Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66192.t1 | PNY04227.1 | 63.5 | 334 | 80 | 3 | 5 | 303 | 467 | 793 | 2.30E-105 | 392.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66192.t1 | Q10251 | 40.7 | 339 | 152 | 4 | 5 | 303 | 617 | 946 | 1.9e-60 | 234.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66192.t1 | A0A2K3NMG8 | 63.5 | 334 | 80 | 3 | 5 | 303 | 467 | 793 | 1.7e-105 | 392.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049262 | MS.gene66192 | 0.818857 | 1.57E-52 | -1.69E-46 |
| MS.gene049701 | MS.gene66192 | 0.804064 | 2.59E-49 | -1.69E-46 |
| MS.gene051710 | MS.gene66192 | 0.820413 | 6.95E-53 | -1.69E-46 |
| MS.gene055056 | MS.gene66192 | 0.819952 | 8.86E-53 | -1.69E-46 |
| MS.gene055058 | MS.gene66192 | 0.809978 | 1.45E-50 | -1.69E-46 |
| MS.gene056050 | MS.gene66192 | 0.810963 | 8.87E-51 | -1.69E-46 |
| MS.gene058515 | MS.gene66192 | 0.832834 | 7.54E-56 | -1.69E-46 |
| MS.gene05925 | MS.gene66192 | 0.81009 | 1.37E-50 | -1.69E-46 |
| MS.gene059276 | MS.gene66192 | 0.853142 | 2.91E-61 | -1.69E-46 |
| MS.gene059584 | MS.gene66192 | 0.810246 | 1.27E-50 | -1.69E-46 |
| MS.gene059605 | MS.gene66192 | 0.81056 | 1.08E-50 | -1.69E-46 |
| MS.gene059924 | MS.gene66192 | 0.819248 | 1.28E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66192.t1 | MTR_1g099000 | 61.947 | 339 | 82 | 3 | 5 | 303 | 881 | 1212 | 7.43e-129 | 398 |
| MS.gene66192.t1 | MTR_1g098970 | 59.412 | 340 | 91 | 3 | 5 | 304 | 367 | 699 | 5.31e-126 | 379 |
| MS.gene66192.t1 | MTR_4g005290 | 52.920 | 274 | 106 | 7 | 2 | 254 | 117 | 388 | 9.39e-79 | 245 |
| MS.gene66192.t1 | MTR_4g006320 | 52.889 | 225 | 66 | 2 | 2 | 186 | 169 | 393 | 1.74e-72 | 229 |
| MS.gene66192.t1 | MTR_4g011840 | 39.535 | 301 | 122 | 8 | 1 | 297 | 112 | 356 | 2.45e-55 | 186 |
| MS.gene66192.t1 | MTR_7g100900 | 36.789 | 299 | 110 | 9 | 1 | 297 | 116 | 337 | 1.41e-44 | 157 |
| MS.gene66192.t1 | MTR_7g102950 | 37.436 | 195 | 81 | 2 | 5 | 158 | 164 | 358 | 1.39e-32 | 124 |
| MS.gene66192.t1 | MTR_7g101830 | 35.204 | 196 | 86 | 3 | 2 | 156 | 176 | 371 | 1.76e-25 | 105 |
| MS.gene66192.t1 | MTR_7g102950 | 42.857 | 98 | 53 | 1 | 5 | 99 | 164 | 261 | 6.19e-16 | 77.4 |
| MS.gene66192.t1 | MTR_4g076265 | 47.692 | 65 | 31 | 1 | 1 | 65 | 4 | 65 | 5.26e-13 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66192.t1 | AT1G76810 | 53.982 | 339 | 109 | 3 | 5 | 303 | 836 | 1167 | 3.45e-107 | 339 |
| MS.gene66192.t1 | AT1G76720 | 50.588 | 340 | 110 | 5 | 5 | 303 | 759 | 1081 | 2.70e-94 | 303 |
| MS.gene66192.t1 | AT1G76720 | 50.588 | 340 | 110 | 5 | 5 | 303 | 792 | 1114 | 3.68e-94 | 303 |
| MS.gene66192.t1 | AT2G27700 | 49.521 | 313 | 117 | 3 | 5 | 276 | 166 | 478 | 6.17e-94 | 286 |
| MS.gene66192.t1 | AT2G27700 | 49.363 | 314 | 117 | 3 | 5 | 276 | 166 | 479 | 7.46e-94 | 286 |
| MS.gene66192.t1 | AT1G21160 | 47.198 | 339 | 132 | 3 | 5 | 303 | 628 | 959 | 3.08e-90 | 290 |
Find 69 sgRNAs with CRISPR-Local
Find 150 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATCTATTTCGTCAATTTA+AGG | 0.151064 | 3.3:-46370774 | MS.gene66192:CDS |
| GGACTTGAACACGCTATTTC+TGG | 0.155512 | 3.3:-46371160 | MS.gene66192:CDS |
| ATTTCTCAATCATGGTCTTT+TGG | 0.234728 | 3.3:+46372092 | None:intergenic |
| TAGCTCAATGGAAGCATTAC+TGG | 0.256266 | 3.3:-46371005 | MS.gene66192:CDS |
| TTCTGGCGCTAGTCTATATA+TGG | 0.338960 | 3.3:-46371143 | MS.gene66192:CDS |
| TTAACACAAAGTTCCTTCAT+TGG | 0.348516 | 3.3:+46371717 | None:intergenic |
| CTAACAGAAATATTCACTTC+TGG | 0.369600 | 3.3:+46370968 | None:intergenic |
| TATTATTTAAACAAATCAAT+AGG | 0.372750 | 3.3:-46372540 | MS.gene66192:CDS |
| ACAAGAGTATGCTACTATAT+TGG | 0.374979 | 3.3:-46370879 | MS.gene66192:CDS |
| GGTGAAGCCTGATGATGATT+TGG | 0.394558 | 3.3:-46371122 | MS.gene66192:CDS |
| TATTGCTCAGTTCAAGTCTC+AGG | 0.396407 | 3.3:-46372580 | MS.gene66192:CDS |
| GCTCGAATTGTGGTAACAAT+TGG | 0.397760 | 3.3:+46371756 | None:intergenic |
| TCAAGCTGACTTTCATATAA+AGG | 0.398585 | 3.3:-46372713 | MS.gene66192:CDS |
| CTGCAAGTTGGCTAGCTTCA+AGG | 0.407350 | 3.3:+46370837 | None:intergenic |
| TTCATCACTGCTACACGAAT+TGG | 0.409024 | 3.3:+46372751 | None:intergenic |
| GCTACACGAATTGGAGCATT+AGG | 0.411662 | 3.3:+46372760 | None:intergenic |
| TTGTGCCAACAGGTGCAATA+AGG | 0.411898 | 3.3:-46372503 | MS.gene66192:intron |
| ACATATTCCAAATCATCATC+AGG | 0.412129 | 3.3:+46371115 | None:intergenic |
| AATGAAGGAACTTTGTGTTA+AGG | 0.418973 | 3.3:-46371715 | MS.gene66192:intron |
| TGGAGAAGATTCTAGAATCA+AGG | 0.454307 | 3.3:-46372381 | MS.gene66192:CDS |
| GGCTTACATGGACTACGTTA+TGG | 0.454435 | 3.3:-46370732 | MS.gene66192:CDS |
| CTTTCATATAAAGGTCTTTG+AGG | 0.455230 | 3.3:-46372704 | MS.gene66192:intron |
| GGCATCTACACCTAGCTCAA+TGG | 0.470076 | 3.3:-46371017 | MS.gene66192:CDS |
| GTACGTAAATTTCTCAATCA+TGG | 0.480088 | 3.3:+46372084 | None:intergenic |
| ACATTCAGCATTGTGCCAAC+AGG | 0.483959 | 3.3:-46372513 | MS.gene66192:CDS |
| TTGAGCTAGGTGTAGATGCC+TGG | 0.492758 | 3.3:+46371020 | None:intergenic |
| TCGTCAATTTAAGGATTACA+TGG | 0.497561 | 3.3:-46370765 | MS.gene66192:CDS |
| AGGAAGTCTTCCCATGCATA+TGG | 0.498120 | 3.3:-46370682 | MS.gene66192:CDS |
| TGGTGATGGCGTTTATGTCC+AGG | 0.505358 | 3.3:-46371038 | MS.gene66192:CDS |
| TAGCCAACTTGCAGATGACC+TGG | 0.507809 | 3.3:-46370828 | MS.gene66192:CDS |
| GGACGGCATCAAGGCTTACA+TGG | 0.510246 | 3.3:-46370744 | MS.gene66192:CDS |
| AGAGAGAGAATCTGTTGATG+AGG | 0.512217 | 3.3:-46370702 | MS.gene66192:CDS |
| CAAAGTTCCTTCATTGGATG+AGG | 0.519140 | 3.3:+46371723 | None:intergenic |
| ATTGACACCTCATCCAATGA+AGG | 0.523422 | 3.3:-46371730 | MS.gene66192:CDS |
| GGATTACATGGACGGCATCA+AGG | 0.527071 | 3.3:-46370753 | MS.gene66192:CDS |
| TGCAAGTTGGCTAGCTTCAA+GGG | 0.536115 | 3.3:+46370838 | None:intergenic |
| CATCACATCCTTCGTATGCA+CGG | 0.538290 | 3.3:+46370928 | None:intergenic |
| GATGTGGAGTTATTCTTGAG+AGG | 0.538420 | 3.3:-46371073 | MS.gene66192:CDS |
| ACGAAGGATGTGATGAAGGC+AGG | 0.546463 | 3.3:-46370920 | MS.gene66192:CDS |
| AAAAGCGGCCTTTGAAGATG+TGG | 0.549201 | 3.3:-46371089 | MS.gene66192:CDS |
| GGGCATCAAGATCATTGCCC+AGG | 0.550099 | 3.3:-46371304 | MS.gene66192:intron |
| ATGTGGAGTTATTCTTGAGA+GGG | 0.554543 | 3.3:-46371072 | MS.gene66192:CDS |
| AGTAATGCTTCCATTGAGCT+AGG | 0.556974 | 3.3:+46371007 | None:intergenic |
| ATTGCTCAGTTCAAGTCTCA+GGG | 0.557151 | 3.3:-46372579 | MS.gene66192:CDS |
| ATCACATCCTTCGTATGCAC+GGG | 0.557591 | 3.3:+46370929 | None:intergenic |
| CAATTTAAGGATTACATGGA+CGG | 0.558916 | 3.3:-46370761 | MS.gene66192:CDS |
| GCATACGAAGGATGTGATGA+AGG | 0.563379 | 3.3:-46370924 | MS.gene66192:CDS |
| TACGTACAGTGAAAACGTGC+AGG | 0.563555 | 3.3:-46372068 | MS.gene66192:intron |
| AGTTACCTTATTGCACCTGT+TGG | 0.566159 | 3.3:+46372498 | None:intergenic |
| CACCCAGGTCATCTGCAAGT+TGG | 0.567348 | 3.3:+46370825 | None:intergenic |
| CAAAGAAATCAAAGCTGTGA+GGG | 0.570214 | 3.3:-46371325 | MS.gene66192:CDS |
| GGGATCGACAGTAGTGGTGA+TGG | 0.584966 | 3.3:-46371052 | MS.gene66192:CDS |
| AAATAGATGATCGATGACAT+TGG | 0.585243 | 3.3:+46370787 | None:intergenic |
| GGAGAAGATTCTAGAATCAA+GGG | 0.586424 | 3.3:-46372380 | MS.gene66192:CDS |
| GAATAACTCCACATCTTCAA+AGG | 0.589407 | 3.3:+46371081 | None:intergenic |
| ATGAAGGCAGGTGTAATGCT+TGG | 0.590346 | 3.3:-46370908 | MS.gene66192:CDS |
| TATAGGTCCCGTGCATACGA+AGG | 0.614263 | 3.3:-46370936 | MS.gene66192:CDS |
| TAGATGATCGATGACATTGG+AGG | 0.627169 | 3.3:+46370790 | None:intergenic |
| TGTCAATAAAGCTCGAATTG+TGG | 0.631490 | 3.3:+46371746 | None:intergenic |
| TAATATGTATGGGAGAGTGG+TGG | 0.633146 | 3.3:-46372401 | MS.gene66192:intron |
| AGCCAACTTGCAGATGACCT+GGG | 0.639297 | 3.3:-46370827 | MS.gene66192:CDS |
| TTGAGAGGGATCGACAGTAG+TGG | 0.645635 | 3.3:-46371058 | MS.gene66192:CDS |
| AAAGAAATCAAAGCTGTGAG+GGG | 0.659897 | 3.3:-46371324 | MS.gene66192:CDS |
| AGGTGGATATGATTCCTCGC+TGG | 0.668513 | 3.3:-46372792 | None:intergenic |
| TTACATGGACTACGTTATGG+AGG | 0.675391 | 3.3:-46370729 | MS.gene66192:CDS |
| TTAGGACATGCTTTCCAGCG+AGG | 0.675961 | 3.3:+46372778 | None:intergenic |
| ACAAAGAAATCAAAGCTGTG+AGG | 0.694513 | 3.3:-46371326 | MS.gene66192:CDS |
| TTGCTCAGTTCAAGTCTCAG+GGG | 0.697871 | 3.3:-46372578 | MS.gene66192:CDS |
| GAAGATTCTAGAATCAAGGG+AGG | 0.724967 | 3.3:-46372377 | MS.gene66192:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACAAATAAACTTTATAATTT+AGG | - | chr3.3:46371682-46371701 | MS.gene66192:intron | 10.0% |
| !! | CAAATAAACTTTATAATTTA+GGG | - | chr3.3:46371683-46371702 | MS.gene66192:intron | 10.0% |
| !! | TATTATTTAAACAAATCAAT+AGG | - | chr3.3:46370923-46370942 | MS.gene66192:CDS | 10.0% |
| !! | TTAAATATTATGTGAAAATA+AGG | + | chr3.3:46371425-46371444 | None:intergenic | 10.0% |
| !! | TTTAATATTTGATATTTCAT+TGG | - | chr3.3:46371306-46371325 | MS.gene66192:CDS | 10.0% |
| !! | AAAATCAAGAAAAACATAAT+TGG | + | chr3.3:46372226-46372245 | None:intergenic | 15.0% |
| !! | AATAAAAGTAATATCAACCT+AGG | + | chr3.3:46371896-46371915 | None:intergenic | 20.0% |
| !! | ATAAAAGTAATATCAACCTA+GGG | + | chr3.3:46371895-46371914 | None:intergenic | 20.0% |
| !! | ATGGTAAAACTATATAATCT+TGG | - | chr3.3:46371827-46371846 | MS.gene66192:intron | 20.0% |
| !!! | ATTGATGTTGTTTTAGTTAA+TGG | - | chr3.3:46371564-46371583 | MS.gene66192:intron | 20.0% |
| !!! | TGATATTACTTTTATTGATC+CGG | - | chr3.3:46371900-46371919 | MS.gene66192:intron | 20.0% |
| !!! | TTGTTTGGTTTAATATGTAT+GGG | - | chr3.3:46371052-46371071 | MS.gene66192:CDS | 20.0% |
| !!! | TTTGGAATATGTTAAAAAAG+CGG | - | chr3.3:46372359-46372378 | MS.gene66192:intron | 20.0% |
| !!! | TTTGTTTGGTTTAATATGTA+TGG | - | chr3.3:46371051-46371070 | MS.gene66192:CDS | 20.0% |
| ! | AAATCTGCTTAATTCTTTGA+CGG | - | chr3.3:46371266-46371285 | MS.gene66192:intron | 25.0% |
| ! | AAGTAATGTTGTCTAATTTC+AGG | - | chr3.3:46372099-46372118 | MS.gene66192:CDS | 25.0% |
| ! | AGTAATGTTGTCTAATTTCA+GGG | - | chr3.3:46372100-46372119 | MS.gene66192:CDS | 25.0% |
| ! | ATTTGATATTTCATTGGTGA+AGG | - | chr3.3:46371312-46371331 | MS.gene66192:CDS | 25.0% |
| ! | TCATCTATTTCGTCAATTTA+AGG | - | chr3.3:46372689-46372708 | MS.gene66192:intron | 25.0% |
| ! | TCTGTTAGTGCTAAAAATAT+AGG | - | chr3.3:46372510-46372529 | MS.gene66192:CDS | 25.0% |
| ! | TTATAAAGTTTATTTGTCCG+AGG | + | chr3.3:46371679-46371698 | None:intergenic | 25.0% |
| !! | CTTTCTTTTATTCTAAGTTG+TGG | - | chr3.3:46370806-46370825 | MS.gene66192:CDS | 25.0% |
| !!! | ATCAAATAAAGTTAGTTTGC+TGG | - | chr3.3:46371112-46371131 | MS.gene66192:CDS | 25.0% |
| !!! | TCAAATAAAGTTAGTTTGCT+GGG | - | chr3.3:46371113-46371132 | MS.gene66192:CDS | 25.0% |
| AAATAGATGATCGATGACAT+TGG | + | chr3.3:46372679-46372698 | None:intergenic | 30.0% | |
| AATGAAGGAACTTTGTGTTA+AGG | - | chr3.3:46371748-46371767 | MS.gene66192:CDS | 30.0% | |
| ACATATTCCAAATCATCATC+AGG | + | chr3.3:46372351-46372370 | None:intergenic | 30.0% | |
| ACATCAGAAATAACATGTCT+GGG | + | chr3.3:46371341-46371360 | None:intergenic | 30.0% | |
| ATAAGATTTCTGTTATCGCA+GGG | - | chr3.3:46372282-46372301 | MS.gene66192:intron | 30.0% | |
| ATACTTAACTGTTATTCCAC+TGG | - | chr3.3:46371486-46371505 | MS.gene66192:intron | 30.0% | |
| ATTGATCCGGTATTTAAGTA+TGG | - | chr3.3:46371913-46371932 | MS.gene66192:intron | 30.0% | |
| CAATTTAAGGATTACATGGA+CGG | - | chr3.3:46372702-46372721 | MS.gene66192:intron | 30.0% | |
| CTAACAGAAATATTCACTTC+TGG | + | chr3.3:46372498-46372517 | None:intergenic | 30.0% | |
| CTTTCATATAAAGGTCTTTG+AGG | - | chr3.3:46370759-46370778 | MS.gene66192:CDS | 30.0% | |
| GGATACAATCTGACATAAAA+AGG | + | chr3.3:46372205-46372224 | None:intergenic | 30.0% | |
| GTAAACAGAGAATATTAGCA+TGG | + | chr3.3:46370855-46370874 | None:intergenic | 30.0% | |
| GTACGTAAATTTCTCAATCA+TGG | + | chr3.3:46371382-46371401 | None:intergenic | 30.0% | |
| TAAACCAAACAAATCCTAAG+TGG | + | chr3.3:46371044-46371063 | None:intergenic | 30.0% | |
| TATATCTGTGTAGAGAGAAT+CGG | - | chr3.3:46372252-46372271 | MS.gene66192:intron | 30.0% | |
| TCGTCAATTTAAGGATTACA+TGG | - | chr3.3:46372698-46372717 | MS.gene66192:intron | 30.0% | |
| TTAACACAAAGTTCCTTCAT+TGG | + | chr3.3:46371749-46371768 | None:intergenic | 30.0% | |
| TTAATACTTACTTTCTGCCT+CGG | - | chr3.3:46371659-46371678 | MS.gene66192:intron | 30.0% | |
| TTACGTTATTCGTAACATGA+AGG | - | chr3.3:46372007-46372026 | MS.gene66192:intron | 30.0% | |
| ! | ACAAGAGTATGCTACTATAT+TGG | - | chr3.3:46372584-46372603 | MS.gene66192:CDS | 30.0% |
| ! | ATTTCTCAATCATGGTCTTT+TGG | + | chr3.3:46371374-46371393 | None:intergenic | 30.0% |
| ! | TATTTAAGTATGGTTTGGGT+AGG | - | chr3.3:46371923-46371942 | MS.gene66192:intron | 30.0% |
| ! | TCAAGCTGACTTTCATATAA+AGG | - | chr3.3:46370750-46370769 | MS.gene66192:CDS | 30.0% |
| ! | TTTCTCAATCATGGTCTTTT+GGG | + | chr3.3:46371373-46371392 | None:intergenic | 30.0% |
| !! | ATGATAAGTGTTGGAAACTT+AGG | - | chr3.3:46371978-46371997 | MS.gene66192:intron | 30.0% |
| !! | CTATCAAATTTGTTGCTTGA+TGG | - | chr3.3:46371808-46371827 | MS.gene66192:intron | 30.0% |
| AAAGAAATCAAAGCTGTGAG+GGG | - | chr3.3:46372139-46372158 | MS.gene66192:intron | 35.0% | |
| ACAAAGAAATCAAAGCTGTG+AGG | - | chr3.3:46372137-46372156 | MS.gene66192:intron | 35.0% | |
| ACATACACACTAGATGGTTA+TGG | + | chr3.3:46371854-46371873 | None:intergenic | 35.0% | |
| ATAACCATCTAGTGTGTATG+TGG | - | chr3.3:46371853-46371872 | MS.gene66192:intron | 35.0% | |
| ATGTGGAGTTATTCTTGAGA+GGG | - | chr3.3:46372391-46372410 | MS.gene66192:intron | 35.0% | |
| CAAAGAAATCAAAGCTGTGA+GGG | - | chr3.3:46372138-46372157 | MS.gene66192:intron | 35.0% | |
| CAACTCAATATCAAGTACCT+GGG | + | chr3.3:46372179-46372198 | None:intergenic | 35.0% | |
| CCCAAACCATACTTAAATAC+CGG | + | chr3.3:46371922-46371941 | None:intergenic | 35.0% | |
| CCGGTATTTAAGTATGGTTT+GGG | - | chr3.3:46371919-46371938 | MS.gene66192:intron | 35.0% | |
| GAATAACTCCACATCTTCAA+AGG | + | chr3.3:46372385-46372404 | None:intergenic | 35.0% | |
| GACATCAGAAATAACATGTC+TGG | + | chr3.3:46371342-46371361 | None:intergenic | 35.0% | |
| GATAAGATTTCTGTTATCGC+AGG | - | chr3.3:46372281-46372300 | MS.gene66192:intron | 35.0% | |
| GGTGATCAAATAGTTGTATC+TGG | - | chr3.3:46371600-46371619 | MS.gene66192:intron | 35.0% | |
| GTTAATGGTGTTCTACATGA+AGG | - | chr3.3:46371579-46371598 | MS.gene66192:intron | 35.0% | |
| GTTTAATATGTATGGGAGAG+TGG | - | chr3.3:46371059-46371078 | MS.gene66192:CDS | 35.0% | |
| TCAACTCAATATCAAGTACC+TGG | + | chr3.3:46372180-46372199 | None:intergenic | 35.0% | |
| TCCAACACTTATCATTTGCA+CGG | + | chr3.3:46371973-46371992 | None:intergenic | 35.0% | |
| TCCGGTATTTAAGTATGGTT+TGG | - | chr3.3:46371918-46371937 | MS.gene66192:intron | 35.0% | |
| TGTCAATAAAGCTCGAATTG+TGG | + | chr3.3:46371720-46371739 | None:intergenic | 35.0% | |
| TTAGCAAGTAAAGTTGTTCG+TGG | - | chr3.3:46372049-46372068 | MS.gene66192:intron | 35.0% | |
| TTATCCCCATCAGAAACAAA+TGG | + | chr3.3:46371188-46371207 | None:intergenic | 35.0% | |
| TTGCAAGTCAAGGTTATTGA+AGG | - | chr3.3:46371528-46371547 | MS.gene66192:intron | 35.0% | |
| ! | AAACAAATGGAGCATCTTAC+AGG | + | chr3.3:46371175-46371194 | None:intergenic | 35.0% |
| ! | AATAGTTGTATCTGGAATGC+AGG | - | chr3.3:46371608-46371627 | MS.gene66192:intron | 35.0% |
| ! | TGTTTCTGATGGGGATAATT+TGG | - | chr3.3:46371190-46371209 | MS.gene66192:intron | 35.0% |
| !! | ATGCTCCATTTGTTTCTGAT+GGG | - | chr3.3:46371180-46371199 | MS.gene66192:intron | 35.0% |
| !! | GGAGAAGATTCTAGAATCAA+GGG | - | chr3.3:46371083-46371102 | MS.gene66192:CDS | 35.0% |
| !! | TGGAGAAGATTCTAGAATCA+AGG | - | chr3.3:46371082-46371101 | MS.gene66192:CDS | 35.0% |
| !! | TGTTATTTCTGATGTCTCAG+TGG | - | chr3.3:46371346-46371365 | MS.gene66192:intron | 35.0% |
| !!! | GAGCGCAAATCTTTGTTTTT+GGG | - | chr3.3:46371216-46371235 | MS.gene66192:intron | 35.0% |
| AACAAATCCTAAGTGGATGC+AGG | + | chr3.3:46371037-46371056 | None:intergenic | 40.0% | |
| AGAGAGAGAATCTGTTGATG+AGG | - | chr3.3:46372761-46372780 | MS.gene66192:CDS | 40.0% | |
| AGTAATGCTTCCATTGAGCT+AGG | + | chr3.3:46372459-46372478 | None:intergenic | 40.0% | |
| AGTTACCTTATTGCACCTGT+TGG | + | chr3.3:46370968-46370987 | None:intergenic | 40.0% | |
| ATTGACACCTCATCCAATGA+AGG | - | chr3.3:46371733-46371752 | MS.gene66192:CDS | 40.0% | |
| ATTGCTCAGTTCAAGTCTCA+GGG | - | chr3.3:46370884-46370903 | MS.gene66192:CDS | 40.0% | |
| CAAAGTTCCTTCATTGGATG+AGG | + | chr3.3:46371743-46371762 | None:intergenic | 40.0% | |
| CTTAACTGTTATTCCACTGG+CGG | - | chr3.3:46371489-46371508 | MS.gene66192:intron | 40.0% | |
| GATGTGGAGTTATTCTTGAG+AGG | - | chr3.3:46372390-46372409 | MS.gene66192:intron | 40.0% | |
| GCTCGAATTGTGGTAACAAT+TGG | + | chr3.3:46371710-46371729 | None:intergenic | 40.0% | |
| GTCAAGGTTATTGAAGGCTA+TGG | - | chr3.3:46371534-46371553 | MS.gene66192:intron | 40.0% | |
| TAATATGTATGGGAGAGTGG+TGG | - | chr3.3:46371062-46371081 | MS.gene66192:CDS | 40.0% | |
| TAGATGATCGATGACATTGG+AGG | + | chr3.3:46372676-46372695 | None:intergenic | 40.0% | |
| TATTGCTCAGTTCAAGTCTC+AGG | - | chr3.3:46370883-46370902 | MS.gene66192:CDS | 40.0% | |
| TCCGTGCAAATGATAAGTGT+TGG | - | chr3.3:46371969-46371988 | MS.gene66192:intron | 40.0% | |
| TCTGATGGGGATAATTTGGT+AGG | - | chr3.3:46371194-46371213 | MS.gene66192:intron | 40.0% | |
| TTAACTGTTATTCCACTGGC+GGG | - | chr3.3:46371490-46371509 | MS.gene66192:intron | 40.0% | |
| TTCATCACTGCTACACGAAT+TGG | + | chr3.3:46370715-46370734 | None:intergenic | 40.0% | |
| ! | GCATCCACTTAGGATTTGTT+TGG | - | chr3.3:46371037-46371056 | MS.gene66192:CDS | 40.0% |
| ! | GTATGGTTTGGGTAGGAAAA+AGG | - | chr3.3:46371930-46371949 | MS.gene66192:intron | 40.0% |
| ! | GTGTACTGTTTTGCAAGTCA+AGG | - | chr3.3:46371518-46371537 | MS.gene66192:intron | 40.0% |
| ! | TGACTTGCAAAACAGTACAC+TGG | + | chr3.3:46371518-46371537 | None:intergenic | 40.0% |
| ! | TTACATGGACTACGTTATGG+AGG | - | chr3.3:46372734-46372753 | MS.gene66192:CDS | 40.0% |
| ! | TTCTGGCGCTAGTCTATATA+TGG | - | chr3.3:46372320-46372339 | MS.gene66192:intron | 40.0% |
| !! | GAAGATTCTAGAATCAAGGG+AGG | - | chr3.3:46371086-46371105 | MS.gene66192:CDS | 40.0% |
| !! | GATGCTCCATTTGTTTCTGA+TGG | - | chr3.3:46371179-46371198 | MS.gene66192:intron | 40.0% |
| !! | TAGCTCAATGGAAGCATTAC+TGG | - | chr3.3:46372458-46372477 | MS.gene66192:intron | 40.0% |
| !! | TGCTCCATTTGTTTCTGATG+GGG | - | chr3.3:46371181-46371200 | MS.gene66192:intron | 40.0% |
| !!! | GGAGCGCAAATCTTTGTTTT+TGG | - | chr3.3:46371215-46371234 | MS.gene66192:intron | 40.0% |
| AACATTACTTAGCGCCTGGA+AGG | + | chr3.3:46372089-46372108 | None:intergenic | 45.0% | |
| ACATTCAGCATTGTGCCAAC+AGG | - | chr3.3:46370950-46370969 | MS.gene66192:CDS | 45.0% | |
| ACCTAGGGCAAAAGAATCAC+TGG | + | chr3.3:46371880-46371899 | None:intergenic | 45.0% | |
| AGACAACATTACTTAGCGCC+TGG | + | chr3.3:46372093-46372112 | None:intergenic | 45.0% | |
| AGGAAAAAATTCGCACACCC+AGG | + | chr3.3:46372656-46372675 | None:intergenic | 45.0% | |
| AGGAAGTCTTCCCATGCATA+TGG | - | chr3.3:46372781-46372800 | MS.gene66192:CDS | 45.0% | |
| ATCACATCCTTCGTATGCAC+GGG | + | chr3.3:46372537-46372556 | None:intergenic | 45.0% | |
| ATGAAGGCAGGTGTAATGCT+TGG | - | chr3.3:46372555-46372574 | MS.gene66192:CDS | 45.0% | |
| CAGGAACAAGAACAGCGAAT+AGG | + | chr3.3:46371018-46371037 | None:intergenic | 45.0% | |
| CATCACATCCTTCGTATGCA+CGG | + | chr3.3:46372538-46372557 | None:intergenic | 45.0% | |
| GCATACGAAGGATGTGATGA+AGG | - | chr3.3:46372539-46372558 | MS.gene66192:CDS | 45.0% | |
| TAACTGTTATTCCACTGGCG+GGG | - | chr3.3:46371491-46371510 | MS.gene66192:intron | 45.0% | |
| TACGTACAGTGAAAACGTGC+AGG | - | chr3.3:46371395-46371414 | MS.gene66192:intron | 45.0% | |
| TCTTGTTCCTGCATCCACTT+AGG | - | chr3.3:46371027-46371046 | MS.gene66192:CDS | 45.0% | |
| TGGTCCACATACACACTAGA+TGG | + | chr3.3:46371860-46371879 | None:intergenic | 45.0% | |
| TTCATATTAGCACGCCTTCC+AGG | - | chr3.3:46372072-46372091 | MS.gene66192:CDS | 45.0% | |
| TTGCTCAGTTCAAGTCTCAG+GGG | - | chr3.3:46370885-46370904 | MS.gene66192:CDS | 45.0% | |
| TTGTGCCAACAGGTGCAATA+AGG | - | chr3.3:46370960-46370979 | MS.gene66192:CDS | 45.0% | |
| ! | AAAAGCGGCCTTTGAAGATG+TGG | - | chr3.3:46372374-46372393 | MS.gene66192:intron | 45.0% |
| ! | ACCAGTGATTCTTTTGCCCT+AGG | - | chr3.3:46371876-46371895 | MS.gene66192:intron | 45.0% |
| ! | GCTACACGAATTGGAGCATT+AGG | + | chr3.3:46370706-46370725 | None:intergenic | 45.0% |
| ! | GGACTTGAACACGCTATTTC+TGG | - | chr3.3:46372303-46372322 | MS.gene66192:intron | 45.0% |
| ! | GGCTTACATGGACTACGTTA+TGG | - | chr3.3:46372731-46372750 | MS.gene66192:CDS | 45.0% |
| ! | GGTGAAGCCTGATGATGATT+TGG | - | chr3.3:46372341-46372360 | MS.gene66192:intron | 45.0% |
| !! | TGCAAGTTGGCTAGCTTCAA+GGG | + | chr3.3:46372628-46372647 | None:intergenic | 45.0% |
| ACGAAGGATGTGATGAAGGC+AGG | - | chr3.3:46372543-46372562 | MS.gene66192:CDS | 50.0% | |
| AGCCAACTTGCAGATGACCT+GGG | - | chr3.3:46372636-46372655 | MS.gene66192:intron | 50.0% | |
| GGATTACATGGACGGCATCA+AGG | - | chr3.3:46372710-46372729 | MS.gene66192:CDS | 50.0% | |
| GGCATCTACACCTAGCTCAA+TGG | - | chr3.3:46372446-46372465 | MS.gene66192:intron | 50.0% | |
| TAGCCAACTTGCAGATGACC+TGG | - | chr3.3:46372635-46372654 | MS.gene66192:intron | 50.0% | |
| TATAGGTCCCGTGCATACGA+AGG | - | chr3.3:46372527-46372546 | MS.gene66192:CDS | 50.0% | |
| TTAGGACATGCTTTCCAGCG+AGG | + | chr3.3:46370688-46370707 | None:intergenic | 50.0% | |
| TTGAGAGGGATCGACAGTAG+TGG | - | chr3.3:46372405-46372424 | MS.gene66192:intron | 50.0% | |
| TTGAGCTAGGTGTAGATGCC+TGG | + | chr3.3:46372446-46372465 | None:intergenic | 50.0% | |
| !! | CTGCAAGTTGGCTAGCTTCA+AGG | + | chr3.3:46372629-46372648 | None:intergenic | 50.0% |
| !! | TGGTGATGGCGTTTATGTCC+AGG | - | chr3.3:46372425-46372444 | MS.gene66192:intron | 50.0% |
| CACCCAGGTCATCTGCAAGT+TGG | + | chr3.3:46372641-46372660 | None:intergenic | 55.0% | |
| GGACGGCATCAAGGCTTACA+TGG | - | chr3.3:46372719-46372738 | MS.gene66192:CDS | 55.0% | |
| GGGATCGACAGTAGTGGTGA+TGG | - | chr3.3:46372411-46372430 | MS.gene66192:intron | 55.0% | |
| GGGCATCAAGATCATTGCCC+AGG | - | chr3.3:46372159-46372178 | MS.gene66192:intron | 55.0% | |
| AGTACACTGGTCCCCGCCAG+TGG | + | chr3.3:46371505-46371524 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 46370679 | 46372806 | 46370679 | ID=MS.gene66192 |
| chr3.3 | mRNA | 46370679 | 46372806 | 46370679 | ID=MS.gene66192.t1;Parent=MS.gene66192 |
| chr3.3 | exon | 46372705 | 46372806 | 46372705 | ID=MS.gene66192.t1.exon1;Parent=MS.gene66192.t1 |
| chr3.3 | CDS | 46372705 | 46372806 | 46372705 | ID=cds.MS.gene66192.t1;Parent=MS.gene66192.t1 |
| chr3.3 | exon | 46372504 | 46372604 | 46372504 | ID=MS.gene66192.t1.exon2;Parent=MS.gene66192.t1 |
| chr3.3 | CDS | 46372504 | 46372604 | 46372504 | ID=cds.MS.gene66192.t1;Parent=MS.gene66192.t1 |
| chr3.3 | exon | 46372378 | 46372408 | 46372378 | ID=MS.gene66192.t1.exon3;Parent=MS.gene66192.t1 |
| chr3.3 | CDS | 46372378 | 46372408 | 46372378 | ID=cds.MS.gene66192.t1;Parent=MS.gene66192.t1 |
| chr3.3 | exon | 46372069 | 46372119 | 46372069 | ID=MS.gene66192.t1.exon4;Parent=MS.gene66192.t1 |
| chr3.3 | CDS | 46372069 | 46372119 | 46372069 | ID=cds.MS.gene66192.t1;Parent=MS.gene66192.t1 |
| chr3.3 | exon | 46371716 | 46371781 | 46371716 | ID=MS.gene66192.t1.exon5;Parent=MS.gene66192.t1 |
| chr3.3 | CDS | 46371716 | 46371781 | 46371716 | ID=cds.MS.gene66192.t1;Parent=MS.gene66192.t1 |
| chr3.3 | exon | 46371305 | 46371364 | 46371305 | ID=MS.gene66192.t1.exon6;Parent=MS.gene66192.t1 |
| chr3.3 | CDS | 46371305 | 46371364 | 46371305 | ID=cds.MS.gene66192.t1;Parent=MS.gene66192.t1 |
| chr3.3 | exon | 46370679 | 46371182 | 46370679 | ID=MS.gene66192.t1.exon7;Parent=MS.gene66192.t1 |
| chr3.3 | CDS | 46370679 | 46371182 | 46370679 | ID=cds.MS.gene66192.t1;Parent=MS.gene66192.t1 |
| Gene Sequence |
| Protein sequence |
