Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66477.t1 | RHN46376.1 | 53 | 117 | 7 | 2 | 9 | 77 | 19 | 135 | 1.90E-17 | 100.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66477.t1 | A0A396GZ16 | 53.0 | 117 | 7 | 2 | 9 | 77 | 19 | 135 | 1.4e-17 | 100.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049378 | MS.gene66477 | 0.805553 | 1.26E-49 | -1.69E-46 |
| MS.gene049822 | MS.gene66477 | 0.809161 | 2.17E-50 | -1.69E-46 |
| MS.gene050114 | MS.gene66477 | 0.805184 | 1.51E-49 | -1.69E-46 |
| MS.gene051210 | MS.gene66477 | 0.812829 | 3.48E-51 | -1.69E-46 |
| MS.gene051935 | MS.gene66477 | 0.802861 | 4.59E-49 | -1.69E-46 |
| MS.gene052384 | MS.gene66477 | 0.808209 | 3.46E-50 | -1.69E-46 |
| MS.gene052434 | MS.gene66477 | 0.81808 | 2.36E-52 | -1.69E-46 |
| MS.gene053381 | MS.gene66477 | 0.803114 | 4.07E-49 | -1.69E-46 |
| MS.gene054479 | MS.gene66477 | 0.836174 | 1.09E-56 | -1.69E-46 |
| MS.gene055311 | MS.gene66477 | 0.80272 | 4.91E-49 | -1.69E-46 |
| MS.gene055313 | MS.gene66477 | 0.810943 | 8.97E-51 | -1.69E-46 |
| MS.gene055603 | MS.gene66477 | 0.808904 | 2.46E-50 | -1.69E-46 |
| MS.gene056552 | MS.gene66477 | 0.804736 | 1.87E-49 | -1.69E-46 |
| MS.gene057055 | MS.gene66477 | 0.81313 | 2.99E-51 | -1.69E-46 |
| MS.gene057360 | MS.gene66477 | 0.801737 | 7.82E-49 | -1.69E-46 |
| MS.gene058399 | MS.gene66477 | 0.812234 | 4.70E-51 | -1.69E-46 |
| MS.gene059725 | MS.gene66477 | 0.821922 | 3.12E-53 | -1.69E-46 |
| MS.gene06010 | MS.gene66477 | 0.805844 | 1.10E-49 | -1.69E-46 |
| MS.gene060683 | MS.gene66477 | 0.814801 | 1.28E-51 | -1.69E-46 |
| MS.gene060685 | MS.gene66477 | 0.806676 | 7.33E-50 | -1.69E-46 |
| MS.gene060869 | MS.gene66477 | 0.802438 | 5.61E-49 | -1.69E-46 |
| MS.gene060870 | MS.gene66477 | 0.800337 | 1.51E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66477.t1 | MTR_4g087040 | 82.877 | 146 | 23 | 1 | 83 | 226 | 2229 | 2374 | 4.47e-69 | 233 |
| MS.gene66477.t1 | MTR_4g006760 | 92.857 | 56 | 4 | 0 | 215 | 270 | 288 | 343 | 6.11e-25 | 105 |
| MS.gene66477.t1 | MTR_4g131350 | 92.857 | 56 | 4 | 0 | 215 | 270 | 343 | 398 | 7.33e-25 | 105 |
| MS.gene66477.t1 | MTR_4g125920 | 92.857 | 56 | 4 | 0 | 215 | 270 | 290 | 345 | 1.04e-24 | 104 |
| MS.gene66477.t1 | MTR_4g131310 | 94.444 | 54 | 3 | 0 | 217 | 270 | 274 | 327 | 1.47e-24 | 103 |
| MS.gene66477.t1 | MTR_4g123730 | 35.912 | 181 | 99 | 6 | 91 | 256 | 1749 | 1927 | 8.13e-16 | 78.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66477.t1 | AT3G19050 | 51.799 | 139 | 65 | 1 | 90 | 226 | 2248 | 2386 | 6.12e-35 | 135 |
| MS.gene66477.t1 | AT3G17360 | 35.570 | 149 | 85 | 2 | 91 | 228 | 1655 | 1803 | 7.52e-16 | 79.0 |
| MS.gene66477.t1 | AT3G17360 | 35.570 | 149 | 85 | 2 | 91 | 228 | 1646 | 1794 | 7.66e-16 | 79.0 |
| MS.gene66477.t1 | AT3G17360 | 35.570 | 149 | 85 | 2 | 91 | 228 | 1654 | 1802 | 7.95e-16 | 79.0 |
| MS.gene66477.t1 | AT1G80790 | 37.209 | 129 | 70 | 3 | 174 | 292 | 247 | 374 | 1.84e-13 | 70.9 |
| MS.gene66477.t1 | AT1G80790 | 37.209 | 129 | 70 | 3 | 174 | 292 | 247 | 374 | 3.03e-13 | 70.5 |
| MS.gene66477.t1 | AT1G80790 | 37.209 | 129 | 70 | 3 | 174 | 292 | 247 | 374 | 3.03e-13 | 70.5 |
| MS.gene66477.t1 | AT3G09080 | 77.143 | 35 | 8 | 0 | 11 | 45 | 218 | 252 | 5.00e-11 | 63.9 |
Find 45 sgRNAs with CRISPR-Local
Find 163 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAGAACCTGTATGTGATTT+TGG | 0.118590 | 1.4:-5152965 | None:intergenic |
| TTAATACCTCACGCTTATTT+AGG | 0.249515 | 1.4:-5153458 | None:intergenic |
| TGTCAGGTTGACTTCATTAA+AGG | 0.254084 | 1.4:+5152703 | MS.gene66477:intron |
| ATTGCTTTCTAGTACATTTA+CGG | 0.290447 | 1.4:-5152607 | None:intergenic |
| AACCTCTGCTTCCCTGTCTT+CGG | 0.363496 | 1.4:-5152547 | None:intergenic |
| TGAGGAGGTACGAAGGATAT+TGG | 0.370766 | 1.4:+5153368 | MS.gene66477:CDS |
| TCAGATTACACATTGTTTGC+AGG | 0.376381 | 1.4:+5151709 | MS.gene66477:CDS |
| GTTCGATAGCTTTCAATTCA+AGG | 0.390519 | 1.4:+5154619 | MS.gene66477:CDS |
| AAAGAAACCTACTTTAGATA+TGG | 0.414269 | 1.4:-5154667 | None:intergenic |
| GGCTGCACATACAACAATTC+CGG | 0.429677 | 1.4:-5154586 | None:intergenic |
| CTTATTTAGGTCTCTGCTCC+AGG | 0.431017 | 1.4:-5153445 | None:intergenic |
| AGAGCTAAATTTGCATGCTA+AGG | 0.438832 | 1.4:+5153129 | MS.gene66477:CDS |
| TGAGAGATCTGTTGAAGAGC+TGG | 0.451898 | 1.4:+5152578 | MS.gene66477:CDS |
| TTTGAAGGTTGTATATATGA+AGG | 0.455359 | 1.4:-5151684 | None:intergenic |
| TCACTTGCTGTTAGTTCAGA+TGG | 0.458765 | 1.4:+5151628 | MS.gene66477:CDS |
| CTTTGTACAGTTTGTAGAGA+TGG | 0.459588 | 1.4:+5152259 | MS.gene66477:CDS |
| AAATTTGCATGCTAAGGAAC+AGG | 0.460869 | 1.4:+5153135 | MS.gene66477:CDS |
| CAAGTGATCGAAATTCTTGC+TGG | 0.462315 | 1.4:-5151612 | None:intergenic |
| GAAAAGTTTATGCCGAAGAC+AGG | 0.470742 | 1.4:+5152535 | MS.gene66477:CDS |
| TCCTCAGTTGTAGTGGTGAT+AGG | 0.475085 | 1.4:+5151875 | MS.gene66477:CDS |
| AGAGAAGTTGAGTAATGAGT+TGG | 0.478671 | 1.4:+5153398 | MS.gene66477:CDS |
| GCAAAGAGAAGATCTAGAAA+TGG | 0.487901 | 1.4:+5152747 | MS.gene66477:CDS |
| ATGTGTAATCTGATGTTTGA+AGG | 0.495657 | 1.4:-5151699 | None:intergenic |
| TGGCAGCGCTGGTAATCATT+CGG | 0.503775 | 1.4:+5151810 | MS.gene66477:CDS |
| GATGGAAAGCATCTTGCTGC+TGG | 0.520199 | 1.4:+5151646 | MS.gene66477:CDS |
| AGAAGTCCAAAATCACATAC+AGG | 0.532109 | 1.4:+5152959 | MS.gene66477:CDS |
| AGGGAATAAAAGTTATTGAC+CGG | 0.542173 | 1.4:+5154567 | MS.gene66477:intron |
| ACTAGAAGAGGACAAGAAGA+AGG | 0.546755 | 1.4:+5153500 | MS.gene66477:CDS |
| AAATGCGGAAGCTTGATACC+TGG | 0.551489 | 1.4:+5153427 | MS.gene66477:CDS |
| CTTGCTGCTGGTGATTGCAA+TGG | 0.559138 | 1.4:+5151658 | MS.gene66477:CDS |
| TGCCGAAGACAGGGAAGCAG+AGG | 0.582437 | 1.4:+5152545 | MS.gene66477:CDS |
| TGCAAGATCCTCAGTTGTAG+TGG | 0.592258 | 1.4:+5151868 | MS.gene66477:CDS |
| ACCTATCACCACTACAACTG+AGG | 0.599393 | 1.4:-5151876 | None:intergenic |
| TATAGCAGGAAAAGATGCAG+AGG | 0.611609 | 1.4:+5152995 | MS.gene66477:CDS |
| AAAAGTTTATGCCGAAGACA+GGG | 0.626434 | 1.4:+5152536 | MS.gene66477:CDS |
| CATGCAGCGTAAAGCTCGTG+AGG | 0.627326 | 1.4:+5153350 | MS.gene66477:CDS |
| AAGCTCGTGAGGAGGTACGA+AGG | 0.645630 | 1.4:+5153361 | MS.gene66477:CDS |
| AGGTATTAACTGATCAAGAG+AGG | 0.653894 | 1.4:+5153472 | MS.gene66477:CDS |
| CGATAGCTTTCAATTCAAGG+AGG | 0.658269 | 1.4:+5154622 | MS.gene66477:CDS |
| AAGGAGAAGCAGAACGACAG+CGG | 0.658717 | 1.4:+5152722 | MS.gene66477:CDS |
| ACTTATATCAAAATTAGCAG+TGG | 0.666312 | 1.4:+5151841 | MS.gene66477:CDS |
| AGAGAGGCAGAAACTAGAAG+AGG | 0.669695 | 1.4:+5153488 | MS.gene66477:CDS |
| GTTCTGAAGAGTGATATAGC+AGG | 0.673495 | 1.4:+5152981 | MS.gene66477:CDS |
| CAGAGACCTAAATAAGCGTG+AGG | 0.681605 | 1.4:+5153452 | MS.gene66477:CDS |
| GCAGCGTAAAGCTCGTGAGG+AGG | 0.682044 | 1.4:+5153353 | MS.gene66477:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATATCAATGTAATATATA+TGG | + | chr1.4:5153865-5153884 | MS.gene66477:intron | 10.0% |
| !!! | AAAAAAATTAGACATTTTTG+TGG | - | chr1.4:5153315-5153334 | None:intergenic | 15.0% |
| !!! | CAGTAAAAAATCTTTAAAAT+AGG | - | chr1.4:5153561-5153580 | None:intergenic | 15.0% |
| !! | ACAAAATTTCAACATAAATG+AGG | - | chr1.4:5153906-5153925 | None:intergenic | 20.0% |
| !! | GGTATACAAAAAAAAATGAA+TGG | + | chr1.4:5151915-5151934 | MS.gene66477:intron | 20.0% |
| !! | TCTTACAATTATACATTGAT+CGG | + | chr1.4:5154293-5154312 | MS.gene66477:intron | 20.0% |
| !! | TTGAAACAGTAAAATTTCAA+AGG | - | chr1.4:5152398-5152417 | None:intergenic | 20.0% |
| !!! | GATGATATAAAAAAAGGTTT+TGG | + | chr1.4:5152817-5152836 | MS.gene66477:intron | 20.0% |
| !!! | GTATTTTATATATTAGTGCT+TGG | + | chr1.4:5153950-5153969 | MS.gene66477:intron | 20.0% |
| !!! | TAACCAATATTTTCTGAATT+TGG | + | chr1.4:5151446-5151465 | MS.gene66477:intron | 20.0% |
| !!! | TAATTTTTTTGTCAAAGTCA+AGG | + | chr1.4:5153325-5153344 | MS.gene66477:intron | 20.0% |
| !!! | TATTTTTGGTAAGATTTAAC+AGG | + | chr1.4:5152639-5152658 | MS.gene66477:intron | 20.0% |
| !!! | TTAAGCATGCAATAATTTTA+TGG | - | chr1.4:5154337-5154356 | None:intergenic | 20.0% |
| !!! | TTCAATGATTATCATTGATT+TGG | + | chr1.4:5152413-5152432 | MS.gene66477:intron | 20.0% |
| !!! | TTGTATAGAATATTTTGTGT+TGG | + | chr1.4:5152190-5152209 | MS.gene66477:intron | 20.0% |
| !!! | TTTTTCATCTAAAAATCTAC+AGG | - | chr1.4:5152925-5152944 | None:intergenic | 20.0% |
| !!! | TTTTTTGTCAATTCATGTTA+TGG | + | chr1.4:5151389-5151408 | MS.gene66477:intron | 20.0% |
| ! | AAAGAAGAAAACCAAATCAA+TGG | - | chr1.4:5152471-5152490 | None:intergenic | 25.0% |
| ! | AAATGAATCCCAACTTTAAT+TGG | + | chr1.4:5153779-5153798 | MS.gene66477:intron | 25.0% |
| ! | ACATTGTTTCATTTCTTTGT+TGG | + | chr1.4:5153070-5153089 | MS.gene66477:intron | 25.0% |
| ! | ACGATATATACAATTACCAA+TGG | - | chr1.4:5153255-5153274 | None:intergenic | 25.0% |
| ! | ACTTATATCAAAATTAGCAG+TGG | + | chr1.4:5151841-5151860 | MS.gene66477:CDS | 25.0% |
| ! | ATACTGCTAAATTTCTTGAT+AGG | + | chr1.4:5154424-5154443 | MS.gene66477:intron | 25.0% |
| ! | ATGCTTCATTAATTATTGTC+AGG | + | chr1.4:5152687-5152706 | MS.gene66477:intron | 25.0% |
| ! | CCAATTCAATCAAACTATAA+TGG | - | chr1.4:5154234-5154253 | None:intergenic | 25.0% |
| ! | CCATTATAGTTTGATTGAAT+TGG | + | chr1.4:5154231-5154250 | MS.gene66477:intron | 25.0% |
| ! | GAAACTTCAACACAAATTTA+TGG | - | chr1.4:5153045-5153064 | None:intergenic | 25.0% |
| ! | GAACCAAATTCAGAAAATAT+TGG | - | chr1.4:5151452-5151471 | None:intergenic | 25.0% |
| ! | GATCAATGTATAATTGTAAG+AGG | - | chr1.4:5154294-5154313 | None:intergenic | 25.0% |
| ! | TACCATTATATGATAACTTG+AGG | + | chr1.4:5154208-5154227 | MS.gene66477:intron | 25.0% |
| ! | TTTCTGCTCAATTGAATAAT+AGG | + | chr1.4:5151950-5151969 | MS.gene66477:intron | 25.0% |
| ! | TTTGAAGGTTGTATATATGA+AGG | - | chr1.4:5151687-5151706 | None:intergenic | 25.0% |
| !! | AGCTATCGAACATAATTTTA+AGG | - | chr1.4:5154610-5154629 | None:intergenic | 25.0% |
| !! | ATTGCTTTCTAGTACATTTA+CGG | - | chr1.4:5152610-5152629 | None:intergenic | 25.0% |
| !! | GCTGATGATGATATAAAAAA+AGG | + | chr1.4:5152811-5152830 | MS.gene66477:CDS | 25.0% |
| !!! | AAAAGCTTTTGATTATTGTG+AGG | + | chr1.4:5153842-5153861 | MS.gene66477:intron | 25.0% |
| !!! | AAGGTTTTTTGATAACTGAT+TGG | + | chr1.4:5151412-5151431 | MS.gene66477:intron | 25.0% |
| !!! | CAACCATTTTTTTTATAAGC+AGG | - | chr1.4:5152173-5152192 | None:intergenic | 25.0% |
| !!! | GCAATGTAAGTTGTTATTTT+TGG | + | chr1.4:5152625-5152644 | MS.gene66477:intron | 25.0% |
| !!! | TACAGCTGGTTTTTTTTTTA+TGG | - | chr1.4:5154007-5154026 | None:intergenic | 25.0% |
| !!! | TAGAATATTTTGTGTTGGTT+TGG | + | chr1.4:5152195-5152214 | MS.gene66477:intron | 25.0% |
| AAGTTTCAATTCTGTCTTTG+CGG | + | chr1.4:5154541-5154560 | MS.gene66477:intron | 30.0% | |
| AATAGCCAAAAAGAGAAAGT+TGG | - | chr1.4:5152118-5152137 | None:intergenic | 30.0% | |
| AATTTAGCAGTATCAACCAT+AGG | - | chr1.4:5154417-5154436 | None:intergenic | 30.0% | |
| ACTGATGATTCAAAGTCTTA+AGG | - | chr1.4:5154072-5154091 | None:intergenic | 30.0% | |
| AGGGAATAAAAGTTATTGAC+CGG | + | chr1.4:5154567-5154586 | MS.gene66477:intron | 30.0% | |
| ATAACCAAAACTTGAACCTT+CGG | - | chr1.4:5154156-5154175 | None:intergenic | 30.0% | |
| ATGTGTAATCTGATGTTTGA+AGG | - | chr1.4:5151702-5151721 | None:intergenic | 30.0% | |
| ATTTAGCAGTATCAACCATA+GGG | - | chr1.4:5154416-5154435 | None:intergenic | 30.0% | |
| GAATACTAAATTCCCTTTGT+AGG | + | chr1.4:5152225-5152244 | MS.gene66477:intron | 30.0% | |
| GAGCCTGCTTATAAAAAAAA+TGG | + | chr1.4:5152167-5152186 | MS.gene66477:intron | 30.0% | |
| GATTTGAATAACAATGTCCT+TGG | + | chr1.4:5153671-5153690 | MS.gene66477:intron | 30.0% | |
| GTTCTTATTGTATGACAATG+AGG | + | chr1.4:5154178-5154197 | MS.gene66477:intron | 30.0% | |
| TACAACTGTGCAGAAAAAAT+TGG | + | chr1.4:5151790-5151809 | MS.gene66477:intron | 30.0% | |
| TATCTGTAGCTGAAAAGAAA+CGG | - | chr1.4:5152843-5152862 | None:intergenic | 30.0% | |
| TGAACTTTAACAACCTCTTA+TGG | + | chr1.4:5152030-5152049 | MS.gene66477:intron | 30.0% | |
| TGCTAAATTTCTTGATAGGT+TGG | + | chr1.4:5154428-5154447 | MS.gene66477:intron | 30.0% | |
| TTAATACCTCACGCTTATTT+AGG | - | chr1.4:5153461-5153480 | None:intergenic | 30.0% | |
| TTCATTTAAAGAGAGTCAGT+AGG | - | chr1.4:5153766-5153785 | None:intergenic | 30.0% | |
| TTGCATCGAATAAAATGTCT+TGG | + | chr1.4:5153191-5153210 | MS.gene66477:intron | 30.0% | |
| TTGTAATAATGAGCCATAAG+AGG | - | chr1.4:5152046-5152065 | None:intergenic | 30.0% | |
| TTGTCAATTCATGTTATGGA+AGG | + | chr1.4:5151393-5151412 | MS.gene66477:intron | 30.0% | |
| ! | ATGAGTTGGATGAAAAAATG+CGG | + | chr1.4:5153412-5153431 | MS.gene66477:CDS | 30.0% |
| ! | GGAACAAAAGTTTTACATAG+AGG | + | chr1.4:5151971-5151990 | MS.gene66477:intron | 30.0% |
| !!! | ATTGATTTGGTTTTGCTCTA+GGG | + | chr1.4:5152426-5152445 | MS.gene66477:intron | 30.0% |
| !!! | CAAATTTTTTGCAAGCACAA+TGG | - | chr1.4:5153605-5153624 | None:intergenic | 30.0% |
| AAAAGTTTATGCCGAAGACA+GGG | + | chr1.4:5152536-5152555 | MS.gene66477:CDS | 35.0% | |
| AAATGTCTTGGACGTCATAT+TGG | + | chr1.4:5153203-5153222 | MS.gene66477:intron | 35.0% | |
| AAATTTGCATGCTAAGGAAC+AGG | + | chr1.4:5153135-5153154 | MS.gene66477:CDS | 35.0% | |
| AATTCTGTCTTTGCGGAATA+GGG | + | chr1.4:5154548-5154567 | MS.gene66477:intron | 35.0% | |
| AGAAGTCCAAAATCACATAC+AGG | + | chr1.4:5152959-5152978 | MS.gene66477:CDS | 35.0% | |
| AGAGAAGTTGAGTAATGAGT+TGG | + | chr1.4:5153398-5153417 | MS.gene66477:CDS | 35.0% | |
| AGAGCTAAATTTGCATGCTA+AGG | + | chr1.4:5153129-5153148 | MS.gene66477:CDS | 35.0% | |
| AGGTATTAACTGATCAAGAG+AGG | + | chr1.4:5153472-5153491 | MS.gene66477:CDS | 35.0% | |
| AGGTTGGAATCTGTTTACTT+CGG | + | chr1.4:5154444-5154463 | MS.gene66477:intron | 35.0% | |
| ATGAAGCATAATGTCAATGC+AGG | - | chr1.4:5152676-5152695 | None:intergenic | 35.0% | |
| ATTCAAATCAAGAGCAACCA+AGG | - | chr1.4:5153660-5153679 | None:intergenic | 35.0% | |
| ATTTGATCTGTCTTTCTCTG+TGG | + | chr1.4:5153620-5153639 | MS.gene66477:intron | 35.0% | |
| CTCTAAATAGACTCAAGTGT+CGG | - | chr1.4:5151741-5151760 | None:intergenic | 35.0% | |
| CTTTGTACAGTTTGTAGAGA+TGG | + | chr1.4:5152259-5152278 | MS.gene66477:CDS | 35.0% | |
| GAGTCAGTAGGATCAAAATA+AGG | - | chr1.4:5153754-5153773 | None:intergenic | 35.0% | |
| GCAAAGAGAAGATCTAGAAA+TGG | + | chr1.4:5152747-5152766 | MS.gene66477:CDS | 35.0% | |
| GCATGTAAAGGTTAGAAAGT+AGG | - | chr1.4:5154041-5154060 | None:intergenic | 35.0% | |
| GGCCTCAAGTTATCATATAA+TGG | - | chr1.4:5154213-5154232 | None:intergenic | 35.0% | |
| GGTTAATTGTTACGCATTGA+TGG | - | chr1.4:5154273-5154292 | None:intergenic | 35.0% | |
| GTGCATTCAACCTAAGATAT+TGG | + | chr1.4:5152145-5152164 | MS.gene66477:intron | 35.0% | |
| GTTCGATAGCTTTCAATTCA+AGG | + | chr1.4:5154619-5154638 | MS.gene66477:CDS | 35.0% | |
| TAGGGAGATGCTTCAATAAT+TGG | - | chr1.4:5154398-5154417 | None:intergenic | 35.0% | |
| TAGGTATGTTAGCATAGGTT+CGG | + | chr1.4:5151894-5151913 | MS.gene66477:intron | 35.0% | |
| TATTCTCATCTCTCAAAGTG+TGG | - | chr1.4:5151493-5151512 | None:intergenic | 35.0% | |
| TCAGATTACACATTGTTTGC+AGG | + | chr1.4:5151709-5151728 | MS.gene66477:CDS | 35.0% | |
| TTAAAGCTTAGCAGTACCAT+TGG | + | chr1.4:5153236-5153255 | MS.gene66477:intron | 35.0% | |
| TTCTAACCTTTACATGCTTG+AGG | + | chr1.4:5154044-5154063 | MS.gene66477:intron | 35.0% | |
| TTTCTTTGTTGGACTCTGAT+AGG | + | chr1.4:5153081-5153100 | MS.gene66477:intron | 35.0% | |
| ! | AACTTAGTCGTCCATTGATT+TGG | + | chr1.4:5152457-5152476 | MS.gene66477:intron | 35.0% |
| ! | AGCTTTTAGCATATAGACTC+TGG | - | chr1.4:5153829-5153848 | None:intergenic | 35.0% |
| ! | ATTATTGAAGCATCTCCCTA+TGG | + | chr1.4:5154398-5154417 | MS.gene66477:intron | 35.0% |
| ! | GCTTTTAGCATATAGACTCT+GGG | - | chr1.4:5153828-5153847 | None:intergenic | 35.0% |
| ! | TCAGAACCTGTATGTGATTT+TGG | - | chr1.4:5152968-5152987 | None:intergenic | 35.0% |
| ! | TGAGAATTCAAGTTCCATAG+AGG | + | chr1.4:5152297-5152316 | MS.gene66477:intron | 35.0% |
| !! | TGTCAGGTTGACTTCATTAA+AGG | + | chr1.4:5152703-5152722 | MS.gene66477:intron | 35.0% |
| !! | TGTGCATTTTGATGACTGTA+TGG | + | chr1.4:5151764-5151783 | MS.gene66477:intron | 35.0% |
| !!! | ATATTTTGTGTTGGTTTGGC+TGG | + | chr1.4:5152199-5152218 | MS.gene66477:intron | 35.0% |
| !!! | CATTGATTTGGTTTTGCTCT+AGG | + | chr1.4:5152425-5152444 | MS.gene66477:intron | 35.0% |
| AAACATCATAACTGCACTGC+AGG | - | chr1.4:5152346-5152365 | None:intergenic | 40.0% | |
| ACTAGAAGAGGACAAGAAGA+AGG | + | chr1.4:5153500-5153519 | MS.gene66477:CDS | 40.0% | |
| AGCAAGCACAAATCCTACAA+AGG | - | chr1.4:5152241-5152260 | None:intergenic | 40.0% | |
| ATAAGCATACGCAAATCTGC+AGG | + | chr1.4:5152874-5152893 | MS.gene66477:intron | 40.0% | |
| ATTCAAATTCAGCGCAACCA+AGG | - | chr1.4:5153722-5153741 | None:intergenic | 40.0% | |
| CAAAACTTGAACCTTCGGAT+CGG | - | chr1.4:5154151-5154170 | None:intergenic | 40.0% | |
| CAAGTGATCGAAATTCTTGC+TGG | - | chr1.4:5151615-5151634 | None:intergenic | 40.0% | |
| CAATTCTGTCTTTGCGGAAT+AGG | + | chr1.4:5154547-5154566 | MS.gene66477:intron | 40.0% | |
| CGATAGCTTTCAATTCAAGG+AGG | + | chr1.4:5154622-5154641 | MS.gene66477:CDS | 40.0% | |
| CTTTGGTACATCAACCTCTA+TGG | - | chr1.4:5152314-5152333 | None:intergenic | 40.0% | |
| GAAAAGTTTATGCCGAAGAC+AGG | + | chr1.4:5152535-5152554 | MS.gene66477:CDS | 40.0% | |
| GCAAGCACAAATCCTACAAA+GGG | - | chr1.4:5152240-5152259 | None:intergenic | 40.0% | |
| GCCAAAAAGAGAAAGTTGGA+TGG | - | chr1.4:5152114-5152133 | None:intergenic | 40.0% | |
| GGTGATAGGTATGTTAGCAT+AGG | + | chr1.4:5151889-5151908 | MS.gene66477:intron | 40.0% | |
| GTGGAAGGCCAATTAAAGTT+GGG | - | chr1.4:5153790-5153809 | None:intergenic | 40.0% | |
| TAAGCAGGCTCCAATATCTT+AGG | - | chr1.4:5152158-5152177 | None:intergenic | 40.0% | |
| TAAGCATACGCAAATCTGCA+GGG | + | chr1.4:5152875-5152894 | MS.gene66477:intron | 40.0% | |
| TATAGCAGGAAAAGATGCAG+AGG | + | chr1.4:5152995-5153014 | MS.gene66477:CDS | 40.0% | |
| TCTATTGCTGCATTAAGTGC+TGG | + | chr1.4:5151554-5151573 | MS.gene66477:intron | 40.0% | |
| TGGTCTCTAACTAATGTCCT+TGG | + | chr1.4:5153640-5153659 | MS.gene66477:intron | 40.0% | |
| TGTAGAGATGGTAAGTAAGC+AGG | + | chr1.4:5152271-5152290 | MS.gene66477:intron | 40.0% | |
| TGTGGAAGGCCAATTAAAGT+TGG | - | chr1.4:5153791-5153810 | None:intergenic | 40.0% | |
| ! | AGATGCAGAGGTAGGATTTT+CGG | + | chr1.4:5153007-5153026 | MS.gene66477:intron | 40.0% |
| ! | AGGATATCAGAAAGTACAGC+TGG | - | chr1.4:5154021-5154040 | None:intergenic | 40.0% |
| ! | GCCATCCAACTTTCTCTTTT+TGG | + | chr1.4:5152110-5152129 | MS.gene66477:intron | 40.0% |
| ! | TGTGATTTTGGACTTCTTCG+AGG | - | chr1.4:5152956-5152975 | None:intergenic | 40.0% |
| !! | ACTGCAGGATATTCTAGCTT+TGG | - | chr1.4:5152331-5152350 | None:intergenic | 40.0% |
| !! | GTTCTGAAGAGTGATATAGC+AGG | + | chr1.4:5152981-5153000 | MS.gene66477:CDS | 40.0% |
| !! | TCACTTGCTGTTAGTTCAGA+TGG | + | chr1.4:5151628-5151647 | MS.gene66477:CDS | 40.0% |
| AAATGCGGAAGCTTGATACC+TGG | + | chr1.4:5153427-5153446 | MS.gene66477:CDS | 45.0% | |
| AAGGCTCCTCAAGCATGTAA+AGG | - | chr1.4:5154053-5154072 | None:intergenic | 45.0% | |
| ACCTATCACCACTACAACTG+AGG | - | chr1.4:5151879-5151898 | None:intergenic | 45.0% | |
| AGAGAGGCAGAAACTAGAAG+AGG | + | chr1.4:5153488-5153507 | MS.gene66477:CDS | 45.0% | |
| CAGAGACCTAAATAAGCGTG+AGG | + | chr1.4:5153452-5153471 | MS.gene66477:CDS | 45.0% | |
| CTTATTTAGGTCTCTGCTCC+AGG | - | chr1.4:5153448-5153467 | None:intergenic | 45.0% | |
| GGCTGCACATACAACAATTC+CGG | - | chr1.4:5154589-5154608 | None:intergenic | 45.0% | |
| TCCTCAGTTGTAGTGGTGAT+AGG | + | chr1.4:5151875-5151894 | MS.gene66477:CDS | 45.0% | |
| TGAGAGATCTGTTGAAGAGC+TGG | + | chr1.4:5152578-5152597 | MS.gene66477:CDS | 45.0% | |
| TGCAAGATCCTCAGTTGTAG+TGG | + | chr1.4:5151868-5151887 | MS.gene66477:CDS | 45.0% | |
| ! | TGAGGAGGTACGAAGGATAT+TGG | + | chr1.4:5153368-5153387 | MS.gene66477:CDS | 45.0% |
| !! | CGATCCGAAGGTTCAAGTTT+TGG | + | chr1.4:5154149-5154168 | MS.gene66477:intron | 45.0% |
| !! | TAGACTCTGGGACCAATTAG+CGG | - | chr1.4:5153816-5153835 | None:intergenic | 45.0% |
| AACCTCTGCTTCCCTGTCTT+CGG | - | chr1.4:5152550-5152569 | None:intergenic | 50.0% | |
| AAGGAGAAGCAGAACGACAG+CGG | + | chr1.4:5152722-5152741 | MS.gene66477:CDS | 50.0% | |
| CTTGCTGCTGGTGATTGCAA+TGG | + | chr1.4:5151658-5151677 | MS.gene66477:CDS | 50.0% | |
| GCAGAAAAAATTGGCAGCGC+TGG | + | chr1.4:5151799-5151818 | MS.gene66477:intron | 50.0% | |
| GCAGGAAAAGATGCAGAGGT+AGG | + | chr1.4:5152999-5153018 | MS.gene66477:intron | 50.0% | |
| !! | AGACTCTGGGACCAATTAGC+GGG | - | chr1.4:5153815-5153834 | None:intergenic | 50.0% |
| !! | GATGGAAAGCATCTTGCTGC+TGG | + | chr1.4:5151646-5151665 | MS.gene66477:CDS | 50.0% |
| !! | TGGCAGCGCTGGTAATCATT+CGG | + | chr1.4:5151810-5151829 | MS.gene66477:CDS | 50.0% |
| ACCTTCGGATCGGATTTCGC+AGG | - | chr1.4:5154141-5154160 | None:intergenic | 55.0% | |
| CATGCAGCGTAAAGCTCGTG+AGG | + | chr1.4:5153350-5153369 | MS.gene66477:CDS | 55.0% | |
| TCCTGCGAAATCCGATCCGA+AGG | + | chr1.4:5154137-5154156 | MS.gene66477:intron | 55.0% | |
| ! | AAGCTCGTGAGGAGGTACGA+AGG | + | chr1.4:5153361-5153380 | MS.gene66477:CDS | 55.0% |
| !! | ACCAATTAGCGGGCTGTGGA+AGG | - | chr1.4:5153805-5153824 | None:intergenic | 55.0% |
| GCAGCGTAAAGCTCGTGAGG+AGG | + | chr1.4:5153353-5153372 | MS.gene66477:CDS | 60.0% | |
| GCCTTCCACAGCCCGCTAAT+TGG | + | chr1.4:5153801-5153820 | MS.gene66477:intron | 60.0% | |
| TGCCGAAGACAGGGAAGCAG+AGG | + | chr1.4:5152545-5152564 | MS.gene66477:CDS | 60.0% | |
| !! | TGGGACCAATTAGCGGGCTG+TGG | - | chr1.4:5153809-5153828 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 5151369 | 5154676 | 5151369 | ID=MS.gene66477 |
| chr1.4 | mRNA | 5151369 | 5154676 | 5151369 | ID=MS.gene66477.t1;Parent=MS.gene66477 |
| chr1.4 | exon | 5151369 | 5151378 | 5151369 | ID=MS.gene66477.t1.exon1;Parent=MS.gene66477.t1 |
| chr1.4 | CDS | 5151369 | 5151378 | 5151369 | ID=cds.MS.gene66477.t1;Parent=MS.gene66477.t1 |
| chr1.4 | exon | 5151602 | 5151730 | 5151602 | ID=MS.gene66477.t1.exon2;Parent=MS.gene66477.t1 |
| chr1.4 | CDS | 5151602 | 5151730 | 5151602 | ID=cds.MS.gene66477.t1;Parent=MS.gene66477.t1 |
| chr1.4 | exon | 5151803 | 5151896 | 5151803 | ID=MS.gene66477.t1.exon3;Parent=MS.gene66477.t1 |
| chr1.4 | CDS | 5151803 | 5151896 | 5151803 | ID=cds.MS.gene66477.t1;Parent=MS.gene66477.t1 |
| chr1.4 | exon | 5152247 | 5152280 | 5152247 | ID=MS.gene66477.t1.exon4;Parent=MS.gene66477.t1 |
| chr1.4 | CDS | 5152247 | 5152280 | 5152247 | ID=cds.MS.gene66477.t1;Parent=MS.gene66477.t1 |
| chr1.4 | exon | 5152522 | 5152629 | 5152522 | ID=MS.gene66477.t1.exon5;Parent=MS.gene66477.t1 |
| chr1.4 | CDS | 5152522 | 5152629 | 5152522 | ID=cds.MS.gene66477.t1;Parent=MS.gene66477.t1 |
| chr1.4 | exon | 5152709 | 5152832 | 5152709 | ID=MS.gene66477.t1.exon6;Parent=MS.gene66477.t1 |
| chr1.4 | CDS | 5152709 | 5152832 | 5152709 | ID=cds.MS.gene66477.t1;Parent=MS.gene66477.t1 |
| chr1.4 | exon | 5152937 | 5153016 | 5152937 | ID=MS.gene66477.t1.exon7;Parent=MS.gene66477.t1 |
| chr1.4 | CDS | 5152937 | 5153016 | 5152937 | ID=cds.MS.gene66477.t1;Parent=MS.gene66477.t1 |
| chr1.4 | exon | 5153103 | 5153177 | 5153103 | ID=MS.gene66477.t1.exon8;Parent=MS.gene66477.t1 |
| chr1.4 | CDS | 5153103 | 5153177 | 5153103 | ID=cds.MS.gene66477.t1;Parent=MS.gene66477.t1 |
| chr1.4 | exon | 5153342 | 5153521 | 5153342 | ID=MS.gene66477.t1.exon9;Parent=MS.gene66477.t1 |
| chr1.4 | CDS | 5153342 | 5153521 | 5153342 | ID=cds.MS.gene66477.t1;Parent=MS.gene66477.t1 |
| chr1.4 | exon | 5154569 | 5154676 | 5154569 | ID=MS.gene66477.t1.exon10;Parent=MS.gene66477.t1 |
| chr1.4 | CDS | 5154569 | 5154676 | 5154569 | ID=cds.MS.gene66477.t1;Parent=MS.gene66477.t1 |
| Gene Sequence |
| Protein sequence |
