGCAATATATAC+TGG | 0.521169 | 5.1:-14020291 | MS.gene64830:CDS |
| TGTTACTGTCAGCAAGTTGG+TGG | 0.522495 | 5.1:-14021084 | MS.gene64830:intron |
| GAACATACTTTACAGCCAAA+GGG | 0.526626 | 5.1:+14025067 | None:intergenic |
| AAGAAGCCATTAGCTGGGCA+TGG | 0.527805 | 5.1:-14025335 | MS.gene64830:CDS |
| ATGCTTTGGGGTCACTGAAA+GGG | 0.529281 | 5.1:-14016013 | MS.gene64830:CDS |
| TTCTGGGAAATGGGTGACAC+AGG | 0.529618 | 5.1:-14024916 | MS.gene64830:CDS |
| ATTGCTGATGGGTCTCGTCC+CGG | 0.532789 | 5.1:-14023055 | MS.gene64830:intron |
| GTATCTCTCACGCGCTTCGC+CGG | 0.533290 | 5.1:+14026587 | None:intergenic |
| TAAACAAGAAGCCATTAGCT+GGG | 0.537126 | 5.1:-14025340 | MS.gene64830:CDS |
| AGGAACCGACATTGAGTGGC+CGG | 0.537230 | 5.1:-14026606 | MS.gene64830:CDS |
| AATTTGAAACTATCATCTGT+TGG | 0.537269 | 5.1:+14021006 | None:intergenic |
| AGAACATACTTTACAGCCAA+AGG | 0.538832 | 5.1:+14025066 | None:intergenic |
| CCTACCTGTGTGAGATCTAA+CGG | 0.539043 | 5.1:+14021397 | None:intergenic |
| ATGTCTAACCACAGTTCAGT+AGG | 0.539072 | 5.1:-14024639 | MS.gene64830:intron |
| AACATATAATACCTGAAGTA+GGG | 0.539900 | 5.1:+14016685 | None:intergenic |
| GGAAGGAAGTTTGCTGGATG+AGG | 0.540536 | 5.1:-14018382 | MS.gene64830:intron |
| AATGCTTTGGGGTCACTGAA+AGG | 0.543277 | 5.1:-14016014 | MS.gene64830:CDS |
| CCTGCAAAGCACGTTGACAC+TGG | 0.543375 | 5.1:-14024589 | MS.gene64830:CDS |
| GAACTTGAAATGAAGCATGT+TGG | 0.543494 | 5.1:+14019536 | None:intergenic |
| TAACCAAAGACGCGGCATCT+CGG | 0.543926 | 5.1:+14024848 | None:intergenic |
| AGGAGAGTAGGGTCATTGAA+GGG | 0.545511 | 5.1:+14026506 | None:intergenic |
| CGTTAGCAAAGAGGAGAGTA+GGG | 0.548303 | 5.1:+14026495 | None:intergenic |
| CCAACTGACACAACTCTAGC+CGG | 0.548858 | 5.1:+14018725 | None:intergenic |
| ACCCAGAAGTGCATTCGAGC+TGG | 0.549128 | 5.1:-14025456 | MS.gene64830:CDS |
| CTTCACATTGGTAATGGGAC+TGG | 0.552145 | 5.1:-14019484 | MS.gene64830:CDS |
| TTTGGTGGTGATGATAAAGC+TGG | 0.555876 | 5.1:-14025154 | MS.gene64830:CDS |
| CTGAAAGGGAGATGTGGTAA+AGG | 0.558294 | 5.1:-14015999 | MS.gene64830:CDS |
| TGTAGTTTGTGCTGGGGTGT+CGG | 0.558316 | 5.1:-14016081 | MS.gene64830:CDS |
| ACAAGGTTGTAGTTTGTGCT+GGG | 0.558406 | 5.1:-14016088 | MS.gene64830:CDS |
| TGTCTCTGGACTCGTAGTCA+GGG | 0.559464 | 5.1:+14025125 | None:intergenic |
| AGCTGAAATCAAGGCCAAGA+TGG | 0.559778 | 5.1:-14016708 | MS.gene64830:CDS |
| CCGGCTAGAGTTGTGTCAGT+TGG | 0.560215 | 5.1:-14018725 | MS.gene64830:CDS |
| ACAGCTGTGGAACATGTTCA+GGG | 0.561456 | 5.1:-14022012 | MS.gene64830:CDS |
| CGACGTATTAAAAGCTGAAG+AGG | 0.562921 | 5.1:-14022565 | MS.gene64830:CDS |
| CTTCGCCGGCCACTCAATGT+CGG | 0.563252 | 5.1:+14026601 | None:intergenic |
| TAAACAGGGGTTATCAGTGA+TGG | 0.563816 | 5.1:-14016135 | MS.gene64830:intron |
| AATGGGACTGGTATCTCTGT+TGG | 0.564833 | 5.1:-14019472 | MS.gene64830:CDS |
| CATGGCATACAGGGTTGTTG+CGG | 0.565636 | 5.1:-14023104 | MS.gene64830:CDS |
| TCAAAATGAATTTCTGTACA+AGG | 0.566846 | 5.1:+14024883 | None:intergenic |
| CAACTACAAGTTGATGTCGA+AGG | 0.567680 | 5.1:-14021270 | MS.gene64830:CDS |
| CCAAAGGGAAGAACACGTCC+AGG | 0.567955 | 5.1:+14025082 | None:intergenic |
| GCATGTGATTCAAGAGGAGG+AGG | 0.569350 | 5.1:-14022191 | MS.gene64830:CDS |
| GGCAAACATGTATACCAGAA+AGG | 0.569840 | 5.1:-14019097 | MS.gene64830:CDS |
| TCTATTTCATCTGAATTGTG+TGG | 0.570785 | 5.1:-14018653 | MS.gene64830:CDS |
| TGATGCATCACGCATAAATG+AGG | 0.574360 | 5.1:-14015361 | MS.gene64830:CDS |
| TAAAATTGACATGGCATACA+GGG | 0.576644 | 5.1:-14023113 | MS.gene64830:CDS |
| GCCGAAGCCATGCGTATCAA+GGG | 0.577052 | 5.1:-14018859 | MS.gene64830:CDS |
| TGAGCAGCAAGTAGATGAAG+CGG | 0.577455 | 5.1:-14018412 | MS.gene64830:CDS |
| CATAATGTTCAAGTTTATGG+AGG | 0.577824 | 5.1:-14019514 | MS.gene64830:CDS |
| ACTACGAGTCCAGAGACATA+TGG | 0.578092 | 5.1:-14025120 | MS.gene64830:CDS |
| CGGCCATATTCTGGGAAAGT+CGG | 0.580129 | 5.1:-14023151 | MS.gene64830:CDS |
| GTTCCATATCTCAATGCAGA+TGG | 0.580307 | 5.1:+14024813 | None:intergenic |
| GCTGATCTAGCTGTTAAAGA+TGG | 0.581410 | 5.1:-14016453 | MS.gene64830:CDS |
| AAGCACGTTGACACTGGCAT+GGG | 0.581424 | 5.1:-14024583 | MS.gene64830:CDS |
| AGAAGCCATTAGCTGGGCAT+GGG | 0.583711 | 5.1:-14025334 | MS.gene64830:CDS |
| ACATTTCAAAATAAGTGTGA+TGG | 0.584569 | 5.1:+14025391 | None:intergenic |
| CAGGGATTTAAGAGAGCCAT+CGG | 0.586238 | 5.1:+14024612 | None:intergenic |
| ATCACGCATAAATGAGGCTA+TGG | 0.587205 | 5.1:-14015355 | MS.gene64830:CDS |
| GATGAAGCGGCTAAGCTGGA+AGG | 0.587596 | 5.1:-14018399 | MS.gene64830:CDS |
| GTAGCATAAATGTTGTCTGA+TGG | 0.588340 | 5.1:+14025181 | None:intergenic |
| CACTGAGGAATCTACAAACA+AGG | 0.589743 | 5.1:-14016105 | MS.gene64830:CDS |
| AAAGCACGTTGACACTGGCA+TGG | 0.589998 | 5.1:-14024584 | MS.gene64830:CDS |
| TGTCAGGAACCGACATTGAG+TGG | 0.592532 | 5.1:-14026610 | MS.gene64830:CDS |
| ATTTACAGGCAACTGGTGCT+CGG | 0.594779 | 5.1:-14023171 | MS.gene64830:intron |
| AGATGTGGTAAAGGAAAAGG+AGG | 0.595385 | 5.1:-14015990 | MS.gene64830:CDS |
| CAGAAGTGCATTCGAGCTGG+TGG | 0.598259 | 5.1:-14025453 | MS.gene64830:CDS |
| TTCTGGGAAAGTCGGACCAA+GGG | 0.599667 | 5.1:-14023143 | MS.gene64830:CDS |
| AGTGTTGTGGCAAATGTGCT+GGG | 0.603198 | 5.1:-14022256 | MS.gene64830:CDS |
| TTGGATGTAAATGCAAAGGA+GGG | 0.603719 | 5.1:-14018889 | MS.gene64830:CDS |
| ACTCTCCTCTTTGCTAACGC+CGG | 0.603866 | 5.1:-14026491 | MS.gene64830:intron |
| CCGGACCGGCGTTAGCAAAG+AGG | 0.604298 | 5.1:+14026486 | None:intergenic |
| TTTCGTTCTCAGGGTCAGCA+AGG | 0.607814 | 5.1:+14018684 | None:intergenic |
| TGGCAACAAAGTAGTATGCA+AGG | 0.607863 | 5.1:-14019452 | MS.gene64830:intron |
| CCGCAGACCCTTGATACGCA+TGG | 0.609092 | 5.1:+14018852 | None:intergenic |
| GGAGAGTAGGGTCATTGAAG+GGG | 0.610058 | 5.1:+14026507 | None:intergenic |
| TGTCTAACCACAGTTCAGTA+GGG | 0.613871 | 5.1:-14024638 | MS.gene64830:intron |
| GGAGGTTTCGTGCTTCACAT+TGG | 0.619470 | 5.1:-14019496 | MS.gene64830:CDS |
| TGCGAAATTTAAGACAGCTG+TGG | 0.620526 | 5.1:-14022025 | MS.gene64830:CDS |
| AGTTGGTGGTGCTATTGTCA+TGG | 0.620882 | 5.1:-14021070 | MS.gene64830:CDS |
| GTCCATAGCGAACAGCTCGA+CGG | 0.621482 | 5.1:+14022589 | None:intergenic |
| ACAAGCTTCTATGCTGAGCA+AGG | 0.625524 | 5.1:-14020210 | MS.gene64830:CDS |
| ATTGGATGTAAATGCAAAGG+AGG | 0.628352 | 5.1:-14018890 | MS.gene64830:CDS |
| GTCTTAGGACCATGAGAGTG+TGG | 0.631834 | 5.1:-14020310 | MS.gene64830:intron |
| TCAGGGGAACGTACTGAGCG+GGG | 0.634186 | 5.1:-14021995 | MS.gene64830:CDS |
| GTGTGTGCATGTATGGTTAG+CGG | 0.634249 | 5.1:+14019239 | None:intergenic |
| GGGACGAGACCCATCAGCAA+TGG | 0.635525 | 5.1:+14023057 | None:intergenic |
| GACGTATTAAAAGCTGAAGA+GGG | 0.636943 | 5.1:-14022564 | MS.gene64830:CDS |
| TAGGCATGTGATTCAAGAGG+AGG | 0.642062 | 5.1:-14022194 | MS.gene64830:CDS |
| ATTTCATCTGAATTGTGTGG+CGG | 0.642488 | 5.1:-14018650 | MS.gene64830:intron |
| AGTGGCTGAGTAATGCTTTG+GGG | 0.644347 | 5.1:-14016025 | MS.gene64830:CDS |
| GTCTCTGGACTCGTAGTCAG+GGG | 0.645675 | 5.1:+14025126 | None:intergenic |
| ATTCTGGGAAAGTCGGACCA+AGG | 0.646320 | 5.1:-14023144 | MS.gene64830:CDS |
| CACAACGATCTTGACGACGT+GGG | 0.646477 | 5.1:-14025426 | MS.gene64830:CDS |
| AGGAAAAGGAGGTCTTGTAA+CGG | 0.647670 | 5.1:-14015979 | MS.gene64830:CDS |
| TGAATTGGATGTAAATGCAA+AGG | 0.649794 | 5.1:-14018893 | MS.gene64830:CDS |
| CATTAGGCATGTGATTCAAG+AGG | 0.650394 | 5.1:-14022197 | MS.gene64830:CDS |
| GTCATTATTAACCAAAGACG+CGG | 0.655004 | 5.1:+14024840 | None:intergenic |
| GGGTCACTGAAAGGGAGATG+TGG | 0.655092 | 5.1:-14016005 | MS.gene64830:CDS |
| GCACAACGATCTTGACGACG+TGG | 0.662521 | 5.1:-14025427 | MS.gene64830:CDS |
| GGATGTTGCAGCAGTTCGTG+AGG | 0.665110 | 5.1:-14016394 | MS.gene64830:CDS |
| CAGTTCAGTAGGGAGGCCGA+TGG | 0.666367 | 5.1:-14024628 | MS.gene64830:CDS |
| CAAGGTTGTAGTTTGTGCTG+GGG | 0.666393 | 5.1:-14016087 | MS.gene64830:CDS |
| ATGGGTGACACAGGTCCGTG+TGG | 0.668329 | 5.1:-14024907 | MS.gene64830:CDS |
| AGGGTCATTGAAGGGGACGA+CGG | 0.669299 | 5.1:+14026514 | None:intergenic |
| GGATGCAGATAAAATTGACA+TGG | 0.670809 | 5.1:-14023122 | MS.gene64830:CDS |
| ATTTCTGTACAAGGTCCACA+CGG | 0.677167 | 5.1:+14024892 | None:intergenic |
| AATCAGGCTTGTAAGTGTTG+TGG | 0.679087 | 5.1:-14022269 | MS.gene64830:intron |
| ACATATTTCAAACACACGAG+AGG | 0.690196 | 5.1:-14018544 | MS.gene64830:CDS |
| AAGGGAAGAACACGTCCAGG+AGG | 0.692145 | 5.1:+14025085 | None:intergenic |
| AAATAACCTGAATAAAGACA+AGG | 0.695023 | 5.1:+14024791 | None:intergenic |
| GGGGAACGTACTGAGCGGGG+AGG | 0.695954 | 5.1:-14021992 | MS.gene64830:intron |
| AGCTTCTATGCTGAGCAAGG+TGG | 0.702055 | 5.1:-14020207 | MS.gene64830:CDS |
| CAGCTGTGGAACATGTTCAG+GGG | 0.704327 | 5.1:-14022011 | MS.gene64830:CDS |
| TGGATGTAAATGCAAAGGAG+GGG | 0.709884 | 5.1:-14018888 | MS.gene64830:CDS |
| CCATGCGTATCAAGGGTCTG+CGG | 0.712151 | 5.1:-14018852 | MS.gene64830:CDS |
| GTTCAGGGGAACGTACTGAG+CGG | 0.716267 | 5.1:-14021997 | MS.gene64830:CDS |
| CTAACCACAGTTCAGTAGGG+AGG | 0.721171 | 5.1:-14024635 | MS.gene64830:intron |
| GTAAATTGGATGTATCAGAG+TGG | 0.743531 | 5.1:-14016043 | MS.gene64830:CDS |
| GTTCCCGTTAGATCTCACAC+AGG | 0.766218 | 5.1:-14021401 | MS.gene64830:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 14015314 | 14026633 | 14015314 | ID=MS.gene64830 |
| chr5.1 | mRNA | 14015314 | 14026633 | 14015314 | ID=MS.gene64830.t1;Parent=MS.gene64830 |
| chr5.1 | exon | 14026492 | 14026633 | 14026492 | ID=MS.gene64830.t1.exon1;Parent=MS.gene64830.t1 |
| chr5.1 | CDS | 14026492 | 14026633 | 14026492 | ID=cds.MS.gene64830.t1;Parent=MS.gene64830.t1 |
| chr5.1 | exon | 14025320 | 14025558 | 14025320 | ID=MS.gene64830.t1.exon2;Parent=MS.gene64830.t1 |
| chr5.1 | CDS | 14025320 | 14025558 | 14025320 | ID=cds.MS.gene64830.t1;Parent=MS.gene64830.t1 |
| chr5.1 | exon | 14025075 | 14025215 | 14025075 | ID=MS.gene64830.t1.exon3;Parent=MS.gene64830.t1 |
| chr5.1 | CDS | 14025075 | 14025215 | 14025075 | ID=cds.MS.gene64830.t1;Parent=MS.gene64830.t1 |
| chr5.1 | exon | 14024798 | 14024944 | 14024798 | ID=MS.gene64830.t1.exon4;Parent=MS.gene64830.t1 |
| chr5.1 | CDS | 14024798 | 14024944 | 14024798 | ID=cds.MS.gene64830.t1;Parent=MS.gene64830.t1 |
| chr5.1 | exon | 14024495 | 14024647 | 14024495 | ID=MS.gene64830.t1.exon5;Parent=MS.gene64830.t1 |
| chr5.1 | CDS | 14024495 | 14024647 | 14024495 | ID=cds.MS.gene64830.t1;Parent=MS.gene64830.t1 |
| chr5.1 | exon | 14023056 | 14023185 | 14023056 | ID=MS.gene64830.t1.exon6;Parent=MS.gene64830.t1 |
| chr5.1 | CDS | 14023056 | 14023185 | 14023056 | ID=cds.MS.gene64830.t1;Parent=MS.gene64830.t1 |
| chr5.1 | exon | 14022552 | 14022648 | 14022552 | ID=MS.gene64830.t1.exon7;Parent=MS.gene64830.t1 |
| chr5.1 | CDS | 14022552 | 14022648 | 14022552 | ID=cds.MS.gene64830.t1;Parent=MS.gene64830.t1 |
| chr5.1 | exon | 14022165 | 14022285 | 14022165 | ID=MS.gene64830.t1.exon8;Parent=MS.gene64830.t1 |
| chr5.1 | CDS | 14022165 | 14022285 | 14022165 | ID=cds.MS.gene64830.t1;Parent=MS.gene64830.t1 |
| chr5.1 | exon | 14021993 | 14022052 | 14021993 | ID=MS.gene64830.t1.exon9;Parent=MS.gene64830.t1 |
| chr5.1 | CDS | 14021993 | 14022052 | 14021993 | ID=cds.MS.gene64830.t1;Parent=MS.gene64830.t1 |
| chr5.1 | exon | 14021402 | 14021452 | 14021402 | ID=MS.gene64830.t1.exon10;Parent=MS.gene64830.t1 |
| chr5.1 | CDS | 14021402 | 14021452 | 14021402 | ID=cds.MS.gene64830.t1;Parent=MS.gene64830.t1 |
| chr5.1 | exon | 14021215 | 14021310 | 14021215 | ID=MS.gene64830.t1.exon11;Parent=MS.gene64830.t1 |
| chr5.1 | CDS | 14021215 | 14021310 | 14021215 | ID=cds.MS.gene64830.t1;Parent=MS.gene64830.t1 |
| chr5.1 | exon | 14020993 | 14021094 | 14020993 | ID=MS.gene64830.t1.exon12;Parent=MS.gene64830.t1 |
| chr5.1 | CDS | 14020993 | 14021094 | 14020993 | ID=cds.MS.gene64830.t1;Parent=MS.gene64830.t1 |
| chr5.1 | exon | 14020203 | 14020325 | 14020203 | ID=MS.gene64830.t1.exon13;Parent=MS.gene64830.t1 |
| chr5.1 | CDS | 14020203 | 14020325 | 14020203 | ID=cds.MS.gene64830.t1;Parent=MS.gene64830.t1 |
| chr5.1 | exon | 14019453 | 14019584 | 14019453 | ID=MS.gene64830.t1.exon14;Parent=MS.gene64830.t1 |
| chr5.1 | CDS | 14019453 | 14019584 | 14019453 | ID=cds.MS.gene64830.t1;Parent=MS.gene64830.t1 |
| chr5.1 | exon | 14019218 | 14019289 | 14019218 | ID=MS.gene64830.t1.exon15;Parent=MS.gene64830.t1 |
| chr5.1 | CDS | 14019218 | 14019289 | 14019218 | ID=cds.MS.gene64830.t1;Parent=MS.gene64830.t1 |
| chr5.1 | exon | 14019053 | 14019128 | 14019053 | ID=MS.gene64830.t1.exon16;Parent=MS.gene64830.t1 |
| chr5.1 | CDS | 14019053 | 14019128 | 14019053 | ID=cds.MS.gene64830.t1;Parent=MS.gene64830.t1 |
| chr5.1 | exon | 14018837 | 14018979 | 14018837 | ID=MS.gene64830.t1.exon17;Parent=MS.gene64830.t1 |
| chr5.1 | CDS | 14018837 | 14018979 | 14018837 | ID=cds.MS.gene64830.t1;Parent=MS.gene64830.t1 |
| chr5.1 | exon | 14018651 | 14018759 | 14018651 | ID=MS.gene64830.t1.exon18;Parent=MS.gene64830.t1 |
| chr5.1 | CDS | 14018651 | 14018759 | 14018651 | ID=cds.MS.gene64830.t1;Parent=MS.gene64830.t1 |
| chr5.1 | exon | 14018383 | 14018570 | 14018383 | ID=MS.gene64830.t1.exon19;Parent=MS.gene64830.t1 |
| chr5.1 | CDS | 14018383 | 14018570 | 14018383 | ID=cds.MS.gene64830.t1;Parent=MS.gene64830.t1 |
| chr5.1 | exon | 14016697 | 14016786 | 14016697 | ID=MS.gene64830.t1.exon20;Parent=MS.gene64830.t1 |
| chr5.1 | CDS | 14016697 | 14016786 | 14016697 | ID=cds.MS.gene64830.t1;Parent=MS.gene64830.t1 |
| chr5.1 | exon | 14016368 | 14016550 | 14016368 | ID=MS.gene64830.t1.exon21;Parent=MS.gene64830.t1 |
| chr5.1 | CDS | 14016368 | 14016550 | 14016368 | ID=cds.MS.gene64830.t1;Parent=MS.gene64830.t1 |
| chr5.1 | exon | 14015974 | 14016150 | 14015974 | ID=MS.gene64830.t1.exon22;Parent=MS.gene64830.t1 |
| chr5.1 | CDS | 14015974 | 14016150 | 14015974 | ID=cds.MS.gene64830.t1;Parent=MS.gene64830.t1 |
| chr5.1 | exon | 14015314 | 14015388 | 14015314 | ID=MS.gene64830.t1.exon23;Parent=MS.gene64830.t1 |
| chr5.1 | CDS | 14015314 | 14015388 | 14015314 | ID=cds.MS.gene64830.t1;Parent=MS.gene64830.t1 |
| Gene Sequence |
| Protein sequence |
