Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69148.t1 | XP_013455470.1 | 96.2 | 872 | 31 | 2 | 1 | 872 | 1 | 870 | 0.00E+00 | 1520.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69148.t1 | Q03164 | 27.5 | 207 | 125 | 8 | 141 | 335 | 1431 | 1624 | 4.5e-17 | 91.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69148.t1 | A0A072UJ97 | 96.2 | 872 | 31 | 2 | 1 | 872 | 1 | 870 | 0.0e+00 | 1520.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene69148.t1 | TR | PHD |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049786 | MS.gene69148 | 0.809131 | 2.20E-50 | -1.69E-46 |
| MS.gene050317 | MS.gene69148 | 0.809249 | 2.08E-50 | -1.69E-46 |
| MS.gene050556 | MS.gene69148 | 0.801313 | 9.55E-49 | -1.69E-46 |
| MS.gene050654 | MS.gene69148 | 0.830079 | 3.59E-55 | -1.69E-46 |
| MS.gene051956 | MS.gene69148 | 0.810229 | 1.28E-50 | -1.69E-46 |
| MS.gene052434 | MS.gene69148 | 0.834246 | 3.35E-56 | -1.69E-46 |
| MS.gene053381 | MS.gene69148 | 0.815228 | 1.03E-51 | -1.69E-46 |
| MS.gene054479 | MS.gene69148 | 0.840369 | 9.06E-58 | -1.69E-46 |
| MS.gene056045 | MS.gene69148 | 0.80188 | 7.31E-49 | -1.69E-46 |
| MS.gene056552 | MS.gene69148 | 0.80391 | 2.78E-49 | -1.69E-46 |
| MS.gene058081 | MS.gene69148 | 0.803367 | 3.61E-49 | -1.69E-46 |
| MS.gene058429 | MS.gene69148 | 0.814148 | 1.79E-51 | -1.69E-46 |
| MS.gene06010 | MS.gene69148 | 0.810527 | 1.10E-50 | -1.69E-46 |
| MS.gene060296 | MS.gene69148 | 0.807307 | 5.39E-50 | -1.69E-46 |
| MS.gene060683 | MS.gene69148 | 0.812405 | 4.31E-51 | -1.69E-46 |
| MS.gene060685 | MS.gene69148 | 0.812637 | 3.84E-51 | -1.69E-46 |
| MS.gene060851 | MS.gene69148 | 0.81137 | 7.24E-51 | -1.69E-46 |
| MS.gene060852 | MS.gene69148 | 0.809244 | 2.08E-50 | -1.69E-46 |
| MS.gene060869 | MS.gene69148 | 0.807106 | 5.94E-50 | -1.69E-46 |
| MS.gene060870 | MS.gene69148 | 0.810809 | 9.58E-51 | -1.69E-46 |
| MS.gene06121 | MS.gene69148 | 0.800994 | 1.11E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69148.t1 | MTR_4g037745 | 96.330 | 872 | 30 | 2 | 1 | 872 | 1 | 870 | 0.0 | 1740 |
| MS.gene69148.t1 | MTR_7g117355 | 38.571 | 70 | 40 | 1 | 269 | 338 | 339 | 405 | 7.52e-11 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69148.t1 | AT3G08020 | 49.664 | 894 | 313 | 20 | 1 | 872 | 1 | 779 | 0.0 | 764 |
| MS.gene69148.t1 | AT3G52100 | 45.603 | 614 | 272 | 17 | 1 | 577 | 1 | 589 | 5.50e-158 | 478 |
| MS.gene69148.t1 | AT3G52100 | 43.939 | 198 | 86 | 5 | 682 | 872 | 499 | 678 | 2.32e-31 | 131 |
| MS.gene69148.t1 | AT3G52100 | 45.603 | 614 | 272 | 17 | 1 | 577 | 1 | 589 | 1.35e-157 | 476 |
| MS.gene69148.t1 | AT3G52100 | 38.411 | 151 | 70 | 4 | 682 | 827 | 499 | 631 | 3.24e-16 | 83.6 |
| MS.gene69148.t1 | AT3G52100 | 44.657 | 627 | 277 | 18 | 1 | 577 | 1 | 607 | 6.86e-156 | 473 |
| MS.gene69148.t1 | AT3G52100 | 43.939 | 198 | 86 | 5 | 682 | 872 | 517 | 696 | 2.34e-31 | 131 |
| MS.gene69148.t1 | AT3G52100 | 45.402 | 522 | 232 | 12 | 86 | 577 | 4 | 502 | 1.20e-134 | 414 |
| MS.gene69148.t1 | AT3G52100 | 43.939 | 198 | 86 | 5 | 682 | 872 | 412 | 591 | 1.24e-31 | 131 |
Find 212 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAATAAGTTGGTTATAAATT+TGG | 0.123019 | 4.2:-65268690 | MS.gene69148:CDS |
| AAGCAATAAGGCAAATATTT+TGG | 0.136146 | 4.2:-65268762 | MS.gene69148:CDS |
| AACAATGATCTTTCTTTAAA+AGG | 0.142690 | 4.2:+65267535 | None:intergenic |
| AGGCCAATCAAAACATTTAA+AGG | 0.201369 | 4.2:-65267968 | MS.gene69148:CDS |
| CATCTTGGTAGGTGAATTAT+TGG | 0.205189 | 4.2:+65269096 | None:intergenic |
| TGTGACACTTTGTGTGTTTC+GGG | 0.231030 | 4.2:+65271312 | None:intergenic |
| CTGTGACACTTTGTGTGTTT+CGG | 0.235922 | 4.2:+65271311 | None:intergenic |
| AATAAGTTGGTTATAAATTT+GGG | 0.260701 | 4.2:-65268689 | MS.gene69148:CDS |
| GAAATTCATAGGTGGTTTCT+AGG | 0.262782 | 4.2:-65270716 | MS.gene69148:intron |
| AAGAAGCATTACCATGTAAT+TGG | 0.262907 | 4.2:+65274312 | None:intergenic |
| AGCATCACGCTTAGCTTTCA+TGG | 0.266381 | 4.2:+65273918 | None:intergenic |
| ATCAGACATCCGATGATTCT+TGG | 0.268452 | 4.2:-65267360 | MS.gene69148:intron |
| GATTCCCATCCACTTGAAAT+TGG | 0.272368 | 4.2:+65269460 | None:intergenic |
| CCTACCAAGATGAATGATTA+TGG | 0.283895 | 4.2:-65269085 | MS.gene69148:CDS |
| CCGCTAACAGCAACAATTTC+CGG | 0.284119 | 4.2:+65273982 | None:intergenic |
| GATACATCGGGCAATCTTAA+TGG | 0.302122 | 4.2:-65272701 | MS.gene69148:CDS |
| TCAAAACATTTAAAGGTTTA+CGG | 0.306095 | 4.2:-65267961 | MS.gene69148:CDS |
| AGTGAAGGTTTAGAATCTTT+TGG | 0.315117 | 4.2:+65267658 | None:intergenic |
| TTTGCAGAACATGAACTTAC+TGG | 0.319396 | 4.2:+65271488 | None:intergenic |
| CTATCCTCATCGTCAGAATA+TGG | 0.325229 | 4.2:+65269178 | None:intergenic |
| GGCGGCGGTGGCACCACTTT+CGG | 0.327840 | 4.2:+65274006 | None:intergenic |
| AAGAGGTGAAAGGACATATT+TGG | 0.331287 | 4.2:-65267755 | MS.gene69148:CDS |
| GCTGGACATATTGATGTTAA+AGG | 0.338929 | 4.2:-65268131 | MS.gene69148:intron |
| AGAATTTGTTTCTGTTCGTT+AGG | 0.339995 | 4.2:-65274156 | MS.gene69148:CDS |
| AGGATGCTGTTCAAGAGCTT+TGG | 0.345011 | 4.2:-65269291 | MS.gene69148:CDS |
| TCAGGAAGTAGGGTTGATTC+AGG | 0.347441 | 4.2:-65267988 | MS.gene69148:intron |
| CACTATGTCCTTCAAAACTA+TGG | 0.351617 | 4.2:+65268987 | None:intergenic |
| ACTTGTTTCCCTTCGTCAAA+TGG | 0.359111 | 4.2:+65268180 | None:intergenic |
| TGTTCGAATTAAAAGCAATA+AGG | 0.361567 | 4.2:-65268774 | MS.gene69148:CDS |
| TCAAGGGCCAGAGGTCAAAA+AGG | 0.379966 | 4.2:-65267570 | MS.gene69148:CDS |
| TCTCGATGAGGTGAATTTGC+TGG | 0.386742 | 4.2:-65274088 | MS.gene69148:CDS |
| CTTGTTTCCCTTCGTCAAAT+GGG | 0.387298 | 4.2:+65268181 | None:intergenic |
| GGGTGAAGTTGGTCCTTTAG+AGG | 0.394114 | 4.2:-65267848 | MS.gene69148:CDS |
| CCGTTATTACCTCACAAATT+CGG | 0.395579 | 4.2:+65272405 | None:intergenic |
| TTGTCGTGGGGAATGTTATC+AGG | 0.399762 | 4.2:-65269418 | MS.gene69148:intron |
| ATTGCCAGTGTGATGATATT+AGG | 0.401375 | 4.2:-65270102 | MS.gene69148:intron |
| ATGATCAACCAAGTTGGATT+AGG | 0.402380 | 4.2:-65267787 | MS.gene69148:CDS |
| GCAGGTGATGAATAAATATC+AGG | 0.409921 | 4.2:+65268911 | None:intergenic |
| TATTAGATCTTTACGTAGCT+TGG | 0.410922 | 4.2:-65268963 | MS.gene69148:CDS |
| CAATCTTAATGGAGAAGAAC+AGG | 0.416156 | 4.2:-65272690 | MS.gene69148:CDS |
| AAAATCCCTGTCTGATTGAC+AGG | 0.418712 | 4.2:+65268854 | None:intergenic |
| ATCGTCAGAATATGGTGAAA+TGG | 0.420114 | 4.2:+65269186 | None:intergenic |
| ATGAGAACATGGATGCAAAC+TGG | 0.421404 | 4.2:-65267432 | MS.gene69148:CDS |
| GAAAATATTTCTTCTTGTGT+TGG | 0.421725 | 4.2:+65269208 | None:intergenic |
| ATTTATTCATCACCTGCTAC+TGG | 0.429638 | 4.2:-65268905 | MS.gene69148:CDS |
| GAAGGAAACACAATCAAGTT+CGG | 0.431897 | 4.2:-65267934 | MS.gene69148:CDS |
| CCGGAAATTGTTGCTGTTAG+CGG | 0.434395 | 4.2:-65273982 | MS.gene69148:CDS |
| AAGGAAACACAATCAAGTTC+GGG | 0.437530 | 4.2:-65267933 | MS.gene69148:CDS |
| CGAAAGTCAAAATTCTCATC+AGG | 0.439205 | 4.2:-65267611 | MS.gene69148:CDS |
| ATGCTGTTCAAGAGCTTTGG+AGG | 0.441727 | 4.2:-65269288 | MS.gene69148:CDS |
| GAATCATTCTTTAACTTCAA+AGG | 0.447866 | 4.2:+65269151 | None:intergenic |
| ATTTATTTCATTGGAGTTCG+TGG | 0.447943 | 4.2:-65272442 | MS.gene69148:CDS |
| ATAGGAGCTGCTTGAAAAGT+TGG | 0.450677 | 4.2:-65272559 | MS.gene69148:CDS |
| TTACTGTCCTGTTTGTTTGA+AGG | 0.452325 | 4.2:-65270648 | MS.gene69148:intron |
| CTACATGTTACTTACGATGA+TGG | 0.452765 | 4.2:-65266880 | MS.gene69148:CDS |
| ATCTTGGTAGGTGAATTATT+GGG | 0.454003 | 4.2:+65269097 | None:intergenic |
| ACCGGTACCTTCAAACAAAC+AGG | 0.454699 | 4.2:+65270641 | None:intergenic |
| ATTGTTGCTGTTAGCGGTGG+TGG | 0.455700 | 4.2:-65273976 | MS.gene69148:CDS |
| GAATTTGTTTCTGTTCGTTA+GGG | 0.455855 | 4.2:-65274155 | MS.gene69148:CDS |
| TTTCCCTTCGTCAAATGGGC+TGG | 0.455866 | 4.2:+65268185 | None:intergenic |
| GTGAATTTGCCGGTGATTCA+CGG | 0.457784 | 4.2:-65274065 | MS.gene69148:CDS |
| ACAATTTCCGGCGGCGGCGG+TGG | 0.459269 | 4.2:+65273994 | None:intergenic |
| GTTAGCGGTGGTGGTGGTGG+TGG | 0.459911 | 4.2:-65273967 | MS.gene69148:CDS |
| TATCACCAATTTCAAGTGGA+TGG | 0.460018 | 4.2:-65269465 | MS.gene69148:CDS |
| TATTCTGACGATGAGGATAG+TGG | 0.460236 | 4.2:-65269175 | MS.gene69148:CDS |
| TATGCTAGGAGGCTTGAATC+TGG | 0.462814 | 4.2:-65273853 | MS.gene69148:CDS |
| AATTTGCTGGGTGAATTTGC+CGG | 0.464032 | 4.2:-65274075 | MS.gene69148:CDS |
| GGTGAAGTTGGTCCTTTAGA+GGG | 0.464502 | 4.2:-65267847 | MS.gene69148:CDS |
| CTCGATGAGGTGAATTTGCT+GGG | 0.465558 | 4.2:-65274087 | MS.gene69148:CDS |
| TGACTCAAGCTTCCAGTAGC+AGG | 0.469535 | 4.2:+65268893 | None:intergenic |
| TCTGAATTCAACTTCACCTC+TGG | 0.469813 | 4.2:-65267892 | MS.gene69148:CDS |
| CTTTCCATAATCATTCATCT+TGG | 0.470156 | 4.2:+65269081 | None:intergenic |
| GATGCAGACTCTACCTTATG+AGG | 0.470739 | 4.2:+65271426 | None:intergenic |
| GCTGTTAGCGGTGGTGGTGG+TGG | 0.472919 | 4.2:-65273970 | MS.gene69148:CDS |
| TGACCTCTGGCCCTTGATTG+TGG | 0.479701 | 4.2:+65267576 | None:intergenic |
| TGTGTGTTTCGGGCACAGAT+AGG | 0.482358 | 4.2:+65271322 | None:intergenic |
| TTCTCCCTTCCGTGAATCAC+CGG | 0.483482 | 4.2:+65274056 | None:intergenic |
| GTGTGTTTCGGGCACAGATA+GGG | 0.484632 | 4.2:+65271323 | None:intergenic |
| GATCTTTCTTTAAAAGGTGA+AGG | 0.485940 | 4.2:+65267541 | None:intergenic |
| CTGTCTGCAACCTCCTCATA+AGG | 0.486512 | 4.2:-65271439 | MS.gene69148:intron |
| CGACAAGTAGGACATGTATA+CGG | 0.487950 | 4.2:+65269435 | None:intergenic |
| TCTTGTCCTGTCAATCAGAC+AGG | 0.488284 | 4.2:-65268860 | MS.gene69148:CDS |
| TGATGGAAAAGTGAGTATCT+TGG | 0.491862 | 4.2:-65266863 | MS.gene69148:CDS |
| TATCTTGGAACTCAGGAAGC+AGG | 0.492514 | 4.2:-65266848 | MS.gene69148:CDS |
| GCTGTGATCATTGCCAACGC+TGG | 0.494890 | 4.2:-65270129 | MS.gene69148:CDS |
| ACAAATTCGGCAAGCACGGC+AGG | 0.495002 | 4.2:+65272418 | None:intergenic |
| ACGTTGCTTGTCCAATTACA+TGG | 0.496718 | 4.2:-65274323 | MS.gene69148:intron |
| AGAGGAGAAGACCACAATCA+AGG | 0.497579 | 4.2:-65267587 | MS.gene69148:CDS |
| GGGTTTCCGCGTTCTCTGAA+CGG | 0.498481 | 4.2:-65274135 | MS.gene69148:CDS |
| CGTGATGCTCTTCAGAGAAA+AGG | 0.498878 | 4.2:-65273904 | MS.gene69148:CDS |
| TGAAGGTAAAGAAAGATCAT+TGG | 0.499874 | 4.2:-65267503 | MS.gene69148:CDS |
| AAAAGTTGGTCTAATAATAG+AGG | 0.500565 | 4.2:-65272545 | MS.gene69148:intron |
| GATAGACACGATGGAGCAGC+TGG | 0.501466 | 4.2:-65268149 | MS.gene69148:CDS |
| GTAAGTAACATGTAGATTTG+AGG | 0.501844 | 4.2:+65266888 | None:intergenic |
| GTTGTAGTAAGAAGTACCAT+AGG | 0.505771 | 4.2:-65272577 | MS.gene69148:CDS |
| GAAGGTGCAAGTCAATCTCC+TGG | 0.506230 | 4.2:-65267469 | MS.gene69148:CDS |
| AGGCACAAGGGAGAGGTGAC+TGG | 0.507871 | 4.2:-65266925 | MS.gene69148:CDS |
| TTGCAGAACATGAACTTACT+GGG | 0.510009 | 4.2:+65271489 | None:intergenic |
| TCATGATTTATATTCTCTCC+AGG | 0.512210 | 4.2:+65267451 | None:intergenic |
| TGCTGCTATGATTGCTGCTG+AGG | 0.512543 | 4.2:-65273878 | MS.gene69148:CDS |
| ATGCAATCTCAGAGAAATGA+AGG | 0.514018 | 4.2:-65268935 | MS.gene69148:CDS |
| GAGGAGAAGACCACAATCAA+GGG | 0.514194 | 4.2:-65267586 | MS.gene69148:CDS |
| GCAACAATTTCCGGCGGCGG+CGG | 0.514824 | 4.2:+65273991 | None:intergenic |
| TACATGTTTGTCCAGGCACA+AGG | 0.514884 | 4.2:-65266938 | MS.gene69148:intron |
| ACCAGCTTGAGGGCTGCAGC+TGG | 0.516002 | 4.2:-65269235 | MS.gene69148:CDS |
| CGGGGAAAACGTAGTACTCA+TGG | 0.516403 | 4.2:-65267811 | MS.gene69148:CDS |
| TTCAACTTCACCTCTGGTAG+AGG | 0.517716 | 4.2:-65267886 | MS.gene69148:CDS |
| GACTCTCTGTCATTAAAGAC+GGG | 0.518085 | 4.2:-65269025 | MS.gene69148:CDS |
| TTAAAGGTTTACGGAAGAGA+AGG | 0.519410 | 4.2:-65267952 | MS.gene69148:CDS |
| CAAGATCTGGTTACTGCCAA+TGG | 0.520282 | 4.2:-65268605 | MS.gene69148:intron |
| AGTGGTGCCACCGCCGCCGC+CGG | 0.520952 | 4.2:-65274001 | MS.gene69148:CDS |
| ATCTAGGCTTGCAGAAGGAC+CGG | 0.522269 | 4.2:-65271516 | MS.gene69148:intron |
| TCAAAATTCTCATCAGGAAG+AGG | 0.522988 | 4.2:-65267605 | MS.gene69148:CDS |
| CCATAATCATTCATCTTGGT+AGG | 0.524350 | 4.2:+65269085 | None:intergenic |
| TCGACAAAAGACCTTTACAT+TGG | 0.526937 | 4.2:+65272661 | None:intergenic |
| AGTTGCGCATCCAATGTCCC+TGG | 0.528835 | 4.2:-65271290 | MS.gene69148:CDS |
| AGAGTTAATTACCAGCTTGA+GGG | 0.528910 | 4.2:-65269245 | MS.gene69148:CDS |
| CTGTGATCATTGCCAACGCT+GGG | 0.532413 | 4.2:-65270128 | MS.gene69148:CDS |
| CTTTCAAAGAGATCAAGATC+TGG | 0.533607 | 4.2:-65268618 | MS.gene69148:CDS |
| GATTCACGGAAGGGAGAAGA+TGG | 0.535378 | 4.2:-65274051 | MS.gene69148:CDS |
| GGACTCTCTGTCATTAAAGA+CGG | 0.538451 | 4.2:-65269026 | MS.gene69148:CDS |
| AAGAGTTAATTACCAGCTTG+AGG | 0.540719 | 4.2:-65269246 | MS.gene69148:CDS |
| ACAGCAACAATTTCCGGCGG+CGG | 0.541618 | 4.2:+65273988 | None:intergenic |
| AAGTGAGTATCTTGGAACTC+AGG | 0.543351 | 4.2:-65266855 | MS.gene69148:CDS |
| GCATCCAATGTCCCTGGGAA+TGG | 0.543385 | 4.2:-65271284 | MS.gene69148:CDS |
| TATACATGTCCTACTTGTCG+TGG | 0.545527 | 4.2:-65269432 | MS.gene69148:CDS |
| TAGTCCATTCCCAGGGACAT+TGG | 0.546556 | 4.2:+65271280 | None:intergenic |
| CAATGATCACAGCAAACCAT+TGG | 0.548899 | 4.2:+65270139 | None:intergenic |
| TCAAGTTGCGGTGCCGAAAG+TGG | 0.549626 | 4.2:-65274019 | MS.gene69148:CDS |
| ACCAGCTGCAGCCCTCAAGC+TGG | 0.551122 | 4.2:+65269234 | None:intergenic |
| TGATGGTCAGTGATGAAGAA+AGG | 0.551814 | 4.2:-65268808 | MS.gene69148:CDS |
| ATCACCAATTTCAAGTGGAT+GGG | 0.551981 | 4.2:-65269464 | MS.gene69148:CDS |
| ATGATGTGAGATCCCTCTAA+AGG | 0.552018 | 4.2:+65267835 | None:intergenic |
| CATGGAATGATCAACCAAGT+TGG | 0.552171 | 4.2:-65267793 | MS.gene69148:CDS |
| GAGGTGACTGGTGTAGTTGA+AGG | 0.554422 | 4.2:-65266913 | MS.gene69148:CDS |
| GTAGAGGCAATATGTCGGAT+GGG | 0.555682 | 4.2:-65267870 | MS.gene69148:CDS |
| AAATTGGGAAGTGATGCAAT+TGG | 0.556017 | 4.2:-65267400 | MS.gene69148:CDS |
| TTTGTCCAGGCACAAGGGAG+AGG | 0.556726 | 4.2:-65266932 | MS.gene69148:intron |
| GTGGAAGATTGTTTGTGAAA+GGG | 0.560028 | 4.2:-65270673 | MS.gene69148:CDS |
| TGTGGAAGATTGTTTGTGAA+AGG | 0.560702 | 4.2:-65270674 | MS.gene69148:CDS |
| CCTCACAAATTCGGCAAGCA+CGG | 0.563825 | 4.2:+65272414 | None:intergenic |
| GAAACGCAAGTTTAATGATG+AGG | 0.565784 | 4.2:-65268831 | MS.gene69148:CDS |
| CGGAACGAAGAACGCGACGA+AGG | 0.567316 | 4.2:-65274115 | MS.gene69148:CDS |
| GGTAGAGGCAATATGTCGGA+TGG | 0.568298 | 4.2:-65267871 | MS.gene69148:CDS |
| CTCACACTTAGTCCATTCCC+AGG | 0.568843 | 4.2:+65271272 | None:intergenic |
| AATGTGAAGGCATGTGATTA+TGG | 0.569243 | 4.2:+65267686 | None:intergenic |
| GCTTGAATCTGGCGATGTTG+TGG | 0.569400 | 4.2:-65273842 | MS.gene69148:intron |
| AGAGGGATCTCACATCATGC+GGG | 0.569444 | 4.2:-65267830 | MS.gene69148:CDS |
| CAAGTTTAATGATGAGGTGA+TGG | 0.571084 | 4.2:-65268825 | MS.gene69148:CDS |
| ACAGGGGCAATCCAATGTAA+AGG | 0.572393 | 4.2:-65272672 | MS.gene69148:CDS |
| TTTCGGGCACAGATAGGGCC+CGG | 0.574692 | 4.2:+65271328 | None:intergenic |
| ATAATGCAGAATGTTAGTAC+CGG | 0.578902 | 4.2:-65271347 | MS.gene69148:intron |
| CATGAACTTACTGGGATCAC+CGG | 0.580670 | 4.2:+65271497 | None:intergenic |
| AAGATATCACCAATTTCAAG+TGG | 0.584262 | 4.2:-65269469 | MS.gene69148:CDS |
| GTTGCTGTTAGCGGTGGTGG+TGG | 0.584403 | 4.2:-65273973 | MS.gene69148:CDS |
| TAGAGGCAATATGTCGGATG+GGG | 0.586954 | 4.2:-65267869 | MS.gene69148:CDS |
| ATCTTGGAACTCAGGAAGCA+GGG | 0.589506 | 4.2:-65266847 | MS.gene69148:CDS |
| GGATTAGGTGCAACATCAAG+AGG | 0.591204 | 4.2:-65267772 | MS.gene69148:CDS |
| TGGTGGAACGATTCAAGTTG+CGG | 0.592724 | 4.2:-65274031 | MS.gene69148:CDS |
| ATACATGTCCTACTTGTCGT+GGG | 0.593002 | 4.2:-65269431 | MS.gene69148:CDS |
| ACTGGCAATGCACCCAGCGT+TGG | 0.598301 | 4.2:+65270116 | None:intergenic |
| ATTTGCCGGTGATTCACGGA+AGG | 0.600718 | 4.2:-65274061 | MS.gene69148:CDS |
| GAATATAAATCATGAGAACA+TGG | 0.604777 | 4.2:-65267443 | MS.gene69148:CDS |
| GCTTCATCTAGGCTTGCAGA+AGG | 0.606594 | 4.2:-65271521 | MS.gene69148:intron |
| GTTGCGCATCCAATGTCCCT+GGG | 0.607039 | 4.2:-65271289 | MS.gene69148:CDS |
| AATCCAGCCCATTTGACGAA+GGG | 0.608149 | 4.2:-65268188 | MS.gene69148:CDS |
| ATGTTGCACCTAATCCAACT+TGG | 0.608474 | 4.2:+65267779 | None:intergenic |
| ATTCTGACGATGAGGATAGT+GGG | 0.608708 | 4.2:-65269174 | MS.gene69148:CDS |
| CTTGTCCTGTCAATCAGACA+GGG | 0.609494 | 4.2:-65268859 | MS.gene69148:CDS |
| AGATTCAGAGTCAACACCAA+TGG | 0.610286 | 4.2:-65270155 | MS.gene69148:CDS |
| AGGCACTAACCAAGAATCAT+CGG | 0.613042 | 4.2:+65267351 | None:intergenic |
| TGGTTATAAATTTGGGAGCG+CGG | 0.615675 | 4.2:-65268682 | MS.gene69148:CDS |
| TCACGGAAGGGAGAAGATGG+TGG | 0.616640 | 4.2:-65274048 | MS.gene69148:CDS |
| GAAATTGTTGCTGTTAGCGG+TGG | 0.617826 | 4.2:-65273979 | MS.gene69148:CDS |
| TAGAGGGATCTCACATCATG+CGG | 0.619845 | 4.2:-65267831 | MS.gene69148:CDS |
| TGCAATCGTGTCGAGAACGA+AGG | 0.621522 | 4.2:-65272635 | MS.gene69148:CDS |
| ATGTTCTGCAAAAGATGTGA+TGG | 0.623740 | 4.2:-65271477 | MS.gene69148:CDS |
| TTGCTGCTGAGGAGTATGCT+AGG | 0.624374 | 4.2:-65273867 | MS.gene69148:CDS |
| TTCACCATATTCTGACGATG+AGG | 0.627848 | 4.2:-65269182 | MS.gene69148:CDS |
| TGTTCAGGTCAAGAATCTTG+AGG | 0.629657 | 4.2:-65269311 | MS.gene69148:intron |
| TAATGCAGAATGTTAGTACC+GGG | 0.629970 | 4.2:-65271346 | MS.gene69148:intron |
| TAACATTCCCCACGACAAGT+AGG | 0.631142 | 4.2:+65269423 | None:intergenic |
| GTGCAACATCAAGAGGTGAA+AGG | 0.631308 | 4.2:-65267765 | MS.gene69148:CDS |
| AGAGGCAATATGTCGGATGG+GGG | 0.631575 | 4.2:-65267868 | MS.gene69148:CDS |
| TTTGCCGGTGATTCACGGAA+GGG | 0.631810 | 4.2:-65274060 | MS.gene69148:CDS |
| CTCTGGTAGAGGCAATATGT+CGG | 0.634821 | 4.2:-65267875 | MS.gene69148:CDS |
| CCGTGCTTGCCGAATTTGTG+AGG | 0.635864 | 4.2:-65272414 | MS.gene69148:intron |
| TAGCTCTGATGTATATGATG+AGG | 0.637189 | 4.2:-65267716 | MS.gene69148:CDS |
| TATTTGGCGAAGCAGTCAGA+AGG | 0.638353 | 4.2:-65267739 | MS.gene69148:CDS |
| AATCTTAATGGAGAAGAACA+GGG | 0.647951 | 4.2:-65272689 | MS.gene69148:CDS |
| TCATTGTTTAATGACTCTGA+AGG | 0.648459 | 4.2:-65267520 | MS.gene69148:CDS |
| CGACATATTGCCTCTACCAG+AGG | 0.648612 | 4.2:+65267876 | None:intergenic |
| AAATCCAGCCCATTTGACGA+AGG | 0.650722 | 4.2:-65268189 | MS.gene69148:CDS |
| GAGGTTGCAGACAGTAACAA+TGG | 0.654117 | 4.2:+65271448 | None:intergenic |
| TTCGTTCCGTTCAGAGAACG+CGG | 0.654302 | 4.2:+65274129 | None:intergenic |
| TCACACTTAGTCCATTCCCA+GGG | 0.656715 | 4.2:+65271273 | None:intergenic |
| GGTGAAGAGAGTGGAAAACG+TGG | 0.662930 | 4.2:-65268737 | MS.gene69148:CDS |
| CTAACCTAATATCATCACAC+TGG | 0.667427 | 4.2:+65270098 | None:intergenic |
| TCATTGGTTAATGACTCTGA+AGG | 0.671545 | 4.2:-65267487 | MS.gene69148:CDS |
| ACATGTTTGTCCAGGCACAA+GGG | 0.672799 | 4.2:-65266937 | MS.gene69148:intron |
| ATCTTAATGGAGAAGAACAG+GGG | 0.675777 | 4.2:-65272688 | MS.gene69148:CDS |
| AGACCACAATCAAGGGCCAG+AGG | 0.675986 | 4.2:-65267579 | MS.gene69148:CDS |
| CTGGGAATGGACTAAGTGTG+AGG | 0.676321 | 4.2:-65271271 | MS.gene69148:intron |
| GAGGGATCTCACATCATGCG+GGG | 0.683546 | 4.2:-65267829 | MS.gene69148:CDS |
| TACACGTGCTGTGATGCATG+TGG | 0.687934 | 4.2:-65270692 | MS.gene69148:CDS |
| AAGTTGAATTCAGAAACACT+TGG | 0.688131 | 4.2:+65267901 | None:intergenic |
| GCAGACTCTACCTTATGAGG+AGG | 0.688668 | 4.2:+65271429 | None:intergenic |
| TACATGTCCTACTTGTCGTG+GGG | 0.688869 | 4.2:-65269430 | MS.gene69148:CDS |
| TTTGCATTAGATAGACACGA+TGG | 0.690480 | 4.2:-65268158 | MS.gene69148:CDS |
| CTGCTGAGGAGTATGCTAGG+AGG | 0.692798 | 4.2:-65273864 | MS.gene69148:CDS |
| AAGCTAGCATTATCAGACAG+CGG | 0.717787 | 4.2:+65268638 | None:intergenic |
| CTAACAGCAACAATTTCCGG+CGG | 0.727273 | 4.2:+65273985 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 65266804 | 65274355 | 65266804 | ID=MS.gene69148 |
| chr4.2 | mRNA | 65266804 | 65274355 | 65266804 | ID=MS.gene69148.t1;Parent=MS.gene69148 |
| chr4.2 | exon | 65274324 | 65274355 | 65274324 | ID=MS.gene69148.t1.exon1;Parent=MS.gene69148.t1 |
| chr4.2 | CDS | 65274324 | 65274355 | 65274324 | ID=cds.MS.gene69148.t1;Parent=MS.gene69148.t1 |
| chr4.2 | exon | 65273843 | 65274182 | 65273843 | ID=MS.gene69148.t1.exon2;Parent=MS.gene69148.t1 |
| chr4.2 | CDS | 65273843 | 65274182 | 65273843 | ID=cds.MS.gene69148.t1;Parent=MS.gene69148.t1 |
| chr4.2 | exon | 65272546 | 65272723 | 65272546 | ID=MS.gene69148.t1.exon3;Parent=MS.gene69148.t1 |
| chr4.2 | CDS | 65272546 | 65272723 | 65272546 | ID=cds.MS.gene69148.t1;Parent=MS.gene69148.t1 |
| chr4.2 | exon | 65272415 | 65272464 | 65272415 | ID=MS.gene69148.t1.exon4;Parent=MS.gene69148.t1 |
| chr4.2 | CDS | 65272415 | 65272464 | 65272415 | ID=cds.MS.gene69148.t1;Parent=MS.gene69148.t1 |
| chr4.2 | exon | 65271440 | 65271532 | 65271440 | ID=MS.gene69148.t1.exon5;Parent=MS.gene69148.t1 |
| chr4.2 | CDS | 65271440 | 65271532 | 65271440 | ID=cds.MS.gene69148.t1;Parent=MS.gene69148.t1 |
| chr4.2 | exon | 65271272 | 65271360 | 65271272 | ID=MS.gene69148.t1.exon6;Parent=MS.gene69148.t1 |
| chr4.2 | CDS | 65271272 | 65271360 | 65271272 | ID=cds.MS.gene69148.t1;Parent=MS.gene69148.t1 |
| chr4.2 | exon | 65270649 | 65270727 | 65270649 | ID=MS.gene69148.t1.exon7;Parent=MS.gene69148.t1 |
| chr4.2 | CDS | 65270649 | 65270727 | 65270649 | ID=cds.MS.gene69148.t1;Parent=MS.gene69148.t1 |
| chr4.2 | exon | 65270103 | 65270185 | 65270103 | ID=MS.gene69148.t1.exon8;Parent=MS.gene69148.t1 |
| chr4.2 | CDS | 65270103 | 65270185 | 65270103 | ID=cds.MS.gene69148.t1;Parent=MS.gene69148.t1 |
| chr4.2 | exon | 65269419 | 65269497 | 65269419 | ID=MS.gene69148.t1.exon9;Parent=MS.gene69148.t1 |
| chr4.2 | CDS | 65269419 | 65269497 | 65269419 | ID=cds.MS.gene69148.t1;Parent=MS.gene69148.t1 |
| chr4.2 | exon | 65268606 | 65269326 | 65268606 | ID=MS.gene69148.t1.exon10;Parent=MS.gene69148.t1 |
| chr4.2 | CDS | 65268606 | 65269326 | 65268606 | ID=cds.MS.gene69148.t1;Parent=MS.gene69148.t1 |
| chr4.2 | exon | 65268132 | 65268218 | 65268132 | ID=MS.gene69148.t1.exon11;Parent=MS.gene69148.t1 |
| chr4.2 | CDS | 65268132 | 65268218 | 65268132 | ID=cds.MS.gene69148.t1;Parent=MS.gene69148.t1 |
| chr4.2 | exon | 65267361 | 65268006 | 65267361 | ID=MS.gene69148.t1.exon12;Parent=MS.gene69148.t1 |
| chr4.2 | CDS | 65267361 | 65268006 | 65267361 | ID=cds.MS.gene69148.t1;Parent=MS.gene69148.t1 |
| chr4.2 | exon | 65266804 | 65266945 | 65266804 | ID=MS.gene69148.t1.exon13;Parent=MS.gene69148.t1 |
| chr4.2 | CDS | 65266804 | 65266945 | 65266804 | ID=cds.MS.gene69148.t1;Parent=MS.gene69148.t1 |
| Gene Sequence |
| Protein sequence |
