Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66414.t1 | ABD32667.1 | 49.2 | 193 | 67 | 2 | 58 | 246 | 42 | 207 | 9.10E-37 | 164.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66414.t1 | Q9CA59 | 38.4 | 164 | 92 | 4 | 86 | 245 | 69 | 227 | 5.4e-22 | 106.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66414.t1 | Q2HTG4 | 49.2 | 193 | 67 | 2 | 58 | 246 | 42 | 207 | 6.6e-37 | 164.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049254 | MS.gene66414 | 0.802247 | 6.14E-49 | -1.69E-46 |
| MS.gene049412 | MS.gene66414 | 0.804643 | 1.96E-49 | -1.69E-46 |
| MS.gene050237 | MS.gene66414 | 0.812967 | 3.25E-51 | -1.69E-46 |
| MS.gene052037 | MS.gene66414 | 0.809462 | 1.87E-50 | -1.69E-46 |
| MS.gene052056 | MS.gene66414 | -0.801564 | 8.48E-49 | -1.69E-46 |
| MS.gene052447 | MS.gene66414 | 0.800096 | 1.69E-48 | -1.69E-46 |
| MS.gene053201 | MS.gene66414 | 0.808209 | 3.47E-50 | -1.69E-46 |
| MS.gene05415 | MS.gene66414 | 0.814572 | 1.44E-51 | -1.69E-46 |
| MS.gene055227 | MS.gene66414 | 0.800411 | 1.46E-48 | -1.69E-46 |
| MS.gene055818 | MS.gene66414 | 0.805834 | 1.10E-49 | -1.69E-46 |
| MS.gene057021 | MS.gene66414 | 0.800407 | 1.46E-48 | -1.69E-46 |
| MS.gene058294 | MS.gene66414 | 0.811054 | 8.48E-51 | -1.69E-46 |
| MS.gene059272 | MS.gene66414 | 0.819496 | 1.13E-52 | -1.69E-46 |
| MS.gene060134 | MS.gene66414 | 0.806585 | 7.66E-50 | -1.69E-46 |
| MS.gene060634 | MS.gene66414 | -0.802841 | 4.63E-49 | -1.69E-46 |
| MS.gene060918 | MS.gene66414 | 0.803462 | 3.45E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66414.t1 | MTR_2g024970 | 48.148 | 216 | 75 | 4 | 48 | 255 | 28 | 214 | 1.09e-52 | 171 |
| MS.gene66414.t1 | MTR_6g090475 | 41.481 | 135 | 69 | 3 | 107 | 232 | 23 | 156 | 1.51e-24 | 96.7 |
| MS.gene66414.t1 | MTR_5g091010 | 41.958 | 143 | 33 | 2 | 46 | 188 | 34 | 126 | 4.17e-24 | 94.4 |
| MS.gene66414.t1 | MTR_3g040400 | 36.478 | 159 | 92 | 4 | 86 | 241 | 67 | 219 | 9.46e-23 | 94.4 |
| MS.gene66414.t1 | MTR_4g108570 | 35.220 | 159 | 94 | 4 | 86 | 241 | 64 | 216 | 2.18e-21 | 90.5 |
| MS.gene66414.t1 | MTR_4g108570 | 35.220 | 159 | 94 | 4 | 86 | 241 | 64 | 216 | 2.69e-21 | 90.5 |
| MS.gene66414.t1 | MTR_0240s0030 | 46.575 | 73 | 39 | 0 | 86 | 158 | 9 | 81 | 2.24e-14 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66414.t1 | AT1G74560 | 38.415 | 164 | 92 | 4 | 86 | 245 | 69 | 227 | 1.50e-26 | 104 |
| MS.gene66414.t1 | AT1G74560 | 36.413 | 184 | 108 | 4 | 86 | 265 | 69 | 247 | 2.52e-24 | 99.0 |
| MS.gene66414.t1 | AT1G18800 | 35.220 | 159 | 96 | 4 | 86 | 241 | 65 | 219 | 9.84e-21 | 89.0 |
Find 57 sgRNAs with CRISPR-Local
Find 113 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGTTACCTTATTGTATTTC+CGG | 0.193543 | 6.3:-82637966 | None:intergenic |
| ATTCTGGTCTAAGGCGTTTA+AGG | 0.206554 | 6.3:+82639154 | MS.gene66414:CDS |
| TCCTCCTCGTCGTTCTCTTC+AGG | 0.243641 | 6.3:-82639422 | None:intergenic |
| TTTCGCGCTTACCTGGATTC+TGG | 0.333322 | 6.3:+82639138 | MS.gene66414:CDS |
| ACGCTTTGAAATGCGTTTGT+TGG | 0.354540 | 6.3:-82639321 | None:intergenic |
| TACAATGCAGATTCAAAATC+AGG | 0.364481 | 6.3:+82639257 | MS.gene66414:CDS |
| TTCAGTGAATTCAAATATGA+TGG | 0.374695 | 6.3:-82639285 | None:intergenic |
| ACTCTTCCCTCTTCGGTGTT+CGG | 0.377800 | 6.3:-82637877 | None:intergenic |
| CTTACCTGGATTCTGGTCTA+AGG | 0.383515 | 6.3:+82639145 | MS.gene66414:CDS |
| TTCTCTTCAGGAACAATGTT+GGG | 0.394116 | 6.3:-82639410 | None:intergenic |
| TTTCCTTTGTCATCGACCTT+AGG | 0.401403 | 6.3:-82637829 | None:intergenic |
| AAACCGCCGGAAATACAATA+AGG | 0.413358 | 6.3:+82637960 | MS.gene66414:CDS |
| TGTCATCAGAATCACCTTGT+AGG | 0.416806 | 6.3:-82639586 | None:intergenic |
| TTCGGTGTTCGGATGTAAAT+CGG | 0.417505 | 6.3:-82637866 | None:intergenic |
| GAACAAATTTCGCGCTTACC+TGG | 0.430789 | 6.3:+82639131 | MS.gene66414:CDS |
| AGGCTATTCCAATCCTTGGT+AGG | 0.466357 | 6.3:+82639174 | MS.gene66414:CDS |
| CCGGATTGGAAAAGTTATAG+TGG | 0.477308 | 6.3:+82639535 | MS.gene66414:CDS |
| TTTAAGGCTATTCCAATCCT+TGG | 0.489030 | 6.3:+82639170 | MS.gene66414:CDS |
| AAGTTATAGTGGAGAAGTTG+TGG | 0.492368 | 6.3:+82639546 | MS.gene66414:CDS |
| TTTAACTCCCTACCAAGGAT+TGG | 0.500203 | 6.3:-82639182 | None:intergenic |
| CACAGATTCTGAAGATGAAG+TGG | 0.506725 | 6.3:+82639607 | MS.gene66414:CDS |
| AGTTATAGTGGAGAAGTTGT+GGG | 0.507373 | 6.3:+82639547 | MS.gene66414:CDS |
| CTACTTCAATAGAATTGAGA+TGG | 0.510628 | 6.3:-82639232 | None:intergenic |
| AACGCCTTAGACCAGAATCC+AGG | 0.516928 | 6.3:-82639149 | None:intergenic |
| CCTTTGTCATCGACCTTAGG+AGG | 0.518162 | 6.3:-82637826 | None:intergenic |
| CAGAATCACCTTGTAGGTGA+TGG | 0.519969 | 6.3:-82639580 | None:intergenic |
| GGCTATTCCAATCCTTGGTA+GGG | 0.522682 | 6.3:+82639175 | MS.gene66414:CDS |
| TTCAAGAACGGAGACCGGAT+TGG | 0.527075 | 6.3:+82639521 | MS.gene66414:CDS |
| AAGACTTCAAGAACGGAGAC+CGG | 0.532266 | 6.3:+82639516 | MS.gene66414:CDS |
| ACTTAGCCTTCAGCCTCCTA+AGG | 0.538381 | 6.3:+82637813 | MS.gene66414:CDS |
| GTTCTCTTCAGGAACAATGT+TGG | 0.541834 | 6.3:-82639411 | None:intergenic |
| GAGGAGACGATTGAAGAAGA+AGG | 0.549967 | 6.3:+82639056 | MS.gene66414:intron |
| TTGTATCTACAAGTATAGAC+TGG | 0.551695 | 6.3:+82639375 | MS.gene66414:CDS |
| TGGAAGTTTCTGAAGAGGGA+AGG | 0.556806 | 6.3:+82637914 | MS.gene66414:CDS |
| GATCCTCTCCATCACCTACA+AGG | 0.557157 | 6.3:+82639572 | MS.gene66414:CDS |
| TTACATCCGAACACCGAAGA+GGG | 0.565718 | 6.3:+82637871 | MS.gene66414:CDS |
| GAAGTCTTCTTTATCACTTG+AGG | 0.570931 | 6.3:-82639501 | None:intergenic |
| GAAACAAAAGAGGAGGATGA+AGG | 0.589583 | 6.3:+82639657 | MS.gene66414:CDS |
| CAAGCATTGTGTTAAGCGCA+AGG | 0.591428 | 6.3:+82639109 | MS.gene66414:CDS |
| GATAAAGAAGACTTCAAGAA+CGG | 0.592638 | 6.3:+82639509 | MS.gene66414:CDS |
| GTGATGGAAGTTTCTGAAGA+GGG | 0.594703 | 6.3:+82637910 | MS.gene66414:CDS |
| GAGGCTGAAGGCTAAGTCGA+TGG | 0.595628 | 6.3:-82637807 | None:intergenic |
| AGTGATGGAAGTTTCTGAAG+AGG | 0.596626 | 6.3:+82637909 | MS.gene66414:CDS |
| AAGACGATGAGAAACAAAAG+AGG | 0.609255 | 6.3:+82639647 | MS.gene66414:CDS |
| CAGCGATGATGCAAAACCGC+CGG | 0.612239 | 6.3:+82637947 | MS.gene66414:CDS |
| CCTCCTAAGGTCGATGACAA+AGG | 0.616102 | 6.3:+82637826 | MS.gene66414:CDS |
| CATCGACCTTAGGAGGCTGA+AGG | 0.622683 | 6.3:-82637819 | None:intergenic |
| TAAGGTCGATGACAAAGGAA+AGG | 0.624536 | 6.3:+82637831 | MS.gene66414:CDS |
| TTACCTTATTGTATTTCCGG+CGG | 0.635673 | 6.3:-82637963 | None:intergenic |
| TCACCTTGTAGGTGATGGAG+AGG | 0.640297 | 6.3:-82639575 | None:intergenic |
| TTTACATCCGAACACCGAAG+AGG | 0.645744 | 6.3:+82637870 | MS.gene66414:CDS |
| TCCTGAAGAGAACGACGAGG+AGG | 0.650913 | 6.3:+82639421 | MS.gene66414:CDS |
| ACGATGAGAAACAAAAGAGG+AGG | 0.659988 | 6.3:+82639650 | MS.gene66414:CDS |
| TGGCATTTAACTCCCTACCA+AGG | 0.660277 | 6.3:-82639187 | None:intergenic |
| GGTCGATGACAAAGGAAAGG+AGG | 0.674406 | 6.3:+82637834 | MS.gene66414:CDS |
| AAGCGTTATAACATGCACGA+CGG | 0.763292 | 6.3:+82639338 | MS.gene66414:CDS |
| TGTTCCTGAAGAGAACGACG+AGG | 0.779029 | 6.3:+82639418 | MS.gene66414:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAGTTGTATTATTTAACAT+GGG | - | chr6.3:82638943-82638962 | None:intergenic | 15.0% |
| !! | ATGTTAAATAATACAACTTT+AGG | + | chr6.3:82638943-82638962 | MS.gene66414:intron | 15.0% |
| !! | TAAAGTTGTATTATTTAACA+TGG | - | chr6.3:82638944-82638963 | None:intergenic | 15.0% |
| !! | TAACTTAAATAAAACTATGA+AGG | + | chr6.3:82638422-82638441 | MS.gene66414:intron | 15.0% |
| !!! | AAAAAGTTAATATCTTTTGA+AGG | - | chr6.3:82638599-82638618 | None:intergenic | 15.0% |
| !!! | ATATTTTATATATATCGAGC+TGG | + | chr6.3:82638743-82638762 | MS.gene66414:intron | 20.0% |
| !!! | TAATTATGTACTTTTCTCAT+AGG | - | chr6.3:82638673-82638692 | None:intergenic | 20.0% |
| ! | AAACCAATTGAAAAAACTGT+AGG | - | chr6.3:82639477-82639496 | None:intergenic | 25.0% |
| ! | ACGATAATTGTAATGATAGA+AGG | - | chr6.3:82638623-82638642 | None:intergenic | 25.0% |
| ! | ATAAAACTATGAAGGTAGAA+AGG | + | chr6.3:82638430-82638449 | MS.gene66414:intron | 25.0% |
| ! | ATGTTACCTTATTGTATTTC+CGG | - | chr6.3:82637969-82637988 | None:intergenic | 25.0% |
| ! | GAGATGGTTATCAAAAATAA+TGG | - | chr6.3:82639219-82639238 | None:intergenic | 25.0% |
| ! | TCTTAGGGTTCAATAAAATA+AGG | - | chr6.3:82638106-82638125 | None:intergenic | 25.0% |
| ! | TGTATTATTTAACATGGGTA+GGG | - | chr6.3:82638938-82638957 | None:intergenic | 25.0% |
| ! | TTCAGTGAATTCAAATATGA+TGG | - | chr6.3:82639288-82639307 | None:intergenic | 25.0% |
| ! | TTGTATTATTTAACATGGGT+AGG | - | chr6.3:82638939-82638958 | None:intergenic | 25.0% |
| !! | ATCAAAAATAATGGAATCTG+TGG | - | chr6.3:82639210-82639229 | None:intergenic | 25.0% |
| !! | TAAGAGTGTATATATAAGAG+AGG | - | chr6.3:82638514-82638533 | None:intergenic | 25.0% |
| !!! | TCAAGTGTTTATTTTATTGC+TGG | + | chr6.3:82638012-82638031 | MS.gene66414:intron | 25.0% |
| CTACTTCAATAGAATTGAGA+TGG | - | chr6.3:82639235-82639254 | None:intergenic | 30.0% | |
| GATAAAGAAGACTTCAAGAA+CGG | + | chr6.3:82639509-82639528 | MS.gene66414:CDS | 30.0% | |
| GATGAGTACAATGTAAAACA+TGG | - | chr6.3:82638483-82638502 | None:intergenic | 30.0% | |
| GTCTTAAGGTTCTTATCTTA+GGG | - | chr6.3:82638121-82638140 | None:intergenic | 30.0% | |
| TACAATGCAGATTCAAAATC+AGG | + | chr6.3:82639257-82639276 | MS.gene66414:CDS | 30.0% | |
| TAGGGTTCAATAAAATAAGG+AGG | - | chr6.3:82638103-82638122 | None:intergenic | 30.0% | |
| TTGTATCTACAAGTATAGAC+TGG | + | chr6.3:82639375-82639394 | MS.gene66414:CDS | 30.0% | |
| ! | TTTAAAGTTCACGAACAACT+CGG | + | chr6.3:82638269-82638288 | MS.gene66414:intron | 30.0% |
| !! | GATAATTGATTCGTTGAACT+TGG | - | chr6.3:82638869-82638888 | None:intergenic | 30.0% |
| !!! | AAGAGTTTTTGAAACAGTGA+TGG | + | chr6.3:82637894-82637913 | MS.gene66414:CDS | 30.0% |
| !!! | ATTATTTTAGACTATCCGAG+AGG | + | chr6.3:82639037-82639056 | MS.gene66414:intron | 30.0% |
| AACCTTAAGACCCATGTTTA+GGG | + | chr6.3:82638130-82638149 | MS.gene66414:intron | 35.0% | |
| AAGACGATGAGAAACAAAAG+AGG | + | chr6.3:82639647-82639666 | MS.gene66414:CDS | 35.0% | |
| CCAATTGAAAAAACTGTAGG+AGG | - | chr6.3:82639474-82639493 | None:intergenic | 35.0% | |
| GAAGTCTTCTTTATCACTTG+AGG | - | chr6.3:82639504-82639523 | None:intergenic | 35.0% | |
| GAGTGTATATATAAGAGAGG+TGG | - | chr6.3:82638511-82638530 | None:intergenic | 35.0% | |
| GGTCTTAAGGTTCTTATCTT+AGG | - | chr6.3:82638122-82638141 | None:intergenic | 35.0% | |
| TTACCTTATTGTATTTCCGG+CGG | - | chr6.3:82637966-82637985 | None:intergenic | 35.0% | |
| TTCAAAAACTCTTCCCTCTT+CGG | - | chr6.3:82637887-82637906 | None:intergenic | 35.0% | |
| TTCTCTTCAGGAACAATGTT+GGG | - | chr6.3:82639413-82639432 | None:intergenic | 35.0% | |
| ! | AAGTTATAGTGGAGAAGTTG+TGG | + | chr6.3:82639546-82639565 | MS.gene66414:CDS | 35.0% |
| ! | AGTTATAGTGGAGAAGTTGT+GGG | + | chr6.3:82639547-82639566 | MS.gene66414:CDS | 35.0% |
| ! | ATTTTCAAAACACCCGATGT+GGG | + | chr6.3:82638543-82638562 | MS.gene66414:intron | 35.0% |
| ! | CCACTATAACTTTTCCAATC+CGG | - | chr6.3:82639538-82639557 | None:intergenic | 35.0% |
| ! | TATTTTCAAAACACCCGATG+TGG | + | chr6.3:82638542-82638561 | MS.gene66414:intron | 35.0% |
| ! | TTTAAGGCTATTCCAATCCT+TGG | + | chr6.3:82639170-82639189 | MS.gene66414:CDS | 35.0% |
| !! | CACAATGCTTGCTTAGTTTT+CGG | - | chr6.3:82639100-82639119 | None:intergenic | 35.0% |
| !!! | ACCTTTTTTTAGCTCGAGTT+CGG | + | chr6.3:82638242-82638261 | MS.gene66414:intron | 35.0% |
| !!! | CCTCCTACAGTTTTTTCAAT+TGG | + | chr6.3:82639471-82639490 | MS.gene66414:CDS | 35.0% |
| !!! | GAACTATTTTCGAGTTGGTT+CGG | + | chr6.3:82638901-82638920 | MS.gene66414:intron | 35.0% |
| AAACCGCCGGAAATACAATA+AGG | + | chr6.3:82637960-82637979 | MS.gene66414:CDS | 40.0% | |
| AAGCGTTATAACATGCACGA+CGG | + | chr6.3:82639338-82639357 | MS.gene66414:CDS | 40.0% | |
| ACGATGAGAAACAAAAGAGG+AGG | + | chr6.3:82639650-82639669 | MS.gene66414:CDS | 40.0% | |
| CAACTCAAGTTCGACTCATT+TGG | + | chr6.3:82638795-82638814 | MS.gene66414:intron | 40.0% | |
| GAACCTTAAGACCCATGTTT+AGG | + | chr6.3:82638129-82638148 | MS.gene66414:intron | 40.0% | |
| GTACACAAATAGTCCCACAT+CGG | - | chr6.3:82638559-82638578 | None:intergenic | 40.0% | |
| GTTCTCTTCAGGAACAATGT+TGG | - | chr6.3:82639414-82639433 | None:intergenic | 40.0% | |
| TAAGGTCGATGACAAAGGAA+AGG | + | chr6.3:82637831-82637850 | MS.gene66414:CDS | 40.0% | |
| TACACAAATAGTCCCACATC+GGG | - | chr6.3:82638558-82638577 | None:intergenic | 40.0% | |
| TCATTTCCAGCCCTAAACAT+GGG | - | chr6.3:82638143-82638162 | None:intergenic | 40.0% | |
| TGAGTATGGTTCAACTCGTT+TGG | - | chr6.3:82638777-82638796 | None:intergenic | 40.0% | |
| TGTCATCAGAATCACCTTGT+AGG | - | chr6.3:82639589-82639608 | None:intergenic | 40.0% | |
| TTTAACTCCCTACCAAGGAT+TGG | - | chr6.3:82639185-82639204 | None:intergenic | 40.0% | |
| TTTCCTTTGTCATCGACCTT+AGG | - | chr6.3:82637832-82637851 | None:intergenic | 40.0% | |
| ! | AGTGATGGAAGTTTCTGAAG+AGG | + | chr6.3:82637909-82637928 | MS.gene66414:CDS | 40.0% |
| ! | ATTCTGGTCTAAGGCGTTTA+AGG | + | chr6.3:82639154-82639173 | MS.gene66414:CDS | 40.0% |
| ! | CACAGATTCTGAAGATGAAG+TGG | + | chr6.3:82639607-82639626 | MS.gene66414:CDS | 40.0% |
| ! | CCGGATTGGAAAAGTTATAG+TGG | + | chr6.3:82639535-82639554 | MS.gene66414:CDS | 40.0% |
| ! | GTGATGGAAGTTTCTGAAGA+GGG | + | chr6.3:82637910-82637929 | MS.gene66414:CDS | 40.0% |
| !! | ACGCTTTGAAATGCGTTTGT+TGG | - | chr6.3:82639324-82639343 | None:intergenic | 40.0% |
| !! | AGTCGAACTTGAGTTGAGTA+TGG | - | chr6.3:82638791-82638810 | None:intergenic | 40.0% |
| !! | TCGTGTGTGTACTGTTTTGA+AGG | + | chr6.3:82638970-82638989 | MS.gene66414:intron | 40.0% |
| !! | TTCGGTGTTCGGATGTAAAT+CGG | - | chr6.3:82637869-82637888 | None:intergenic | 40.0% |
| !!! | GTCTCGAACTATTTTCGAGT+TGG | + | chr6.3:82638896-82638915 | MS.gene66414:intron | 40.0% |
| AAGACTTCAAGAACGGAGAC+CGG | + | chr6.3:82639516-82639535 | MS.gene66414:CDS | 45.0% | |
| AGCCCTAAACATGGGTCTTA+AGG | - | chr6.3:82638135-82638154 | None:intergenic | 45.0% | |
| AGGCTATTCCAATCCTTGGT+AGG | + | chr6.3:82639174-82639193 | MS.gene66414:CDS | 45.0% | |
| CAGAATCACCTTGTAGGTGA+TGG | - | chr6.3:82639583-82639602 | None:intergenic | 45.0% | |
| CGACTCGATAAGAATTGGCT+CGG | + | chr6.3:82638191-82638210 | MS.gene66414:intron | 45.0% | |
| CTCATTTCCAGCCCTAAACA+TGG | - | chr6.3:82638144-82638163 | None:intergenic | 45.0% | |
| CTTACCTGGATTCTGGTCTA+AGG | + | chr6.3:82639145-82639164 | MS.gene66414:CDS | 45.0% | |
| CTTCTTCAATCGTCTCCTCT+CGG | - | chr6.3:82639055-82639074 | None:intergenic | 45.0% | |
| GAACAAATTTCGCGCTTACC+TGG | + | chr6.3:82639131-82639150 | MS.gene66414:CDS | 45.0% | |
| GAGGAGACGATTGAAGAAGA+AGG | + | chr6.3:82639056-82639075 | MS.gene66414:intron | 45.0% | |
| GCCGAACTCGAGCTAAAAAA+AGG | - | chr6.3:82638246-82638265 | None:intergenic | 45.0% | |
| GGCTATTCCAATCCTTGGTA+GGG | + | chr6.3:82639175-82639194 | MS.gene66414:CDS | 45.0% | |
| TGGCATTTAACTCCCTACCA+AGG | - | chr6.3:82639190-82639209 | None:intergenic | 45.0% | |
| TTACATCCGAACACCGAAGA+GGG | + | chr6.3:82637871-82637890 | MS.gene66414:CDS | 45.0% | |
| TTTACATCCGAACACCGAAG+AGG | + | chr6.3:82637870-82637889 | MS.gene66414:CDS | 45.0% | |
| ! | ACGAACAACTCGGTTTGACT+CGG | + | chr6.3:82638279-82638298 | MS.gene66414:intron | 45.0% |
| ! | CAAGCATTGTGTTAAGCGCA+AGG | + | chr6.3:82639109-82639128 | MS.gene66414:CDS | 45.0% |
| ! | GAGCTCGACTCGATAAGAAT+TGG | + | chr6.3:82638186-82638205 | MS.gene66414:intron | 45.0% |
| ! | TGGAAGTTTCTGAAGAGGGA+AGG | + | chr6.3:82637914-82637933 | MS.gene66414:CDS | 45.0% |
| ! | TTAAGACCCATGTTTAGGGC+TGG | + | chr6.3:82638134-82638153 | MS.gene66414:intron | 45.0% |
| !!! | ATATCAATTTTTTTTTTAAA+AGG | + | chr6.3:82637987-82638006 | MS.gene66414:intron | 5.0% |
| AACGCCTTAGACCAGAATCC+AGG | - | chr6.3:82639152-82639171 | None:intergenic | 50.0% | |
| CCTCCTAAGGTCGATGACAA+AGG | + | chr6.3:82637826-82637845 | MS.gene66414:CDS | 50.0% | |
| CCTTTGTCATCGACCTTAGG+AGG | - | chr6.3:82637829-82637848 | None:intergenic | 50.0% | |
| GATCCTCTCCATCACCTACA+AGG | + | chr6.3:82639572-82639591 | MS.gene66414:CDS | 50.0% | |
| GGTCGATGACAAAGGAAAGG+AGG | + | chr6.3:82637834-82637853 | MS.gene66414:CDS | 50.0% | |
| TGTTCCTGAAGAGAACGACG+AGG | + | chr6.3:82639418-82639437 | MS.gene66414:CDS | 50.0% | |
| TTATCGAGTCGAGCTCAGAC+AGG | - | chr6.3:82638182-82638201 | None:intergenic | 50.0% | |
| TTCAAGAACGGAGACCGGAT+TGG | + | chr6.3:82639521-82639540 | MS.gene66414:CDS | 50.0% | |
| TTTCGCGCTTACCTGGATTC+TGG | + | chr6.3:82639138-82639157 | MS.gene66414:CDS | 50.0% | |
| ! | ACTTAGCCTTCAGCCTCCTA+AGG | + | chr6.3:82637813-82637832 | MS.gene66414:CDS | 50.0% |
| !! | ACAACTCGGTTTGACTCGGT+AGG | + | chr6.3:82638283-82638302 | MS.gene66414:intron | 50.0% |
| !! | ACTCTTCCCTCTTCGGTGTT+CGG | - | chr6.3:82637880-82637899 | None:intergenic | 50.0% |
| !! | TCACCTTGTAGGTGATGGAG+AGG | - | chr6.3:82639578-82639597 | None:intergenic | 50.0% |
| CAGCGATGATGCAAAACCGC+CGG | + | chr6.3:82637947-82637966 | MS.gene66414:CDS | 55.0% | |
| CATCGACCTTAGGAGGCTGA+AGG | - | chr6.3:82637822-82637841 | None:intergenic | 55.0% | |
| GAGGCTGAAGGCTAAGTCGA+TGG | - | chr6.3:82637810-82637829 | None:intergenic | 55.0% | |
| TCCTCCTCGTCGTTCTCTTC+AGG | - | chr6.3:82639425-82639444 | None:intergenic | 55.0% | |
| TCCTGAAGAGAACGACGAGG+AGG | + | chr6.3:82639421-82639440 | MS.gene66414:CDS | 55.0% | |
| ! | TCGGCTTGAAACTCGACTCG+AGG | + | chr6.3:82638210-82638229 | MS.gene66414:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.3 | gene | 82637790 | 82639676 | 82637790 | ID=MS.gene66414 |
| chr6.3 | mRNA | 82637790 | 82639676 | 82637790 | ID=MS.gene66414.t1;Parent=MS.gene66414 |
| chr6.3 | exon | 82637790 | 82637981 | 82637790 | ID=MS.gene66414.t1.exon1;Parent=MS.gene66414.t1 |
| chr6.3 | CDS | 82637790 | 82637981 | 82637790 | ID=cds.MS.gene66414.t1;Parent=MS.gene66414.t1 |
| chr6.3 | exon | 82639059 | 82639676 | 82639059 | ID=MS.gene66414.t1.exon2;Parent=MS.gene66414.t1 |
| chr6.3 | CDS | 82639059 | 82639676 | 82639059 | ID=cds.MS.gene66414.t1;Parent=MS.gene66414.t1 |
| Gene Sequence |
| Protein sequence |
