Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052384.t1 | XP_004493832.1 | 57 | 172 | 44 | 2 | 1 | 142 | 1 | 172 | 6.80E-40 | 173.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052384.t1 | Q8S1Z1 | 43.1 | 197 | 55 | 4 | 1 | 140 | 1 | 197 | 6.4e-31 | 135.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052384.t1 | A0A1S2XSG9 | 57.0 | 172 | 44 | 2 | 1 | 142 | 1 | 172 | 4.9e-40 | 173.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049435 | MS.gene052384 | 0.802601 | 5.19E-49 | -1.69E-46 |
| MS.gene049850 | MS.gene052384 | 0.827279 | 1.71E-54 | -1.69E-46 |
| MS.gene050226 | MS.gene052384 | 0.81248 | 4.15E-51 | -1.69E-46 |
| MS.gene050227 | MS.gene052384 | 0.82115 | 4.71E-53 | -1.69E-46 |
| MS.gene050228 | MS.gene052384 | 0.812668 | 3.78E-51 | -1.69E-46 |
| MS.gene050442 | MS.gene052384 | 0.831829 | 1.34E-55 | -1.69E-46 |
| MS.gene050719 | MS.gene052384 | 0.803615 | 3.20E-49 | -1.69E-46 |
| MS.gene050721 | MS.gene052384 | 0.806951 | 6.41E-50 | -1.69E-46 |
| MS.gene050844 | MS.gene052384 | 0.802094 | 6.60E-49 | -1.69E-46 |
| MS.gene051210 | MS.gene052384 | 0.813054 | 3.11E-51 | -1.69E-46 |
| MS.gene052012 | MS.gene052384 | 0.817498 | 3.20E-52 | -1.69E-46 |
| MS.gene052323 | MS.gene052384 | 0.817303 | 3.54E-52 | -1.69E-46 |
| MS.gene052384 | MS.gene052896 | 0.807179 | 5.74E-50 | -1.69E-46 |
| MS.gene052384 | MS.gene053008 | 0.804159 | 2.47E-49 | -1.69E-46 |
| MS.gene052384 | MS.gene055818 | 0.821353 | 4.22E-53 | -1.69E-46 |
| MS.gene052384 | MS.gene056162 | 0.80653 | 7.87E-50 | -1.69E-46 |
| MS.gene052384 | MS.gene057915 | 0.800305 | 1.53E-48 | -1.69E-46 |
| MS.gene052384 | MS.gene058548 | 0.809329 | 2.00E-50 | -1.69E-46 |
| MS.gene052384 | MS.gene058625 | 0.811692 | 6.16E-51 | -1.69E-46 |
| MS.gene052384 | MS.gene058829 | 0.813681 | 2.26E-51 | -1.69E-46 |
| MS.gene052384 | MS.gene060572 | 0.803442 | 3.48E-49 | -1.69E-46 |
| MS.gene052384 | MS.gene060683 | 0.805237 | 1.47E-49 | -1.69E-46 |
| MS.gene052384 | MS.gene060685 | 0.804026 | 2.63E-49 | -1.69E-46 |
| MS.gene052384 | MS.gene060803 | 0.811727 | 6.06E-51 | -1.69E-46 |
| MS.gene052384 | MS.gene062564 | 0.823859 | 1.10E-53 | -1.69E-46 |
| MS.gene052384 | MS.gene065663 | 0.803773 | 2.97E-49 | -1.69E-46 |
| MS.gene052384 | MS.gene066320 | 0.807332 | 5.32E-50 | -1.69E-46 |
| MS.gene052384 | MS.gene066782 | 0.805514 | 1.29E-49 | -1.69E-46 |
| MS.gene052384 | MS.gene066784 | 0.820717 | 5.92E-53 | -1.69E-46 |
| MS.gene052384 | MS.gene069555 | 0.802818 | 4.68E-49 | -1.69E-46 |
| MS.gene052384 | MS.gene069868 | -0.816202 | 6.24E-52 | -1.69E-46 |
| MS.gene052384 | MS.gene071322 | 0.805689 | 1.18E-49 | -1.69E-46 |
| MS.gene052384 | MS.gene071438 | -0.802985 | 4.33E-49 | -1.69E-46 |
| MS.gene052384 | MS.gene072098 | 0.819008 | 1.45E-52 | -1.69E-46 |
| MS.gene052384 | MS.gene072624 | 0.800292 | 1.54E-48 | -1.69E-46 |
| MS.gene052384 | MS.gene072630 | 0.800432 | 1.45E-48 | -1.69E-46 |
| MS.gene052384 | MS.gene072668 | 0.80256 | 5.29E-49 | -1.69E-46 |
| MS.gene052384 | MS.gene072677 | 0.807565 | 4.75E-50 | -1.69E-46 |
| MS.gene052384 | MS.gene073008 | 0.803323 | 3.68E-49 | -1.69E-46 |
| MS.gene052384 | MS.gene073064 | 0.812001 | 5.28E-51 | -1.69E-46 |
| MS.gene052384 | MS.gene07344 | 0.814948 | 1.19E-51 | -1.69E-46 |
| MS.gene052384 | MS.gene073753 | 0.83387 | 4.16E-56 | -1.69E-46 |
| MS.gene052384 | MS.gene07798 | 0.806011 | 1.01E-49 | -1.69E-46 |
| MS.gene052384 | MS.gene08853 | 0.817208 | 3.72E-52 | -1.69E-46 |
| MS.gene052384 | MS.gene20635 | 0.801662 | 8.10E-49 | -1.69E-46 |
| MS.gene052384 | MS.gene21149 | 0.80997 | 1.45E-50 | -1.69E-46 |
| MS.gene052384 | MS.gene21881 | 0.804858 | 1.77E-49 | -1.69E-46 |
| MS.gene052384 | MS.gene21927 | 0.816355 | 5.77E-52 | -1.69E-46 |
| MS.gene052384 | MS.gene21929 | 0.824719 | 6.93E-54 | -1.69E-46 |
| MS.gene052384 | MS.gene22271 | 0.820213 | 7.72E-53 | -1.69E-46 |
| MS.gene052384 | MS.gene23055 | 0.806464 | 8.12E-50 | -1.69E-46 |
| MS.gene052384 | MS.gene23422 | 0.919994 | 2.24E-87 | -1.69E-46 |
| MS.gene052384 | MS.gene23525 | 0.831492 | 1.62E-55 | -1.69E-46 |
| MS.gene052384 | MS.gene23528 | 0.81317 | 2.93E-51 | -1.69E-46 |
| MS.gene052384 | MS.gene23893 | 0.81612 | 6.51E-52 | -1.69E-46 |
| MS.gene052384 | MS.gene24067 | 0.818852 | 1.58E-52 | -1.69E-46 |
| MS.gene052384 | MS.gene24642 | 0.800437 | 1.44E-48 | -1.69E-46 |
| MS.gene052384 | MS.gene24651 | 0.802182 | 6.33E-49 | -1.69E-46 |
| MS.gene052384 | MS.gene24740 | 0.818682 | 1.73E-52 | -1.69E-46 |
| MS.gene052384 | MS.gene24741 | 0.801133 | 1.04E-48 | -1.69E-46 |
| MS.gene052384 | MS.gene28498 | 0.821192 | 4.60E-53 | -1.69E-46 |
| MS.gene052384 | MS.gene29095 | 0.817025 | 4.08E-52 | -1.69E-46 |
| MS.gene052384 | MS.gene29489 | 0.804203 | 2.42E-49 | -1.69E-46 |
| MS.gene052384 | MS.gene29773 | 0.812626 | 3.86E-51 | -1.69E-46 |
| MS.gene052384 | MS.gene30739 | 0.811319 | 7.43E-51 | -1.69E-46 |
| MS.gene052384 | MS.gene31283 | 0.827397 | 1.60E-54 | -1.69E-46 |
| MS.gene052384 | MS.gene32556 | 0.826343 | 2.86E-54 | -1.69E-46 |
| MS.gene052384 | MS.gene33468 | 0.807228 | 5.60E-50 | -1.69E-46 |
| MS.gene052384 | MS.gene33624 | 0.825834 | 3.78E-54 | -1.69E-46 |
| MS.gene052384 | MS.gene35631 | 0.807786 | 4.26E-50 | -1.69E-46 |
| MS.gene052384 | MS.gene35967 | 0.809762 | 1.61E-50 | -1.69E-46 |
| MS.gene052384 | MS.gene37483 | 0.803961 | 2.72E-49 | -1.69E-46 |
| MS.gene052384 | MS.gene39554 | 0.802009 | 6.87E-49 | -1.69E-46 |
| MS.gene052384 | MS.gene41533 | 0.826993 | 2.00E-54 | -1.69E-46 |
| MS.gene052384 | MS.gene43973 | 0.805199 | 1.50E-49 | -1.69E-46 |
| MS.gene052384 | MS.gene44603 | 0.808171 | 3.53E-50 | -1.69E-46 |
| MS.gene052384 | MS.gene44986 | 0.802424 | 5.65E-49 | -1.69E-46 |
| MS.gene052384 | MS.gene45193 | 0.808568 | 2.91E-50 | -1.69E-46 |
| MS.gene052384 | MS.gene45194 | 0.815775 | 7.78E-52 | -1.69E-46 |
| MS.gene052384 | MS.gene45405 | 0.815413 | 9.37E-52 | -1.69E-46 |
| MS.gene052384 | MS.gene48244 | 0.809005 | 2.34E-50 | -1.69E-46 |
| MS.gene052384 | MS.gene49281 | 0.803507 | 3.37E-49 | -1.69E-46 |
| MS.gene052384 | MS.gene49283 | 0.804676 | 1.93E-49 | -1.69E-46 |
| MS.gene052384 | MS.gene49386 | 0.813809 | 2.12E-51 | -1.69E-46 |
| MS.gene052384 | MS.gene49486 | 0.80996 | 1.46E-50 | -1.69E-46 |
| MS.gene052384 | MS.gene49659 | 0.813313 | 2.73E-51 | -1.69E-46 |
| MS.gene052384 | MS.gene49665 | 0.806606 | 7.58E-50 | -1.69E-46 |
| MS.gene052384 | MS.gene50031 | 0.808111 | 3.64E-50 | -1.69E-46 |
| MS.gene052384 | MS.gene51156 | 0.81432 | 1.64E-51 | -1.69E-46 |
| MS.gene052384 | MS.gene51511 | 0.811377 | 7.22E-51 | -1.69E-46 |
| MS.gene052384 | MS.gene51549 | -0.804562 | 2.04E-49 | -1.69E-46 |
| MS.gene052384 | MS.gene51818 | 0.802069 | 6.68E-49 | -1.69E-46 |
| MS.gene052384 | MS.gene52059 | 0.801257 | 9.81E-49 | -1.69E-46 |
| MS.gene052384 | MS.gene53467 | 0.803608 | 3.21E-49 | -1.69E-46 |
| MS.gene052384 | MS.gene53586 | 0.801194 | 1.01E-48 | -1.69E-46 |
| MS.gene052384 | MS.gene53771 | 0.805896 | 1.07E-49 | -1.69E-46 |
| MS.gene052384 | MS.gene53875 | -0.801926 | 7.15E-49 | -1.69E-46 |
| MS.gene052384 | MS.gene54544 | 0.804907 | 1.72E-49 | -1.69E-46 |
| MS.gene052384 | MS.gene54967 | 0.803803 | 2.93E-49 | -1.69E-46 |
| MS.gene052384 | MS.gene55406 | 0.810602 | 1.06E-50 | -1.69E-46 |
| MS.gene052384 | MS.gene55539 | 0.819052 | 1.42E-52 | -1.69E-46 |
| MS.gene052384 | MS.gene55540 | 0.805485 | 1.30E-49 | -1.69E-46 |
| MS.gene052384 | MS.gene55778 | 0.810597 | 1.06E-50 | -1.69E-46 |
| MS.gene052384 | MS.gene56537 | 0.844383 | 7.82E-59 | -1.69E-46 |
| MS.gene052384 | MS.gene57027 | 0.806226 | 9.12E-50 | -1.69E-46 |
| MS.gene052384 | MS.gene57107 | 0.811333 | 7.38E-51 | -1.69E-46 |
| MS.gene052384 | MS.gene57160 | -0.824781 | 6.70E-54 | -1.69E-46 |
| MS.gene052384 | MS.gene57162 | -0.813773 | 2.16E-51 | -1.69E-46 |
| MS.gene052384 | MS.gene58468 | 0.800495 | 1.40E-48 | -1.69E-46 |
| MS.gene052384 | MS.gene58547 | 0.815 | 1.16E-51 | -1.69E-46 |
| MS.gene052384 | MS.gene58686 | 0.835919 | 1.27E-56 | -1.69E-46 |
| MS.gene052384 | MS.gene58802 | 0.804199 | 2.42E-49 | -1.69E-46 |
| MS.gene052384 | MS.gene59305 | 0.817439 | 3.30E-52 | -1.69E-46 |
| MS.gene052384 | MS.gene59949 | 0.80878 | 2.62E-50 | -1.69E-46 |
| MS.gene052384 | MS.gene62214 | 0.805635 | 1.21E-49 | -1.69E-46 |
| MS.gene052384 | MS.gene62393 | 0.810641 | 1.04E-50 | -1.69E-46 |
| MS.gene052384 | MS.gene63412 | 0.804463 | 2.13E-49 | -1.69E-46 |
| MS.gene052384 | MS.gene64249 | 0.807235 | 5.58E-50 | -1.69E-46 |
| MS.gene052384 | MS.gene64417 | 0.800305 | 1.53E-48 | -1.69E-46 |
| MS.gene052384 | MS.gene64670 | 0.830007 | 3.74E-55 | -1.69E-46 |
| MS.gene052384 | MS.gene64981 | 0.810906 | 9.13E-51 | -1.69E-46 |
| MS.gene052384 | MS.gene65271 | 0.8211 | 4.83E-53 | -1.69E-46 |
| MS.gene052384 | MS.gene65650 | 0.81335 | 2.68E-51 | -1.69E-46 |
| MS.gene052384 | MS.gene66477 | 0.808209 | 3.46E-50 | -1.69E-46 |
| MS.gene052384 | MS.gene67387 | 0.817745 | 2.81E-52 | -1.69E-46 |
| MS.gene052384 | MS.gene67738 | 0.80133 | 9.47E-49 | -1.69E-46 |
| MS.gene052384 | MS.gene68826 | 0.807312 | 5.38E-50 | -1.69E-46 |
| MS.gene052384 | MS.gene69794 | 0.810172 | 1.32E-50 | -1.69E-46 |
| MS.gene052384 | MS.gene70852 | 0.807861 | 4.11E-50 | -1.69E-46 |
| MS.gene052384 | MS.gene71871 | 0.802329 | 5.91E-49 | -1.69E-46 |
| MS.gene052384 | MS.gene72268 | 0.807705 | 4.44E-50 | -1.69E-46 |
| MS.gene052384 | MS.gene73640 | 0.80505 | 1.61E-49 | -1.69E-46 |
| MS.gene052384 | MS.gene75619 | -0.803198 | 3.91E-49 | -1.69E-46 |
| MS.gene052384 | MS.gene76533 | -0.812678 | 3.76E-51 | -1.69E-46 |
| MS.gene052384 | MS.gene77588 | 0.81661 | 5.06E-52 | -1.69E-46 |
| MS.gene052384 | MS.gene78247 | 0.828297 | 9.72E-55 | -1.69E-46 |
| MS.gene052384 | MS.gene78492 | 0.808002 | 3.84E-50 | -1.69E-46 |
| MS.gene052384 | MS.gene79285 | 0.803572 | 3.27E-49 | -1.69E-46 |
| MS.gene052384 | MS.gene80712 | 0.802341 | 5.87E-49 | -1.69E-46 |
| MS.gene052384 | MS.gene81370 | 0.81332 | 2.72E-51 | -1.69E-46 |
| MS.gene052384 | MS.gene81653 | 0.806361 | 8.54E-50 | -1.69E-46 |
| MS.gene052384 | MS.gene83357 | 0.955619 | 2.00E-113 | -1.69E-46 |
| MS.gene052384 | MS.gene83476 | 0.812024 | 5.22E-51 | -1.69E-46 |
| MS.gene052384 | MS.gene83734 | 0.801661 | 8.11E-49 | -1.69E-46 |
| MS.gene052384 | MS.gene84326 | 0.809261 | 2.07E-50 | -1.69E-46 |
| MS.gene052384 | MS.gene84388 | 0.809207 | 2.12E-50 | -1.69E-46 |
| MS.gene052384 | MS.gene84812 | 0.819384 | 1.19E-52 | -1.69E-46 |
| MS.gene052384 | MS.gene85149 | -0.81367 | 2.28E-51 | -1.69E-46 |
| MS.gene052384 | MS.gene85277 | 0.80789 | 4.05E-50 | -1.69E-46 |
| MS.gene052384 | MS.gene86844 | 0.812975 | 3.24E-51 | -1.69E-46 |
| MS.gene052384 | MS.gene90525 | 0.80075 | 1.24E-48 | -1.69E-46 |
| MS.gene052384 | MS.gene90938 | 0.803496 | 3.39E-49 | -1.69E-46 |
| MS.gene052384 | MS.gene92383 | 0.802354 | 5.84E-49 | -1.69E-46 |
| MS.gene052384 | MS.gene93311 | 0.80965 | 1.70E-50 | -1.69E-46 |
| MS.gene052384 | MS.gene93457 | 0.813353 | 2.67E-51 | -1.69E-46 |
| MS.gene052384 | MS.gene96092 | 0.80899 | 2.36E-50 | -1.69E-46 |
| MS.gene052384 | MS.gene96791 | 0.838789 | 2.33E-57 | -1.69E-46 |
| MS.gene052384 | MS.gene97766 | 0.800273 | 1.56E-48 | -1.69E-46 |
| MS.gene052384 | MS.gene98543 | 0.811985 | 5.32E-51 | -1.69E-46 |
| MS.gene052384 | MS.gene98828 | 0.816022 | 6.85E-52 | -1.69E-46 |
| MS.gene052384 | MS.gene99751 | 0.801838 | 7.45E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052384.t1 | MTR_4g094380 | 40.704 | 199 | 61 | 3 | 1 | 142 | 1 | 199 | 5.14e-41 | 137 |
| MS.gene052384.t1 | MTR_4g094380 | 50.360 | 139 | 40 | 2 | 1 | 110 | 1 | 139 | 5.15e-39 | 130 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052384.t1 | AT3G60360 | 40.404 | 198 | 62 | 4 | 1 | 142 | 1 | 198 | 1.08e-37 | 129 |
Find 22 sgRNAs with CRISPR-Local
Find 118 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAGATTCAGTCTGAGAAAA+AGG | 0.320386 | 7.4:+11872939 | MS.gene052384:CDS |
| TTTCATCTATGAACAGAATA+AGG | 0.326393 | 7.4:+11874618 | MS.gene052384:CDS |
| ATCTTAAAGTAAAATTCATC+TGG | 0.330226 | 7.4:-11872823 | None:intergenic |
| AATATACCTGAGTCTCTTCC+TGG | 0.342208 | 7.4:-11874519 | None:intergenic |
| AGGGTTTCACGGAAACGATT+TGG | 0.362984 | 7.4:+11872600 | MS.gene052384:intron |
| ATTAGAGCTAGACTTGTTGA+TGG | 0.367637 | 7.4:+11872847 | MS.gene052384:CDS |
| GCTTGTCTGTCAGACACTTA+AGG | 0.375501 | 7.4:+11872780 | MS.gene052384:intron |
| CAGACTGAATCTCTTGAAGA+AGG | 0.417743 | 7.4:-11872930 | None:intergenic |
| GTCTACGGATGATGTTTCTC+AGG | 0.432159 | 7.4:-11872463 | None:intergenic |
| GCACAAAGACTATCTCCTTC+GGG | 0.434793 | 7.4:+11872635 | MS.gene052384:CDS |
| AGCACAAAGACTATCTCCTT+CGG | 0.447683 | 7.4:+11872634 | MS.gene052384:CDS |
| TCGTAACTATTAGGGTTTCA+CGG | 0.494684 | 7.4:+11872589 | MS.gene052384:intron |
| TCTTAAAGTAAAATTCATCT+GGG | 0.525519 | 7.4:-11872822 | None:intergenic |
| CTATATCGATTACACAATCC+AGG | 0.543493 | 7.4:+11874501 | MS.gene052384:CDS |
| AAGAAAGCAAGAGTAGACTC+AGG | 0.549205 | 7.4:+11874464 | MS.gene052384:CDS |
| TGTGATAAGCTTTAGCCCGA+AGG | 0.563386 | 7.4:-11872650 | None:intergenic |
| CACAATCCAGGAAGAGACTC+AGG | 0.567026 | 7.4:+11874513 | MS.gene052384:CDS |
| AGACTGAATCTCTTGAAGAA+GGG | 0.587041 | 7.4:-11872929 | None:intergenic |
| AATAGCATGAGAATTCAGTT+CGG | 0.612076 | 7.4:-11873086 | None:intergenic |
| AGAAAGCAAGAGTAGACTCA+GGG | 0.625238 | 7.4:+11874465 | MS.gene052384:CDS |
| GCTCTTTGTAAGTACGTCTA+CGG | 0.634635 | 7.4:-11872478 | None:intergenic |
| TCTACGGATGATGTTTCTCA+GGG | 0.657071 | 7.4:-11872462 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTCAAAAAAAAAAATATGCT+AGG | + | chr7.4:11873381-11873400 | MS.gene052384:intron | 15.0% |
| !! | AAAAAAATATGCTAGGAATA+TGG | + | chr7.4:11873388-11873407 | MS.gene052384:intron | 20.0% |
| !! | AAAAAATATGCTAGGAATAT+GGG | + | chr7.4:11873389-11873408 | MS.gene052384:intron | 20.0% |
| !! | ACCACAAAAATTATTCAAAA+TGG | - | chr7.4:11874313-11874332 | None:intergenic | 20.0% |
| !! | ATAAATGTAGAGTAGATAAA+TGG | - | chr7.4:11873774-11873793 | None:intergenic | 20.0% |
| !! | ATACGAAATAAAACTTCAAT+AGG | - | chr7.4:11874184-11874203 | None:intergenic | 20.0% |
| !! | ATCATGTTTCCTTATTAAAA+CGG | + | chr7.4:11873837-11873856 | MS.gene052384:intron | 20.0% |
| !! | ATCTTAAAGTAAAATTCATC+TGG | - | chr7.4:11872826-11872845 | None:intergenic | 20.0% |
| !! | TCTTAAAGTAAAATTCATCT+GGG | - | chr7.4:11872825-11872844 | None:intergenic | 20.0% |
| !! | TTATGGATCTAACTAAAATT+AGG | + | chr7.4:11873644-11873663 | MS.gene052384:intron | 20.0% |
| !!! | AACAAATTTTCAAAAGTTGA+TGG | - | chr7.4:11873326-11873345 | None:intergenic | 20.0% |
| !!! | AATTTGTTTAGTGTATTTCT+TGG | + | chr7.4:11873338-11873357 | MS.gene052384:intron | 20.0% |
| !!! | GCTACTAGTTTTATAATATA+CGG | + | chr7.4:11874287-11874306 | MS.gene052384:intron | 20.0% |
| !!! | TCATCTTATTCTATTTTATG+TGG | - | chr7.4:11874121-11874140 | None:intergenic | 20.0% |
| !!! | TTCTCTTTTCTTATGTATTT+GGG | + | chr7.4:11873990-11874009 | MS.gene052384:intron | 20.0% |
| ! | AATTAACTCTACCAAAACAT+GGG | - | chr7.4:11873626-11873645 | None:intergenic | 25.0% |
| ! | ATAGATAAATGGAATAAAGC+CGG | + | chr7.4:11873916-11873935 | MS.gene052384:intron | 25.0% |
| ! | CAAATACATAAGAAAAGAGA+AGG | - | chr7.4:11873991-11874010 | None:intergenic | 25.0% |
| ! | CATAAATGGAAAGTAAATGT+AGG | + | chr7.4:11873893-11873912 | MS.gene052384:intron | 25.0% |
| ! | CTTAGTTGTCAATACAATAA+TGG | - | chr7.4:11873509-11873528 | None:intergenic | 25.0% |
| ! | GAAATAAAACTTCAATAGGA+TGG | - | chr7.4:11874180-11874199 | None:intergenic | 25.0% |
| ! | GAATATATGATATTGGATCA+GGG | - | chr7.4:11873469-11873488 | None:intergenic | 25.0% |
| ! | GTAAATGTAGGATAGATAAA+TGG | + | chr7.4:11873905-11873924 | MS.gene052384:intron | 25.0% |
| ! | TAATTAACTCTACCAAAACA+TGG | - | chr7.4:11873627-11873646 | None:intergenic | 25.0% |
| ! | TACATGCGAATATATGATAT+TGG | - | chr7.4:11873476-11873495 | None:intergenic | 25.0% |
| ! | TCAAGTCTTAATGTTAACAA+AGG | - | chr7.4:11873277-11873296 | None:intergenic | 25.0% |
| ! | TCATGTTTCCTTATTAAAAC+GGG | + | chr7.4:11873838-11873857 | MS.gene052384:intron | 25.0% |
| ! | TTCATGCTTAGTTTCAAATT+TGG | + | chr7.4:11872707-11872726 | MS.gene052384:intron | 25.0% |
| ! | TTCTTGGAACAAATAAAATG+CGG | + | chr7.4:11873354-11873373 | MS.gene052384:intron | 25.0% |
| ! | TTTCATCTATGAACAGAATA+AGG | + | chr7.4:11874618-11874637 | MS.gene052384:CDS | 25.0% |
| !! | CTTCTCTTTTCTTATGTATT+TGG | + | chr7.4:11873989-11874008 | MS.gene052384:intron | 25.0% |
| !! | TAACATGCATGTTTTATGAA+TGG | + | chr7.4:11873676-11873695 | MS.gene052384:intron | 25.0% |
| !!! | GAACATGAGTTTTATTCTAT+GGG | + | chr7.4:11873566-11873585 | MS.gene052384:intron | 25.0% |
| !!! | GAAGTTTTATTTCGTATAAG+CGG | + | chr7.4:11874187-11874206 | MS.gene052384:intron | 25.0% |
| !!! | GCCATTTTGAATAATTTTTG+TGG | + | chr7.4:11874309-11874328 | MS.gene052384:intron | 25.0% |
| !!! | GTTTGTTTTCGTAACTATTA+GGG | + | chr7.4:11872581-11872600 | MS.gene052384:intron | 25.0% |
| !!! | TGAACATGAGTTTTATTCTA+TGG | + | chr7.4:11873565-11873584 | MS.gene052384:intron | 25.0% |
| !!! | TGTTTTGGTAGAGTTAATTA+TGG | + | chr7.4:11873627-11873646 | MS.gene052384:intron | 25.0% |
| !!! | TTCTCATGCTATTTTCTATA+CGG | + | chr7.4:11873096-11873115 | MS.gene052384:CDS | 25.0% |
| AAAACTTCAATAGGATGGAT+AGG | - | chr7.4:11874175-11874194 | None:intergenic | 30.0% | |
| AATAGCATGAGAATTCAGTT+CGG | - | chr7.4:11873089-11873108 | None:intergenic | 30.0% | |
| ACAAACGAAATTGAAGCATA+TGG | - | chr7.4:11872567-11872586 | None:intergenic | 30.0% | |
| AGACATAAGTGAAAGATTAG+TGG | + | chr7.4:11873803-11873822 | MS.gene052384:intron | 30.0% | |
| ATCACTCAAACATGTTCATA+AGG | - | chr7.4:11874561-11874580 | None:intergenic | 30.0% | |
| ATGTATTGAGTTACTATCCA+AGG | - | chr7.4:11873725-11873744 | None:intergenic | 30.0% | |
| ATTAACTCTACCAAAACATG+GGG | - | chr7.4:11873625-11873644 | None:intergenic | 30.0% | |
| CATTCACAAGTAAGCAAATT+TGG | - | chr7.4:11873026-11873045 | None:intergenic | 30.0% | |
| CGAATATATGATATTGGATC+AGG | - | chr7.4:11873470-11873489 | None:intergenic | 30.0% | |
| GAAGAGAAAGAGAAGAAAAA+AGG | + | chr7.4:11874232-11874251 | MS.gene052384:intron | 30.0% | |
| TAAAGCTTATCACAAAAAGC+AGG | + | chr7.4:11872659-11872678 | MS.gene052384:CDS | 30.0% | |
| TAGTAACTCAATACATGTGT+TGG | + | chr7.4:11873729-11873748 | MS.gene052384:intron | 30.0% | |
| TGACTGATAACAATTATGGT+TGG | + | chr7.4:11874257-11874276 | MS.gene052384:intron | 30.0% | |
| TGTATTGAGTTACTATCCAA+GGG | - | chr7.4:11873724-11873743 | None:intergenic | 30.0% | |
| TTGTGTCTATCTCTCATAAA+TGG | + | chr7.4:11873879-11873898 | MS.gene052384:intron | 30.0% | |
| ! | CTTACTTGTGAATGTTTTGT+TGG | + | chr7.4:11873032-11873051 | MS.gene052384:intron | 30.0% |
| ! | TTTTCAGTTTTCTGCAAGAA+GGG | - | chr7.4:11873058-11873077 | None:intergenic | 30.0% |
| !! | AAACATGCATGTTATTTCCT+CGG | - | chr7.4:11873670-11873689 | None:intergenic | 30.0% |
| !! | ATGATAGATTTTGTTGTGTC+TGG | + | chr7.4:11874137-11874156 | MS.gene052384:intron | 30.0% |
| !! | CGTTTGTTTTCGTAACTATT+AGG | + | chr7.4:11872580-11872599 | MS.gene052384:intron | 30.0% |
| !! | TAGTAAGACCCGTTTTAATA+AGG | - | chr7.4:11873849-11873868 | None:intergenic | 30.0% |
| !! | TGATCAATAATTTTAGCCCA+TGG | + | chr7.4:11874210-11874229 | MS.gene052384:intron | 30.0% |
| !!! | ATGCTATTTTCTATACGGAA+AGG | + | chr7.4:11873101-11873120 | MS.gene052384:CDS | 30.0% |
| AAAGAGAACTAGTTACGGTT+GGG | - | chr7.4:11872507-11872526 | None:intergenic | 35.0% | |
| AAAGCCGGAAAGTAAATGTT+GGG | + | chr7.4:11873931-11873950 | MS.gene052384:intron | 35.0% | |
| AAATCAACTCATGCTTGTTC+TGG | - | chr7.4:11873139-11873158 | None:intergenic | 35.0% | |
| AACGAAATTGAAGCATATGG+AGG | - | chr7.4:11872564-11872583 | None:intergenic | 35.0% | |
| ACAAAAAGCAGGACACTTTA+CGG | + | chr7.4:11872670-11872689 | MS.gene052384:CDS | 35.0% | |
| AGACTGAATCTCTTGAAGAA+GGG | - | chr7.4:11872932-11872951 | None:intergenic | 35.0% | |
| AGAGATTCAGTCTGAGAAAA+AGG | + | chr7.4:11872939-11872958 | MS.gene052384:CDS | 35.0% | |
| ATCTAACTAAAATTAGGCCG+AGG | + | chr7.4:11873650-11873669 | MS.gene052384:intron | 35.0% | |
| GAGAACAATCTATCATTCTG+TGG | - | chr7.4:11874432-11874451 | None:intergenic | 35.0% | |
| GAGAGAAAGAGAACTAGTTA+CGG | - | chr7.4:11872512-11872531 | None:intergenic | 35.0% | |
| GGAGTGACTGATAACAATTA+TGG | + | chr7.4:11874253-11874272 | MS.gene052384:intron | 35.0% | |
| TAAAGCCGGAAAGTAAATGT+TGG | + | chr7.4:11873930-11873949 | MS.gene052384:intron | 35.0% | |
| TATCCTGACATTCAACATCA+CGG | + | chr7.4:11872883-11872902 | MS.gene052384:intron | 35.0% | |
| TCGTAACTATTAGGGTTTCA+CGG | + | chr7.4:11872589-11872608 | MS.gene052384:intron | 35.0% | |
| TTCTTCTCTTTCTCTTCCAT+GGG | - | chr7.4:11874229-11874248 | None:intergenic | 35.0% | |
| TTGACAACTAAGATAGCATC+TGG | + | chr7.4:11873517-11873536 | MS.gene052384:intron | 35.0% | |
| TTGTTCAATGAAAGCTGACT+TGG | + | chr7.4:11874353-11874372 | MS.gene052384:intron | 35.0% | |
| TTTCTTCTCTTTCTCTTCCA+TGG | - | chr7.4:11874230-11874249 | None:intergenic | 35.0% | |
| ! | CTATATCGATTACACAATCC+AGG | + | chr7.4:11874501-11874520 | MS.gene052384:CDS | 35.0% |
| ! | CTTTTCAGTTTTCTGCAAGA+AGG | - | chr7.4:11873059-11873078 | None:intergenic | 35.0% |
| !! | ATTAGAGCTAGACTTGTTGA+TGG | + | chr7.4:11872847-11872866 | MS.gene052384:CDS | 35.0% |
| !!! | CATGAGTTTTATTCTATGGG+AGG | + | chr7.4:11873569-11873588 | MS.gene052384:intron | 35.0% |
| AAGAAAGCAAGAGTAGACTC+AGG | + | chr7.4:11874464-11874483 | MS.gene052384:CDS | 40.0% | |
| AATATACCTGAGTCTCTTCC+TGG | - | chr7.4:11874522-11874541 | None:intergenic | 40.0% | |
| AATCTCTTGAAGAAGGGTTC+TGG | - | chr7.4:11872926-11872945 | None:intergenic | 40.0% | |
| AGAAAGCAAGAGTAGACTCA+GGG | + | chr7.4:11874465-11874484 | MS.gene052384:CDS | 40.0% | |
| AGCACAAAGACTATCTCCTT+CGG | + | chr7.4:11872634-11872653 | MS.gene052384:CDS | 40.0% | |
| ATCCTGACATTCAACATCAC+GGG | + | chr7.4:11872884-11872903 | MS.gene052384:intron | 40.0% | |
| CAAAAAGCAGGACACTTTAC+GGG | + | chr7.4:11872671-11872690 | MS.gene052384:CDS | 40.0% | |
| CAGACTGAATCTCTTGAAGA+AGG | - | chr7.4:11872933-11872952 | None:intergenic | 40.0% | |
| GAAAGAGAACTAGTTACGGT+TGG | - | chr7.4:11872508-11872527 | None:intergenic | 40.0% | |
| GATTACAGTCAACTGAGTCA+AGG | - | chr7.4:11873445-11873464 | None:intergenic | 40.0% | |
| GATTCAGTCTGAGAAAAAGG+TGG | + | chr7.4:11872942-11872961 | MS.gene052384:intron | 40.0% | |
| GCTCTTTGTAAGTACGTCTA+CGG | - | chr7.4:11872481-11872500 | None:intergenic | 40.0% | |
| TATGCTAGGAATATGGGTTC+AGG | + | chr7.4:11873395-11873414 | MS.gene052384:intron | 40.0% | |
| TCTACGGATGATGTTTCTCA+GGG | - | chr7.4:11872465-11872484 | None:intergenic | 40.0% | |
| ! | GACTTGGTTCATAGTGCATT+TGG | + | chr7.4:11874369-11874388 | MS.gene052384:intron | 40.0% |
| ACCAAAACATGGGGACATAC+TGG | - | chr7.4:11873616-11873635 | None:intergenic | 45.0% | |
| AGGGTTTCACGGAAACGATT+TGG | + | chr7.4:11872600-11872619 | MS.gene052384:intron | 45.0% | |
| CAGTCTGAGAAAAAGGTGGA+TGG | + | chr7.4:11872946-11872965 | MS.gene052384:intron | 45.0% | |
| GCACAAAGACTATCTCCTTC+GGG | + | chr7.4:11872635-11872654 | MS.gene052384:CDS | 45.0% | |
| GCTGCCCAACATTTACTTTC+CGG | - | chr7.4:11873938-11873957 | None:intergenic | 45.0% | |
| GCTTGTCTGTCAGACACTTA+AGG | + | chr7.4:11872780-11872799 | MS.gene052384:intron | 45.0% | |
| GTCTACGGATGATGTTTCTC+AGG | - | chr7.4:11872466-11872485 | None:intergenic | 45.0% | |
| TAAGATAGCATCTGGCAGAC+AGG | + | chr7.4:11873525-11873544 | MS.gene052384:intron | 45.0% | |
| TCAACTGAGTCAAGGCTTCA+TGG | - | chr7.4:11873437-11873456 | None:intergenic | 45.0% | |
| TCTGGCAGACAGGAAAAAGT+AGG | + | chr7.4:11873535-11873554 | MS.gene052384:intron | 45.0% | |
| TTCCCGTGATGTTGAATGTC+AGG | - | chr7.4:11872889-11872908 | None:intergenic | 45.0% | |
| ! | ACTCAATACATGTGTTGGCG+AGG | + | chr7.4:11873734-11873753 | MS.gene052384:intron | 45.0% |
| ! | TATCCAAGGGTACGCTGAAA+AGG | - | chr7.4:11873711-11873730 | None:intergenic | 45.0% |
| ! | TCCAGTATGTCCCCATGTTT+TGG | + | chr7.4:11873612-11873631 | MS.gene052384:intron | 45.0% |
| ! | TGTGATAAGCTTTAGCCCGA+AGG | - | chr7.4:11872653-11872672 | None:intergenic | 45.0% |
| CACAATCCAGGAAGAGACTC+AGG | + | chr7.4:11874513-11874532 | MS.gene052384:CDS | 50.0% | |
| ! | ACATGTGTTGGCGAGGAGTT+CGG | + | chr7.4:11873741-11873760 | MS.gene052384:intron | 50.0% |
| ! | AGTCCTTTTCAGCGTACCCT+TGG | + | chr7.4:11873705-11873724 | MS.gene052384:intron | 50.0% |
| ! | CATGTGTTGGCGAGGAGTTC+GGG | + | chr7.4:11873742-11873761 | MS.gene052384:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 11872455 | 11874658 | 11872455 | ID=MS.gene052384 |
| chr7.4 | mRNA | 11872455 | 11874658 | 11872455 | ID=MS.gene052384.t1;Parent=MS.gene052384 |
| chr7.4 | exon | 11872455 | 11872510 | 11872455 | ID=MS.gene052384.t1.exon1;Parent=MS.gene052384.t1 |
| chr7.4 | CDS | 11872455 | 11872510 | 11872455 | ID=cds.MS.gene052384.t1;Parent=MS.gene052384.t1 |
| chr7.4 | exon | 11872602 | 11872692 | 11872602 | ID=MS.gene052384.t1.exon2;Parent=MS.gene052384.t1 |
| chr7.4 | CDS | 11872602 | 11872692 | 11872602 | ID=cds.MS.gene052384.t1;Parent=MS.gene052384.t1 |
| chr7.4 | exon | 11872793 | 11872881 | 11872793 | ID=MS.gene052384.t1.exon3;Parent=MS.gene052384.t1 |
| chr7.4 | CDS | 11872793 | 11872881 | 11872793 | ID=cds.MS.gene052384.t1;Parent=MS.gene052384.t1 |
| chr7.4 | exon | 11872927 | 11872960 | 11872927 | ID=MS.gene052384.t1.exon4;Parent=MS.gene052384.t1 |
| chr7.4 | CDS | 11872927 | 11872960 | 11872927 | ID=cds.MS.gene052384.t1;Parent=MS.gene052384.t1 |
| chr7.4 | exon | 11873067 | 11873122 | 11873067 | ID=MS.gene052384.t1.exon5;Parent=MS.gene052384.t1 |
| chr7.4 | CDS | 11873067 | 11873122 | 11873067 | ID=cds.MS.gene052384.t1;Parent=MS.gene052384.t1 |
| chr7.4 | exon | 11874435 | 11874534 | 11874435 | ID=MS.gene052384.t1.exon6;Parent=MS.gene052384.t1 |
| chr7.4 | CDS | 11874435 | 11874534 | 11874435 | ID=cds.MS.gene052384.t1;Parent=MS.gene052384.t1 |
| chr7.4 | exon | 11874605 | 11874658 | 11874605 | ID=MS.gene052384.t1.exon7;Parent=MS.gene052384.t1 |
| chr7.4 | CDS | 11874605 | 11874658 | 11874605 | ID=cds.MS.gene052384.t1;Parent=MS.gene052384.t1 |
| Gene Sequence |
| Protein sequence |
