Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72626.t1 | AES76078.2 | 93.1 | 260 | 14 | 1 | 1 | 256 | 19 | 278 | 2.90E-136 | 494.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72626.t1 | Q9D0M2 | 32.9 | 146 | 71 | 6 | 109 | 254 | 239 | 357 | 3.2e-11 | 70.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72626.t1 | G7KQ98 | 93.1 | 260 | 14 | 1 | 1 | 256 | 19 | 278 | 2.1e-136 | 494.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049989 | MS.gene72626 | 0.831728 | 1.42E-55 | -1.69E-46 |
| MS.gene050297 | MS.gene72626 | 0.820944 | 5.25E-53 | -1.69E-46 |
| MS.gene05124 | MS.gene72626 | 0.807008 | 6.23E-50 | -1.69E-46 |
| MS.gene053173 | MS.gene72626 | 0.822193 | 2.70E-53 | -1.69E-46 |
| MS.gene053348 | MS.gene72626 | 0.821561 | 3.78E-53 | -1.69E-46 |
| MS.gene053416 | MS.gene72626 | 0.80111 | 1.05E-48 | -1.69E-46 |
| MS.gene054551 | MS.gene72626 | 0.819812 | 9.54E-53 | -1.69E-46 |
| MS.gene054593 | MS.gene72626 | 0.804711 | 1.89E-49 | -1.69E-46 |
| MS.gene055411 | MS.gene72626 | 0.80103 | 1.09E-48 | -1.69E-46 |
| MS.gene055957 | MS.gene72626 | 0.841544 | 4.46E-58 | -1.69E-46 |
| MS.gene056041 | MS.gene72626 | 0.834228 | 3.38E-56 | -1.69E-46 |
| MS.gene056042 | MS.gene72626 | 0.825303 | 5.05E-54 | -1.69E-46 |
| MS.gene05640 | MS.gene72626 | 0.809867 | 1.53E-50 | -1.69E-46 |
| MS.gene056526 | MS.gene72626 | 0.815629 | 8.38E-52 | -1.69E-46 |
| MS.gene057458 | MS.gene72626 | 0.800693 | 1.28E-48 | -1.69E-46 |
| MS.gene058818 | MS.gene72626 | 0.814903 | 1.22E-51 | -1.69E-46 |
| MS.gene060473 | MS.gene72626 | 0.817027 | 4.08E-52 | -1.69E-46 |
| MS.gene060565 | MS.gene72626 | 0.807219 | 5.63E-50 | -1.69E-46 |
| MS.gene06057 | MS.gene72626 | 0.838571 | 2.66E-57 | -1.69E-46 |
| MS.gene06093 | MS.gene72626 | 0.801157 | 1.03E-48 | -1.69E-46 |
| MS.gene061099 | MS.gene72626 | 0.823102 | 1.66E-53 | -1.69E-46 |
| MS.gene061260 | MS.gene72626 | 0.80171 | 7.92E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72626.t1 | MTR_6g070950 | 93.077 | 260 | 14 | 1 | 1 | 256 | 19 | 278 | 8.11e-179 | 493 |
| MS.gene72626.t1 | MTR_5g018400 | 28.740 | 254 | 120 | 9 | 1 | 250 | 39 | 235 | 2.43e-13 | 69.3 |
| MS.gene72626.t1 | MTR_0024s0330 | 37.719 | 114 | 48 | 3 | 145 | 258 | 37 | 127 | 4.16e-13 | 69.3 |
| MS.gene72626.t1 | MTR_6g017265 | 36.434 | 129 | 55 | 5 | 134 | 258 | 31 | 136 | 7.31e-12 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72626.t1 | AT4G37110 | 30.112 | 269 | 134 | 9 | 1 | 259 | 39 | 263 | 2.83e-20 | 89.7 |
| MS.gene72626.t1 | AT4G37110 | 37.209 | 129 | 55 | 3 | 131 | 259 | 66 | 168 | 1.96e-17 | 80.9 |
| MS.gene72626.t1 | AT4G37110 | 37.209 | 129 | 55 | 3 | 131 | 259 | 66 | 168 | 1.96e-17 | 80.9 |
| MS.gene72626.t1 | AT4G37110 | 37.209 | 129 | 55 | 3 | 131 | 259 | 148 | 250 | 3.57e-17 | 80.9 |
| MS.gene72626.t1 | AT2G23530 | 27.969 | 261 | 113 | 9 | 1 | 250 | 39 | 235 | 7.44e-14 | 71.2 |
| MS.gene72626.t1 | AT1G67780 | 36.522 | 115 | 44 | 4 | 143 | 254 | 24 | 112 | 7.45e-12 | 65.5 |
| MS.gene72626.t1 | AT1G67780 | 36.522 | 115 | 44 | 4 | 143 | 254 | 24 | 112 | 7.45e-12 | 65.5 |
Find 63 sgRNAs with CRISPR-Local
Find 188 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAAAGGTAACTGCAGAAAA+TGG | 0.213288 | 6.4:-48346281 | MS.gene72626:CDS |
| AACAACGTACACCTGTTAAA+AGG | 0.219507 | 6.4:-48347385 | MS.gene72626:CDS |
| GAAGGCTAGGTTAGAATCTT+TGG | 0.233193 | 6.4:-48347462 | MS.gene72626:intron |
| ACACCTGTTAAAAGGGTTTA+TGG | 0.240841 | 6.4:-48347377 | MS.gene72626:CDS |
| CAGTATCTACAATCCAGTTT+TGG | 0.310852 | 6.4:-48346114 | MS.gene72626:CDS |
| AGAAAGGAATAAGACCTTAT+TGG | 0.336569 | 6.4:-48344583 | MS.gene72626:CDS |
| GTACGTTGTTGTTTCTTAGT+TGG | 0.358362 | 6.4:+48347398 | None:intergenic |
| GACCTTATTGGATATGTAAC+AGG | 0.372337 | 6.4:-48344571 | MS.gene72626:intron |
| AAGGCTAGGTTAGAATCTTT+GGG | 0.379877 | 6.4:-48347461 | MS.gene72626:CDS |
| AGAAAATGCTCTACATCCTT+CGG | 0.383546 | 6.4:+48346182 | None:intergenic |
| AAACGAAAGATGTCGCCAAC+TGG | 0.392964 | 6.4:-48344384 | MS.gene72626:CDS |
| TGGCAGCATATCCCCAAAAC+TGG | 0.395004 | 6.4:+48346101 | None:intergenic |
| GAAAATGCTCTACATCCTTC+GGG | 0.396073 | 6.4:+48346183 | None:intergenic |
| AAAAGGTAACTGCAGAAAAT+GGG | 0.406202 | 6.4:-48346280 | MS.gene72626:CDS |
| TGCGCGGCGCTGCGATAGCA+AGG | 0.412089 | 6.4:-48346144 | MS.gene72626:CDS |
| ACAACGTACACCTGTTAAAA+GGG | 0.463307 | 6.4:-48347384 | MS.gene72626:CDS |
| GCCTGTCTCAAGGTTCGTTA+TGG | 0.472682 | 6.4:-48345213 | MS.gene72626:CDS |
| TACCTGTTACATATCCAATA+AGG | 0.483081 | 6.4:+48344569 | None:intergenic |
| GATGTGAATGAACCTTGTTT+AGG | 0.485053 | 6.4:-48345367 | MS.gene72626:intron |
| GCGTCGATCTCAGCGAATCA+AGG | 0.500844 | 6.4:-48347342 | MS.gene72626:CDS |
| CCTTTCTCTTCTATGCAATG+TGG | 0.502029 | 6.4:+48344599 | None:intergenic |
| TTGAAACTACTGATGAGAAA+AGG | 0.503617 | 6.4:-48346235 | MS.gene72626:CDS |
| CGCTGCGATAGCAAGGGTAG+AGG | 0.503993 | 6.4:-48346137 | MS.gene72626:CDS |
| CGCTCGCATGTCAGAAAACA+AGG | 0.512896 | 6.4:-48347577 | None:intergenic |
| CTTTCTCTTCTATGCAATGT+GGG | 0.517606 | 6.4:+48344600 | None:intergenic |
| GGTAAGATCGTCGCTGAGGA+AGG | 0.531836 | 6.4:+48347276 | None:intergenic |
| CGCCGGTACTGTTACTGCCG+CGG | 0.533903 | 6.4:-48347312 | MS.gene72626:CDS |
| ATTCGCTGAGATCGACGCAC+TGG | 0.540812 | 6.4:+48347347 | None:intergenic |
| GCAGGCAAAAGAAATTGTGC+GGG | 0.547067 | 6.4:-48345420 | MS.gene72626:intron |
| AGGTGCGAGAGAACAAGGAA+TGG | 0.549633 | 6.4:-48344628 | MS.gene72626:CDS |
| AGAATATGGACCTGCAAAAG+TGG | 0.553469 | 6.4:+48346081 | None:intergenic |
| CTCAAGGTTCGTTATGGTGA+AGG | 0.554372 | 6.4:-48345207 | MS.gene72626:intron |
| TCAATGAGAGGTGCATTCGC+AGG | 0.556862 | 6.4:+48346212 | None:intergenic |
| GGAGGAGGTGCGAGAGAACA+AGG | 0.559477 | 6.4:-48344633 | MS.gene72626:CDS |
| TGCAGAAAATGGGGAAGAAG+AGG | 0.565772 | 6.4:-48346270 | MS.gene72626:CDS |
| TCTTTCTGATGCAGAAATGG+AGG | 0.571930 | 6.4:-48344651 | MS.gene72626:intron |
| ACCATAACGAACCTTGAGAC+AGG | 0.572679 | 6.4:+48345212 | None:intergenic |
| AACTTTCAAAGTGTTTAAGA+CGG | 0.577444 | 6.4:+48344256 | None:intergenic |
| TGCCGCGGCAGTAACAGTAC+CGG | 0.578345 | 6.4:+48347310 | None:intergenic |
| CCACATTGCATAGAAGAGAA+AGG | 0.579806 | 6.4:-48344599 | MS.gene72626:CDS |
| AACGAAAGATGTCGCCAACT+GGG | 0.580211 | 6.4:-48344383 | MS.gene72626:CDS |
| GCGCGGCGCTGCGATAGCAA+GGG | 0.581578 | 6.4:-48346143 | MS.gene72626:CDS |
| CATAGGCCATAGCATATACA+CGG | 0.584919 | 6.4:-48344281 | MS.gene72626:intron |
| TTCTGATGCAGAAATGGAGG+AGG | 0.588072 | 6.4:-48344648 | MS.gene72626:intron |
| CGAATCAAGGATGTTTCCGC+CGG | 0.595951 | 6.4:-48347329 | MS.gene72626:CDS |
| ACGGCCCCGTGTATATGCTA+TGG | 0.597941 | 6.4:+48344275 | None:intergenic |
| TATGCCATTACGCCAAAACA+AGG | 0.600778 | 6.4:-48347233 | MS.gene72626:intron |
| TGCAGGCAAAAGAAATTGTG+CGG | 0.602252 | 6.4:-48345421 | MS.gene72626:intron |
| AAAGGTAACTGCAGAAAATG+GGG | 0.611139 | 6.4:-48346279 | MS.gene72626:CDS |
| TTCGGGTTCAGTTCAATGAG+AGG | 0.620452 | 6.4:+48346200 | None:intergenic |
| CGCGGCAGTAACAGTACCGG+CGG | 0.623331 | 6.4:+48347313 | None:intergenic |
| ATAGGCCATAGCATATACAC+GGG | 0.640948 | 6.4:-48344280 | MS.gene72626:intron |
| TCAGCGTGTCACTCAAGCAA+TGG | 0.641137 | 6.4:-48345249 | MS.gene72626:CDS |
| AATCAAATCTTACCTAAACA+AGG | 0.650664 | 6.4:+48345355 | None:intergenic |
| AAGGTCGTCGAGCATTGCCG+CGG | 0.652221 | 6.4:+48347295 | None:intergenic |
| GTGTGTATTGCAATCCCAGT+TGG | 0.660496 | 6.4:+48344369 | None:intergenic |
| TCTCATTGAACTGAACCCGA+AGG | 0.675873 | 6.4:-48346198 | MS.gene72626:CDS |
| TATGCAGCTCAATATGCATG+AGG | 0.683395 | 6.4:-48344407 | MS.gene72626:intron |
| AAACGGTAAGATCGTCGCTG+AGG | 0.683773 | 6.4:+48347272 | None:intergenic |
| CAGGCAAAAGAAATTGTGCG+GGG | 0.701866 | 6.4:-48345419 | MS.gene72626:CDS |
| ACTGGGATTGCAATACACAC+AGG | 0.706206 | 6.4:-48344366 | MS.gene72626:intron |
| TAGGCCATAGCATATACACG+GGG | 0.794222 | 6.4:-48344279 | MS.gene72626:CDS |
| TTTCAGAAGAGATTTCTGCG+CGG | 0.814056 | 6.4:-48346160 | MS.gene72626:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGATTTTATTAAATTATTAG+CGG | + | chr6.4:48344918-48344937 | None:intergenic | 10.0% |
| !! | AAAATTAAAAGAACATCTAA+TGG | + | chr6.4:48345218-48345237 | None:intergenic | 15.0% |
| !! | AATGTTTGTTTAAATCAATT+AGG | - | chr6.4:48344809-48344828 | MS.gene72626:intron | 15.0% |
| !! | ATAATAATAATGAAGAGATT+AGG | + | chr6.4:48344305-48344324 | None:intergenic | 15.0% |
| !! | CTAATCTAAATATTAACAAT+TGG | + | chr6.4:48345432-48345451 | None:intergenic | 15.0% |
| !! | TAATAATAATGAAGAGATTA+GGG | + | chr6.4:48344304-48344323 | None:intergenic | 15.0% |
| !! | TATCAATTAAGGTAATAAAA+TGG | + | chr6.4:48347415-48347434 | None:intergenic | 15.0% |
| !!! | CAATTTAGTTGATTTTTAAA+TGG | + | chr6.4:48346278-48346297 | None:intergenic | 15.0% |
| !!! | TCTATTTTTTGTTATAAAAC+TGG | - | chr6.4:48346850-48346869 | MS.gene72626:intron | 15.0% |
| !! | AATATATATTACACGATCTT+TGG | - | chr6.4:48344709-48344728 | MS.gene72626:intron | 20.0% |
| !! | AGATATATATGTGAAAATGA+AGG | - | chr6.4:48345394-48345413 | MS.gene72626:CDS | 20.0% |
| !! | TACAAAATATTGTCAAATAG+AGG | - | chr6.4:48346015-48346034 | MS.gene72626:intron | 20.0% |
| !! | TGATAACATCAATGTATATA+AGG | - | chr6.4:48346184-48346203 | MS.gene72626:CDS | 20.0% |
| !! | TTAGATTAGATATAGATTAG+AGG | - | chr6.4:48345443-48345462 | MS.gene72626:intron | 20.0% |
| !!! | ACTCTTTTAACATGTTATTT+AGG | + | chr6.4:48346324-48346343 | None:intergenic | 20.0% |
| !!! | ATGTGTATAGAATGTTTTAA+AGG | - | chr6.4:48347356-48347375 | MS.gene72626:CDS | 20.0% |
| !!! | ATTAAGTTGTTTATCCAAAT+TGG | - | chr6.4:48346918-48346937 | MS.gene72626:intron | 20.0% |
| !!! | GTTAAATAAAAACCTTGTTT+TGG | + | chr6.4:48344622-48344641 | None:intergenic | 20.0% |
| !!! | TTAAGTTGTTTATCCAAATT+GGG | - | chr6.4:48346919-48346938 | MS.gene72626:intron | 20.0% |
| ! | AAAATGTCTAAGTTAGTTAC+TGG | - | chr6.4:48345848-48345867 | MS.gene72626:intron | 25.0% |
| ! | AAATGCTATTGACAAAATTG+AGG | - | chr6.4:48346102-48346121 | MS.gene72626:CDS | 25.0% |
| ! | AAATGTCTAAGTTAGTTACT+GGG | - | chr6.4:48345849-48345868 | MS.gene72626:intron | 25.0% |
| ! | AATCAAATCTTACCTAAACA+AGG | + | chr6.4:48346488-48346507 | None:intergenic | 25.0% |
| ! | AATTTAGTGTAATCATGTGT+GGG | - | chr6.4:48344941-48344960 | MS.gene72626:intron | 25.0% |
| ! | AGACATGCTCAAATAAATAA+AGG | - | chr6.4:48346667-48346686 | MS.gene72626:intron | 25.0% |
| ! | ATAACACTGTTGTTAAATAG+TGG | - | chr6.4:48345914-48345933 | MS.gene72626:intron | 25.0% |
| ! | TAATTTAGTGTAATCATGTG+TGG | - | chr6.4:48344940-48344959 | MS.gene72626:intron | 25.0% |
| ! | TATAATGACCTAGTATTCTT+TGG | - | chr6.4:48345821-48345840 | MS.gene72626:intron | 25.0% |
| ! | TATTAAATTATTAGCGGTGA+CGG | + | chr6.4:48344912-48344931 | None:intergenic | 25.0% |
| ! | TCAAACAAAACAATCAAAAC+AGG | + | chr6.4:48347533-48347552 | None:intergenic | 25.0% |
| ! | TGATGGTATCTAAATTCAAA+AGG | + | chr6.4:48347322-48347341 | None:intergenic | 25.0% |
| ! | TTGATCTGTTTACATTGTTT+AGG | + | chr6.4:48346954-48346973 | None:intergenic | 25.0% |
| !! | AGTAACTAACTTAGACATTT+TGG | + | chr6.4:48345849-48345868 | None:intergenic | 25.0% |
| !! | CAAATAAATAAAGGCATGTT+AGG | - | chr6.4:48346676-48346695 | MS.gene72626:intron | 25.0% |
| !! | GTAACTAACTTAGACATTTT+GGG | + | chr6.4:48345848-48345867 | None:intergenic | 25.0% |
| !! | TAGCATTTTACCAAAAATAG+CGG | + | chr6.4:48346090-48346109 | None:intergenic | 25.0% |
| !!! | ATCTACTTTTGTGTAGAAAA+AGG | + | chr6.4:48345798-48345817 | None:intergenic | 25.0% |
| !!! | GTTTTGTTTGAGTTTATCAT+AGG | - | chr6.4:48347542-48347561 | MS.gene72626:intron | 25.0% |
| !!! | TAAGTTGATGAATGAATTGA+AGG | - | chr6.4:48344360-48344379 | MS.gene72626:intron | 25.0% |
| !!! | TCTACTTTTGTGTAGAAAAA+GGG | + | chr6.4:48345797-48345816 | None:intergenic | 25.0% |
| !!! | TTAAACATAACCGCTATTTT+TGG | - | chr6.4:48346077-48346096 | MS.gene72626:intron | 25.0% |
| AAAAAGATTGCAAGAGATGT+GGG | - | chr6.4:48346444-48346463 | MS.gene72626:intron | 30.0% | |
| AAAAGGTAACTGCAGAAAAT+GGG | - | chr6.4:48345560-48345579 | MS.gene72626:intron | 30.0% | |
| AATCGTAAAGAGTCTATTAC+AGG | + | chr6.4:48346214-48346233 | None:intergenic | 30.0% | |
| AATGTCTAAGTTAGTTACTG+GGG | - | chr6.4:48345850-48345869 | MS.gene72626:intron | 30.0% | |
| ACTGAATTACGTTACAGAAA+AGG | - | chr6.4:48345543-48345562 | MS.gene72626:intron | 30.0% | |
| AGAAAGGAATAAGACCTTAT+TGG | - | chr6.4:48347257-48347276 | MS.gene72626:CDS | 30.0% | |
| AGTCTCAGAAATGTTTATGT+CGG | + | chr6.4:48346725-48346744 | None:intergenic | 30.0% | |
| ATATATTCAAAGAGAGAGCA+TGG | - | chr6.4:48347069-48347088 | MS.gene72626:intron | 30.0% | |
| ATCAAATAAACGTGACATCT+AGG | + | chr6.4:48347019-48347038 | None:intergenic | 30.0% | |
| ATTGAGCTGCATATCAATTA+AGG | + | chr6.4:48347426-48347445 | None:intergenic | 30.0% | |
| CATTTATGTCTGCATATTGA+TGG | + | chr6.4:48347339-48347358 | None:intergenic | 30.0% | |
| GCAATGAAAAACATAAATGC+AGG | - | chr6.4:48346402-48346421 | MS.gene72626:intron | 30.0% | |
| TAAACTCTTAAGTCCTGTTT+GGG | + | chr6.4:48345284-48345303 | None:intergenic | 30.0% | |
| TACATTGATGTTATCAATGC+CGG | + | chr6.4:48346180-48346199 | None:intergenic | 30.0% | |
| TACCTGTTACATATCCAATA+AGG | + | chr6.4:48347274-48347293 | None:intergenic | 30.0% | |
| TTACATTGTTTAGGTGACTT+TGG | + | chr6.4:48346945-48346964 | None:intergenic | 30.0% | |
| TTATCTTTCTGATGCAGAAA+TGG | - | chr6.4:48347186-48347205 | MS.gene72626:intron | 30.0% | |
| TTGAAACTACTGATGAGAAA+AGG | - | chr6.4:48345605-48345624 | MS.gene72626:intron | 30.0% | |
| ! | AGTATCTACAATCCAGTTTT+GGG | - | chr6.4:48345727-48345746 | MS.gene72626:intron | 30.0% |
| !! | AAACATTTCTGAGACTGTTT+GGG | - | chr6.4:48346729-48346748 | MS.gene72626:intron | 30.0% |
| !! | ACAAGGTTTTTATTTAACCC+TGG | - | chr6.4:48344624-48344643 | MS.gene72626:CDS | 30.0% |
| !! | AGCTGAAACTACTTTTCAAA+CGG | + | chr6.4:48344588-48344607 | None:intergenic | 30.0% |
| !! | TAAACATTTCTGAGACTGTT+TGG | - | chr6.4:48346728-48346747 | MS.gene72626:intron | 30.0% |
| !!! | AACCTTTTTTTGTTGTTGCA+TGG | - | chr6.4:48345485-48345504 | MS.gene72626:intron | 30.0% |
| !!! | AACTGCTATTTTCTGAAATC+CGG | - | chr6.4:48346158-48346177 | MS.gene72626:CDS | 30.0% |
| !!! | ACCTTTTTTTGTTGTTGCAT+GGG | - | chr6.4:48345486-48345505 | MS.gene72626:intron | 30.0% |
| !!! | GACTAGCTTGTTTTTTCAAA+AGG | + | chr6.4:48346302-48346321 | None:intergenic | 30.0% |
| AAAGGTAACTGCAGAAAATG+GGG | - | chr6.4:48345561-48345580 | MS.gene72626:intron | 35.0% | |
| AACAACGTACACCTGTTAAA+AGG | - | chr6.4:48344455-48344474 | MS.gene72626:intron | 35.0% | |
| AAGGCTAGGTTAGAATCTTT+GGG | - | chr6.4:48344379-48344398 | MS.gene72626:CDS | 35.0% | |
| ACAACGTACACCTGTTAAAA+GGG | - | chr6.4:48344456-48344475 | MS.gene72626:intron | 35.0% | |
| ACACCTGTTAAAAGGGTTTA+TGG | - | chr6.4:48344463-48344482 | MS.gene72626:intron | 35.0% | |
| ACCAATGTGGAAAAATAGTG+TGG | + | chr6.4:48345349-48345368 | None:intergenic | 35.0% | |
| AGAAAATGCTCTACATCCTT+CGG | + | chr6.4:48345661-48345680 | None:intergenic | 35.0% | |
| ATACTAAGAAACAGGTTTGG+AGG | + | chr6.4:48345325-48345344 | None:intergenic | 35.0% | |
| ATGAAGCATAGATACAGACA+CGG | - | chr6.4:48344875-48344894 | MS.gene72626:intron | 35.0% | |
| ATGTCTAAGTTAGTTACTGG+GGG | - | chr6.4:48345851-48345870 | MS.gene72626:intron | 35.0% | |
| CTAAACTCTTAAGTCCTGTT+TGG | + | chr6.4:48345285-48345304 | None:intergenic | 35.0% | |
| CTTGAAAACTTGAACCAATG+TGG | + | chr6.4:48345362-48345381 | None:intergenic | 35.0% | |
| CTTTCTCTTCTATGCAATGT+GGG | + | chr6.4:48347243-48347262 | None:intergenic | 35.0% | |
| GAAAAAGATTGCAAGAGATG+TGG | - | chr6.4:48346443-48346462 | MS.gene72626:intron | 35.0% | |
| GAAAAGGTAACTGCAGAAAA+TGG | - | chr6.4:48345559-48345578 | MS.gene72626:intron | 35.0% | |
| GACCTTATTGGATATGTAAC+AGG | - | chr6.4:48347269-48347288 | MS.gene72626:CDS | 35.0% | |
| GATTAGCACATGCATATCAA+GGG | - | chr6.4:48344731-48344750 | MS.gene72626:intron | 35.0% | |
| TCCCATGCAACAACAAAAAA+AGG | + | chr6.4:48345490-48345509 | None:intergenic | 35.0% | |
| TGATGAATGAATTGAAGGCT+AGG | - | chr6.4:48344365-48344384 | MS.gene72626:intron | 35.0% | |
| TGTAAGCTTAAAACAGCTTG+TGG | + | chr6.4:48346792-48346811 | None:intergenic | 35.0% | |
| ! | AGACCATAAACCCTTTTAAC+AGG | + | chr6.4:48344469-48344488 | None:intergenic | 35.0% |
| ! | ATATCAAGGGTATGTTTGGT+TGG | - | chr6.4:48344744-48344763 | MS.gene72626:intron | 35.0% |
| ! | ATGCATATCAAGGGTATGTT+TGG | - | chr6.4:48344740-48344759 | MS.gene72626:intron | 35.0% |
| ! | CAGTATCTACAATCCAGTTT+TGG | - | chr6.4:48345726-48345745 | MS.gene72626:intron | 35.0% |
| ! | GATGTGAATGAACCTTGTTT+AGG | - | chr6.4:48346473-48346492 | MS.gene72626:intron | 35.0% |
| ! | GTATCTACAATCCAGTTTTG+GGG | - | chr6.4:48345728-48345747 | MS.gene72626:intron | 35.0% |
| ! | TTGTTACACGATACGCTTTT+TGG | - | chr6.4:48345992-48346011 | MS.gene72626:intron | 35.0% |
| !! | GTACGTTGTTGTTTCTTAGT+TGG | + | chr6.4:48344445-48344464 | None:intergenic | 35.0% |
| !! | TGTTTTTCTGTGAGTTCTGA+TGG | - | chr6.4:48345517-48345536 | MS.gene72626:intron | 35.0% |
| !!! | AAAACCTTGTTTTGGCGTAA+TGG | + | chr6.4:48344614-48344633 | None:intergenic | 35.0% |
| !!! | CACATTGGTTCAAGTTTTCA+AGG | - | chr6.4:48345360-48345379 | MS.gene72626:intron | 35.0% |
| !!! | TTTTGGGACCAAAGAATACT+AGG | + | chr6.4:48345832-48345851 | None:intergenic | 35.0% |
| AAACAGAGACGAGAAAACCA+GGG | + | chr6.4:48344644-48344663 | None:intergenic | 40.0% | |
| AGAATATGGACCTGCAAAAG+TGG | + | chr6.4:48345762-48345781 | None:intergenic | 40.0% | |
| AGTGTGGCATACTAAGAAAC+AGG | + | chr6.4:48345333-48345352 | None:intergenic | 40.0% | |
| ATAGGCCATAGCATATACAC+GGG | - | chr6.4:48347560-48347579 | MS.gene72626:intron | 40.0% | |
| CATAGGCCATAGCATATACA+CGG | - | chr6.4:48347559-48347578 | MS.gene72626:intron | 40.0% | |
| CCACATTGCATAGAAGAGAA+AGG | - | chr6.4:48347241-48347260 | MS.gene72626:CDS | 40.0% | |
| CCTTTCTCTTCTATGCAATG+TGG | + | chr6.4:48347244-48347263 | None:intergenic | 40.0% | |
| GAAAATGCTCTACATCCTTC+GGG | + | chr6.4:48345660-48345679 | None:intergenic | 40.0% | |
| GAAGGCTAGGTTAGAATCTT+TGG | - | chr6.4:48344378-48344397 | MS.gene72626:CDS | 40.0% | |
| GGCATACTAAGAAACAGGTT+TGG | + | chr6.4:48345328-48345347 | None:intergenic | 40.0% | |
| GGTAAGAGAGCAAGAGAATA+TGG | + | chr6.4:48345776-48345795 | None:intergenic | 40.0% | |
| GTCAAATAGAGGCTATAGCA+GGG | - | chr6.4:48346026-48346045 | MS.gene72626:intron | 40.0% | |
| TATGCAGCTCAATATGCATG+AGG | - | chr6.4:48347433-48347452 | MS.gene72626:CDS | 40.0% | |
| TATGCCATTACGCCAAAACA+AGG | - | chr6.4:48344607-48344626 | MS.gene72626:CDS | 40.0% | |
| TCTCTGATCTAACAGATTCG+CGG | - | chr6.4:48346540-48346559 | MS.gene72626:intron | 40.0% | |
| TCTTTCTGATGCAGAAATGG+AGG | - | chr6.4:48347189-48347208 | MS.gene72626:intron | 40.0% | |
| TGCAGGCAAAAGAAATTGTG+CGG | - | chr6.4:48346419-48346438 | MS.gene72626:intron | 40.0% | |
| TGCGTGTGTATGTATGTATG+TGG | - | chr6.4:48346361-48346380 | MS.gene72626:intron | 40.0% | |
| TGTCAAATAGAGGCTATAGC+AGG | - | chr6.4:48346025-48346044 | MS.gene72626:intron | 40.0% | |
| TTTCAGAAGAGATTTCTGCG+CGG | - | chr6.4:48345680-48345699 | MS.gene72626:intron | 40.0% | |
| ! | GGATTAGCACATGCATATCA+AGG | - | chr6.4:48344730-48344749 | MS.gene72626:intron | 40.0% |
| !! | GCCACACTATTTTTCCACAT+TGG | - | chr6.4:48345345-48345364 | MS.gene72626:intron | 40.0% |
| !! | GTAATCACAAGTATCGACGT+CGG | + | chr6.4:48345118-48345137 | None:intergenic | 40.0% |
| !!! | TTTGGTTGGAGGGTTTTGTT+GGG | - | chr6.4:48344758-48344777 | MS.gene72626:intron | 40.0% |
| AAACGAAAGATGTCGCCAAC+TGG | - | chr6.4:48347456-48347475 | MS.gene72626:CDS | 45.0% | |
| AACGAAAGATGTCGCCAACT+GGG | - | chr6.4:48347457-48347476 | MS.gene72626:CDS | 45.0% | |
| ACCATAACGAACCTTGAGAC+AGG | + | chr6.4:48346631-48346650 | None:intergenic | 45.0% | |
| ACTGGGATTGCAATACACAC+AGG | - | chr6.4:48347474-48347493 | MS.gene72626:intron | 45.0% | |
| AGTTAGTTACTGGGGGTAGA+AGG | - | chr6.4:48345858-48345877 | MS.gene72626:intron | 45.0% | |
| ATTCGCGGCATATTCGTAAC+AGG | - | chr6.4:48346555-48346574 | MS.gene72626:intron | 45.0% | |
| CAAACAGAGACGAGAAAACC+AGG | + | chr6.4:48344645-48344664 | None:intergenic | 45.0% | |
| CAGGCAAAAGAAATTGTGCG+GGG | - | chr6.4:48346421-48346440 | MS.gene72626:intron | 45.0% | |
| CTCAAGGTTCGTTATGGTGA+AGG | - | chr6.4:48346633-48346652 | MS.gene72626:intron | 45.0% | |
| GCACAGACACTTCTGATTGA+AGG | - | chr6.4:48345063-48345082 | MS.gene72626:intron | 45.0% | |
| GCAGGCAAAAGAAATTGTGC+GGG | - | chr6.4:48346420-48346439 | MS.gene72626:intron | 45.0% | |
| GTGTGTATTGCAATCCCAGT+TGG | + | chr6.4:48347474-48347493 | None:intergenic | 45.0% | |
| TAGGCCATAGCATATACACG+GGG | - | chr6.4:48347561-48347580 | MS.gene72626:intron | 45.0% | |
| TAGGTGACTTTGGCCCAATT+TGG | + | chr6.4:48346935-48346954 | None:intergenic | 45.0% | |
| TCCAAAACCTCAACCCAAAC+AGG | - | chr6.4:48345268-48345287 | MS.gene72626:intron | 45.0% | |
| TCTCATTGAACTGAACCCGA+AGG | - | chr6.4:48345642-48345661 | MS.gene72626:intron | 45.0% | |
| TGCAGAAAATGGGGAAGAAG+AGG | - | chr6.4:48345570-48345589 | MS.gene72626:intron | 45.0% | |
| TTCTGATGCAGAAATGGAGG+AGG | - | chr6.4:48347192-48347211 | MS.gene72626:intron | 45.0% | |
| ! | CAAGGGTATGTTTGGTTGGA+GGG | - | chr6.4:48344748-48344767 | MS.gene72626:intron | 45.0% |
| ! | TCAAGGGTATGTTTGGTTGG+AGG | - | chr6.4:48344747-48344766 | MS.gene72626:intron | 45.0% |
| ! | TTCGGGTTCAGTTCAATGAG+AGG | + | chr6.4:48345643-48345662 | None:intergenic | 45.0% |
| ! | TTTTTGTCGAGCCTGTCTCA+AGG | - | chr6.4:48346617-48346636 | MS.gene72626:intron | 45.0% |
| !! | CTTAAGTCCTGTTTGGGTTG+AGG | + | chr6.4:48345278-48345297 | None:intergenic | 45.0% |
| !! | GTTTGGTTGGAGGGTTTTGT+TGG | - | chr6.4:48344757-48344776 | MS.gene72626:intron | 45.0% |
| !!! | GTTTGGGTTGAGGTTTTGGA+GGG | + | chr6.4:48345268-48345287 | None:intergenic | 45.0% |
| !!! | TCCTGTTTGGGTTGAGGTTT+TGG | + | chr6.4:48345272-48345291 | None:intergenic | 45.0% |
| !!! | TGTTTGGGTTGAGGTTTTGG+AGG | + | chr6.4:48345269-48345288 | None:intergenic | 45.0% |
| !!! | TTGGTTGGAGGGTTTTGTTG+GGG | - | chr6.4:48344759-48344778 | MS.gene72626:intron | 45.0% |
| AAACGGTAAGATCGTCGCTG+AGG | + | chr6.4:48344571-48344590 | None:intergenic | 50.0% | |
| ACACGACATGTGTCGGACAT+CGG | + | chr6.4:48345095-48345114 | None:intergenic | 50.0% | |
| AGACTGTTTGGGAGAGCTTG+TGG | - | chr6.4:48346740-48346759 | MS.gene72626:intron | 50.0% | |
| AGGTGCGAGAGAACAAGGAA+TGG | - | chr6.4:48347212-48347231 | MS.gene72626:intron | 50.0% | |
| ATCGACATGTGTCTGACACC+GGG | - | chr6.4:48344983-48345002 | MS.gene72626:intron | 50.0% | |
| CACATGTCGATGTCCGACAT+CGG | + | chr6.4:48344974-48344993 | None:intergenic | 50.0% | |
| CATCGACATGTGTCTGACAC+CGG | - | chr6.4:48344982-48345001 | MS.gene72626:intron | 50.0% | |
| CGAATCAAGGATGTTTCCGC+CGG | - | chr6.4:48344511-48344530 | MS.gene72626:intron | 50.0% | |
| GCCTGTCTCAAGGTTCGTTA+TGG | - | chr6.4:48346627-48346646 | MS.gene72626:intron | 50.0% | |
| TGGCAGCATATCCCCAAAAC+TGG | + | chr6.4:48345742-48345761 | None:intergenic | 50.0% | |
| ! | TCAATGAGAGGTGCATTCGC+AGG | + | chr6.4:48345631-48345650 | None:intergenic | 50.0% |
| ! | TCAGCGTGTCACTCAAGCAA+TGG | - | chr6.4:48346591-48346610 | MS.gene72626:intron | 50.0% |
| !!! | GGATATGCTGCCACTTTTGC+AGG | - | chr6.4:48345749-48345768 | MS.gene72626:intron | 50.0% |
| !!! | TGGAGGGTTTTGTTGGGGAA+GGG | - | chr6.4:48344764-48344783 | MS.gene72626:intron | 50.0% |
| !!! | TTGGAGGGTTTTGTTGGGGA+AGG | - | chr6.4:48344763-48344782 | MS.gene72626:intron | 50.0% |
| ACGGCCCCGTGTATATGCTA+TGG | + | chr6.4:48347568-48347587 | None:intergenic | 55.0% | |
| ACGTCGGACACGACATGTGT+CGG | + | chr6.4:48345102-48345121 | None:intergenic | 55.0% | |
| ATTCGCTGAGATCGACGCAC+TGG | + | chr6.4:48344496-48344515 | None:intergenic | 55.0% | |
| CACGACATGTGTCGGACATC+GGG | + | chr6.4:48345094-48345113 | None:intergenic | 55.0% | |
| GACGAAGCACAGACACTCCT+CGG | + | chr6.4:48345020-48345039 | None:intergenic | 55.0% | |
| GCACAGACACTCCTCGGATT+AGG | + | chr6.4:48345014-48345033 | None:intergenic | 55.0% | |
| GGTAAGATCGTCGCTGAGGA+AGG | + | chr6.4:48344567-48344586 | None:intergenic | 55.0% | |
| ! | GCGTCGATCTCAGCGAATCA+AGG | - | chr6.4:48344498-48344517 | MS.gene72626:intron | 55.0% |
| !!! | AGGGTTTTGTTGGGGAAGGG+AGG | - | chr6.4:48344767-48344786 | MS.gene72626:intron | 55.0% |
| !!! | GGGTTTTGTTGGGGAAGGGA+GGG | - | chr6.4:48344768-48344787 | MS.gene72626:intron | 55.0% |
| CGCTGCGATAGCAAGGGTAG+AGG | - | chr6.4:48345703-48345722 | MS.gene72626:intron | 60.0% | |
| TGCCGCGGCAGTAACAGTAC+CGG | + | chr6.4:48344533-48344552 | None:intergenic | 60.0% | |
| ! | AAGGTCGTCGAGCATTGCCG+CGG | + | chr6.4:48344548-48344567 | None:intergenic | 60.0% |
| ! | GGAGGAGGTGCGAGAGAACA+AGG | - | chr6.4:48347207-48347226 | MS.gene72626:intron | 60.0% |
| ! | TCCTCGGATTAGGCGTGTCC+CGG | + | chr6.4:48345004-48345023 | None:intergenic | 60.0% |
| ! | TGTGGGTGTCGTGCCGATGT+CGG | - | chr6.4:48344958-48344977 | MS.gene72626:intron | 60.0% |
| ACCGGGACACGCCTAATCCG+AGG | - | chr6.4:48345000-48345019 | MS.gene72626:intron | 65.0% | |
| CGCCGGTACTGTTACTGCCG+CGG | - | chr6.4:48344528-48344547 | MS.gene72626:intron | 65.0% | |
| ! | CGCGGCAGTAACAGTACCGG+CGG | + | chr6.4:48344530-48344549 | None:intergenic | 65.0% |
| GCGCGGCGCTGCGATAGCAA+GGG | - | chr6.4:48345697-48345716 | MS.gene72626:intron | 70.0% | |
| TGCGCGGCGCTGCGATAGCA+AGG | - | chr6.4:48345696-48345715 | MS.gene72626:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.4 | gene | 48344270 | 48347592 | 48344270 | ID=MS.gene72626 |
| chr6.4 | mRNA | 48344270 | 48347592 | 48344270 | ID=MS.gene72626.t1;Parent=MS.gene72626 |
| chr6.4 | exon | 48347578 | 48347592 | 48347578 | ID=MS.gene72626.t1.exon1;Parent=MS.gene72626.t1 |
| chr6.4 | CDS | 48347578 | 48347592 | 48347578 | ID=cds.MS.gene72626.t1;Parent=MS.gene72626.t1 |
| chr6.4 | exon | 48347234 | 48347480 | 48347234 | ID=MS.gene72626.t1.exon2;Parent=MS.gene72626.t1 |
| chr6.4 | CDS | 48347234 | 48347480 | 48347234 | ID=cds.MS.gene72626.t1;Parent=MS.gene72626.t1 |
| chr6.4 | exon | 48346092 | 48346302 | 48346092 | ID=MS.gene72626.t1.exon3;Parent=MS.gene72626.t1 |
| chr6.4 | CDS | 48346092 | 48346302 | 48346092 | ID=cds.MS.gene72626.t1;Parent=MS.gene72626.t1 |
| chr6.4 | exon | 48345368 | 48345438 | 48345368 | ID=MS.gene72626.t1.exon4;Parent=MS.gene72626.t1 |
| chr6.4 | CDS | 48345368 | 48345438 | 48345368 | ID=cds.MS.gene72626.t1;Parent=MS.gene72626.t1 |
| chr6.4 | exon | 48345208 | 48345285 | 48345208 | ID=MS.gene72626.t1.exon5;Parent=MS.gene72626.t1 |
| chr6.4 | CDS | 48345208 | 48345285 | 48345208 | ID=cds.MS.gene72626.t1;Parent=MS.gene72626.t1 |
| chr6.4 | exon | 48344572 | 48344659 | 48344572 | ID=MS.gene72626.t1.exon6;Parent=MS.gene72626.t1 |
| chr6.4 | CDS | 48344572 | 48344659 | 48344572 | ID=cds.MS.gene72626.t1;Parent=MS.gene72626.t1 |
| chr6.4 | exon | 48344367 | 48344422 | 48344367 | ID=MS.gene72626.t1.exon7;Parent=MS.gene72626.t1 |
| chr6.4 | CDS | 48344367 | 48344422 | 48344367 | ID=cds.MS.gene72626.t1;Parent=MS.gene72626.t1 |
| chr6.4 | exon | 48344270 | 48344298 | 48344270 | ID=MS.gene72626.t1.exon8;Parent=MS.gene72626.t1 |
| chr6.4 | CDS | 48344270 | 48344298 | 48344270 | ID=cds.MS.gene72626.t1;Parent=MS.gene72626.t1 |
| Gene Sequence |
| Protein sequence |
