Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65122.t1 | KEH22820.1 | 98.3 | 295 | 5 | 0 | 1 | 295 | 1 | 295 | 2.50E-160 | 574.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65122.t1 | Q8GXU5 | 65.4 | 292 | 94 | 3 | 9 | 295 | 17 | 306 | 5.1e-106 | 385.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65122.t1 | A0A072UAH2 | 98.3 | 295 | 5 | 0 | 1 | 295 | 1 | 295 | 1.8e-160 | 574.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049424 | MS.gene65122 | 0.814778 | 1.30E-51 | -1.69E-46 |
| MS.gene050277 | MS.gene65122 | 0.814917 | 1.21E-51 | -1.69E-46 |
| MS.gene050807 | MS.gene65122 | 0.82124 | 4.49E-53 | -1.69E-46 |
| MS.gene050987 | MS.gene65122 | 0.827502 | 1.51E-54 | -1.69E-46 |
| MS.gene051243 | MS.gene65122 | 0.833935 | 4.01E-56 | -1.69E-46 |
| MS.gene05134 | MS.gene65122 | 0.818052 | 2.40E-52 | -1.69E-46 |
| MS.gene051789 | MS.gene65122 | 0.816372 | 5.72E-52 | -1.69E-46 |
| MS.gene052286 | MS.gene65122 | 0.813892 | 2.03E-51 | -1.69E-46 |
| MS.gene052302 | MS.gene65122 | 0.833495 | 5.16E-56 | -1.69E-46 |
| MS.gene052309 | MS.gene65122 | -0.807204 | 5.67E-50 | -1.69E-46 |
| MS.gene052376 | MS.gene65122 | 0.835629 | 1.50E-56 | -1.69E-46 |
| MS.gene052426 | MS.gene65122 | 0.81328 | 2.77E-51 | -1.69E-46 |
| MS.gene053188 | MS.gene65122 | 0.813506 | 2.47E-51 | -1.69E-46 |
| MS.gene054537 | MS.gene65122 | 0.817982 | 2.49E-52 | -1.69E-46 |
| MS.gene05510 | MS.gene65122 | 0.819618 | 1.06E-52 | -1.69E-46 |
| MS.gene056631 | MS.gene65122 | 0.802223 | 6.21E-49 | -1.69E-46 |
| MS.gene056760 | MS.gene65122 | 0.802556 | 5.31E-49 | -1.69E-46 |
| MS.gene057060 | MS.gene65122 | 0.804432 | 2.17E-49 | -1.69E-46 |
| MS.gene057754 | MS.gene65122 | 0.803515 | 3.36E-49 | -1.69E-46 |
| MS.gene058055 | MS.gene65122 | 0.81493 | 1.20E-51 | -1.69E-46 |
| MS.gene059317 | MS.gene65122 | 0.806927 | 6.48E-50 | -1.69E-46 |
| MS.gene060310 | MS.gene65122 | 0.802148 | 6.44E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65122.t1 | MTR_7g059010 | 98.305 | 295 | 5 | 0 | 1 | 295 | 1 | 295 | 0.0 | 598 |
| MS.gene65122.t1 | MTR_7g059010 | 98.299 | 294 | 5 | 0 | 1 | 294 | 18 | 311 | 0.0 | 595 |
| MS.gene65122.t1 | MTR_7g058930 | 76.140 | 285 | 68 | 0 | 11 | 295 | 16 | 300 | 3.36e-165 | 461 |
| MS.gene65122.t1 | MTR_8g075260 | 53.731 | 268 | 111 | 3 | 15 | 274 | 32 | 294 | 1.40e-94 | 288 |
| MS.gene65122.t1 | MTR_2g030510 | 53.878 | 245 | 110 | 1 | 15 | 256 | 47 | 291 | 2.79e-85 | 268 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65122.t1 | AT5G48850 | 65.411 | 292 | 94 | 3 | 9 | 295 | 17 | 306 | 4.09e-135 | 385 |
| MS.gene65122.t1 | AT1G04770 | 59.155 | 284 | 109 | 4 | 19 | 295 | 20 | 303 | 2.51e-116 | 337 |
| MS.gene65122.t1 | AT3G51280 | 55.385 | 260 | 111 | 2 | 19 | 274 | 30 | 288 | 1.05e-93 | 284 |
| MS.gene65122.t1 | AT4G20900 | 53.659 | 246 | 106 | 2 | 10 | 249 | 42 | 285 | 1.75e-84 | 260 |
| MS.gene65122.t1 | AT4G20900 | 50.382 | 262 | 106 | 3 | 10 | 249 | 42 | 301 | 2.07e-80 | 250 |
| MS.gene65122.t1 | AT5G44330 | 52.489 | 221 | 102 | 1 | 24 | 241 | 49 | 269 | 1.91e-67 | 218 |
| MS.gene65122.t1 | AT5G22794 | 65.672 | 67 | 23 | 0 | 96 | 162 | 71 | 137 | 5.62e-23 | 95.1 |
| MS.gene65122.t1 | AT5G22794 | 56.716 | 67 | 22 | 1 | 96 | 162 | 71 | 130 | 2.55e-16 | 76.3 |
Find 54 sgRNAs with CRISPR-Local
Find 136 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTAAGTTTATGGATGATTT+AGG | 0.115503 | 7.1:+42503498 | MS.gene65122:CDS |
| CTTTGTCGACCTTCCATTAA+AGG | 0.136205 | 7.1:-42502332 | None:intergenic |
| CAATTCCTCAGCTCTATTTC+TGG | 0.171057 | 7.1:-42503445 | None:intergenic |
| CTTGCCACAAGCTAAGTTTA+TGG | 0.189587 | 7.1:+42503488 | MS.gene65122:CDS |
| GCAAGAAACTGCAAGATTAT+TGG | 0.253847 | 7.1:+42502396 | MS.gene65122:CDS |
| GATAGATGCTGATGCTAATA+AGG | 0.267924 | 7.1:+42503314 | MS.gene65122:CDS |
| CTAAGTTTATGGATGATTTA+GGG | 0.285480 | 7.1:+42503499 | MS.gene65122:CDS |
| GTTATTCATAAGGTTCCTTA+TGG | 0.304411 | 7.1:+42501005 | MS.gene65122:CDS |
| TACCAAGGTGAGGCCTTTAA+TGG | 0.310819 | 7.1:+42502319 | MS.gene65122:CDS |
| AACTTGTTCAAGAATTAAAT+AGG | 0.323980 | 7.1:-42503385 | None:intergenic |
| AAGTAGCTATAGTGTACTTT+TGG | 0.340103 | 7.1:+42501778 | MS.gene65122:CDS |
| TTGATGGATTACTTAATGTT+TGG | 0.342938 | 7.1:+42503547 | MS.gene65122:CDS |
| AAGACCTCTAAAAGATTTGA+TGG | 0.349728 | 7.1:-42501895 | None:intergenic |
| AGTACCTACCTGAGCATGTT+TGG | 0.360029 | 7.1:-42501048 | None:intergenic |
| AAGTACACTATAGCTACTTC+TGG | 0.384228 | 7.1:-42501774 | None:intergenic |
| GGATAGTGCTCTAAAGGATA+TGG | 0.385948 | 7.1:+42501827 | MS.gene65122:CDS |
| TAAATAGGCTTCCTCATAAC+GGG | 0.403005 | 7.1:-42503370 | None:intergenic |
| GCATGTTTGGCTTTGACATA+AGG | 0.405107 | 7.1:-42501035 | None:intergenic |
| TCTCTATCATGTTATTCATA+AGG | 0.406833 | 7.1:+42500995 | MS.gene65122:CDS |
| AGAAGATATTTCCTCAAAGA+TGG | 0.410475 | 7.1:-42503595 | None:intergenic |
| ATCCATCAATTCCTTTCAAA+AGG | 0.416312 | 7.1:-42503533 | None:intergenic |
| CAGAGAGAAATGGAAGGAAT+TGG | 0.416840 | 7.1:+42500936 | None:intergenic |
| AAGAAGACTTCCCATCTTTG+AGG | 0.419105 | 7.1:+42503584 | MS.gene65122:CDS |
| TTGATTGTTTAGGGAAACTT+AGG | 0.429249 | 7.1:+42503228 | MS.gene65122:intron |
| GGAAGTCTTCTTGATCTAGT+TGG | 0.437256 | 7.1:-42503573 | None:intergenic |
| CAAAGTGGATAGTGCTCTAA+AGG | 0.448477 | 7.1:+42501821 | MS.gene65122:CDS |
| TTTCTTGCTTGATAGAAACT+TGG | 0.484181 | 7.1:-42502381 | None:intergenic |
| TGTTTAGGGAAACTTAGGTT+GGG | 0.491578 | 7.1:+42503233 | MS.gene65122:intron |
| TGTCAAAGCCAAACATGCTC+AGG | 0.496739 | 7.1:+42501040 | MS.gene65122:CDS |
| GGATTGTCTCATTAGACATA+AGG | 0.499259 | 7.1:-42503349 | None:intergenic |
| ACAAAGACTGCTCGCTCTCA+TGG | 0.500296 | 7.1:+42502349 | MS.gene65122:CDS |
| TGTGCTTCTTGATCTTTACA+AGG | 0.523150 | 7.1:+42501950 | MS.gene65122:CDS |
| AAACTTAGCTTGTGGCAAGT+TGG | 0.526800 | 7.1:-42503484 | None:intergenic |
| TTAAATAGGCTTCCTCATAA+CGG | 0.527300 | 7.1:-42503371 | None:intergenic |
| TCAGAAATGTGGAAGAATAG+AGG | 0.535352 | 7.1:+42502258 | MS.gene65122:intron |
| GAAGATATTTCCTCAAAGAT+GGG | 0.535613 | 7.1:-42503594 | None:intergenic |
| CACCTCAGCCATCATGTAGT+TGG | 0.535943 | 7.1:-42503271 | None:intergenic |
| AATGAGACAATCCCGTTATG+AGG | 0.542428 | 7.1:+42503359 | MS.gene65122:CDS |
| GACTTGATTTCATCAGAACC+TGG | 0.545316 | 7.1:-42503423 | None:intergenic |
| AATTATTGAAAAGAAAGCTA+AGG | 0.545780 | 7.1:+42502290 | MS.gene65122:CDS |
| ACATAAGGAGTATCACCATA+AGG | 0.554287 | 7.1:-42501020 | None:intergenic |
| TTGTTTAGGGAAACTTAGGT+TGG | 0.569335 | 7.1:+42503232 | MS.gene65122:intron |
| GTATTGAAGAAAAGTTCTAA+AGG | 0.575028 | 7.1:+42500960 | MS.gene65122:CDS |
| CAACTACATGATGGCTGAGG+TGG | 0.575581 | 7.1:+42503272 | MS.gene65122:CDS |
| TTCCATTAAAGGCCTCACCT+TGG | 0.596335 | 7.1:-42502321 | None:intergenic |
| AAGGTGAGGCCTTTAATGGA+AGG | 0.618904 | 7.1:+42502323 | MS.gene65122:CDS |
| GCAAAAGACCAACTACATGA+TGG | 0.621405 | 7.1:+42503263 | MS.gene65122:CDS |
| TCATCCATAAACTTAGCTTG+TGG | 0.632009 | 7.1:-42503492 | None:intergenic |
| AAGCTAAGGCTTATCTACCA+AGG | 0.641867 | 7.1:+42502304 | MS.gene65122:CDS |
| AATCAATGCTGGAGACAAAG+TGG | 0.650220 | 7.1:+42501806 | MS.gene65122:CDS |
| CATATACAGAGAGAAATGGA+AGG | 0.651435 | 7.1:+42500930 | None:intergenic |
| GACCAACTACATGATGGCTG+AGG | 0.657862 | 7.1:+42503269 | MS.gene65122:CDS |
| CAAGTCCAGAAATAGAGCTG+AGG | 0.668043 | 7.1:+42503440 | MS.gene65122:CDS |
| AAGGCTTATCTACCAAGGTG+AGG | 0.670425 | 7.1:+42502309 | MS.gene65122:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAATAAAAAAATAAAAA+AGG | - | chr7.1:42501548-42501567 | None:intergenic | 0.0% |
| !!! | AATTTTAAAATAAAATAATA+TGG | + | chr7.1:42502931-42502950 | MS.gene65122:intron | 0.0% |
| !!! | TATTATTTTATTTTAAAATT+TGG | - | chr7.1:42502931-42502950 | None:intergenic | 0.0% |
| !! | AAAATTAAATACTCTATAAA+AGG | - | chr7.1:42502784-42502803 | None:intergenic | 10.0% |
| !!! | AAATTTACTTTTTTATGAAT+TGG | + | chr7.1:42502757-42502776 | MS.gene65122:intron | 10.0% |
| !! | AAAGTAAAAATATTTGTACA+AGG | - | chr7.1:42502675-42502694 | None:intergenic | 15.0% |
| !! | AATTTAGAGATCAAATTAAA+AGG | - | chr7.1:42501166-42501185 | None:intergenic | 15.0% |
| !! | ATTTACACAAAAACTAAATT+AGG | - | chr7.1:42502239-42502258 | None:intergenic | 15.0% |
| !! | ATTTAGAGATCAAATTAAAA+GGG | - | chr7.1:42501165-42501184 | None:intergenic | 15.0% |
| !! | TTATATTGTTCAAATATTAC+CGG | - | chr7.1:42502564-42502583 | None:intergenic | 15.0% |
| !!! | ATAAAAAAGTAAATTTTGCA+AGG | - | chr7.1:42502753-42502772 | None:intergenic | 15.0% |
| !!! | ATTTTGCTTATATTTTGTTA+GGG | + | chr7.1:42501446-42501465 | MS.gene65122:intron | 15.0% |
| !!! | CATATTTTTGATACAAAATT+TGG | - | chr7.1:42501413-42501432 | None:intergenic | 15.0% |
| !!! | TAAAATTTGGAATATTTGTT+AGG | - | chr7.1:42502918-42502937 | None:intergenic | 15.0% |
| !!! | TATTTTGCTTATATTTTGTT+AGG | + | chr7.1:42501445-42501464 | MS.gene65122:intron | 15.0% |
| !!! | TTGTAGAAATGATTATTTTT+GGG | + | chr7.1:42503143-42503162 | MS.gene65122:intron | 15.0% |
| !!! | TTTGTAGAAATGATTATTTT+TGG | + | chr7.1:42503142-42503161 | MS.gene65122:intron | 15.0% |
| !! | AATTATTGAAAAGAAAGCTA+AGG | + | chr7.1:42502290-42502309 | MS.gene65122:CDS | 20.0% |
| !! | CAAAATGTAGTATATTTACA+AGG | - | chr7.1:42502702-42502721 | None:intergenic | 20.0% |
| !! | GATGTTCAATTATTGTATTA+TGG | + | chr7.1:42502010-42502029 | MS.gene65122:intron | 20.0% |
| !! | TAAGAAAGACCATATATAAT+AGG | - | chr7.1:42501482-42501501 | None:intergenic | 20.0% |
| !! | TATATTGTTCAAATATTACC+GGG | - | chr7.1:42502563-42502582 | None:intergenic | 20.0% |
| !! | TTAATATGCATTATTGTATG+TGG | + | chr7.1:42501121-42501140 | MS.gene65122:intron | 20.0% |
| !!! | AACTTGTTCAAGAATTAAAT+AGG | - | chr7.1:42503388-42503407 | None:intergenic | 20.0% |
| !!! | TCAAATAAATATTTTCACAG+AGG | + | chr7.1:42502988-42503007 | MS.gene65122:intron | 20.0% |
| !!! | TCTAATTCTTTCTTCTTTTT+TGG | + | chr7.1:42503030-42503049 | MS.gene65122:intron | 20.0% |
| !!! | TTCTTCTTTTTTACATTCTT+TGG | + | chr7.1:42501600-42501619 | MS.gene65122:intron | 20.0% |
| !!! | TTTTAAAGCCTGTTTTTAAT+CGG | + | chr7.1:42501231-42501250 | MS.gene65122:intron | 20.0% |
| ! | ACACCTTTCATATAAAATGT+TGG | + | chr7.1:42502187-42502206 | MS.gene65122:intron | 25.0% |
| ! | ATGTTATATTGTTTCAGTTC+TGG | + | chr7.1:42501188-42501207 | MS.gene65122:intron | 25.0% |
| ! | CAAATTAAAAGGGATAAAGA+TGG | - | chr7.1:42501155-42501174 | None:intergenic | 25.0% |
| ! | CATATAATGAAACACATGTT+TGG | - | chr7.1:42501981-42502000 | None:intergenic | 25.0% |
| ! | CTAAGTTTATGGATGATTTA+GGG | + | chr7.1:42503499-42503518 | MS.gene65122:CDS | 25.0% |
| ! | CTTGTATGATCTATATTGTA+GGG | - | chr7.1:42502595-42502614 | None:intergenic | 25.0% |
| ! | GAAAAAAAAAACAGTATTGC+AGG | - | chr7.1:42502642-42502661 | None:intergenic | 25.0% |
| ! | TCTCTATCATGTTATTCATA+AGG | + | chr7.1:42500995-42501014 | MS.gene65122:CDS | 25.0% |
| ! | TGGTTTAATCTTAAAGCAAA+AGG | - | chr7.1:42502466-42502485 | None:intergenic | 25.0% |
| !! | AACACATTGATTGATTGTTT+AGG | + | chr7.1:42503218-42503237 | MS.gene65122:intron | 25.0% |
| !! | ACACATTGATTGATTGTTTA+GGG | + | chr7.1:42503219-42503238 | MS.gene65122:intron | 25.0% |
| !! | CAACCAACATTTTATATGAA+AGG | - | chr7.1:42502193-42502212 | None:intergenic | 25.0% |
| !! | GTATTGAAGAAAAGTTCTAA+AGG | + | chr7.1:42500960-42500979 | MS.gene65122:CDS | 25.0% |
| !! | TTACTATTACCTTTTCAGTA+GGG | + | chr7.1:42501300-42501319 | MS.gene65122:intron | 25.0% |
| !! | TTGGTCTAATTCTTTTATCT+AGG | + | chr7.1:42503060-42503079 | MS.gene65122:intron | 25.0% |
| !! | TTTACTATTACCTTTTCAGT+AGG | + | chr7.1:42501299-42501318 | MS.gene65122:intron | 25.0% |
| !! | TTTTGTGTAAATCAGAAATG+TGG | + | chr7.1:42502247-42502266 | MS.gene65122:intron | 25.0% |
| !!! | AATGATTATTTTTGGGTTCA+AGG | + | chr7.1:42503150-42503169 | MS.gene65122:intron | 25.0% |
| !!! | ATCTTCTTTTAGAGATCAAT+TGG | + | chr7.1:42503611-42503630 | MS.gene65122:CDS | 25.0% |
| !!! | CTTCTTTTTTGGTACAAAAT+TGG | + | chr7.1:42503041-42503060 | MS.gene65122:intron | 25.0% |
| !!! | TTGATGGATTACTTAATGTT+TGG | + | chr7.1:42503547-42503566 | MS.gene65122:CDS | 25.0% |
| AACAGAATATAGGCAGTAAA+AGG | + | chr7.1:42501361-42501380 | MS.gene65122:intron | 30.0% | |
| AACTTGAATCAACACATGTT+TGG | - | chr7.1:42502486-42502505 | None:intergenic | 30.0% | |
| AGAAGATATTTCCTCAAAGA+TGG | - | chr7.1:42503598-42503617 | None:intergenic | 30.0% | |
| ATCCATCAATTCCTTTCAAA+AGG | - | chr7.1:42503536-42503555 | None:intergenic | 30.0% | |
| CCTACAATATAGATCATACA+AGG | + | chr7.1:42502593-42502612 | MS.gene65122:intron | 30.0% | |
| CCTTGTATGATCTATATTGT+AGG | - | chr7.1:42502596-42502615 | None:intergenic | 30.0% | |
| GAAGATATTTCCTCAAAGAT+GGG | - | chr7.1:42503597-42503616 | None:intergenic | 30.0% | |
| GAGACTACACCTATTATATA+TGG | + | chr7.1:42501470-42501489 | MS.gene65122:intron | 30.0% | |
| GCTAAGTTTATGGATGATTT+AGG | + | chr7.1:42503498-42503517 | MS.gene65122:CDS | 30.0% | |
| GTTATTCATAAGGTTCCTTA+TGG | + | chr7.1:42501005-42501024 | MS.gene65122:CDS | 30.0% | |
| TAGTACGATGTGATACAATT+GGG | - | chr7.1:42503105-42503124 | None:intergenic | 30.0% | |
| TCAATGTGTATGAATTCAGT+TGG | + | chr7.1:42501740-42501759 | MS.gene65122:intron | 30.0% | |
| TGCCTATATTCTGTTACAAA+GGG | - | chr7.1:42501356-42501375 | None:intergenic | 30.0% | |
| TTAAATAGGCTTCCTCATAA+CGG | - | chr7.1:42503374-42503393 | None:intergenic | 30.0% | |
| TTGATTGTTTAGGGAAACTT+AGG | + | chr7.1:42503228-42503247 | MS.gene65122:intron | 30.0% | |
| TTTCTTGCTTGATAGAAACT+TGG | - | chr7.1:42502384-42502403 | None:intergenic | 30.0% | |
| ! | AAGACCTCTAAAAGATTTGA+TGG | - | chr7.1:42501898-42501917 | None:intergenic | 30.0% |
| ! | AAGTAGCTATAGTGTACTTT+TGG | + | chr7.1:42501778-42501797 | MS.gene65122:CDS | 30.0% |
| ! | ATTCTTGAACAAGTTTTGCA+AGG | + | chr7.1:42503393-42503412 | MS.gene65122:CDS | 30.0% |
| ! | TAAAGTCACCGATTAAAAAC+AGG | - | chr7.1:42501242-42501261 | None:intergenic | 30.0% |
| !! | ACAATTGGGTTGAAGAAAAA+AGG | - | chr7.1:42503091-42503110 | None:intergenic | 30.0% |
| !! | CAATTGGGTTGAAGAAAAAA+GGG | - | chr7.1:42503090-42503109 | None:intergenic | 30.0% |
| !! | GAGGCTTTAAGCAAAAAAAT+TGG | + | chr7.1:42503007-42503026 | MS.gene65122:intron | 30.0% |
| AAGTACACTATAGCTACTTC+TGG | - | chr7.1:42501777-42501796 | None:intergenic | 35.0% | |
| ACCCATGTCAATATCATGTT+CGG | - | chr7.1:42502086-42502105 | None:intergenic | 35.0% | |
| ACCGAACATGATATTGACAT+GGG | + | chr7.1:42502082-42502101 | MS.gene65122:intron | 35.0% | |
| ACCTTGTATGACATTACACA+TGG | + | chr7.1:42502151-42502170 | MS.gene65122:intron | 35.0% | |
| ATGTGTATGAATTCAGTTGG+TGG | + | chr7.1:42501743-42501762 | MS.gene65122:intron | 35.0% | |
| CAGTGAATCTTTCAGATTCA+AGG | + | chr7.1:42501507-42501526 | MS.gene65122:intron | 35.0% | |
| CATTACACATGGCTAAAACT+CGG | + | chr7.1:42502162-42502181 | MS.gene65122:intron | 35.0% | |
| CATTATCTCACTCATATTGG+AGG | - | chr7.1:42502810-42502829 | None:intergenic | 35.0% | |
| CTCCAATATGAGTGAGATAA+TGG | + | chr7.1:42502808-42502827 | MS.gene65122:intron | 35.0% | |
| CTCCCTTTGTAACAGAATAT+AGG | + | chr7.1:42501351-42501370 | MS.gene65122:intron | 35.0% | |
| CTGCCTATATTCTGTTACAA+AGG | - | chr7.1:42501357-42501376 | None:intergenic | 35.0% | |
| GATAGATGCTGATGCTAATA+AGG | + | chr7.1:42503314-42503333 | MS.gene65122:CDS | 35.0% | |
| GCAAGAAACTGCAAGATTAT+TGG | + | chr7.1:42502396-42502415 | MS.gene65122:CDS | 35.0% | |
| GGATTGTCTCATTAGACATA+AGG | - | chr7.1:42503352-42503371 | None:intergenic | 35.0% | |
| GTAGTACGATGTGATACAAT+TGG | - | chr7.1:42503106-42503125 | None:intergenic | 35.0% | |
| GTCCATTATCTCACTCATAT+TGG | - | chr7.1:42502813-42502832 | None:intergenic | 35.0% | |
| TAAATAGGCTTCCTCATAAC+GGG | - | chr7.1:42503373-42503392 | None:intergenic | 35.0% | |
| TCAGAAATGTGGAAGAATAG+AGG | + | chr7.1:42502258-42502277 | MS.gene65122:intron | 35.0% | |
| TGTGCTTCTTGATCTTTACA+AGG | + | chr7.1:42501950-42501969 | MS.gene65122:CDS | 35.0% | |
| TGTTTAGGGAAACTTAGGTT+GGG | + | chr7.1:42503233-42503252 | MS.gene65122:intron | 35.0% | |
| TTACTTTGTCCCTACTGAAA+AGG | - | chr7.1:42501312-42501331 | None:intergenic | 35.0% | |
| TTGTTTAGGGAAACTTAGGT+TGG | + | chr7.1:42503232-42503251 | MS.gene65122:intron | 35.0% | |
| ! | AGCTATAGTGTACTTTTGGA+AGG | + | chr7.1:42501782-42501801 | MS.gene65122:CDS | 35.0% |
| ! | GAAGCCATCAAATCTTTTAG+AGG | + | chr7.1:42501891-42501910 | MS.gene65122:CDS | 35.0% |
| ! | TCATCCATAAACTTAGCTTG+TGG | - | chr7.1:42503495-42503514 | None:intergenic | 35.0% |
| !! | ACATAAGGAGTATCACCATA+AGG | - | chr7.1:42501023-42501042 | None:intergenic | 35.0% |
| !! | GACCTTTTGAAAGGAATTGA+TGG | + | chr7.1:42503531-42503550 | MS.gene65122:CDS | 35.0% |
| !!! | CTTGATGATGACCTTTTGAA+AGG | + | chr7.1:42503522-42503541 | MS.gene65122:CDS | 35.0% |
| !!! | TGACACTATTGTTTTAGTCC+CGG | + | chr7.1:42502542-42502561 | MS.gene65122:intron | 35.0% |
| AAGAAGACTTCCCATCTTTG+AGG | + | chr7.1:42503584-42503603 | MS.gene65122:CDS | 40.0% | |
| AAGCTAAGGCTTATCTACCA+AGG | + | chr7.1:42502304-42502323 | MS.gene65122:CDS | 40.0% | |
| AATCAATGCTGGAGACAAAG+TGG | + | chr7.1:42501806-42501825 | MS.gene65122:CDS | 40.0% | |
| AATGAGACAATCCCGTTATG+AGG | + | chr7.1:42503359-42503378 | MS.gene65122:CDS | 40.0% | |
| CAAAGTGGATAGTGCTCTAA+AGG | + | chr7.1:42501821-42501840 | MS.gene65122:CDS | 40.0% | |
| CAATTCCTCAGCTCTATTTC+TGG | - | chr7.1:42503448-42503467 | None:intergenic | 40.0% | |
| CACCGAACATGATATTGACA+TGG | + | chr7.1:42502081-42502100 | MS.gene65122:intron | 40.0% | |
| CTTGCCACAAGCTAAGTTTA+TGG | + | chr7.1:42503488-42503507 | MS.gene65122:CDS | 40.0% | |
| CTTTGTCGACCTTCCATTAA+AGG | - | chr7.1:42502335-42502354 | None:intergenic | 40.0% | |
| GACTTGATTTCATCAGAACC+TGG | - | chr7.1:42503426-42503445 | None:intergenic | 40.0% | |
| GCAAAAGACCAACTACATGA+TGG | + | chr7.1:42503263-42503282 | MS.gene65122:CDS | 40.0% | |
| GCCATGTGTAATGTCATACA+AGG | - | chr7.1:42502155-42502174 | None:intergenic | 40.0% | |
| GGAAGTCTTCTTGATCTAGT+TGG | - | chr7.1:42503576-42503595 | None:intergenic | 40.0% | |
| GGGACTAAAACAATAGTGTC+AGG | - | chr7.1:42502543-42502562 | None:intergenic | 40.0% | |
| ! | GTTTTGCAAGGAAAACTTCC+AGG | + | chr7.1:42503405-42503424 | MS.gene65122:CDS | 40.0% |
| !! | AAACTTAGCTTGTGGCAAGT+TGG | - | chr7.1:42503487-42503506 | None:intergenic | 40.0% |
| !! | ATCATGTTCGGTGTCTGTAT+CGG | - | chr7.1:42502074-42502093 | None:intergenic | 40.0% |
| !! | GCATGTTTGGCTTTGACATA+AGG | - | chr7.1:42501038-42501057 | None:intergenic | 40.0% |
| !! | GGATAGTGCTCTAAAGGATA+TGG | + | chr7.1:42501827-42501846 | MS.gene65122:CDS | 40.0% |
| !! | TTTTGGAAGGCAATCAATGC+TGG | + | chr7.1:42501795-42501814 | MS.gene65122:CDS | 40.0% |
| !!! | GTAGTTGGTCTTTTGCATGT+AGG | - | chr7.1:42503259-42503278 | None:intergenic | 40.0% |
| AAAGCCAAACATGCTCAGGT+AGG | + | chr7.1:42501044-42501063 | MS.gene65122:intron | 45.0% | |
| AAGGCTTATCTACCAAGGTG+AGG | + | chr7.1:42502309-42502328 | MS.gene65122:CDS | 45.0% | |
| AAGGTGAGGCCTTTAATGGA+AGG | + | chr7.1:42502323-42502342 | MS.gene65122:CDS | 45.0% | |
| AGTACCTACCTGAGCATGTT+TGG | - | chr7.1:42501051-42501070 | None:intergenic | 45.0% | |
| CAAGTCCAGAAATAGAGCTG+AGG | + | chr7.1:42503440-42503459 | MS.gene65122:CDS | 45.0% | |
| TACCAAGGTGAGGCCTTTAA+TGG | + | chr7.1:42502319-42502338 | MS.gene65122:CDS | 45.0% | |
| TGTCAAAGCCAAACATGCTC+AGG | + | chr7.1:42501040-42501059 | MS.gene65122:CDS | 45.0% | |
| TTCCATTAAAGGCCTCACCT+TGG | - | chr7.1:42502324-42502343 | None:intergenic | 45.0% | |
| !!! | ATTAAAACATATTTTTTATA+AGG | + | chr7.1:42502842-42502861 | MS.gene65122:intron | 5.0% |
| !!! | TTATTATTATTTTTTTATCA+AGG | + | chr7.1:42503185-42503204 | MS.gene65122:intron | 5.0% |
| ACAAAGACTGCTCGCTCTCA+TGG | + | chr7.1:42502349-42502368 | MS.gene65122:CDS | 50.0% | |
| CAACTACATGATGGCTGAGG+TGG | + | chr7.1:42503272-42503291 | MS.gene65122:CDS | 50.0% | |
| CACCTCAGCCATCATGTAGT+TGG | - | chr7.1:42503274-42503293 | None:intergenic | 50.0% | |
| GACCAACTACATGATGGCTG+AGG | + | chr7.1:42503269-42503288 | MS.gene65122:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 42500945 | 42503641 | 42500945 | ID=MS.gene65122 |
| chr7.1 | mRNA | 42500945 | 42503641 | 42500945 | ID=MS.gene65122.t1;Parent=MS.gene65122 |
| chr7.1 | exon | 42500945 | 42501061 | 42500945 | ID=MS.gene65122.t1.exon1;Parent=MS.gene65122.t1 |
| chr7.1 | CDS | 42500945 | 42501061 | 42500945 | ID=cds.MS.gene65122.t1;Parent=MS.gene65122.t1 |
| chr7.1 | exon | 42501759 | 42501971 | 42501759 | ID=MS.gene65122.t1.exon2;Parent=MS.gene65122.t1 |
| chr7.1 | CDS | 42501759 | 42501971 | 42501759 | ID=cds.MS.gene65122.t1;Parent=MS.gene65122.t1 |
| chr7.1 | exon | 42502262 | 42502417 | 42502262 | ID=MS.gene65122.t1.exon3;Parent=MS.gene65122.t1 |
| chr7.1 | CDS | 42502262 | 42502417 | 42502262 | ID=cds.MS.gene65122.t1;Parent=MS.gene65122.t1 |
| chr7.1 | exon | 42503240 | 42503641 | 42503240 | ID=MS.gene65122.t1.exon4;Parent=MS.gene65122.t1 |
| chr7.1 | CDS | 42503240 | 42503641 | 42503240 | ID=cds.MS.gene65122.t1;Parent=MS.gene65122.t1 |
| Gene Sequence |
| Protein sequence |
