AlfalfaGEDB | MS.gene69116

M. sativa cultivar XinJiangDaYe / MS.gene69116

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005515
PFAM: PF01535.23 PF12854.10 PF13041.9 PF20431.1

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene69116.t1	RHN70971.1	91.3	517	45	0	1	517	44	560	4.20E-232	813.9

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene69116.t1	Q9FJY7	47.1	482	246	3	2	479	28	504	2.1e-78	294.7

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene69116.t1	A0A396J274	91.3	517	45	0	1	517	44	560	3.0e-232	813.9

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049254	MS.gene69116	0.808555	2.92E-50	-1.69E-46
MS.gene049825	MS.gene69116	0.813514	2.46E-51	-1.69E-46
MS.gene050559	MS.gene69116	0.800324	1.52E-48	-1.69E-46
MS.gene051279	MS.gene69116	0.815092	1.10E-51	-1.69E-46
MS.gene051574	MS.gene69116	0.80043	1.45E-48	-1.69E-46
MS.gene051744	MS.gene69116	0.803908	2.78E-49	-1.69E-46
MS.gene052519	MS.gene69116	0.807861	4.11E-50	-1.69E-46
MS.gene052582	MS.gene69116	0.842823	2.04E-58	-1.69E-46
MS.gene052584	MS.gene69116	0.835056	2.10E-56	-1.69E-46
MS.gene053226	MS.gene69116	0.811054	8.48E-51	-1.69E-46

Showing 1 to 10 of 18 entries

Previous1 2Next

PPI:

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene69116.t1	MTR_8g087980	92.338	509	39	0	1	509	1	509	0.0	980
MS.gene69116.t1	MTR_3g111500	91.556	450	38	0	1	450	21	470	0.0	861
MS.gene69116.t1	MTR_5g020650	38.289	491	295	2	3	490	26	511	2.37e-124	374
MS.gene69116.t1	MTR_3g109380	38.523	501	295	4	1	495	23	516	1.29e-123	372
MS.gene69116.t1	MTR_7g032360	38.320	488	286	6	1	474	32	518	4.86e-111	340
MS.gene69116.t1	MTR_6g059820	36.056	502	310	6	1	494	19	517	6.91e-110	337
MS.gene69116.t1	MTR_5g043780	36.275	510	309	6	1	499	18	522	8.46e-109	334
MS.gene69116.t1	MTR_4g095065	35.628	494	304	6	6	494	42	526	1.39e-108	337
MS.gene69116.t1	MTR_8g027150	34.879	496	306	5	1	492	1	483	7.93e-108	331
MS.gene69116.t1	MTR_5g091640	36.566	495	300	6	6	492	46	534	2.01e-107	331

Showing 1 to 10 of 928 entries

Previous1 2 3 4 5…93Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene69116.t1	AT5G66520	38.797	482	286	3	2	479	28	504	6.90e-121	368
MS.gene69116.t1	AT4G37380	35.542	498	310	5	6	499	47	537	3.92e-114	351
MS.gene69116.t1	AT5G48910	36.973	522	300	8	1	499	36	551	9.92e-114	350
MS.gene69116.t1	AT2G42920	37.376	503	304	4	1	498	38	534	1.89e-112	345
MS.gene69116.t1	AT2G42920	37.376	503	304	4	1	498	38	534	1.89e-112	345
MS.gene69116.t1	AT5G06540	36.364	484	294	5	5	479	29	507	1.01e-110	342
MS.gene69116.t1	AT5G06540	24.069	349	203	9	89	406	13	330	1.38e-16	83.2
MS.gene69116.t1	AT2G20540	36.585	492	301	4	5	492	27	511	1.68e-110	338
MS.gene69116.t1	AT3G62890	38.242	455	273	4	54	500	25	479	7.25e-104	323
MS.gene69116.t1	AT3G62890	23.164	354	199	12	5	319	82	401	3.82e-20	94.4

Showing 1 to 10 of 1,075 entries

Previous1 2 3 4 5…108Next

Find 103 sgRNAs with CRISPR-Local

Find 130 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGTAACCTCATTAGGCTT+TGG	0.419121	3.4:+96385430	None:intergenic
AACCAGATGGAGCCATATGG+GGG	0.646132	3.4:-96385222	MS.gene69116:CDS
AAGAAAACTGATGAAAGATA+GGG	0.460898	3.4:-96385044	MS.gene69116:CDS
ACCTTCCCAATTACCCATAT+TGG	0.295382	3.4:+96385078	None:intergenic
ACGAGTGAGGTTGTTGGTGA+TGG	0.568250	3.4:+96386353	None:intergenic
ACGCCATCTATTGAACACTA+TGG	0.420129	3.4:-96385319	MS.gene69116:CDS
ACGGATTGGTTAATGAAGCG+AGG	0.608392	3.4:-96385894	MS.gene69116:CDS
ACGTACCTACCGCTATGTTC+AGG	0.509273	3.4:+96385121	None:intergenic
ACTGATGAAAGATAGGGGAG+TGG	0.573555	3.4:-96385038	MS.gene69116:CDS
ACTGGAACTGTTTGAGAAGA+TGG	0.521961	3.4:-96385464	MS.gene69116:CDS

Showing 1 to 10 of 103 entries

Previous1 2 3 4 5…11Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AGAAAACTGATGAAAGATAG+GGG	-	chr3.4:96386194-96386213	MS.gene69116:CDS	30.0%
ATCAGCAAAAAACTTGTGTA+TGG	+	chr3.4:96386264-96386283	None:intergenic	30.0%
ATGCATGGTCATTATGAATT+GGG	-	chr3.4:96386059-96386078	MS.gene69116:CDS	30.0%
ATGGATTCATTCTTATGTTG+AGG	-	chr3.4:96385578-96385597	MS.gene69116:CDS	30.0%
CATTCTTATGTTGAGGAAAA+TGG	-	chr3.4:96385585-96385604	MS.gene69116:CDS	30.0%
TTATGTTGAGGAAAATGGTT+TGG	-	chr3.4:96385590-96385609	MS.gene69116:CDS	30.0%
TTCACTCTATCAATGAAGTT+GGG	-	chr3.4:96385174-96385193	MS.gene69116:CDS	30.0%
AAAGTAACCTCATTAGGCTT+TGG	+	chr3.4:96385810-96385829	None:intergenic	35.0%
ATTTCTCAACTTTCTTTCCC+AGG	+	chr3.4:96386334-96386353	None:intergenic	35.0%
CAAGTAGCAACATCTTTAAC+AGG	+	chr3.4:96385705-96385724	None:intergenic	35.0%

Showing 1 to 10 of 130 entries

Previous1 2 3 4 5…13Next

Chromosome	Type	Strat	End	Strand	Name
chr3.4	gene	96384853	96386406	96384853	ID=MS.gene69116
chr3.4	mRNA	96384853	96386406	96384853	ID=MS.gene69116.t1;Parent=MS.gene69116
chr3.4	exon	96384853	96386406	96384853	ID=MS.gene69116.t1.exon1;Parent=MS.gene69116.t1
chr3.4	CDS	96384853	96386406	96384853	ID=cds.MS.gene69116.t1;Parent=MS.gene69116.t1

Gene Sequence

>MS.gene69116

ATGAAACAAACAAAACAAATCCACGCTCACGCCATCACCAACAACCTCACTCGTTTCTCCTACATCTCCAGTAGAATCCTAGCATTCTTCGCTCTCTCACCGCAAGGCGATTTTCGCTATGCAGAAACTCTCTTCACACACATGCCCAATCCAAATATCTTTGATTACAACTCTATAATCACTTCTTACACAATAAATTCACAGTTCGATAAATCACTCTCCGTTTTCACCAAAATGCTTAAAACGAACATTCGCCCTAATTCTCACACCTTCACCACTCTTGTAAAAGCATGCACTACTCTTTCCTCTCTTGAACAAATCTTCACTCTATCAATGAAGTTGGGGAATTCATCTGATGTGTATTTTGTGAGCTCTGTTATCAATGCGTTTTCAAAACACGGTGCAGTACACCTTGCACTTCAAGTGTTTGACGAAAGTTCTAACAGAAATGTTGTTTGTTGGACAAGTCTCGTCAGTGGATATTGTAGTTACGGATTGGTTAATGAAGCGAGGGATGTGTTTGACAAAATGCCACAGAGAAATGAAGCGTCGTATAGTGCTATGGTTTCTGGGTGTGTTAGGAACGGTTTTTACAGTGAGGGAGTTCAACTATTCCGAGAGTTGAAGAAGAAGGACGAGGGTTGTGCTCGTGTGAAGTTCAATGGGGCCCTTTTGGTGAGTGTTCTTAACGCGTGTACAATGGTGGGTGCTTTTGAAGAAGGGAAATGGATTCATTCTTATGTTGAGGAAAATGGTTTGGAATATGATCTTGAGCTTGGAACTGCACTGATTGATTTCTACGCGAAATGTGGATGGGTGAAGGGCGCAGAGAAAGTTTTTGATAAAATGCCTGTTAAAGATGTTGCTACTTGGAGTGCTATGATTTTGGGTTTGGCTATTAATGGGAATAATAAAATGGCACTGGAACTGTTTGAGAAGATGGAGAAGGTTGGACCAAAGCCTAATGAGGTTACTTTTGTTGGGGTTCTTACCGCTTGCAATCATAAAAGTTTGTTTCGGGAGTCATCGCGGTTATTTGGAATTATGAGTGAAAAATATAACATCACGCCATCTATTGAACACTATGGATGTGTCGTTGATGTTTTGGCTCGAAGCGGACTAGTGACAAAGGCCTTAACTTTTATTAATAGTATGCATGTTGAACCAGATGGAGCCATATGGGGGTCTTTGCTCAATGGATGTTTGATGCATGGTCATTATGAATTGGGACAGAAAGTTGGCAAGTATTTGATAGAGTTTGAGCCTGAACATAGCGGTAGGTACGTCCTTTTGGCAAACATGTATGCCAATATGGGTAATTGGGAAGGTGTTTCTGAGGTAAGAAAACTGATGAAAGATAGGGGAGTGGTGATTATTTCTGGTTGGAGTTTCATTGAAATCGATCAAACCATACACAAGTTTTTTGCTGATGATAAATGTTGTTTATATTCAGGAGAAATATATGAAGTTTTAAGCCACCTGGGAAAGAAAGTTGAGAAATTTTCAGGAGACAAGGATTCTTTTTTTTGTTTGAAATTTGAATCACTAACTTGA

Protein sequence

>MS.gene69116.t1

MKQTKQIHAHAITNNLTRFSYISSRILAFFALSPQGDFRYAETLFTHMPNPNIFDYNSIITSYTINSQFDKSLSVFTKMLKTNIRPNSHTFTTLVKACTTLSSLEQIFTLSMKLGNSSDVYFVSSVINAFSKHGAVHLALQVFDESSNRNVVCWTSLVSGYCSYGLVNEARDVFDKMPQRNEASYSAMVSGCVRNGFYSEGVQLFRELKKKDEGCARVKFNGALLVSVLNACTMVGAFEEGKWIHSYVEENGLEYDLELGTALIDFYAKCGWVKGAEKVFDKMPVKDVATWSAMILGLAINGNNKMALELFEKMEKVGPKPNEVTFVGVLTACNHKSLFRESSRLFGIMSEKYNITPSIEHYGCVVDVLARSGLVTKALTFINSMHVEPDGAIWGSLLNGCLMHGHYELGQKVGKYLIEFEPEHSGRYVLLANMYANMGNWEGVSEVRKLMKDRGVVIISGWSFIEIDQTIHKFFADDKCCLYSGEIYEVLSHLGKKVEKFSGDKDSFFCLKFESLT