AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene68442


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene68442.t1 MTR_1g090640 97.409 849 20 2 1 847 1 849 0.0 1700
MS.gene68442.t1 MTR_1g057150 47.806 866 372 23 1 847 1 805 0.0 654
MS.gene68442.t1 MTR_2g038200 34.487 751 382 25 1 694 1 698 1.10e-102 341
MS.gene68442.t1 MTR_4g129230 30.345 870 449 34 1 784 1 799 3.68e-86 296
MS.gene68442.t1 MTR_4g127290 63.068 176 50 5 1 167 1 170 1.29e-53 200
MS.gene68442.t1 MTR_3g464150 26.545 874 505 31 11 787 10 843 9.14e-49 187
MS.gene68442.t1 MTR_1183s0010 59.155 142 45 3 709 845 148 281 2.15e-42 156
MS.gene68442.t1 MTR_1183s0010 70.423 71 18 2 99 167 28 97 6.20e-19 88.6
MS.gene68442.t1 MTR_5g071060 25.508 886 499 33 11 784 10 846 3.20e-38 154
MS.gene68442.t1 MTR_5g071060 25.171 878 479 32 11 784 10 813 9.42e-36 146
MS.gene68442.t1 MTR_1384s0010 55.556 126 31 4 1 123 1 104 9.17e-31 117
MS.gene68442.t1 MTR_3g070850 28.571 413 226 15 11 393 10 383 3.26e-26 116
MS.gene68442.t1 MTR_4g109450 20.927 798 502 30 24 784 17 722 3.64e-20 96.7
MS.gene68442.t1 MTR_4g109450 20.927 798 502 30 24 784 17 722 3.84e-20 96.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene68442.t1 AT3G52490 46.118 863 394 25 1 845 1 810 0.0 636
MS.gene68442.t1 AT5G57710 32.028 843 435 30 1 784 1 764 3.14e-98 328
MS.gene68442.t1 AT5G57130 37.585 588 251 18 1 490 1 570 2.52e-90 308
MS.gene68442.t1 AT4G29920 36.607 560 271 17 1 495 1 541 4.66e-89 304
MS.gene68442.t1 AT4G29920 36.331 556 275 16 1 495 1 538 6.60e-89 303
MS.gene68442.t1 AT4G30350 31.152 825 425 28 1 786 1 721 8.81e-85 290
MS.gene68442.t1 AT2G29970 26.322 832 491 26 11 781 10 780 2.28e-55 207
MS.gene68442.t1 AT1G07200 25.872 831 489 28 11 784 10 770 1.12e-47 184
MS.gene68442.t1 AT2G40130 31.990 397 221 14 11 382 10 382 7.51e-36 146
MS.gene68442.t1 AT2G40130 31.990 397 221 14 11 382 10 382 8.63e-36 146
MS.gene68442.t1 AT1G74310 25.806 310 195 11 11 313 4 285 6.32e-16 83.2
MS.gene68442.t1 AT1G74310 25.806 310 195 11 11 313 4 285 6.58e-16 82.8

Find 129 sgRNAs with CRISPR-Local

Find 161 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACCCTTCCCTAGAAACTATT+TGG 0.153510 1.1:-66112552 MS.gene68442:CDS
AGAGGGGTTATTCTTTATTT+AGG 0.203554 1.1:-66112757 MS.gene68442:CDS
TCTCGATCGTTCCGCGTCTT+TGG 0.250193 1.1:+66113313 None:intergenic
AGGCTTAAGGCTAAGTTCTT+TGG 0.260826 1.1:+66113086 None:intergenic
GAGTGGTAGATTATGGCTTA+TGG 0.282735 1.1:-66112617 MS.gene68442:CDS
TCCAACAAAGCCAACTAAAT+TGG 0.291498 1.1:-66111653 MS.gene68442:CDS
TCCTTCACTTTCCAATGCTT+TGG 0.297130 1.1:-66113364 MS.gene68442:CDS
TATAATAACTCACACTCTTT+TGG 0.298041 1.1:+66111603 None:intergenic
AAGCCTTGTGAAAAGCTATA+TGG 0.299255 1.1:-66112782 MS.gene68442:CDS
TCACTTGAAGAAGCTGAGTT+TGG 0.312758 1.1:+66111471 None:intergenic
GAAGCTCCCAAATAGTTTCT+AGG 0.313524 1.1:+66112545 None:intergenic
TGAAATGGTTGTTTGAGTTT+TGG 0.332695 1.1:-66112729 MS.gene68442:CDS
TGTAACAACTTTATGACAAT+TGG 0.336252 1.1:-66111165 MS.gene68442:CDS
CTATTGTTCTGTTGAGCATA+TGG 0.340911 1.1:-66112677 MS.gene68442:CDS
CAAATCTTGTTTGTCAAGAA+TGG 0.341068 1.1:+66111740 None:intergenic
TCCACACAAAGTCCATTATT+AGG 0.343699 1.1:-66113405 MS.gene68442:CDS
CTGCCAACAGGAATTGTAAA+AGG 0.345389 1.1:+66112520 None:intergenic
GCTGAGTTTGGACTTGAGTT+AGG 0.348418 1.1:+66111483 None:intergenic
TGTTGAGTGAATTAGTAAAA+AGG 0.353427 1.1:-66112993 MS.gene68442:CDS
AGTAGAGTTATGAGAGAAGC+TGG 0.362568 1.1:-66113210 MS.gene68442:CDS
GCCAATTTAGTTGGCTTTGT+TGG 0.372056 1.1:+66111652 None:intergenic
TCATTGTTAACACAATCTAT+AGG 0.381114 1.1:+66113030 None:intergenic
TTTATTTAGGTGATTTGAAA+TGG 0.382295 1.1:-66112744 MS.gene68442:CDS
TTCCTTTGAGATATTCTCTC+TGG 0.389830 1.1:+66111212 None:intergenic
TCAAGCTAAGGAGAGAAGTA+TGG 0.390308 1.1:-66112345 MS.gene68442:CDS
GCCATGCTTGCAACTTCAAC+AGG 0.392420 1.1:-66113525 MS.gene68442:CDS
AGTTGATCACTTTACTCAAA+AGG 0.394813 1.1:-66110980 MS.gene68442:CDS
AGTGGTAGATTATGGCTTAT+GGG 0.396440 1.1:-66112616 MS.gene68442:CDS
TGCAGCTTTCAAACGTGCTC+AGG 0.397418 1.1:-66113340 MS.gene68442:CDS
AAGTAATCTAAACCTCTCTT+TGG 0.399086 1.1:-66110785 MS.gene68442:CDS
AGCACTTATTTGCAAAGGTT+TGG 0.400652 1.1:-66111057 MS.gene68442:CDS
TTGAGGAATCATCATTTCCT+AGG 0.403714 1.1:+66111124 None:intergenic
TTAAGGATCTCTGCAAGAAA+TGG 0.403868 1.1:-66111797 MS.gene68442:CDS
TCCTCATAGAGTGTTCTTCA+TGG 0.406650 1.1:-66111016 MS.gene68442:CDS
AAATTATAGGCCAATTTAGT+TGG 0.410863 1.1:+66111643 None:intergenic
GTTAACACAATCTATAGGTT+TGG 0.415012 1.1:+66113035 None:intergenic
GAATATTGAGGACCTAATAA+TGG 0.416354 1.1:+66113393 None:intergenic
TTTGTTGAAGAAACTTCAAT+TGG 0.417218 1.1:+66113138 None:intergenic
CCCTTCCCTAGAAACTATTT+GGG 0.418380 1.1:-66112551 MS.gene68442:CDS
ATAGGAAAATGCAAGACTTA+AGG 0.420370 1.1:-66111814 MS.gene68442:intron
GCCTAAGTTTGAACTTTGAC+AGG 0.423851 1.1:-66112492 MS.gene68442:intron
AAGCCTCAAGTTCTTAGCCT+TGG 0.424000 1.1:-66113069 MS.gene68442:CDS
GTGATGGAAAGGTTTGAGAT+AGG 0.428812 1.1:-66112910 MS.gene68442:CDS
CCTCAAGTTCTTAGCCTTGG+TGG 0.431448 1.1:-66113066 MS.gene68442:CDS
TCAAGTGAGGAAAATGAAGT+TGG 0.432178 1.1:+66111690 None:intergenic
TTTCAAGATAAAGTAGGAGT+TGG 0.433658 1.1:-66112302 MS.gene68442:CDS
GGCTAAGAACTTGAGGCTTA+AGG 0.443449 1.1:+66113073 None:intergenic
AAAAGAAACACTGTTATTGT+AGG 0.444630 1.1:-66112970 MS.gene68442:CDS
AAGTTACACAGTGGAAGATC+AGG 0.449020 1.1:-66112147 MS.gene68442:intron
TATAATTTCTGAACAAGAAA+AGG 0.450081 1.1:-66111628 MS.gene68442:CDS
GAAAAGACCAAGAGATGAGT+TGG 0.452465 1.1:-66111082 MS.gene68442:CDS
GTGAAAAGCTATATGGGAAG+AGG 0.452953 1.1:-66112775 MS.gene68442:CDS
CTTAGGCTTAAGCTGCCAAC+AGG 0.452987 1.1:+66112508 None:intergenic
CAAGATTCTCTGTGATGCCT+TGG 0.460963 1.1:-66111391 MS.gene68442:CDS
TTAGGATTGGACAAAAGATC+TGG 0.461787 1.1:+66111501 None:intergenic
GGAAGTTGAAAAGAAATTTG+TGG 0.463470 1.1:-66112812 MS.gene68442:CDS
GATGATGATGATTGCTATGA+TGG 0.465266 1.1:-66111564 MS.gene68442:CDS
TAAGGCTAAGTTCTTTGGAC+TGG 0.466737 1.1:+66113091 None:intergenic
TTGGACAAAAGATCTGGTTT+CGG 0.468033 1.1:+66111507 None:intergenic
GTTGATCACTTTACTCAAAA+GGG 0.476491 1.1:-66110979 MS.gene68442:CDS
AGCCTTGTGAAAAGCTATAT+GGG 0.482010 1.1:-66112781 MS.gene68442:CDS
GTTTGGACTTGAGTTAGGAT+TGG 0.483533 1.1:+66111488 None:intergenic
TTCTGTTGAGCATATGGTAA+TGG 0.487719 1.1:-66112671 MS.gene68442:CDS
AACATGGCTTCAAAATTGTA+AGG 0.492394 1.1:-66112177 MS.gene68442:CDS
TCCTGTTGAAGTTGCAAGCA+TGG 0.496549 1.1:+66113524 None:intergenic
CTCATAACTCTACTAACACT+TGG 0.499188 1.1:+66113219 None:intergenic
ACCTGTCAAAGTTCAAACTT+AGG 0.500140 1.1:+66112491 None:intergenic
AGCATTATCATGATCTTCAA+TGG 0.505808 1.1:+66110750 None:intergenic
TGAGATAGGTAATGTTCCTA+TGG 0.506308 1.1:-66112896 MS.gene68442:CDS
GTGGTGAGAGTGGTAGATTA+TGG 0.507287 1.1:-66112624 MS.gene68442:CDS
AGTGGAACAGATTCACCATC+AGG 0.509559 1.1:+66110919 None:intergenic
AAAAGACCAAGAGATGAGTT+GGG 0.510626 1.1:-66111081 MS.gene68442:CDS
GTGCTTCCCAACTCATCTCT+TGG 0.513956 1.1:+66111075 None:intergenic
ATATTCCTAAAACATATAAG+AGG 0.515258 1.1:+66112844 None:intergenic
TGAATGATTTCTTTATGTTG+TGG 0.516335 1.1:+66111357 None:intergenic
GAAAGCTGCAACCAAAGCAT+TGG 0.516890 1.1:+66113353 None:intergenic
TCTTGTTTGTCAAGAATGGA+AGG 0.521069 1.1:+66111744 None:intergenic
CCCAAATAGTTTCTAGGGAA+GGG 0.525348 1.1:+66112551 None:intergenic
AAGCTCCCAAATAGTTTCTA+GGG 0.525655 1.1:+66112546 None:intergenic
ACTTTGATGATCCTCTATCA+TGG 0.525748 1.1:+66110804 None:intergenic
TGAAAAGCTATATGGGAAGA+GGG 0.530391 1.1:-66112774 MS.gene68442:CDS
GTGGTAGATTATGGCTTATG+GGG 0.532642 1.1:-66112615 MS.gene68442:CDS
TTTGTGTGGAAGCTGGTAAA+CGG 0.534647 1.1:+66113418 None:intergenic
TAGCTAAAGGAGTGATGGAA+AGG 0.535032 1.1:-66112921 MS.gene68442:CDS
CATCATGCGCTGAAAACAAA+GGG 0.540396 1.1:-66110834 MS.gene68442:CDS
GAAAATGAAGTTGGTGATGA+AGG 0.541235 1.1:+66111699 None:intergenic
TCCCAAATAGTTTCTAGGGA+AGG 0.541487 1.1:+66112550 None:intergenic
AGGGAAAGAGACCATGATAG+AGG 0.549596 1.1:-66110815 MS.gene68442:CDS
AGCTTCTTCAAGTGAAGCAG+TGG 0.550112 1.1:-66111463 MS.gene68442:CDS
TCCATGAAGAACACTCTATG+AGG 0.550163 1.1:+66111015 None:intergenic
AATGCTGAGGGAGTAGCTAA+AGG 0.550237 1.1:-66112934 MS.gene68442:CDS
TCAAGAGCTTTGCATTGAAG+AGG 0.552190 1.1:+66113465 None:intergenic
GCAGTTCAAGCTTGCCAACA+TGG 0.553169 1.1:-66112193 MS.gene68442:CDS
TGTACATATCTTAACTCCAT+AGG 0.560856 1.1:+66112880 None:intergenic
TCATCATGCGCTGAAAACAA+AGG 0.563706 1.1:-66110835 MS.gene68442:CDS
ACCTAATAATGGACTTTGTG+TGG 0.564401 1.1:+66113404 None:intergenic
TGGGAAGCACTTATTTGCAA+AGG 0.564536 1.1:-66111062 MS.gene68442:CDS
TCTTCAAGTGAAGCAGTGGA+TGG 0.565452 1.1:-66111459 MS.gene68442:CDS
TGAGGAATCATCATTTCCTA+GGG 0.565890 1.1:+66111125 None:intergenic
AGAGAGTGTTTCTAATGCTG+AGG 0.567960 1.1:-66112947 MS.gene68442:CDS
GTTAGTGGAAGTGGTGAGAG+TGG 0.569181 1.1:-66112634 MS.gene68442:CDS
CAAGAGCTTTGCATTGAAGA+GGG 0.570256 1.1:+66113466 None:intergenic
GTGAATCTAGCAACAAGAAG+AGG 0.571262 1.1:-66113582 MS.gene68442:CDS
ATGAGCACTTTCTCTTCCCT+AGG 0.572261 1.1:-66111141 MS.gene68442:CDS
AATGGACTTTGTGTGGAAGC+TGG 0.579123 1.1:+66113411 None:intergenic
ATCAAGAAAGCAATTGAATG+TGG 0.579531 1.1:-66110955 MS.gene68442:CDS
GGGAGTAGCTAAAGGAGTGA+TGG 0.580375 1.1:-66112926 MS.gene68442:CDS
TGGTGAATCTGTTCCACTCA+AGG 0.581569 1.1:-66110914 MS.gene68442:CDS
TTGTGGAAACTTGTTCTCCA+AGG 0.583160 1.1:+66111374 None:intergenic
GAAGGAGTGGTTGAATATTG+AGG 0.588763 1.1:+66113381 None:intergenic
GGTTTCGGAACATTTCTATG+TGG 0.595826 1.1:+66111522 None:intergenic
GAGAGTGTTTCTAATGCTGA+GGG 0.596744 1.1:-66112946 MS.gene68442:CDS
ACCAAAGCATTGGAAAGTGA+AGG 0.598141 1.1:+66113363 None:intergenic
ATGACAATGGCATCCTTGAG+TGG 0.607162 1.1:+66110901 None:intergenic
CCACCAAGGCTAAGAACTTG+AGG 0.610990 1.1:+66113066 None:intergenic
CTTGTTTGTCAAGAATGGAA+GGG 0.613568 1.1:+66111745 None:intergenic
TTCACTACTGAAAATGACAA+TGG 0.618443 1.1:+66110888 None:intergenic
GATCATGATAATGCTGACAT+TGG 0.618644 1.1:-66110742 MS.gene68442:CDS
AGCCAGAGAGAATATCTCAA+AGG 0.623199 1.1:-66111214 MS.gene68442:CDS
GAAAAGCTATATGGGAAGAG+GGG 0.626232 1.1:-66112773 MS.gene68442:CDS
AGCATTGGAAAGTGAAGGAG+TGG 0.626564 1.1:+66113368 None:intergenic
TTATTATACACTGAAAGTGC+TGG 0.631798 1.1:-66111588 MS.gene68442:CDS
AAAATCATAAGCAAGAAACA+TGG 0.634641 1.1:-66111263 MS.gene68442:CDS
ATGGCACTAGCAACATGAAG+AGG 0.635949 1.1:+66113543 None:intergenic
CTATATTCAGATCCAAAGAG+AGG 0.642276 1.1:+66110773 None:intergenic
GGAAGTATAACAATTCCTGA+TGG 0.693696 1.1:-66110934 MS.gene68442:CDS
GGAAGAAAGAAGTTACACAG+TGG 0.706086 1.1:-66112156 MS.gene68442:CDS
GCTCAGGCTCACCAAAGACG+CGG 0.718198 1.1:-66113324 MS.gene68442:CDS
GTTTGGTGTATGAACCACCA+AGG 0.726709 1.1:+66113052 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATAACAAAATTACTTTAA+TGG - chr1.1:66112327-66112346 MS.gene68442:CDS 10.0%
!! AAAGATAAGAAAATAGAAAA+AGG + chr1.1:66112504-66112523 None:intergenic 15.0%
!! TAAATAATGTAAAACATAAG+AGG + chr1.1:66111979-66111998 None:intergenic 15.0%
!! AACTATATATATGCAAAAAC+AGG - chr1.1:66112474-66112493 MS.gene68442:intron 20.0%
!! ATATTCCTAAAACATATAAG+AGG + chr1.1:66111512-66111531 None:intergenic 20.0%
!! TATAATTTCTGAACAAGAAA+AGG - chr1.1:66112725-66112744 MS.gene68442:CDS 20.0%
!! TTTATTTAGGTGATTTGAAA+TGG - chr1.1:66111609-66111628 MS.gene68442:CDS 20.0%
!!! TTTTAGGAATATTAGTAAAG+AGG - chr1.1:66111520-66111539 MS.gene68442:CDS 20.0%
!!! TTTTCTTGTTCAGAAATTAT+AGG + chr1.1:66112726-66112745 None:intergenic 20.0%
!!! TTTTTCTTTCTATGTGAAAT+AGG - chr1.1:66112521-66112540 MS.gene68442:CDS 20.0%
! AAAAGAAACACTGTTATTGT+AGG - chr1.1:66111383-66111402 MS.gene68442:CDS 25.0%
! AAAATCATAAGCAAGAAACA+TGG - chr1.1:66113090-66113109 MS.gene68442:CDS 25.0%
! AAATTATAGGCCAATTTAGT+TGG + chr1.1:66112713-66112732 None:intergenic 25.0%
! GAGATTAAAAAATTGGTTAG+TGG - chr1.1:66111704-66111723 MS.gene68442:CDS 25.0%
! TCATTGTTAACACAATCTAT+AGG + chr1.1:66111326-66111345 None:intergenic 25.0%
! TGAATGATTTCTTTATGTTG+TGG + chr1.1:66112999-66113018 None:intergenic 25.0%
! TGTAACAACTTTATGACAAT+TGG - chr1.1:66113188-66113207 MS.gene68442:CDS 25.0%
! TGTTGAGTGAATTAGTAAAA+AGG - chr1.1:66111360-66111379 MS.gene68442:CDS 25.0%
! TTTGTTGAAGAAACTTCAAT+TGG + chr1.1:66111218-66111237 None:intergenic 25.0%
!! TATAATAACTCACACTCTTT+TGG + chr1.1:66112753-66112772 None:intergenic 25.0%
!! TTCAGTGTGAAATTTTTGTA+CGG - chr1.1:66112426-66112445 MS.gene68442:intron 25.0%
!!! GGTAATGGAGATTAAAAAAT+TGG - chr1.1:66111697-66111716 MS.gene68442:CDS 25.0%
!!! TTATAGTGATTTTCAAGCTA+AGG - chr1.1:66111996-66112015 MS.gene68442:intron 25.0%
!!! TTGACTTTTCAAGATAAAGT+AGG - chr1.1:66112045-66112064 MS.gene68442:intron 25.0%
AAAAAATTGGTTAGTGGAAG+TGG - chr1.1:66111710-66111729 MS.gene68442:CDS 30.0%
AACATGGCTTCAAAATTGTA+AGG - chr1.1:66112176-66112195 MS.gene68442:CDS 30.0%
AAGTAATCTAAACCTCTCTT+TGG - chr1.1:66113568-66113587 MS.gene68442:CDS 30.0%
AATAGTCTCATACACTTACT+TGG - chr1.1:66112239-66112258 MS.gene68442:CDS 30.0%
AGCATTATCATGATCTTCAA+TGG + chr1.1:66113606-66113625 None:intergenic 30.0%
AGTTGATCACTTTACTCAAA+AGG - chr1.1:66113373-66113392 MS.gene68442:CDS 30.0%
ATAGGAAAATGCAAGACTTA+AGG - chr1.1:66112539-66112558 MS.gene68442:CDS 30.0%
ATCAAGAAAGCAATTGAATG+TGG - chr1.1:66113398-66113417 MS.gene68442:CDS 30.0%
CAAGTGATGAAAAATCCAAA+AGG - chr1.1:66113249-66113268 MS.gene68442:CDS 30.0%
CAAGTTACTGTGAACAAAAA+AGG - chr1.1:66111648-66111667 MS.gene68442:CDS 30.0%
GAATATTGAGGACCTAATAA+TGG + chr1.1:66110963-66110982 None:intergenic 30.0%
GGAAGTTGAAAAGAAATTTG+TGG - chr1.1:66111541-66111560 MS.gene68442:CDS 30.0%
GTTAACACAATCTATAGGTT+TGG + chr1.1:66111321-66111340 None:intergenic 30.0%
GTTGATCACTTTACTCAAAA+GGG - chr1.1:66113374-66113393 MS.gene68442:CDS 30.0%
TCATTCCTGATCTACAAAAA+AGG + chr1.1:66113040-66113059 None:intergenic 30.0%
TGTACATATCTTAACTCCAT+AGG + chr1.1:66111476-66111495 None:intergenic 30.0%
TTCACTACTGAAAATGACAA+TGG + chr1.1:66113468-66113487 None:intergenic 30.0%
TTTCAAGATAAAGTAGGAGT+TGG - chr1.1:66112051-66112070 MS.gene68442:intron 30.0%
! AGAGGGGTTATTCTTTATTT+AGG - chr1.1:66111596-66111615 MS.gene68442:CDS 30.0%
! CAAATCTTGTTTGTCAAGAA+TGG + chr1.1:66112616-66112635 None:intergenic 30.0%
! GTCTTCCTCTTATATGTTTT+AGG - chr1.1:66111504-66111523 MS.gene68442:CDS 30.0%
! TTATTATACACTGAAAGTGC+TGG - chr1.1:66112765-66112784 MS.gene68442:CDS 30.0%
! TTTGGATTTTTCATCACTTG+AGG + chr1.1:66113249-66113268 None:intergenic 30.0%
!! GAACTAGCTAAAGTTGTTTT+TGG - chr1.1:66113161-66113180 MS.gene68442:CDS 30.0%
!! TGAAATGGTTGTTTGAGTTT+TGG - chr1.1:66111624-66111643 MS.gene68442:CDS 30.0%
!!! GAAACATGGATGTTTTTTCT+TGG - chr1.1:66113104-66113123 MS.gene68442:CDS 30.0%
!!! GTTAGACTTTTTTTCAAGTG+AGG + chr1.1:66112679-66112698 None:intergenic 30.0%
!!! TTACAATTTTGAAGCCATGT+TGG + chr1.1:66112177-66112196 None:intergenic 30.0%
AAAAGACCAAGAGATGAGTT+GGG - chr1.1:66113272-66113291 MS.gene68442:CDS 35.0%
AAGCTCCCAAATAGTTTCTA+GGG + chr1.1:66111810-66111829 None:intergenic 35.0%
ACCTGTCAAAGTTCAAACTT+AGG + chr1.1:66111865-66111884 None:intergenic 35.0%
AGATCAGGAATGAGAAAAAG+AGG - chr1.1:66113047-66113066 MS.gene68442:CDS 35.0%
AGCACTTATTTGCAAAGGTT+TGG - chr1.1:66113296-66113315 MS.gene68442:CDS 35.0%
AGTGGTAGATTATGGCTTAT+GGG - chr1.1:66111737-66111756 MS.gene68442:CDS 35.0%
CTATATTCAGATCCAAAGAG+AGG + chr1.1:66113583-66113602 None:intergenic 35.0%
CTATTGTTCTGTTGAGCATA+TGG - chr1.1:66111676-66111695 MS.gene68442:CDS 35.0%
CTCATAACTCTACTAACACT+TGG + chr1.1:66111137-66111156 None:intergenic 35.0%
CTTGTTTGTCAAGAATGGAA+GGG + chr1.1:66112611-66112630 None:intergenic 35.0%
GATCAGGAATGAGAAAAAGA+GGG - chr1.1:66113048-66113067 MS.gene68442:CDS 35.0%
TCAAGTGAGGAAAATGAAGT+TGG + chr1.1:66112666-66112685 None:intergenic 35.0%
TCCAACAAAGCCAACTAAAT+TGG - chr1.1:66112700-66112719 MS.gene68442:CDS 35.0%
TCCACACAAAGTCCATTATT+AGG - chr1.1:66110948-66110967 MS.gene68442:CDS 35.0%
TGAAAAGCTATATGGGAAGA+GGG - chr1.1:66111579-66111598 MS.gene68442:CDS 35.0%
TGAGATAGGTAATGTTCCTA+TGG - chr1.1:66111457-66111476 MS.gene68442:CDS 35.0%
TGAGGAATCATCATTTCCTA+GGG + chr1.1:66113231-66113250 None:intergenic 35.0%
TTAAGGATCTCTGCAAGAAA+TGG - chr1.1:66112556-66112575 MS.gene68442:CDS 35.0%
TTAGGATTGGACAAAAGATC+TGG + chr1.1:66112855-66112874 None:intergenic 35.0%
TTCTGTTGAGCATATGGTAA+TGG - chr1.1:66111682-66111701 MS.gene68442:CDS 35.0%
TTGAGGAATCATCATTTCCT+AGG + chr1.1:66113232-66113251 None:intergenic 35.0%
! AAGCCTTGTGAAAAGCTATA+TGG - chr1.1:66111571-66111590 MS.gene68442:CDS 35.0%
! ACTTTGATGATCCTCTATCA+TGG + chr1.1:66113552-66113571 None:intergenic 35.0%
! AGCCTTGTGAAAAGCTATAT+GGG - chr1.1:66111572-66111591 MS.gene68442:CDS 35.0%
! CATCCTTTTACAATTCCTGT+TGG - chr1.1:66111830-66111849 MS.gene68442:intron 35.0%
! GATCATGATAATGCTGACAT+TGG - chr1.1:66113611-66113630 MS.gene68442:CDS 35.0%
! GATGATGATGATTGCTATGA+TGG - chr1.1:66112789-66112808 MS.gene68442:CDS 35.0%
! GGAAGTATAACAATTCCTGA+TGG - chr1.1:66113419-66113438 MS.gene68442:CDS 35.0%
! TCTTGTTTGTCAAGAATGGA+AGG + chr1.1:66112612-66112631 None:intergenic 35.0%
! TTCCCATATAGCTTTTCACA+AGG + chr1.1:66111577-66111596 None:intergenic 35.0%
! TTGGACAAAAGATCTGGTTT+CGG + chr1.1:66112849-66112868 None:intergenic 35.0%
!! ACCTAATAATGGACTTTGTG+TGG + chr1.1:66110952-66110971 None:intergenic 35.0%
!! ATCTCTTGGTCTTTTCCTTT+TGG + chr1.1:66113267-66113286 None:intergenic 35.0%
!! GAAAATGAAGTTGGTGATGA+AGG + chr1.1:66112657-66112676 None:intergenic 35.0%
!! TTCCTTTGAGATATTCTCTC+TGG + chr1.1:66113144-66113163 None:intergenic 35.0%
!!! ACTGTCCTTTTTTGTAGATC+AGG - chr1.1:66113032-66113051 MS.gene68442:CDS 35.0%
AAGTTACACAGTGGAAGATC+AGG - chr1.1:66112206-66112225 MS.gene68442:CDS 40.0%
ACCCTTCCCTAGAAACTATT+TGG - chr1.1:66111801-66111820 MS.gene68442:CDS 40.0%
AGCCAGAGAGAATATCTCAA+AGG - chr1.1:66113139-66113158 MS.gene68442:CDS 40.0%
AGGCTTAAGGCTAAGTTCTT+TGG + chr1.1:66111270-66111289 None:intergenic 40.0%
AGTAGAGTTATGAGAGAAGC+TGG - chr1.1:66111143-66111162 MS.gene68442:CDS 40.0%
AGTCGTAAGTTCGTAACTGT+TGG + chr1.1:66112404-66112423 None:intergenic 40.0%
CAAGAGCTTTGCATTGAAGA+GGG + chr1.1:66110890-66110909 None:intergenic 40.0%
CATCATGCGCTGAAAACAAA+GGG - chr1.1:66113519-66113538 MS.gene68442:CDS 40.0%
CCCTTCCCTAGAAACTATTT+GGG - chr1.1:66111802-66111821 MS.gene68442:CDS 40.0%
CTGCCAACAGGAATTGTAAA+AGG + chr1.1:66111836-66111855 None:intergenic 40.0%
GAAAAGACCAAGAGATGAGT+TGG - chr1.1:66113271-66113290 MS.gene68442:CDS 40.0%
GAAAAGCTATATGGGAAGAG+GGG - chr1.1:66111580-66111599 MS.gene68442:CDS 40.0%
GAAGCTCCCAAATAGTTTCT+AGG + chr1.1:66111811-66111830 None:intergenic 40.0%
GAAGGAGTGGTTGAATATTG+AGG + chr1.1:66110975-66110994 None:intergenic 40.0%
GAGTGGTAGATTATGGCTTA+TGG - chr1.1:66111736-66111755 MS.gene68442:CDS 40.0%
GCCTAAGTTTGAACTTTGAC+AGG - chr1.1:66111861-66111880 MS.gene68442:intron 40.0%
GGAAGAAAGAAGTTACACAG+TGG - chr1.1:66112197-66112216 MS.gene68442:CDS 40.0%
GGTTTCGGAACATTTCTATG+TGG + chr1.1:66112834-66112853 None:intergenic 40.0%
GTGAAAAGCTATATGGGAAG+AGG - chr1.1:66111578-66111597 MS.gene68442:CDS 40.0%
GTGAATCTAGCAACAAGAAG+AGG - chr1.1:66110771-66110790 MS.gene68442:CDS 40.0%
GTGGTAGATTATGGCTTATG+GGG - chr1.1:66111738-66111757 MS.gene68442:CDS 40.0%
GTTTGGACTTGAGTTAGGAT+TGG + chr1.1:66112868-66112887 None:intergenic 40.0%
TAAGGCTAAGTTCTTTGGAC+TGG + chr1.1:66111265-66111284 None:intergenic 40.0%
TCAAGAGCTTTGCATTGAAG+AGG + chr1.1:66110891-66110910 None:intergenic 40.0%
TCAAGCTAAGGAGAGAAGTA+TGG - chr1.1:66112008-66112027 MS.gene68442:intron 40.0%
TCACTTGAAGAAGCTGAGTT+TGG + chr1.1:66112885-66112904 None:intergenic 40.0%
TCATCATGCGCTGAAAACAA+AGG - chr1.1:66113518-66113537 MS.gene68442:CDS 40.0%
TCCATGAAGAACACTCTATG+AGG + chr1.1:66113341-66113360 None:intergenic 40.0%
TCCTTCACTTTCCAATGCTT+TGG - chr1.1:66110989-66111008 MS.gene68442:CDS 40.0%
TTTGTGTGGAAGCTGGTAAA+CGG + chr1.1:66110938-66110957 None:intergenic 40.0%
! CCCAAATAGTTTCTAGGGAA+GGG + chr1.1:66111805-66111824 None:intergenic 40.0%
! GTGATGGAAAGGTTTGAGAT+AGG - chr1.1:66111443-66111462 MS.gene68442:CDS 40.0%
! TAGCTAAAGGAGTGATGGAA+AGG - chr1.1:66111432-66111451 MS.gene68442:CDS 40.0%
! TCCCAAATAGTTTCTAGGGA+AGG + chr1.1:66111806-66111825 None:intergenic 40.0%
! TCCTCATAGAGTGTTCTTCA+TGG - chr1.1:66113337-66113356 MS.gene68442:CDS 40.0%
! TTGTGGAAACTTGTTCTCCA+AGG + chr1.1:66112982-66113001 None:intergenic 40.0%
! TTTTCAGCGCATGATGATTG+TGG + chr1.1:66113515-66113534 None:intergenic 40.0%
!! ACCAAAGCATTGGAAAGTGA+AGG + chr1.1:66110993-66111012 None:intergenic 40.0%
!! AGAGAGTGTTTCTAATGCTG+AGG - chr1.1:66111406-66111425 MS.gene68442:CDS 40.0%
!! GAGAGTGTTTCTAATGCTGA+GGG - chr1.1:66111407-66111426 MS.gene68442:CDS 40.0%
!! GCCAATTTAGTTGGCTTTGT+TGG + chr1.1:66112704-66112723 None:intergenic 40.0%
!! TGGGAAGCACTTATTTGCAA+AGG - chr1.1:66113291-66113310 MS.gene68442:CDS 40.0%
AAGCCTCAAGTTCTTAGCCT+TGG - chr1.1:66111284-66111303 MS.gene68442:CDS 45.0%
AATGCTGAGGGAGTAGCTAA+AGG - chr1.1:66111419-66111438 MS.gene68442:CDS 45.0%
AGCTTCTTCAAGTGAAGCAG+TGG - chr1.1:66112890-66112909 MS.gene68442:CDS 45.0%
AGGGAAAGAGACCATGATAG+AGG - chr1.1:66113538-66113557 MS.gene68442:CDS 45.0%
AGTGGAACAGATTCACCATC+AGG + chr1.1:66113437-66113456 None:intergenic 45.0%
ATGACAATGGCATCCTTGAG+TGG + chr1.1:66113455-66113474 None:intergenic 45.0%
ATGAGCACTTTCTCTTCCCT+AGG - chr1.1:66113212-66113231 MS.gene68442:CDS 45.0%
ATGGCACTAGCAACATGAAG+AGG + chr1.1:66110813-66110832 None:intergenic 45.0%
CAAGATTCTCTGTGATGCCT+TGG - chr1.1:66112962-66112981 MS.gene68442:CDS 45.0%
GAAAGCTGCAACCAAAGCAT+TGG + chr1.1:66111003-66111022 None:intergenic 45.0%
GCTGAGTTTGGACTTGAGTT+AGG + chr1.1:66112873-66112892 None:intergenic 45.0%
GGCTAAGAACTTGAGGCTTA+AGG + chr1.1:66111283-66111302 None:intergenic 45.0%
GTGGTGAGAGTGGTAGATTA+TGG - chr1.1:66111729-66111748 MS.gene68442:CDS 45.0%
TCCTGTTGAAGTTGCAAGCA+TGG + chr1.1:66110832-66110851 None:intergenic 45.0%
TCTTCAAGTGAAGCAGTGGA+TGG - chr1.1:66112894-66112913 MS.gene68442:CDS 45.0%
TGGTGAATCTGTTCCACTCA+AGG - chr1.1:66113439-66113458 MS.gene68442:CDS 45.0%
! AATGGACTTTGTGTGGAAGC+TGG + chr1.1:66110945-66110964 None:intergenic 45.0%
! AGCATTGGAAAGTGAAGGAG+TGG + chr1.1:66110988-66111007 None:intergenic 45.0%
! GTCGACAGCGTAAAGCATTT+AGG + chr1.1:66112307-66112326 None:intergenic 45.0%
!! GTTTGGTGTATGAACCACCA+AGG + chr1.1:66111304-66111323 None:intergenic 45.0%
CCACCAAGGCTAAGAACTTG+AGG + chr1.1:66111290-66111309 None:intergenic 50.0%
CTTAGGCTTAAGCTGCCAAC+AGG + chr1.1:66111848-66111867 None:intergenic 50.0%
GCAGTTCAAGCTTGCCAACA+TGG - chr1.1:66112160-66112179 MS.gene68442:CDS 50.0%
GCCATGCTTGCAACTTCAAC+AGG - chr1.1:66110828-66110847 MS.gene68442:CDS 50.0%
GGGAGTAGCTAAAGGAGTGA+TGG - chr1.1:66111427-66111446 MS.gene68442:CDS 50.0%
GTGCTTCCCAACTCATCTCT+TGG + chr1.1:66113281-66113300 None:intergenic 50.0%
GTTAGTGGAAGTGGTGAGAG+TGG - chr1.1:66111719-66111738 MS.gene68442:CDS 50.0%
TGCAGCTTTCAAACGTGCTC+AGG - chr1.1:66111013-66111032 MS.gene68442:CDS 50.0%
!! CCTCAAGTTCTTAGCCTTGG+TGG - chr1.1:66111287-66111306 MS.gene68442:CDS 50.0%
TCTCGATCGTTCCGCGTCTT+TGG + chr1.1:66111043-66111062 None:intergenic 55.0%
GCTCAGGCTCACCAAAGACG+CGG - chr1.1:66111029-66111048 MS.gene68442:CDS 60.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 66110699 66113676 66110699 ID=MS.gene68442
chr1.1 mRNA 66110699 66113676 66110699 ID=MS.gene68442.t1;Parent=MS.gene68442
chr1.1 exon 66112493 66113676 66112493 ID=MS.gene68442.t1.exon1;Parent=MS.gene68442.t1
chr1.1 CDS 66112493 66113676 66112493 ID=cds.MS.gene68442.t1;Parent=MS.gene68442.t1
chr1.1 exon 66112148 66112373 66112148 ID=MS.gene68442.t1.exon2;Parent=MS.gene68442.t1
chr1.1 CDS 66112148 66112373 66112148 ID=cds.MS.gene68442.t1;Parent=MS.gene68442.t1
chr1.1 exon 66110699 66111832 66110699 ID=MS.gene68442.t1.exon3;Parent=MS.gene68442.t1
chr1.1 CDS 66110699 66111832 66110699 ID=cds.MS.gene68442.t1;Parent=MS.gene68442.t1
Gene Sequence

>MS.gene68442

ATGAGAGGAGGAATTTGCAGTATACAGCTTCAAGCACTTACACAAGAAGCTGCAACTGTTGTTAAACAAGCAGTGAATCTAGCAACAAGAAGAGGTCATGCACAAGTTACACCTCTTCATGTTGCTAGTGCCATGCTTGCAACTTCAACAGGACTGTTAAGAAAAGCTTGTCTTCAATGTCACTCTCACCCTCTTCAATGCAAAGCTCTTGAGCTTTGTTTCAATGTTGCACTCAACCGTTTACCAGCTTCCACACAAAGTCCATTATTAGGTCCTCAATATTCAACCACTCCTTCACTTTCCAATGCTTTGGTTGCAGCTTTCAAACGTGCTCAGGCTCACCAAAGACGCGGAACGATCGAGAATCAGCAACAGCAGCATATTCTTGCTTTGAAAATTGAAGTTGAACAGCTCATAATCTCTATACTTGATGATCCAAGTGTTAGTAGAGTTATGAGAGAAGCTGGTTTCTCTAGCACTCTTGTGAAATCAAGAGTTGAAGTTGAACAATCTCTTCCAATTGAAGTTTCTTCAACAAAAGTTTCTTCTGAATATAATAAAAACCAGTCCAAAGAACTTAGCCTTAAGCCTCAAGTTCTTAGCCTTGGTGGTTCATACACCAAACCTATAGATTGTGTTAACAATGATGATGTAACAAGTGTGTTGAGTGAATTAGTAAAAAGGAAAAGAAACACTGTTATTGTAGGAGAGAGTGTTTCTAATGCTGAGGGAGTAGCTAAAGGAGTGATGGAAAGGTTTGAGATAGGTAATGTTCCTATGGAGTTAAGATATGTACAATTTGTGAGTCTTCCTCTTATATGTTTTAGGAATATTAGTAAAGAGGAAGTTGAAAAGAAATTTGTGGAAGTTAGAAGCCTTGTGAAAAGCTATATGGGAAGAGGGGTTATTCTTTATTTAGGTGATTTGAAATGGTTGTTTGAGTTTTGGTCAAGTTACTGTGAACAAAAAAGGAACTACTATTGTTCTGTTGAGCATATGGTAATGGAGATTAAAAAATTGGTTAGTGGAAGTGGTGAGAGTGGTAGATTATGGCTTATGGGGATTGCAAATTTTAAAACATACATGAAGTGTAAAATATCTCACCCTTCCCTAGAAACTATTTGGGAGCTTCATCCTTTTACAATTCCTGTTGGCAGCTTAAGCCTAAGTTTGAACTTTGACAGGTAAATTTAAGATTTTTGTTTTCTTTTGAAACTCTTGTTCTTACTTCTATTATTGAGTTTTTTTTTTTTTTTTTTTTTTTTTTGTAATTAACACCTCTTATGTTTTACATTATTTATAGTGATTTTCAAGCTAAGGAGAGAAGTATGGTATTATTCAATGACTTGACTTTTCAAGATAAAGTAGGAGTTGGAAAGCAACTAACTTGCTGCAGAGATTGTTCAATAAAATTTGAAAATGAAGCTCTGAGTTTGAGTAACAATATAAGCAAGAAAGCATGCAGTTCAAGCTTGCCAACATGGCTTCAAAATTGTAAGGAAGAAAGAAGTTACACAGTGGAAGATCAGGTTTGTTTCATAATAGTCTCATACACTTACTTGGTTCAGAAAAATTCATTCGAGTTTCATTTTGATACACTGTCAGCCTAAATGCTTTACGCTGTCGACAAATAACAAAATTACTTTAATGGTGTTTATGATAAAATTTTATGATAAAAGTTAAATATCTTTTATGATTTACTCCAACAGTTACGAACTTACGACTGATTCAGTGTGAAATTTTTGTACGGTGACAGTGTATATGCATTAGTCTTTAACTATATATATGCAAAAACAGGTTGTCCTTTTTCTATTTTCTTATCTTTTTCTTTCTATGTGAAATAGGAAAATGCAAGACTTAAGGATCTCTGCAAGAAATGGAACTCAATATGCAATTCAATACACAGACACCCTTCCATTCTTGACAAACAAGATTTGTTTGTTTTATCGTCATCACCTTCATCACCAACTTCATTTTCCTCACTTGAAAAAAAGTCTAACTTCCAACAAAGCCAACTAAATTGGCCTATAATTTCTGAACAAGAAAAGGTACCAAAAGAGTGTGAGTTATTATACACTGAAAGTGCTGGTGATGATGATGATTGCTATGATGGTAACTTGATCATGTTCATGCCACATAGAAATGTTCCGAAACCAGATCTTTTGTCCAATCCTAACTCAAGTCCAAACTCAGCTTCTTCAAGTGAAGCAGTGGATGGTTTAGAAAGTACTGAAATGTTCAACGAACATAATGAAGAGAATCTCAAGATTCTCTGTGATGCCTTGGAGAACAAGTTTCCACAACATAAAGAAATCATTCAAGAGATTGCAAGTACTGTCCTTTTTTGTAGATCAGGAATGAGAAAAAGAGGGAACAACTTCTTCAAAAGAGAAAATCATAAGCAAGAAACATGGATGTTTTTTCTTGGTGATGATTCTCAAGCCAGAGAGAATATCTCAAAGGAACTAGCTAAAGTTGTTTTTGGATCTTGTAACAACTTTATGACAATTGGCATGAGCACTTTCTCTTCCCTAGGAAATGATGATTCCTCAAGTGATGAAAAATCCAAAAGGAAAAGACCAAGAGATGAGTTGGGAAGCACTTATTTGCAAAGGTTTGGTGAAGCAGTGAATGAGAATCCTCATAGAGTGTTCTTCATGGAAGATTTTGAACAAGTTGATCACTTTACTCAAAAGGGTATCAAGAAAGCAATTGAATGTGGAAGTATAACAATTCCTGATGGTGAATCTGTTCCACTCAAGGATGCCATTGTCATTTTCAGTAGTGAAAGCTTCAGTTCAGTGTCAAAGTCACCACAATCATCATGCGCTGAAAACAAAGGGAAAGAGACCATGATAGAGGATCATCAAAGTAATCTAAACCTCTCTTTGGATCTGAATATAGCCATTGAAGATCATGATAATGCTGACATTGGTATTCTTGAGTTAGTTGACAAGAAAATTAGTTTTAATTTGTAA

Protein sequence

>MS.gene68442.t1

MRGGICSIQLQALTQEAATVVKQAVNLATRRGHAQVTPLHVASAMLATSTGLLRKACLQCHSHPLQCKALELCFNVALNRLPASTQSPLLGPQYSTTPSLSNALVAAFKRAQAHQRRGTIENQQQQHILALKIEVEQLIISILDDPSVSRVMREAGFSSTLVKSRVEVEQSLPIEVSSTKVSSEYNKNQSKELSLKPQVLSLGGSYTKPIDCVNNDDVTSVLSELVKRKRNTVIVGESVSNAEGVAKGVMERFEIGNVPMELRYVQFVSLPLICFRNISKEEVEKKFVEVRSLVKSYMGRGVILYLGDLKWLFEFWSSYCEQKRNYYCSVEHMVMEIKKLVSGSGESGRLWLMGIANFKTYMKCKISHPSLETIWELHPFTIPVGSLSLSLNFDSDFQAKERSMVLFNDLTFQDKVGVGKQLTCCRDCSIKFENEALSLSNNISKKACSSSLPTWLQNCKEERSYTVEDQENARLKDLCKKWNSICNSIHRHPSILDKQDLFVLSSSPSSPTSFSSLEKKSNFQQSQLNWPIISEQEKVPKECELLYTESAGDDDDCYDGNLIMFMPHRNVPKPDLLSNPNSSPNSASSSEAVDGLESTEMFNEHNEENLKILCDALENKFPQHKEIIQEIASTVLFCRSGMRKRGNNFFKRENHKQETWMFFLGDDSQARENISKELAKVVFGSCNNFMTIGMSTFSSLGNDDSSSDEKSKRKRPRDELGSTYLQRFGEAVNENPHRVFFMEDFEQVDHFTQKGIKKAIECGSITIPDGESVPLKDAIVIFSSESFSSVSKSPQSSCAENKGKETMIEDHQSNLNLSLDLNIAIEDHDNADIGILELVDKKISFNL