AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene67357


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene67357.t1 MTR_4g063150 95.708 466 7 1 1 466 1 453 0.0 926
MS.gene67357.t1 MTR_1g067750 39.813 535 239 13 1 458 1 529 1.09e-110 337
MS.gene67357.t1 MTR_7g023750 38.208 547 244 14 1 463 1 537 2.53e-106 326
MS.gene67357.t1 MTR_7g023750 37.937 543 243 14 5 463 2 534 5.43e-104 320
MS.gene67357.t1 MTR_1g067750 38.402 513 233 13 10 445 1 507 1.55e-97 303
MS.gene67357.t1 MTR_7g023750 37.325 501 220 14 47 463 1 491 6.10e-87 275
MS.gene67357.t1 MTR_1g067750 33.260 457 222 13 1 380 1 451 2.85e-59 201
MS.gene67357.t1 MTR_7g023750 32.045 440 206 13 1 357 1 430 6.82e-49 174
MS.gene67357.t1 MTR_1g067750 31.871 433 213 12 1 357 1 427 4.35e-48 171
MS.gene67357.t1 MTR_7g023750 31.579 437 206 13 4 357 1 427 1.61e-46 168
MS.gene67357.t1 MTR_1g068930 46.043 139 74 1 318 455 241 379 7.27e-38 147
MS.gene67357.t1 MTR_1g068930 46.377 138 73 1 319 455 242 379 8.30e-38 147
MS.gene67357.t1 MTR_7g023750 31.378 392 174 15 50 357 4 384 2.52e-30 122
MS.gene67357.t1 MTR_7g102610 33.835 133 85 2 312 441 228 360 1.82e-16 82.8
MS.gene67357.t1 MTR_1g062330 32.624 141 89 2 318 452 82 222 3.07e-14 75.5
MS.gene67357.t1 MTR_1g062330 32.624 141 89 2 318 452 82 222 3.68e-14 75.5
MS.gene67357.t1 MTR_2g084410 32.110 109 68 1 331 433 23 131 6.88e-14 72.4
MS.gene67357.t1 MTR_2g084375 31.193 109 69 1 331 433 9 117 7.26e-14 72.0
MS.gene67357.t1 MTR_2g084425 31.200 125 79 2 326 444 221 344 1.10e-13 73.9
MS.gene67357.t1 MTR_2g084425 31.667 120 75 2 331 444 226 344 1.27e-13 73.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene67357.t1 AT5G59830 44.043 470 214 11 1 466 1 425 5.00e-121 360
MS.gene67357.t1 AT5G59830 44.043 470 214 11 1 466 1 425 5.00e-121 360
MS.gene67357.t1 AT5G59830 44.043 470 214 11 1 466 1 425 5.00e-121 360
MS.gene67357.t1 AT5G13660 46.429 224 116 2 245 466 314 535 1.30e-58 202
MS.gene67357.t1 AT5G13660 46.637 223 116 2 245 466 314 534 1.81e-58 201
MS.gene67357.t1 AT3G53680 41.808 177 94 4 281 449 126 301 4.00e-37 145
MS.gene67357.t1 AT3G53680 41.808 177 94 4 281 449 126 301 4.06e-37 145
MS.gene67357.t1 AT2G37520 46.565 131 69 1 330 459 171 301 5.46e-35 139
MS.gene67357.t1 AT5G13660 36.496 137 83 2 245 379 314 448 4.01e-17 84.0
MS.gene67357.t1 AT5G13660 36.765 136 83 2 245 379 314 447 5.34e-17 83.6
MS.gene67357.t1 AT5G13660 36.765 136 83 2 245 379 314 447 5.34e-17 83.6
MS.gene67357.t1 AT2G36720 37.000 100 60 1 332 428 261 360 9.26e-14 74.3
MS.gene67357.t1 AT2G36720 37.000 100 60 1 332 428 261 360 9.26e-14 74.3
MS.gene67357.t1 AT2G27980 29.310 116 75 2 331 440 377 491 7.74e-11 65.1

Find 104 sgRNAs with CRISPR-Local

Find 185 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAATTAATTGATCGATTATT+TGG 0.067636 4.1:-37265997 MS.gene67357:CDS
TCTGAACCATGTATGAATTT+TGG 0.091302 4.1:-37265832 MS.gene67357:CDS
ATCGATCAATTAATTGATTT+TGG 0.128367 4.1:+37266004 None:intergenic
CGTGAGCTTCAACGGATTTA+TGG 0.136181 4.1:-37264593 MS.gene67357:CDS
CGAAATGCTTTCTGATTTAT+TGG 0.172704 4.1:+37264780 None:intergenic
TTTGATATCTTGTTTATTCT+TGG 0.187546 4.1:+37265321 None:intergenic
GTGTCAAACAATGAACTTTC+AGG 0.198974 4.1:+37264825 None:intergenic
TTCCTGTACTATTTGATAAA+TGG 0.243583 4.1:+37264860 None:intergenic
TATGGAGATGGTGCATCTTT+TGG 0.252084 4.1:-37265883 MS.gene67357:CDS
CTTTACAAAACAAGGGATTC+TGG 0.272026 4.1:-37266257 MS.gene67357:CDS
ATCAGAAAGCATTTCGCATT+TGG 0.289716 4.1:-37264773 MS.gene67357:CDS
AGACCATTTGGCACCCCTTA+TGG 0.300632 4.1:-37265598 MS.gene67357:CDS
TCTATTGCTTGCTTCTTGTT+TGG 0.301219 4.1:+37266117 None:intergenic
TCAAAATAAATGTGATTGTT+TGG 0.311141 4.1:+37264894 None:intergenic
GAACTTCGTGGAATTATAAA+AGG 0.315503 4.1:-37265114 MS.gene67357:CDS
AACCATTGATGAGGTCGTTT+TGG 0.320545 4.1:+37266168 None:intergenic
AAGGGATTCTGGATGGTAAA+AGG 0.325602 4.1:-37266246 MS.gene67357:CDS
GAGATAGCACCCCGTTCATC+TGG 0.326401 4.1:+37265496 None:intergenic
GAGACAAATATAATTTCTTT+TGG 0.334047 4.1:-37265526 MS.gene67357:CDS
AAGATGATCGCAAATCATTA+TGG 0.336592 4.1:-37265901 MS.gene67357:CDS
TGTTATCTACTTTGCCATAA+GGG 0.349075 4.1:+37265584 None:intergenic
TTATTCTTGGACATAGATTC+AGG 0.367033 4.1:+37265334 None:intergenic
TGGTGGGTTCCCAGATGAAC+GGG 0.370149 4.1:-37265506 MS.gene67357:CDS
TTCTGGATGGTAAAAGGATC+TGG 0.378698 4.1:-37266240 MS.gene67357:CDS
GAGACGAGATCTGGATCAAC+AGG 0.382783 4.1:-37265691 MS.gene67357:CDS
ATCAAGCTCCTGACATTAGT+AGG 0.391092 4.1:+37265268 None:intergenic
CAAGAAAGTCAAAGTAAATC+AGG 0.395208 4.1:-37265803 MS.gene67357:CDS
AATTAATTGATCGATTATTT+GGG 0.397385 4.1:-37265996 MS.gene67357:CDS
GTGTTATCTACTTTGCCATA+AGG 0.399952 4.1:+37265583 None:intergenic
ACATTAGTAGGGAAGGTGTT+TGG 0.404286 4.1:+37265280 None:intergenic
GGGGAAGTTGAGACGAGATC+TGG 0.422910 4.1:-37265700 MS.gene67357:CDS
ATCAAATAGTACAGGAATTG+AGG 0.425574 4.1:-37264854 MS.gene67357:CDS
AATACCTACGTTTCGGGCGA+TGG 0.429341 4.1:-37265940 MS.gene67357:CDS
AAAGGAACTACCTATCTTTG+TGG 0.443908 4.1:-37265096 MS.gene67357:CDS
CTTGCAGTCTTTACAAAACA+AGG 0.446967 4.1:-37266265 MS.gene67357:intron
TGACTGACACCCACAAAGAT+AGG 0.451929 4.1:+37265086 None:intergenic
ATATCTACTGGTATGCTAGA+TGG 0.454824 4.1:-37265247 MS.gene67357:CDS
GGGGTGCTATCTCTGTGGGC+AGG 0.457264 4.1:-37265486 MS.gene67357:CDS
GCAAATGAAAGATCTAGTTC+AGG 0.460327 4.1:-37266090 MS.gene67357:CDS
GATGCCCGTATCAGACCATT+TGG 0.468048 4.1:-37265610 MS.gene67357:CDS
ATGGGACTTGCCTATGGCAG+TGG 0.470833 4.1:-37265634 MS.gene67357:CDS
TTCAGTGAAATTGACAGGCC+TGG 0.472169 4.1:+37265966 None:intergenic
GGGTGCTATCTCTGTGGGCA+GGG 0.474025 4.1:-37265485 MS.gene67357:CDS
GTCAGGAGCTTGATATCTAC+TGG 0.476574 4.1:-37265259 MS.gene67357:CDS
TTGGTGGGTTCCCAGATGAA+CGG 0.479213 4.1:-37265507 MS.gene67357:CDS
GATCTACACCATGTCTATCA+TGG 0.482318 4.1:-37265721 MS.gene67357:CDS
TGTCAAACAATGAACTTTCA+GGG 0.482656 4.1:+37264826 None:intergenic
GGGTGCCAAATGGTCTGATA+CGG 0.483789 4.1:+37265605 None:intergenic
TGTAGTTGCAAGTACTCCTT+TGG 0.489839 4.1:-37265371 MS.gene67357:CDS
GATTATTTGGGTCTGAAACC+AGG 0.501220 4.1:-37265984 MS.gene67357:CDS
TTATGGATGCAGGAACTTCG+TGG 0.502569 4.1:-37265126 MS.gene67357:intron
ATCTACACCATGTCTATCAT+GGG 0.502576 4.1:-37265720 MS.gene67357:CDS
CTGTCAAAATTATGTTGCTC+TGG 0.503021 4.1:+37265757 None:intergenic
TTGGAAGGATTATCAAATGC+CGG 0.504114 4.1:+37266198 None:intergenic
TTGCCATAAGGGGTGCCAAA+TGG 0.505578 4.1:+37265595 None:intergenic
CAGCAACACGTGAGCTTCAA+CGG 0.506790 4.1:-37264601 MS.gene67357:CDS
TCTGGAGCTTGCACATCGCT+AGG 0.511091 4.1:+37265775 None:intergenic
GAAGTATGTCTCGGTGGCGC+GGG 0.512915 4.1:-37265215 MS.gene67357:CDS
ACGGGCATCCCCACTGCCAT+AGG 0.513675 4.1:+37265624 None:intergenic
AAGGAACTACCTATCTTTGT+GGG 0.520214 4.1:-37265095 MS.gene67357:CDS
TATAAGATTCAGCAATGGAT+AGG 0.522976 4.1:+37265557 None:intergenic
GTTATCTACTTTGCCATAAG+GGG 0.524676 4.1:+37265585 None:intergenic
GACCATTTATCAAATAGTAC+AGG 0.526696 4.1:-37264862 MS.gene67357:CDS
TGAAGTATGTCTCGGTGGCG+CGG 0.530846 4.1:-37265216 MS.gene67357:CDS
AACCAAAACGACCTCATCAA+TGG 0.536411 4.1:-37266170 MS.gene67357:CDS
GACATTGCCATCCTTGTCAA+AGG 0.543189 4.1:+37265663 None:intergenic
TGGGACTTGCCTATGGCAGT+GGG 0.549439 4.1:-37265633 MS.gene67357:CDS
AAAGCATTTCGCATTTGGAA+AGG 0.553389 4.1:-37264768 MS.gene67357:intron
TGGTTAATTGATGCAACTGA+AGG 0.554560 4.1:-37266150 MS.gene67357:CDS
AACAGCTCATGAGAAAGAGT+TGG 0.557874 4.1:-37265410 MS.gene67357:CDS
ACACCTTCCCTACTAATGTC+AGG 0.559082 4.1:-37265276 MS.gene67357:CDS
ATCGCAAATCATTATGGAGA+TGG 0.565757 4.1:-37265895 MS.gene67357:CDS
TTCGAGTTTGAAAAGCATGC+TGG 0.566420 4.1:-37264933 MS.gene67357:CDS
GGGCAAGCCTTTGACAAGGA+TGG 0.567272 4.1:-37265670 MS.gene67357:CDS
GGTTAATTGATGCAACTGAA+GGG 0.567822 4.1:-37266149 MS.gene67357:CDS
GAACGGGGTGCTATCTCTGT+GGG 0.567929 4.1:-37265490 MS.gene67357:CDS
GCATGTTAGTGACAGAGAGC+CGG 0.576985 4.1:-37266217 MS.gene67357:CDS
GTATGTCTCGGTGGCGCGGG+AGG 0.577134 4.1:-37265212 MS.gene67357:intron
TCTGGATGGTAAAAGGATCT+GGG 0.577994 4.1:-37266239 MS.gene67357:CDS
GGTGCCAAATGGTCTGATAC+GGG 0.578349 4.1:+37265606 None:intergenic
ACAAAACAAGGGATTCTGGA+TGG 0.579040 4.1:-37266253 MS.gene67357:CDS
GTTAATTGATGCAACTGAAG+GGG 0.584842 4.1:-37266148 MS.gene67357:CDS
AGAACCATCGCCCGAAACGT+AGG 0.586722 4.1:+37265936 None:intergenic
AAATTGTGATTGTTCTCCCA+CGG 0.592315 4.1:+37266045 None:intergenic
TCAAGCTCCTGACATTAGTA+GGG 0.592776 4.1:+37265269 None:intergenic
GCTCCTGACATTAGTAGGGA+AGG 0.594371 4.1:+37265273 None:intergenic
AGATAGCACCCCGTTCATCT+GGG 0.596404 4.1:+37265497 None:intergenic
TTGCAGTCTTTACAAAACAA+GGG 0.608181 4.1:-37266264 MS.gene67357:intron
TTTATTATAAGATTCAGCAA+TGG 0.610633 4.1:+37265552 None:intergenic
CAACTTCCCCATGATAGACA+TGG 0.618862 4.1:+37265713 None:intergenic
GCATCAATTAACCATTGATG+AGG 0.620118 4.1:+37266159 None:intergenic
TCAGTCATGTAACTATTCCA+AGG 0.620903 4.1:-37265070 MS.gene67357:intron
ATATGACTGTTCATAGTCTG+TGG 0.620918 4.1:+37265459 None:intergenic
GCCACCGAGACATACTTCAC+AGG 0.621034 4.1:+37265220 None:intergenic
GTCAAACAATGAACTTTCAG+GGG 0.632047 4.1:+37264827 None:intergenic
AACAGGGCAAGCCTTTGACA+AGG 0.649294 4.1:-37265674 MS.gene67357:CDS
TGAACGGGGTGCTATCTCTG+TGG 0.655993 4.1:-37265491 MS.gene67357:CDS
GGTGGGTTCCCAGATGAACG+GGG 0.659474 4.1:-37265505 MS.gene67357:CDS
GGGACTTGCCTATGGCAGTG+GGG 0.687403 4.1:-37265632 MS.gene67357:CDS
TGTTCCTGTGAAGTATGTCT+CGG 0.693290 4.1:-37265224 MS.gene67357:CDS
TCCTGTGAAGTATGTCTCGG+TGG 0.694815 4.1:-37265221 MS.gene67357:CDS
TCTACACCATGTCTATCATG+GGG 0.701654 4.1:-37265719 MS.gene67357:CDS
AACAAGATATCAAATCAACA+AGG 0.715980 4.1:-37265312 MS.gene67357:CDS
AGACGAGATCTGGATCAACA+GGG 0.736721 4.1:-37265690 MS.gene67357:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAAAAAAAACAACT+TGG + chr4.1:37264760-37264779 None:intergenic 10.0%
!! AATTAATTGATCGATTATTT+GGG - chr4.1:37265161-37265180 MS.gene67357:intron 15.0%
!! ATAAAGGAATATAACTATAA+AGG + chr4.1:37266015-37266034 None:intergenic 15.0%
!! TAATATAAAACATCAATCAA+AGG + chr4.1:37266188-37266207 None:intergenic 15.0%
!! TTTATAGTTATATTCCTTTA+TGG - chr4.1:37266014-37266033 MS.gene67357:CDS 15.0%
!!! AAATGTTGAATTTTATTGTT+TGG - chr4.1:37266463-37266482 MS.gene67357:intron 15.0%
!!! AATGTTGAATTTTATTGTTT+GGG - chr4.1:37266464-37266483 MS.gene67357:intron 15.0%
!!! ATTGATGTTTTATATTATCA+GGG - chr4.1:37266191-37266210 MS.gene67357:CDS 15.0%
!!! ATTTTATACAATGCAATAAT+AGG - chr4.1:37264689-37264708 MS.gene67357:intron 15.0%
!!! TCTTTTTTTTAAATGTTCTT+GGG + chr4.1:37264613-37264632 None:intergenic 15.0%
!!! TTCTTTTTTTTAAATGTTCT+TGG + chr4.1:37264614-37264633 None:intergenic 15.0%
!! AAAAAAAAAAAACAACTTGG+TGG + chr4.1:37264757-37264776 None:intergenic 20.0%
!! AAAACCATTATTAAGATGTT+TGG + chr4.1:37266140-37266159 None:intergenic 20.0%
!! ATTGCATTGTATAAAATACA+AGG + chr4.1:37264686-37264705 None:intergenic 20.0%
!! CAATTAATTGATCGATTATT+TGG - chr4.1:37265160-37265179 MS.gene67357:intron 20.0%
!! TCAAAATAAATGTGATTGTT+TGG + chr4.1:37266266-37266285 None:intergenic 20.0%
!! TTGCATTGTATAAAATACAA+GGG + chr4.1:37264685-37264704 None:intergenic 20.0%
!! TTTATTATAAGATTCAGCAA+TGG + chr4.1:37265608-37265627 None:intergenic 20.0%
!!! AATCACATTTATTTTGAGAA+TGG - chr4.1:37266269-37266288 MS.gene67357:intron 20.0%
!!! ACAAATATAATTTCTTTTGG+TGG - chr4.1:37265634-37265653 MS.gene67357:CDS 20.0%
!!! ATCACATTTATTTTGAGAAT+GGG - chr4.1:37266270-37266289 MS.gene67357:intron 20.0%
!!! ATCGATCAATTAATTGATTT+TGG + chr4.1:37265156-37265175 None:intergenic 20.0%
!!! CAAATATAATTTCTTTTGGT+GGG - chr4.1:37265635-37265654 MS.gene67357:CDS 20.0%
!!! GAGACAAATATAATTTCTTT+TGG - chr4.1:37265631-37265650 MS.gene67357:CDS 20.0%
!!! GATTGATGTTTTATATTATC+AGG - chr4.1:37266190-37266209 MS.gene67357:CDS 20.0%
!!! TTTGATATCTTGTTTATTCT+TGG + chr4.1:37265839-37265858 None:intergenic 20.0%
! AACAAGATATCAAATCAACA+AGG - chr4.1:37265845-37265864 MS.gene67357:CDS 25.0%
! AATTGAAAAAATCGACAACA+AGG + chr4.1:37265982-37266001 None:intergenic 25.0%
! AGACAGTGATAAGTTAATAA+TGG + chr4.1:37264583-37264602 None:intergenic 25.0%
! GCAAGAGTTACAAAAAAAAT+GGG + chr4.1:37266511-37266530 None:intergenic 25.0%
! TATTAACTTATCACTGTCTA+AGG - chr4.1:37264584-37264603 MS.gene67357:CDS 25.0%
! TGAAAAAAATACCTACGTTT+CGG - chr4.1:37265210-37265229 MS.gene67357:intron 25.0%
! TGCATTGTATAAAATACAAG+GGG + chr4.1:37264684-37264703 None:intergenic 25.0%
! TTCCTGTACTATTTGATAAA+TGG + chr4.1:37266300-37266319 None:intergenic 25.0%
!! AAATGTAAATTTTACTCCGT+GGG - chr4.1:37265096-37265115 MS.gene67357:CDS 25.0%
!!! GATCAATTAATTGATTTTGG+TGG + chr4.1:37265153-37265172 None:intergenic 25.0%
!!! TTTTTTTCAGTGAAATTGAC+AGG + chr4.1:37265199-37265218 None:intergenic 25.0%
AAGATGATCGCAAATCATTA+TGG - chr4.1:37265256-37265275 MS.gene67357:CDS 30.0%
ATCAAATAGTACAGGAATTG+AGG - chr4.1:37266303-37266322 MS.gene67357:intron 30.0%
ATCAATCAAAGGTAATCTAC+AGG + chr4.1:37266177-37266196 None:intergenic 30.0%
CAAGAAAGTCAAAGTAAATC+AGG - chr4.1:37265354-37265373 MS.gene67357:CDS 30.0%
CGAAATGCTTTCTGATTTAT+TGG + chr4.1:37266380-37266399 None:intergenic 30.0%
CTGACCAAACATCTTAATAA+TGG - chr4.1:37266133-37266152 MS.gene67357:CDS 30.0%
GAAAAAAATACCTACGTTTC+GGG - chr4.1:37265211-37265230 MS.gene67357:intron 30.0%
GAACTTCGTGGAATTATAAA+AGG - chr4.1:37266043-37266062 MS.gene67357:CDS 30.0%
GACCATTTATCAAATAGTAC+AGG - chr4.1:37266295-37266314 MS.gene67357:intron 30.0%
GGCAAGAGTTACAAAAAAAA+TGG + chr4.1:37266512-37266531 None:intergenic 30.0%
TAGTCTGTTTGTGCTTAAAA+AGG + chr4.1:37266430-37266449 None:intergenic 30.0%
TATAAAATACAAGGGGAAGA+GGG + chr4.1:37264677-37264696 None:intergenic 30.0%
TATAAGATTCAGCAATGGAT+AGG + chr4.1:37265603-37265622 None:intergenic 30.0%
TGTCAAACAATGAACTTTCA+GGG + chr4.1:37266334-37266353 None:intergenic 30.0%
TGTTATCTACTTTGCCATAA+GGG + chr4.1:37265576-37265595 None:intergenic 30.0%
TTAATCAATCCAACTGACAT+AGG + chr4.1:37264802-37264821 None:intergenic 30.0%
TTATATTCCTTTATGGATGC+AGG - chr4.1:37266021-37266040 MS.gene67357:CDS 30.0%
TTATTCTTGGACATAGATTC+AGG + chr4.1:37265826-37265845 None:intergenic 30.0%
TTGCAGTCTTTACAAAACAA+GGG - chr4.1:37264893-37264912 MS.gene67357:CDS 30.0%
TTTAAGCACAAACAGACTAA+CGG - chr4.1:37266431-37266450 MS.gene67357:intron 30.0%
! CAAATGTAAATTTTACTCCG+TGG - chr4.1:37265095-37265114 MS.gene67357:CDS 30.0%
! CTGAACCATGTATGAATTTT+GGG - chr4.1:37265326-37265345 MS.gene67357:CDS 30.0%
! GACACAATCCAAACAATTTT+TGG - chr4.1:37266350-37266369 MS.gene67357:intron 30.0%
! TCTGAACCATGTATGAATTT+TGG - chr4.1:37265325-37265344 MS.gene67357:CDS 30.0%
! TGAACCATGTATGAATTTTG+GGG - chr4.1:37265327-37265346 MS.gene67357:CDS 30.0%
!! ATTAATTGATTTTGGTGGCT+TGG + chr4.1:37265148-37265167 None:intergenic 30.0%
!! TTAATTGATTTTGGTGGCTT+GGG + chr4.1:37265147-37265166 None:intergenic 30.0%
!! TTTTATTGTTTGGGCTTGTT+TGG - chr4.1:37266473-37266492 MS.gene67357:intron 30.0%
!!! GATGGCAATGTCATTTTAAT+GGG - chr4.1:37265505-37265524 MS.gene67357:CDS 30.0%
!!! TTTTTTGTAACTCTTGCCAA+TGG - chr4.1:37266514-37266533 MS.gene67357:intron 30.0%
AAAGGAACTACCTATCTTTG+TGG - chr4.1:37266061-37266080 MS.gene67357:CDS 35.0%
AAATTGTGATTGTTCTCCCA+CGG + chr4.1:37265115-37265134 None:intergenic 35.0%
AAGGAACTACCTATCTTTGT+GGG - chr4.1:37266062-37266081 MS.gene67357:CDS 35.0%
ATAAAATACAAGGGGAAGAG+GGG + chr4.1:37264676-37264695 None:intergenic 35.0%
ATATCTACTGGTATGCTAGA+TGG - chr4.1:37265910-37265929 MS.gene67357:CDS 35.0%
ATATGACTGTTCATAGTCTG+TGG + chr4.1:37265701-37265720 None:intergenic 35.0%
ATCCAACTGACATAGGATAA+AGG + chr4.1:37264795-37264814 None:intergenic 35.0%
ATCGCAAATCATTATGGAGA+TGG - chr4.1:37265262-37265281 MS.gene67357:CDS 35.0%
ATCTACACCATGTCTATCAT+GGG - chr4.1:37265437-37265456 MS.gene67357:CDS 35.0%
ATTCCCCCAAAATTCATACA+TGG + chr4.1:37265334-37265353 None:intergenic 35.0%
CTGTCAAAATTATGTTGCTC+TGG + chr4.1:37265403-37265422 None:intergenic 35.0%
CTGTTTGTGCTTAAAAAGGT+CGG + chr4.1:37266426-37266445 None:intergenic 35.0%
CTTGCAGTCTTTACAAAACA+AGG - chr4.1:37264892-37264911 MS.gene67357:CDS 35.0%
CTTTACAAAACAAGGGATTC+TGG - chr4.1:37264900-37264919 MS.gene67357:CDS 35.0%
GCATCAATTAACCATTGATG+AGG + chr4.1:37265001-37265020 None:intergenic 35.0%
GGTTAATTGATGCAACTGAA+GGG - chr4.1:37265008-37265027 MS.gene67357:intron 35.0%
GTATAAAATACAAGGGGAAG+AGG + chr4.1:37264678-37264697 None:intergenic 35.0%
GTCAAACAATGAACTTTCAG+GGG + chr4.1:37266333-37266352 None:intergenic 35.0%
GTGTCAAACAATGAACTTTC+AGG + chr4.1:37266335-37266354 None:intergenic 35.0%
GTGTTATCTACTTTGCCATA+AGG + chr4.1:37265577-37265596 None:intergenic 35.0%
GTTAATTGATGCAACTGAAG+GGG - chr4.1:37265009-37265028 MS.gene67357:intron 35.0%
GTTATCTACTTTGCCATAAG+GGG + chr4.1:37265575-37265594 None:intergenic 35.0%
TCAGTCATGTAACTATTCCA+AGG - chr4.1:37266087-37266106 MS.gene67357:CDS 35.0%
TCTATTGCTTGCTTCTTGTT+TGG + chr4.1:37265043-37265062 None:intergenic 35.0%
TGGTTAATTGATGCAACTGA+AGG - chr4.1:37265007-37265026 MS.gene67357:intron 35.0%
TGTTTGTGCTTAAAAAGGTC+GGG + chr4.1:37266425-37266444 None:intergenic 35.0%
TTCCAAGGTTAGTAATCCAT+TGG - chr4.1:37266102-37266121 MS.gene67357:CDS 35.0%
TTGGAAGGATTATCAAATGC+CGG + chr4.1:37264962-37264981 None:intergenic 35.0%
TTGGTGCACCAAAAATTGTT+TGG + chr4.1:37266361-37266380 None:intergenic 35.0%
! AAAGCATTTCGCATTTGGAA+AGG - chr4.1:37266389-37266408 MS.gene67357:intron 35.0%
! GAAATGATTCTGAAGACCAT+TGG + chr4.1:37266533-37266552 None:intergenic 35.0%
! GAACCATGTATGAATTTTGG+GGG - chr4.1:37265328-37265347 MS.gene67357:CDS 35.0%
! GCAAATGAAAGATCTAGTTC+AGG - chr4.1:37265067-37265086 MS.gene67357:intron 35.0%
!! AATTTTGACAGGCAGAGTAT+GGG - chr4.1:37265412-37265431 MS.gene67357:CDS 35.0%
!! ATCAGAAAGCATTTCGCATT+TGG - chr4.1:37266384-37266403 MS.gene67357:intron 35.0%
!! ATTTTAATGGGACTTGCCTA+TGG - chr4.1:37265517-37265536 MS.gene67357:CDS 35.0%
!! CAGAGCAACATAATTTTGAC+AGG - chr4.1:37265401-37265420 MS.gene67357:CDS 35.0%
!! TAATTTTGACAGGCAGAGTA+TGG - chr4.1:37265411-37265430 MS.gene67357:CDS 35.0%
!! TACCAATGGATTACTAACCT+TGG + chr4.1:37266107-37266126 None:intergenic 35.0%
!!! GGATGGCAATGTCATTTTAA+TGG - chr4.1:37265504-37265523 MS.gene67357:CDS 35.0%
AACAGCTCATGAGAAAGAGT+TGG - chr4.1:37265747-37265766 MS.gene67357:CDS 40.0%
AACCAAAACGACCTCATCAA+TGG - chr4.1:37264987-37265006 MS.gene67357:intron 40.0%
AAGGGATTCTGGATGGTAAA+AGG - chr4.1:37264911-37264930 MS.gene67357:CDS 40.0%
ACAAAACAAGGGATTCTGGA+TGG - chr4.1:37264904-37264923 MS.gene67357:CDS 40.0%
ATCAAGCTCCTGACATTAGT+AGG + chr4.1:37265892-37265911 None:intergenic 40.0%
CAACTGACATAGGATAAAGG+AGG + chr4.1:37264792-37264811 None:intergenic 40.0%
CTCCTTTATCCTATGTCAGT+TGG - chr4.1:37264790-37264809 MS.gene67357:CDS 40.0%
GATCTACACCATGTCTATCA+TGG - chr4.1:37265436-37265455 MS.gene67357:CDS 40.0%
TCAAGCTCCTGACATTAGTA+GGG + chr4.1:37265891-37265910 None:intergenic 40.0%
TCTACACCATGTCTATCATG+GGG - chr4.1:37265438-37265457 MS.gene67357:CDS 40.0%
TCTGGATGGTAAAAGGATCT+GGG - chr4.1:37264918-37264937 MS.gene67357:CDS 40.0%
TGTAGTTGCAAGTACTCCTT+TGG - chr4.1:37265786-37265805 MS.gene67357:CDS 40.0%
TGTTCCTGTGAAGTATGTCT+CGG - chr4.1:37265933-37265952 MS.gene67357:CDS 40.0%
TTCTGGATGGTAAAAGGATC+TGG - chr4.1:37264917-37264936 MS.gene67357:CDS 40.0%
TTGGTCAGAGTGTATACCAA+TGG + chr4.1:37266121-37266140 None:intergenic 40.0%
! AACCATTGATGAGGTCGTTT+TGG + chr4.1:37264992-37265011 None:intergenic 40.0%
! GATTATTTGGGTCTGAAACC+AGG - chr4.1:37265173-37265192 MS.gene67357:intron 40.0%
! TATGGAGATGGTGCATCTTT+TGG - chr4.1:37265274-37265293 MS.gene67357:CDS 40.0%
! TTCGAGTTTGAAAAGCATGC+TGG - chr4.1:37266224-37266243 MS.gene67357:CDS 40.0%
!! ACATTAGTAGGGAAGGTGTT+TGG + chr4.1:37265880-37265899 None:intergenic 40.0%
!!! AGGTCGTTTTGGTTCGATTT+TGG + chr4.1:37264981-37265000 None:intergenic 40.0%
!!! CGTTTTGGTTCGATTTTGGA+AGG + chr4.1:37264977-37264996 None:intergenic 40.0%
!!! GGCTTTTTTGTTGTCACCAA+AGG + chr4.1:37265805-37265824 None:intergenic 40.0%
AAACAGACTAACGGCTGCAT+AGG - chr4.1:37266440-37266459 MS.gene67357:intron 45.0%
ACACCTTCCCTACTAATGTC+AGG - chr4.1:37265881-37265900 MS.gene67357:CDS 45.0%
AGACGAGATCTGGATCAACA+GGG - chr4.1:37265467-37265486 MS.gene67357:CDS 45.0%
CAACTTCCCCATGATAGACA+TGG + chr4.1:37265447-37265466 None:intergenic 45.0%
CGAAGTTCCTGCATCCATAA+AGG + chr4.1:37266031-37266050 None:intergenic 45.0%
GACATTGCCATCCTTGTCAA+AGG + chr4.1:37265497-37265516 None:intergenic 45.0%
GTCAGGAGCTTGATATCTAC+TGG - chr4.1:37265898-37265917 MS.gene67357:CDS 45.0%
TGACTGACACCCACAAAGAT+AGG + chr4.1:37266074-37266093 None:intergenic 45.0%
TTATGGATGCAGGAACTTCG+TGG - chr4.1:37266031-37266050 MS.gene67357:CDS 45.0%
TTCAGTGAAATTGACAGGCC+TGG + chr4.1:37265194-37265213 None:intergenic 45.0%
! CGTGAGCTTCAACGGATTTA+TGG - chr4.1:37266564-37266583 MS.gene67357:intron 45.0%
AACAGGGCAAGCCTTTGACA+AGG - chr4.1:37265483-37265502 MS.gene67357:CDS 50.0%
AATACCTACGTTTCGGGCGA+TGG - chr4.1:37265217-37265236 MS.gene67357:CDS 50.0%
AGACCATTTGGCACCCCTTA+TGG - chr4.1:37265559-37265578 MS.gene67357:CDS 50.0%
AGATAGCACCCCGTTCATCT+GGG + chr4.1:37265663-37265682 None:intergenic 50.0%
CAGCAACACGTGAGCTTCAA+CGG - chr4.1:37266556-37266575 MS.gene67357:intron 50.0%
GAGACGAGATCTGGATCAAC+AGG - chr4.1:37265466-37265485 MS.gene67357:CDS 50.0%
GATGCCCGTATCAGACCATT+TGG - chr4.1:37265547-37265566 MS.gene67357:CDS 50.0%
GCATGTTAGTGACAGAGAGC+CGG - chr4.1:37264940-37264959 MS.gene67357:CDS 50.0%
GCTCCTGACATTAGTAGGGA+AGG + chr4.1:37265887-37265906 None:intergenic 50.0%
GGGTGCCAAATGGTCTGATA+CGG + chr4.1:37265555-37265574 None:intergenic 50.0%
GGTGCCAAATGGTCTGATAC+GGG + chr4.1:37265554-37265573 None:intergenic 50.0%
GTGGTGTAAGTTTCCCGACA+TGG + chr4.1:37264738-37264757 None:intergenic 50.0%
TCCCGACATGGCAGAGTATA+GGG + chr4.1:37264726-37264745 None:intergenic 50.0%
TCCTGTGAAGTATGTCTCGG+TGG - chr4.1:37265936-37265955 MS.gene67357:CDS 50.0%
TTCCCGACATGGCAGAGTAT+AGG + chr4.1:37264727-37264746 None:intergenic 50.0%
!! TTGCCATAAGGGGTGCCAAA+TGG + chr4.1:37265565-37265584 None:intergenic 50.0%
!! TTGGTGGGTTCCCAGATGAA+CGG - chr4.1:37265650-37265669 MS.gene67357:CDS 50.0%
AGAACCATCGCCCGAAACGT+AGG + chr4.1:37265224-37265243 None:intergenic 55.0%
ATGGCAGAGTATAGGGGGGA+AGG + chr4.1:37264719-37264738 None:intergenic 55.0%
ATGGGACTTGCCTATGGCAG+TGG - chr4.1:37265523-37265542 MS.gene67357:CDS 55.0%
CCCCCTATACTCTGCCATGT+CGG - chr4.1:37264721-37264740 MS.gene67357:intron 55.0%
CCCCTATACTCTGCCATGTC+GGG - chr4.1:37264722-37264741 MS.gene67357:intron 55.0%
CCCGACATGGCAGAGTATAG+GGG + chr4.1:37264725-37264744 None:intergenic 55.0%
CCGACATGGCAGAGTATAGG+GGG + chr4.1:37264724-37264743 None:intergenic 55.0%
CGACATGGCAGAGTATAGGG+GGG + chr4.1:37264723-37264742 None:intergenic 55.0%
GAGATAGCACCCCGTTCATC+TGG + chr4.1:37265664-37265683 None:intergenic 55.0%
GCCACCGAGACATACTTCAC+AGG + chr4.1:37265940-37265959 None:intergenic 55.0%
GGGCAAGCCTTTGACAAGGA+TGG - chr4.1:37265487-37265506 MS.gene67357:CDS 55.0%
GGGGAAGTTGAGACGAGATC+TGG - chr4.1:37265457-37265476 MS.gene67357:CDS 55.0%
TGAAGTATGTCTCGGTGGCG+CGG - chr4.1:37265941-37265960 MS.gene67357:CDS 55.0%
TGGCAGAGTATAGGGGGGAA+GGG + chr4.1:37264718-37264737 None:intergenic 55.0%
TGGGACTTGCCTATGGCAGT+GGG - chr4.1:37265524-37265543 MS.gene67357:CDS 55.0%
! GAACGGGGTGCTATCTCTGT+GGG - chr4.1:37265667-37265686 MS.gene67357:CDS 55.0%
! TCTGGAGCTTGCACATCGCT+AGG + chr4.1:37265385-37265404 None:intergenic 55.0%
! TGAACGGGGTGCTATCTCTG+TGG - chr4.1:37265666-37265685 MS.gene67357:CDS 55.0%
!! TGGTGGGTTCCCAGATGAAC+GGG - chr4.1:37265651-37265670 MS.gene67357:CDS 55.0%
GAAGTATGTCTCGGTGGCGC+GGG - chr4.1:37265942-37265961 MS.gene67357:CDS 60.0%
GGGACTTGCCTATGGCAGTG+GGG - chr4.1:37265525-37265544 MS.gene67357:CDS 60.0%
! GGGTGCTATCTCTGTGGGCA+GGG - chr4.1:37265672-37265691 MS.gene67357:CDS 60.0%
! GGTGGGTTCCCAGATGAACG+GGG - chr4.1:37265652-37265671 MS.gene67357:CDS 60.0%
ACGGGCATCCCCACTGCCAT+AGG + chr4.1:37265536-37265555 None:intergenic 65.0%
GTGGCGCGGGAGGTAAGTGT+TGG - chr4.1:37265955-37265974 MS.gene67357:CDS 65.0%
! GGGGTGCTATCTCTGTGGGC+AGG - chr4.1:37265671-37265690 MS.gene67357:CDS 65.0%
GTATGTCTCGGTGGCGCGGG+AGG - chr4.1:37265945-37265964 MS.gene67357:CDS 70.0%


Chromosome Type Strat End Strand Name
chr4.1 gene 37264571 37266608 37264571 ID=MS.gene67357
chr4.1 mRNA 37264571 37266608 37264571 ID=MS.gene67357.t1;Parent=MS.gene67357
chr4.1 exon 37266606 37266608 37266606 ID=MS.gene67357.t1.exon1;Parent=MS.gene67357.t1
chr4.1 CDS 37266606 37266608 37266606 ID=cds.MS.gene67357.t1;Parent=MS.gene67357.t1
chr4.1 exon 37265213 37266280 37265213 ID=MS.gene67357.t1.exon2;Parent=MS.gene67357.t1
chr4.1 CDS 37265213 37266280 37265213 ID=cds.MS.gene67357.t1;Parent=MS.gene67357.t1
chr4.1 exon 37265071 37265136 37265071 ID=MS.gene67357.t1.exon3;Parent=MS.gene67357.t1
chr4.1 CDS 37265071 37265136 37265071 ID=cds.MS.gene67357.t1;Parent=MS.gene67357.t1
chr4.1 exon 37264769 37264967 37264769 ID=MS.gene67357.t1.exon4;Parent=MS.gene67357.t1
chr4.1 CDS 37264769 37264967 37264769 ID=cds.MS.gene67357.t1;Parent=MS.gene67357.t1
chr4.1 exon 37264571 37264635 37264571 ID=MS.gene67357.t1.exon5;Parent=MS.gene67357.t1
chr4.1 CDS 37264571 37264635 37264571 ID=cds.MS.gene67357.t1;Parent=MS.gene67357.t1
Gene Sequence

>MS.gene67357

ATGGTACTACCATTATTAACTTATCACTGTCTAAGGTAACCCAAGAACATTTAAAAAAAAGAATCACTTGTGAAATTCACGCAATTATTTAATTTTAATTAACCCCTCTTCCCCTTGTATTTTATACAATGCAATAATAGGTCGCCCTTCCCCCCTATACTCTGCCATGTCGGGAAACTTACACCACCAAGTTGTTTTTTTTTTTTTTTTAAAATTATCCTCCTTTATCCTATGTCAGTTGGATTGATTAAATGAAATAAAGAAATAGACTTATTTTAAATGTACTATTGTATATGAAGCATTGTTGATTTATTTACTTTTCTTGCAGTCTTTACAAAACAAGGGATTCTGGATGGTAAAAGGATCTGGGCATGTTAGTGACAGAGAGCCGGCATTTGATAATCCTTCCAAAATCGAACCAAAACGACCTCATCAATGGTTAATTGATGCAACTGAAGGGGATTTTTTGCCAAACAAGAAGCAAGCAATAGAAGATGCAAATGAAAGATCTAGTTCAGGATTTTCAAATGTAAATTTTACTCCGTGGGAGAACAATCACAATTTTCATTCAGACCCAAGCCACCAAAATCAATTAATTGATCGATTATTTGGGTCTGAAACCAGGCCTGTCAATTTCACTGAAAAAAATACCTACGTTTCGGGCGATGGTTCTGATGTGAGATCAAAGATGATCGCAAATCATTATGGAGATGGTGCATCTTTTGGCTTGTCTATATCTCATTCTACTGAAGATTCTGAACCATGTATGAATTTTGGGGGAATCAAGAAAGTCAAAGTAAATCAGGTTAATCCTAGCGATGTGCAAGCTCCAGAGCAACATAATTTTGACAGGCAGAGTATGGGTGATCTACACCATGTCTATCATGGGGAAGTTGAGACGAGATCTGGATCAACAGGGCAAGCCTTTGACAAGGATGGCAATGTCATTTTAATGGGACTTGCCTATGGCAGTGGGGATGCCCGTATCAGACCATTTGGCACCCCTTATGGCAAAGTAGATAACACAGTCCTATCCATTGCTGAATCTTATAATAAAGACGAGACAAATATAATTTCTTTTGGTGGGTTCCCAGATGAACGGGGTGCTATCTCTGTGGGCAGGGCTGCCACAGACTATGAACAGTCATATAATCAATCATCAGTTCATGTGTCAACAACAGCTCATGAGAAAGAGTTGGATGCATCAAATTCTGATGTAGTTGCAAGTACTCCTTTGGTGACAACAAAAAAGCCTGAATCTATGTCCAAGAATAAACAAGATATCAAATCAACAAGGAAAGAATCTCCAAACACCTTCCCTACTAATGTCAGGAGCTTGATATCTACTGGTATGCTAGATGGTGTTCCTGTGAAGTATGTCTCGGTGGCGCGGGAGGTAAGTGTTGGTCCTTGTTGTCGATTTTTTCAATTTGAAAATGCTCCTTTATAGTTATATTCCTTTATGGATGCAGGAACTTCGTGGAATTATAAAAGGAACTACCTATCTTTGTGGGTGTCAGTCATGTAACTATTCCAAGGTTAGTAATCCATTGGTATACACTCTGACCAAACATCTTAATAATGGTTTTCAAATTTTTTATAGCCTGTAGATTACCTTTGATTGATGTTTTATATTATCAGGGTCTGAATGCTTTCGAGTTTGAAAAGCATGCTGGTTGCAAATCAAAACATCCAAACAATCACATTTATTTTGAGAATGGGAAGACCATTTATCAAATAGTACAGGAATTGAGGAGTACCCCTGAAAGTTCATTGTTTGACACAATCCAAACAATTTTTGGTGCACCAATAAATCAGAAAGCATTTCGCATTTGGAAAGGTAAAGAAATTCCCGACCTTTTTAAGCACAAACAGACTAACGGCTGCATAGGAAATGTTGAATTTTATTGTTTGGGCTTGTTTGGTATGTCACTAATCCCATTTTTTTTGTAACTCTTGCCAATGGTCTTCAGAATCATTTCAAGCAGCAACACGTGAGCTTCAACGGATTTATGGAAATGAAAAACGTAACCTCTAA

Protein sequence

>MS.gene67357.t1

MSLQNKGFWMVKGSGHVSDREPAFDNPSKIEPKRPHQWLIDATEGDFLPNKKQAIEDANERSSSGFSNVNFTPWENNHNFHSDPSHQNQLIDRLFGSETRPVNFTEKNTYVSGDGSDVRSKMIANHYGDGASFGLSISHSTEDSEPCMNFGGIKKVKVNQVNPSDVQAPEQHNFDRQSMGDLHHVYHGEVETRSGSTGQAFDKDGNVILMGLAYGSGDARIRPFGTPYGKVDNTVLSIAESYNKDETNIISFGGFPDERGAISVGRAATDYEQSYNQSSVHVSTTAHEKELDASNSDVVASTPLVTTKKPESMSKNKQDIKSTRKESPNTFPTNVRSLISTGMLDGVPVKYVSVAREELRGIIKGTTYLCGCQSCNYSKGLNAFEFEKHAGCKSKHPNNHIYFENGKTIYQIVQELRSTPESSLFDTIQTIFGAPINQKAFRIWKESFQAATRELQRIYGNEKRNL