Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73512.t1 | XP_003605789.2 | 97 | 367 | 11 | 0 | 1 | 367 | 4 | 370 | 4.60E-209 | 736.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73512.t1 | G7JTL9 | 97.0 | 367 | 11 | 0 | 1 | 367 | 1 | 367 | 3.3e-209 | 736.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04932 | MS.gene73512 | 0.824891 | 6.31E-54 | -1.69E-46 |
| MS.gene050710 | MS.gene73512 | 0.814645 | 1.39E-51 | -1.69E-46 |
| MS.gene050720 | MS.gene73512 | 0.810961 | 8.89E-51 | -1.69E-46 |
| MS.gene051439 | MS.gene73512 | 0.803038 | 4.22E-49 | -1.69E-46 |
| MS.gene051552 | MS.gene73512 | 0.814935 | 1.20E-51 | -1.69E-46 |
| MS.gene051996 | MS.gene73512 | 0.84317 | 1.65E-58 | -1.69E-46 |
| MS.gene052223 | MS.gene73512 | 0.810219 | 1.29E-50 | -1.69E-46 |
| MS.gene052606 | MS.gene73512 | 0.80308 | 4.13E-49 | -1.69E-46 |
| MS.gene054742 | MS.gene73512 | 0.838781 | 2.35E-57 | -1.69E-46 |
| MS.gene056330 | MS.gene73512 | 0.836976 | 6.83E-57 | -1.69E-46 |
| MS.gene056680 | MS.gene73512 | 0.828985 | 6.63E-55 | -1.69E-46 |
| MS.gene056688 | MS.gene73512 | 0.808187 | 3.50E-50 | -1.69E-46 |
| MS.gene056920 | MS.gene73512 | 0.808988 | 2.36E-50 | -1.69E-46 |
| MS.gene058418 | MS.gene73512 | 0.820246 | 7.59E-53 | -1.69E-46 |
| MS.gene059328 | MS.gene73512 | 0.801081 | 1.07E-48 | -1.69E-46 |
| MS.gene059891 | MS.gene73512 | 0.82328 | 1.51E-53 | -1.69E-46 |
| MS.gene059892 | MS.gene73512 | 0.813992 | 1.93E-51 | -1.69E-46 |
| MS.gene060087 | MS.gene73512 | 0.825471 | 4.60E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene51556 | MS.gene73512 | PPI |
| MS.gene015971 | MS.gene73512 | PPI |
| MS.gene60267 | MS.gene73512 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73512.t1 | MTR_4g039680 | 97.003 | 367 | 11 | 0 | 1 | 367 | 1 | 367 | 0.0 | 735 |
| MS.gene73512.t1 | MTR_4g039720 | 89.256 | 363 | 39 | 0 | 5 | 367 | 9 | 371 | 0.0 | 684 |
| MS.gene73512.t1 | MTR_4g039740 | 88.283 | 367 | 43 | 0 | 1 | 367 | 1 | 367 | 0.0 | 684 |
| MS.gene73512.t1 | MTR_0045s0110 | 80.654 | 367 | 71 | 0 | 1 | 367 | 1 | 367 | 0.0 | 610 |
| MS.gene73512.t1 | MTR_1g011800 | 54.242 | 330 | 149 | 2 | 34 | 361 | 39 | 368 | 4.90e-130 | 377 |
| MS.gene73512.t1 | MTR_2g103170 | 48.503 | 334 | 166 | 2 | 34 | 361 | 28 | 361 | 8.54e-112 | 331 |
| MS.gene73512.t1 | MTR_2g019600 | 43.202 | 331 | 187 | 1 | 34 | 363 | 35 | 365 | 1.28e-95 | 290 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73512.t1 | AT3G08030 | 67.941 | 340 | 108 | 1 | 29 | 367 | 26 | 365 | 8.46e-175 | 491 |
| MS.gene73512.t1 | AT3G08030 | 68.731 | 323 | 100 | 1 | 46 | 367 | 1 | 323 | 2.73e-168 | 473 |
| MS.gene73512.t1 | AT2G41800 | 60.542 | 332 | 130 | 1 | 34 | 364 | 36 | 367 | 9.53e-150 | 427 |
| MS.gene73512.t1 | AT2G41810 | 58.056 | 360 | 144 | 3 | 11 | 363 | 7 | 366 | 1.96e-149 | 426 |
| MS.gene73512.t1 | AT5G25460 | 53.719 | 363 | 164 | 3 | 1 | 361 | 1 | 361 | 2.69e-136 | 393 |
| MS.gene73512.t1 | AT5G11420 | 56.231 | 329 | 143 | 1 | 34 | 361 | 30 | 358 | 1.71e-135 | 391 |
| MS.gene73512.t1 | AT4G32460 | 54.711 | 329 | 148 | 1 | 34 | 361 | 29 | 357 | 3.62e-132 | 382 |
| MS.gene73512.t1 | AT4G32460 | 54.711 | 329 | 148 | 1 | 34 | 361 | 29 | 357 | 3.62e-132 | 382 |
| MS.gene73512.t1 | AT4G32460 | 55.205 | 317 | 141 | 1 | 46 | 361 | 1 | 317 | 4.34e-130 | 375 |
| MS.gene73512.t1 | AT4G32460 | 55.205 | 317 | 141 | 1 | 46 | 361 | 1 | 317 | 4.34e-130 | 375 |
| MS.gene73512.t1 | AT1G80240 | 51.064 | 329 | 160 | 1 | 34 | 361 | 32 | 360 | 3.47e-115 | 339 |
| MS.gene73512.t1 | AT1G29980 | 42.059 | 340 | 187 | 2 | 34 | 363 | 7 | 346 | 1.93e-95 | 289 |
| MS.gene73512.t1 | AT1G29980 | 42.059 | 340 | 187 | 2 | 34 | 363 | 43 | 382 | 4.03e-95 | 290 |
| MS.gene73512.t1 | AT2G34510 | 42.262 | 336 | 188 | 2 | 34 | 363 | 43 | 378 | 2.52e-93 | 285 |
| MS.gene73512.t1 | AT2G34510 | 43.493 | 292 | 159 | 2 | 78 | 363 | 1 | 292 | 1.73e-83 | 256 |
| MS.gene73512.t1 | AT5G14150 | 26.842 | 380 | 231 | 13 | 9 | 367 | 8 | 361 | 3.32e-30 | 119 |
| MS.gene73512.t1 | AT5G14150 | 26.842 | 380 | 231 | 13 | 9 | 367 | 8 | 361 | 3.32e-30 | 119 |
Find 108 sgRNAs with CRISPR-Local
Find 159 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATACAAGGATTGATGATTT+TGG | 0.100468 | 4.4:-64482577 | MS.gene73512:CDS |
| CCATTTGTTGTGTTGAAAAT+AGG | 0.118027 | 4.4:+64482982 | None:intergenic |
| CTTTGAATCAATGAATTTAA+TGG | 0.135571 | 4.4:+64482888 | None:intergenic |
| GCCTATATTTGCAGATAATT+TGG | 0.140639 | 4.4:-64483037 | MS.gene73512:intron |
| CTTAAAGTTTACTTTCAAAA+TGG | 0.183066 | 4.4:-64484208 | MS.gene73512:intron |
| CTTGTTTCCTTTATGAATCT+TGG | 0.194424 | 4.4:+64484163 | None:intergenic |
| CCCTACTTGTGGTCCACTTT+TGG | 0.234226 | 4.4:-64483774 | MS.gene73512:CDS |
| TTCATATTGTAGACTTTGTT+TGG | 0.283032 | 4.4:+64482781 | None:intergenic |
| CATTTGTTGTGTTGAAAATA+GGG | 0.295242 | 4.4:+64482983 | None:intergenic |
| TCCTTTATGAATCTTGGGTT+TGG | 0.305420 | 4.4:+64484169 | None:intergenic |
| CTTCTTGAACACCAGGGTTA+TGG | 0.308939 | 4.4:+64483798 | None:intergenic |
| CAATGGTATGCTCTAATATT+AGG | 0.315217 | 4.4:-64483971 | MS.gene73512:CDS |
| CAGGTTTGACCTTGATGGTT+TGG | 0.315262 | 4.4:+64483996 | None:intergenic |
| AAAGTTCCTTTCAAATCTTT+AGG | 0.319577 | 4.4:-64482682 | MS.gene73512:CDS |
| TAGACCATTGATTTCCCATT+TGG | 0.321175 | 4.4:+64484117 | None:intergenic |
| TTGTTTCCTTTATGAATCTT+GGG | 0.332661 | 4.4:+64484164 | None:intergenic |
| AATGAATTTAATGGCTTTGA+GGG | 0.333087 | 4.4:+64482897 | None:intergenic |
| CTCTAATATTAGGAGCTTCT+AGG | 0.347807 | 4.4:-64483961 | MS.gene73512:CDS |
| CAATGGTGATGTTATTGCTT+GGG | 0.353561 | 4.4:-64483858 | MS.gene73512:CDS |
| AAGAATTTCCAAGTGCCATT+TGG | 0.355884 | 4.4:-64482868 | MS.gene73512:CDS |
| AGGTTTGACCTTGATGGTTT+GGG | 0.356574 | 4.4:+64483997 | None:intergenic |
| TTGACCAGGTTTGACCTTGA+TGG | 0.371778 | 4.4:+64483991 | None:intergenic |
| GACACAAGATCTTGTTGCTT+TGG | 0.386124 | 4.4:+64482946 | None:intergenic |
| TTCCAAGTGCCATTTGGAAA+TGG | 0.398171 | 4.4:-64482862 | MS.gene73512:CDS |
| TTGTGTCACCACTCCCTGGC+TGG | 0.399232 | 4.4:-64482930 | MS.gene73512:CDS |
| TTAAAGTTTACTTTCAAAAT+GGG | 0.399296 | 4.4:-64484207 | MS.gene73512:intron |
| CAAACACTTTATAGCCTCAA+TGG | 0.405480 | 4.4:-64483875 | MS.gene73512:CDS |
| GGAGCAGTGGAGCTTGTTGC+AGG | 0.407672 | 4.4:-64482841 | MS.gene73512:CDS |
| TGTTATTGCTTGGGGATTCA+AGG | 0.409886 | 4.4:-64483849 | MS.gene73512:CDS |
| CAATGAATTTAATGGCTTTG+AGG | 0.411192 | 4.4:+64482896 | None:intergenic |
| CTCCATTTCCAAATGGCACT+TGG | 0.418379 | 4.4:+64482860 | None:intergenic |
| ATCTCAGTGCCTCCACAATC+TGG | 0.419190 | 4.4:-64483911 | MS.gene73512:CDS |
| GCCAAACCCAAGATTCATAA+AGG | 0.423787 | 4.4:-64484170 | MS.gene73512:CDS |
| ACAATTGGAGATGGAAGAAA+TGG | 0.425275 | 4.4:-64482754 | MS.gene73512:CDS |
| ATAAAGGAAACAAGACTCAT+TGG | 0.425904 | 4.4:-64484154 | MS.gene73512:CDS |
| TACAATATGAAATTCACAAT+TGG | 0.427534 | 4.4:-64482769 | MS.gene73512:CDS |
| GACCTTGATGGTTTGGGAGA+TGG | 0.428706 | 4.4:+64484003 | None:intergenic |
| AGACCATTGATTTCCCATTT+GGG | 0.443676 | 4.4:+64484118 | None:intergenic |
| ACATTTACCTTCTGGTGACC+TGG | 0.448507 | 4.4:+64484853 | None:intergenic |
| GGAAACATGCTCTTCCCAAA+TGG | 0.452234 | 4.4:-64484132 | MS.gene73512:CDS |
| ACAAGATCTTGTTGCTTTGG+AGG | 0.453040 | 4.4:+64482949 | None:intergenic |
| CCTTTCAAATCTTTAGGAAA+GGG | 0.458801 | 4.4:-64482676 | MS.gene73512:CDS |
| AAGAACATGCCTCCAGGTTG+TGG | 0.465220 | 4.4:+64484073 | None:intergenic |
| AGAAGGAGAGTCTAAGCAAC+AGG | 0.470064 | 4.4:+64482514 | None:intergenic |
| TTACCTCTTGTCGGCATCGG+AGG | 0.472016 | 4.4:+64483725 | None:intergenic |
| GAAACATGCTCTTCCCAAAT+GGG | 0.472359 | 4.4:-64484131 | MS.gene73512:CDS |
| GCATGAACTCCATGCGACAC+TGG | 0.480181 | 4.4:+64484049 | None:intergenic |
| TCATTACCTCTTGTCGGCAT+CGG | 0.480847 | 4.4:+64483722 | None:intergenic |
| ATCTCTGGAGGGCCACAACC+TGG | 0.481932 | 4.4:-64484085 | MS.gene73512:CDS |
| CATGGTTCATTACCTCTTGT+CGG | 0.488660 | 4.4:+64483716 | None:intergenic |
| GGTCTAGTAGAATATATCTC+TGG | 0.497686 | 4.4:-64484100 | MS.gene73512:CDS |
| TAAAGGAAACAAGACTCATT+GGG | 0.502085 | 4.4:-64484153 | MS.gene73512:CDS |
| ATGAAATTCACAATTGGAGA+TGG | 0.505665 | 4.4:-64482763 | MS.gene73512:CDS |
| AATGGACCCTCTTCAAAGCC+AGG | 0.508731 | 4.4:+64483006 | None:intergenic |
| TCCTTTCAAATCTTTAGGAA+AGG | 0.509600 | 4.4:-64482677 | MS.gene73512:CDS |
| CATGAACTCCATGCGACACT+GGG | 0.512565 | 4.4:+64484050 | None:intergenic |
| AGTGGAGCTTGTTGCAGGTA+GGG | 0.513407 | 4.4:-64482836 | MS.gene73512:CDS |
| TCCACTGCTCCATTTCCAAA+TGG | 0.515434 | 4.4:+64482853 | None:intergenic |
| AAGAAACCCTGGCTTTGAAG+AGG | 0.516304 | 4.4:-64483013 | MS.gene73512:CDS |
| CAAACCATCAAGGTCAAACC+TGG | 0.519771 | 4.4:-64483995 | MS.gene73512:CDS |
| GGAGTTCATGCAGTTAGACT+TGG | 0.520919 | 4.4:-64484037 | MS.gene73512:CDS |
| TCAATAATCCAGCCAGGGAG+TGG | 0.521095 | 4.4:+64482922 | None:intergenic |
| AGGGATTCAATAATCCAGCC+AGG | 0.524844 | 4.4:+64482916 | None:intergenic |
| CTTCCCAAATGGGAAATCAA+TGG | 0.525918 | 4.4:-64484121 | MS.gene73512:CDS |
| ATAGCTCTTTCTATCATACA+AGG | 0.527718 | 4.4:-64482591 | MS.gene73512:CDS |
| GATAATTTGGTAAGAAACCC+TGG | 0.527834 | 4.4:-64483024 | MS.gene73512:CDS |
| TCAAGGTCAAACCTGGTCAA+TGG | 0.528995 | 4.4:-64483988 | MS.gene73512:CDS |
| CATTTACCTTCTGGTGACCT+GGG | 0.532332 | 4.4:+64484854 | None:intergenic |
| CCCTTTCCTAAAGATTTGAA+AGG | 0.532370 | 4.4:+64482676 | None:intergenic |
| AATGGTGATGTTATTGCTTG+GGG | 0.532837 | 4.4:-64483857 | MS.gene73512:CDS |
| GATCTTGTGTCACCACTCCC+TGG | 0.543570 | 4.4:-64482934 | MS.gene73512:CDS |
| GTAGGGTCTTCTTGAACACC+AGG | 0.544065 | 4.4:+64483791 | None:intergenic |
| ACTATAACTTGATCAAGGAC+AGG | 0.546115 | 4.4:+64482541 | None:intergenic |
| TACCTCTTGTCGGCATCGGA+GGG | 0.555604 | 4.4:+64483726 | None:intergenic |
| GTTGTGTTGAAAATAGGGAA+TGG | 0.558649 | 4.4:+64482988 | None:intergenic |
| CTCCATCTCCCAAACCATCA+AGG | 0.560309 | 4.4:-64484005 | MS.gene73512:CDS |
| ATAGCAACAGCATCCAAAAG+TGG | 0.564034 | 4.4:+64483761 | None:intergenic |
| ACTGGGAAGAACATGCCTCC+AGG | 0.567603 | 4.4:+64484067 | None:intergenic |
| GTGATACTATAACTTGATCA+AGG | 0.568071 | 4.4:+64482536 | None:intergenic |
| AGGAAAGGGAACATTCAAAA+CGG | 0.577711 | 4.4:-64482662 | MS.gene73512:CDS |
| CCAAAAGTGGACCACAAGTA+GGG | 0.578033 | 4.4:+64483774 | None:intergenic |
| ATTAGAGCATACCATTGACC+AGG | 0.578535 | 4.4:+64483977 | None:intergenic |
| TCAATGGTGATGTTATTGCT+TGG | 0.581184 | 4.4:-64483859 | MS.gene73512:CDS |
| TACCCTCCGATGCCGACAAG+AGG | 0.581876 | 4.4:-64483728 | MS.gene73512:intron |
| CTAGTAGAATATATCTCTGG+AGG | 0.586760 | 4.4:-64484097 | MS.gene73512:CDS |
| TGTTCTTAGAATTTGTGCAA+TGG | 0.591903 | 4.4:+64482807 | None:intergenic |
| GATGGAAGAAATGGTTGTCA+TGG | 0.592806 | 4.4:-64482745 | MS.gene73512:CDS |
| CAGTGGAGCTTGTTGCAGGT+AGG | 0.597409 | 4.4:-64482837 | MS.gene73512:CDS |
| AGGCTATAAAGTGTTTGCAA+AGG | 0.598543 | 4.4:+64483881 | None:intergenic |
| ATGTTCTTCCCAGTGTCGCA+TGG | 0.600308 | 4.4:-64484058 | MS.gene73512:CDS |
| CTTGATGGTTTGGGAGATGG+AGG | 0.600334 | 4.4:+64484006 | None:intergenic |
| ATGGACCCTCTTCAAAGCCA+GGG | 0.606005 | 4.4:+64483007 | None:intergenic |
| AGAAACCCTGGCTTTGAAGA+GGG | 0.606940 | 4.4:-64483012 | MS.gene73512:CDS |
| TCCAAAAGTGGACCACAAGT+AGG | 0.607049 | 4.4:+64483773 | None:intergenic |
| GCCATTTGGAAATGGAGCAG+TGG | 0.618905 | 4.4:-64482854 | MS.gene73512:CDS |
| AAGCAATAACATCACCATTG+AGG | 0.621145 | 4.4:+64483861 | None:intergenic |
| CATTCGCTAATGTTCATCCC+AGG | 0.632089 | 4.4:-64484871 | MS.gene73512:CDS |
| AAAGGAACATCACCAGATTG+TGG | 0.644013 | 4.4:+64483899 | None:intergenic |
| AAAGTTACATTCCATAACCC+TGG | 0.644128 | 4.4:-64483809 | MS.gene73512:CDS |
| CTATAACTTGATCAAGGACA+GGG | 0.647070 | 4.4:+64482542 | None:intergenic |
| GTTCATCCCAGGTCACCAGA+AGG | 0.652959 | 4.4:-64484860 | MS.gene73512:intron |
| GTTCAAGAAGACCCTACTTG+TGG | 0.656462 | 4.4:-64483785 | MS.gene73512:CDS |
| GGGATTCAATAATCCAGCCA+GGG | 0.660484 | 4.4:+64482917 | None:intergenic |
| TAGTAGAATATATCTCTGGA+GGG | 0.660581 | 4.4:-64484096 | MS.gene73512:CDS |
| TGGTTGTCATGGATCAATGA+CGG | 0.699037 | 4.4:-64482734 | MS.gene73512:CDS |
| TCTGGAGGGCCACAACCTGG+AGG | 0.701197 | 4.4:-64484082 | MS.gene73512:CDS |
| GGAACATCACCAGATTGTGG+AGG | 0.701281 | 4.4:+64483902 | None:intergenic |
| TAGGGTCTTCTTGAACACCA+GGG | 0.712676 | 4.4:+64483792 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATATAATATTTCATGTAG+AGG | + | chr4.4:64483915-64483934 | None:intergenic | 15.0% |
| !! | AGTGATAAGTAAAAAAAAAT+TGG | + | chr4.4:64484071-64484090 | None:intergenic | 15.0% |
| !! | ATAAGTAAAAAAAAATTGGA+GGG | + | chr4.4:64484067-64484086 | None:intergenic | 15.0% |
| !! | TTAAAGTTTACTTTCAAAAT+GGG | - | chr4.4:64483244-64483263 | MS.gene73512:intron | 15.0% |
| !!! | ATTAACCTATTTACTTTTTT+TGG | - | chr4.4:64484323-64484342 | MS.gene73512:intron | 15.0% |
| !!! | ATTTTGAAAGTAAACTTTAA+GGG | + | chr4.4:64483244-64483263 | None:intergenic | 15.0% |
| !!! | CTTAATTACCTTTTTATATA+AGG | - | chr4.4:64484287-64484306 | MS.gene73512:intron | 15.0% |
| !!! | CTTGATAATTTTTTGAAAAT+TGG | + | chr4.4:64484377-64484396 | None:intergenic | 15.0% |
| !!! | TTAACCTATTTACTTTTTTT+GGG | - | chr4.4:64484324-64484343 | MS.gene73512:intron | 15.0% |
| !!! | TTATTTTCTCAAATTACTAT+TGG | - | chr4.4:64482788-64482807 | MS.gene73512:CDS | 15.0% |
| !! | AAAGGTAATTAAGTTAATTC+AGG | + | chr4.4:64484280-64484299 | None:intergenic | 20.0% |
| !! | CTTAAAGTTTACTTTCAAAA+TGG | - | chr4.4:64483243-64483262 | MS.gene73512:intron | 20.0% |
| !! | CTTTGAATCAATGAATTTAA+TGG | + | chr4.4:64484566-64484585 | None:intergenic | 20.0% |
| !! | GATAAGTAAAAAAAAATTGG+AGG | + | chr4.4:64484068-64484087 | None:intergenic | 20.0% |
| !! | TACAATATGAAATTCACAAT+TGG | - | chr4.4:64484682-64484701 | MS.gene73512:intron | 20.0% |
| !!! | AAGAGAATATTTCTACTTTT+GGG | + | chr4.4:64483109-64483128 | None:intergenic | 20.0% |
| !!! | CATTTTGAAAGTAAACTTTA+AGG | + | chr4.4:64483245-64483264 | None:intergenic | 20.0% |
| !!! | TAAGAGAATATTTCTACTTT+TGG | + | chr4.4:64483110-64483129 | None:intergenic | 20.0% |
| !!! | TAAGTTAATTCAGGTTTAAA+AGG | + | chr4.4:64484271-64484290 | None:intergenic | 20.0% |
| !!! | TTTTGAAAGTAAACTTTAAG+GGG | + | chr4.4:64483243-64483262 | None:intergenic | 20.0% |
| ! | AAAGTTCCTTTCAAATCTTT+AGG | - | chr4.4:64484769-64484788 | MS.gene73512:intron | 25.0% |
| ! | AATACTGTTGAAGATTATGA+TGG | - | chr4.4:64484013-64484032 | MS.gene73512:CDS | 25.0% |
| ! | ACCAAATTATCTGCAAATAT+AGG | + | chr4.4:64484418-64484437 | None:intergenic | 25.0% |
| ! | ACTTCCCAAAAAAAGTAAAT+AGG | + | chr4.4:64484331-64484350 | None:intergenic | 25.0% |
| ! | ATACTGTTGAAGATTATGAT+GGG | - | chr4.4:64484014-64484033 | MS.gene73512:CDS | 25.0% |
| ! | TAATGTTGAATTGTTGTGAT+TGG | - | chr4.4:64483826-64483845 | MS.gene73512:CDS | 25.0% |
| ! | TATGTCTTGAATATTATGCT+TGG | + | chr4.4:64482994-64483013 | None:intergenic | 25.0% |
| ! | TTCATATTGTAGACTTTGTT+TGG | + | chr4.4:64484673-64484692 | None:intergenic | 25.0% |
| ! | TTGTAAGTTTAGCAAAATCA+TGG | - | chr4.4:64482880-64482899 | MS.gene73512:CDS | 25.0% |
| ! | TTGTAGCTCCTTATATAAAA+AGG | + | chr4.4:64484298-64484317 | None:intergenic | 25.0% |
| ! | TTGTTTCCTTTATGAATCTT+GGG | + | chr4.4:64483290-64483309 | None:intergenic | 25.0% |
| !!! | AATGAATTTAATGGCTTTGA+GGG | + | chr4.4:64484557-64484576 | None:intergenic | 25.0% |
| !!! | CATTTGTTGTGTTGAAAATA+GGG | + | chr4.4:64484471-64484490 | None:intergenic | 25.0% |
| AAAACAAAAAACAGAAGGAC+TGG | + | chr4.4:64483219-64483238 | None:intergenic | 30.0% | |
| AAATGTAGTCAGATTTGTGA+CGG | + | chr4.4:64482761-64482780 | None:intergenic | 30.0% | |
| ACTTCATATCAAAGACATGT+CGG | - | chr4.4:64482715-64482734 | MS.gene73512:CDS | 30.0% | |
| ATAAAGGAAACAAGACTCAT+TGG | - | chr4.4:64483297-64483316 | MS.gene73512:intron | 30.0% | |
| ATAGCTCTTTCTATCATACA+AGG | - | chr4.4:64484860-64484879 | MS.gene73512:intron | 30.0% | |
| ATGAAATTCACAATTGGAGA+TGG | - | chr4.4:64484688-64484707 | MS.gene73512:intron | 30.0% | |
| CAATGGTATGCTCTAATATT+AGG | - | chr4.4:64483480-64483499 | MS.gene73512:intron | 30.0% | |
| CGAATAGAGTGTATTAACAT+TGG | - | chr4.4:64483976-64483995 | MS.gene73512:CDS | 30.0% | |
| CTTGAATATTATGCTTGGAT+CGG | + | chr4.4:64482989-64483008 | None:intergenic | 30.0% | |
| CTTGTTTCCTTTATGAATCT+TGG | + | chr4.4:64483291-64483310 | None:intergenic | 30.0% | |
| GCCTATATTTGCAGATAATT+TGG | - | chr4.4:64484414-64484433 | MS.gene73512:intron | 30.0% | |
| GTGATACTATAACTTGATCA+AGG | + | chr4.4:64484918-64484937 | None:intergenic | 30.0% | |
| TAAAGGAAACAAGACTCATT+GGG | - | chr4.4:64483298-64483317 | MS.gene73512:intron | 30.0% | |
| TAAGTTTAGCAAAATCATGG+TGG | - | chr4.4:64482883-64482902 | MS.gene73512:CDS | 30.0% | |
| TAGTAGAATATATCTCTGGA+GGG | - | chr4.4:64483355-64483374 | MS.gene73512:intron | 30.0% | |
| TGTTCTTAGAATTTGTGCAA+TGG | + | chr4.4:64484647-64484666 | None:intergenic | 30.0% | |
| ! | CAATGAATTTAATGGCTTTG+AGG | + | chr4.4:64484558-64484577 | None:intergenic | 30.0% |
| ! | CCTATTTTCAACACAACAAA+TGG | - | chr4.4:64484469-64484488 | MS.gene73512:intron | 30.0% |
| ! | CCTTTCAAATCTTTAGGAAA+GGG | - | chr4.4:64484775-64484794 | MS.gene73512:intron | 30.0% |
| ! | CTCAGTGTGATTTTTCTAAT+GGG | - | chr4.4:64483045-64483064 | MS.gene73512:intron | 30.0% |
| ! | TCCTTTCAAATCTTTAGGAA+AGG | - | chr4.4:64484774-64484793 | MS.gene73512:intron | 30.0% |
| ! | TCTCAGTGTGATTTTTCTAA+TGG | - | chr4.4:64483044-64483063 | MS.gene73512:intron | 30.0% |
| !! | ACAAGTTGATTTGTTGAGAT+TGG | + | chr4.4:64483803-64483822 | None:intergenic | 30.0% |
| !! | CATACAAGGATTGATGATTT+TGG | - | chr4.4:64484874-64484893 | MS.gene73512:CDS | 30.0% |
| !! | CCATTTGTTGTGTTGAAAAT+AGG | + | chr4.4:64484472-64484491 | None:intergenic | 30.0% |
| !! | TCATGTTAACTTGTGTCTTA+AGG | - | chr4.4:64483068-64483087 | MS.gene73512:intron | 30.0% |
| AAAGTTACATTCCATAACCC+TGG | - | chr4.4:64483642-64483661 | MS.gene73512:intron | 35.0% | |
| AAGCAATAACATCACCATTG+AGG | + | chr4.4:64483593-64483612 | None:intergenic | 35.0% | |
| ACAATTGGAGATGGAAGAAA+TGG | - | chr4.4:64484697-64484716 | MS.gene73512:intron | 35.0% | |
| ACTATAACTTGATCAAGGAC+AGG | + | chr4.4:64484913-64484932 | None:intergenic | 35.0% | |
| AGACATATGTGTGTTCCTTT+CGG | - | chr4.4:64483007-64483026 | MS.gene73512:CDS | 35.0% | |
| AGAGTTGAACATTTACCTTC+TGG | + | chr4.4:64482609-64482628 | None:intergenic | 35.0% | |
| AGGAAAGGGAACATTCAAAA+CGG | - | chr4.4:64484789-64484808 | MS.gene73512:intron | 35.0% | |
| ATGTTAACAGAATCACCGAA+AGG | + | chr4.4:64483025-64483044 | None:intergenic | 35.0% | |
| CAAACACTTTATAGCCTCAA+TGG | - | chr4.4:64483576-64483595 | MS.gene73512:intron | 35.0% | |
| CCCTTTCCTAAAGATTTGAA+AGG | + | chr4.4:64484778-64484797 | None:intergenic | 35.0% | |
| CTAGTAGAATATATCTCTGG+AGG | - | chr4.4:64483354-64483373 | MS.gene73512:intron | 35.0% | |
| CTATAACTTGATCAAGGACA+GGG | + | chr4.4:64484912-64484931 | None:intergenic | 35.0% | |
| CTCTAATATTAGGAGCTTCT+AGG | - | chr4.4:64483490-64483509 | MS.gene73512:intron | 35.0% | |
| GATAATTTGGTAAGAAACCC+TGG | - | chr4.4:64484427-64484446 | MS.gene73512:intron | 35.0% | |
| GGGGAAAAACAAAAAACAGA+AGG | + | chr4.4:64483224-64483243 | None:intergenic | 35.0% | |
| GGTCTAGTAGAATATATCTC+TGG | - | chr4.4:64483351-64483370 | MS.gene73512:intron | 35.0% | |
| GTTGTGTTGAAAATAGGGAA+TGG | + | chr4.4:64484466-64484485 | None:intergenic | 35.0% | |
| TCCTTTATGAATCTTGGGTT+TGG | + | chr4.4:64483285-64483304 | None:intergenic | 35.0% | |
| ! | AAGAATTTCCAAGTGCCATT+TGG | - | chr4.4:64484583-64484602 | MS.gene73512:intron | 35.0% |
| ! | AATGGTGATGTTATTGCTTG+GGG | - | chr4.4:64483594-64483613 | MS.gene73512:intron | 35.0% |
| ! | AGGCTATAAAGTGTTTGCAA+AGG | + | chr4.4:64483573-64483592 | None:intergenic | 35.0% |
| ! | CAATGGTGATGTTATTGCTT+GGG | - | chr4.4:64483593-64483612 | MS.gene73512:intron | 35.0% |
| ! | GATGATTTTGGATCTATGTG+TGG | - | chr4.4:64484886-64484905 | MS.gene73512:CDS | 35.0% |
| ! | TCAATGGTGATGTTATTGCT+TGG | - | chr4.4:64483592-64483611 | MS.gene73512:intron | 35.0% |
| !! | ACAGTGAATCACTGTTGTTT+TGG | + | chr4.4:64482947-64482966 | None:intergenic | 35.0% |
| !! | AGACCATTGATTTCCCATTT+GGG | + | chr4.4:64483336-64483355 | None:intergenic | 35.0% |
| !! | TAGACCATTGATTTCCCATT+TGG | + | chr4.4:64483337-64483356 | None:intergenic | 35.0% |
| AAAGGAACATCACCAGATTG+TGG | + | chr4.4:64483555-64483574 | None:intergenic | 40.0% | |
| AGAATCCAGACAAATGGACA+TGG | + | chr4.4:64483756-64483775 | None:intergenic | 40.0% | |
| ATAGCAACAGCATCCAAAAG+TGG | + | chr4.4:64483693-64483712 | None:intergenic | 40.0% | |
| ATGAACCATGTCCATTTGTC+TGG | - | chr4.4:64483748-64483767 | MS.gene73512:CDS | 40.0% | |
| ATTAGAGCATACCATTGACC+AGG | + | chr4.4:64483477-64483496 | None:intergenic | 40.0% | |
| CATGGTTCATTACCTCTTGT+CGG | + | chr4.4:64483738-64483757 | None:intergenic | 40.0% | |
| CTTCCCAAATGGGAAATCAA+TGG | - | chr4.4:64483330-64483349 | MS.gene73512:intron | 40.0% | |
| GAAACATGCTCTTCCCAAAT+GGG | - | chr4.4:64483320-64483339 | MS.gene73512:intron | 40.0% | |
| GAATATTATGCTTGGATCGG+AGG | + | chr4.4:64482986-64483005 | None:intergenic | 40.0% | |
| GATGGAAGAAATGGTTGTCA+TGG | - | chr4.4:64484706-64484725 | MS.gene73512:intron | 40.0% | |
| GCCAAACCCAAGATTCATAA+AGG | - | chr4.4:64483281-64483300 | MS.gene73512:intron | 40.0% | |
| TGGTTGTCATGGATCAATGA+CGG | - | chr4.4:64484717-64484736 | MS.gene73512:intron | 40.0% | |
| TGTTATTGCTTGGGGATTCA+AGG | - | chr4.4:64483602-64483621 | MS.gene73512:intron | 40.0% | |
| ! | AGGTTTGACCTTGATGGTTT+GGG | + | chr4.4:64483457-64483476 | None:intergenic | 40.0% |
| ! | GACACAAGATCTTGTTGCTT+TGG | + | chr4.4:64484508-64484527 | None:intergenic | 40.0% |
| ! | TTGAGATTGGACTAGACCTT+TGG | + | chr4.4:64483790-64483809 | None:intergenic | 40.0% |
| !! | ACAAGATCTTGTTGCTTTGG+AGG | + | chr4.4:64484505-64484524 | None:intergenic | 40.0% |
| !! | TTCCAAGTGCCATTTGGAAA+TGG | - | chr4.4:64484589-64484608 | MS.gene73512:intron | 40.0% |
| ACATTTACCTTCTGGTGACC+TGG | + | chr4.4:64482601-64482620 | None:intergenic | 45.0% | |
| AGACATGTCAGTGTTGTGTC+TGG | - | chr4.4:64482814-64482833 | MS.gene73512:CDS | 45.0% | |
| AGGGATTCAATAATCCAGCC+AGG | + | chr4.4:64484538-64484557 | None:intergenic | 45.0% | |
| CAAACCATCAAGGTCAAACC+TGG | - | chr4.4:64483456-64483475 | MS.gene73512:intron | 45.0% | |
| CAGAAGGACTGGATCAGAAA+AGG | + | chr4.4:64483208-64483227 | None:intergenic | 45.0% | |
| CATTCGCTAATGTTCATCCC+AGG | - | chr4.4:64482580-64482599 | MS.gene73512:CDS | 45.0% | |
| CATTTACCTTCTGGTGACCT+GGG | + | chr4.4:64482600-64482619 | None:intergenic | 45.0% | |
| CCAAAAGTGGACCACAAGTA+GGG | + | chr4.4:64483680-64483699 | None:intergenic | 45.0% | |
| CTCCATTTCCAAATGGCACT+TGG | + | chr4.4:64484594-64484613 | None:intergenic | 45.0% | |
| CTTCTTGAACACCAGGGTTA+TGG | + | chr4.4:64483656-64483675 | None:intergenic | 45.0% | |
| GGAAACATGCTCTTCCCAAA+TGG | - | chr4.4:64483319-64483338 | MS.gene73512:intron | 45.0% | |
| GGAGTTCATGCAGTTAGACT+TGG | - | chr4.4:64483414-64483433 | MS.gene73512:intron | 45.0% | |
| GGGATTCAATAATCCAGCCA+GGG | + | chr4.4:64484537-64484556 | None:intergenic | 45.0% | |
| GTTCAAGAAGACCCTACTTG+TGG | - | chr4.4:64483666-64483685 | MS.gene73512:intron | 45.0% | |
| TAGGGTCTTCTTGAACACCA+GGG | + | chr4.4:64483662-64483681 | None:intergenic | 45.0% | |
| TCAAGGTCAAACCTGGTCAA+TGG | - | chr4.4:64483463-64483482 | MS.gene73512:intron | 45.0% | |
| TCATTACCTCTTGTCGGCAT+CGG | + | chr4.4:64483732-64483751 | None:intergenic | 45.0% | |
| TCCAAAAGTGGACCACAAGT+AGG | + | chr4.4:64483681-64483700 | None:intergenic | 45.0% | |
| TCCACTGCTCCATTTCCAAA+TGG | + | chr4.4:64484601-64484620 | None:intergenic | 45.0% | |
| TTGACCAGGTTTGACCTTGA+TGG | + | chr4.4:64483463-64483482 | None:intergenic | 45.0% | |
| ! | CAGGTTTGACCTTGATGGTT+TGG | + | chr4.4:64483458-64483477 | None:intergenic | 45.0% |
| !! | AAGAAACCCTGGCTTTGAAG+AGG | - | chr4.4:64484438-64484457 | MS.gene73512:intron | 45.0% |
| !! | AGAAACCCTGGCTTTGAAGA+GGG | - | chr4.4:64484439-64484458 | MS.gene73512:intron | 45.0% |
| !! | AATAAAATAATAAACAATTA+AGG | - | chr4.4:64484203-64484222 | MS.gene73512:CDS | 5.0% |
| !! | ATAAAATAATAAACAATTAA+GGG | - | chr4.4:64484204-64484223 | MS.gene73512:CDS | 5.0% |
| AAGAACATGCCTCCAGGTTG+TGG | + | chr4.4:64483381-64483400 | None:intergenic | 50.0% | |
| AATGGACCCTCTTCAAAGCC+AGG | + | chr4.4:64484448-64484467 | None:intergenic | 50.0% | |
| ATCTCAGTGCCTCCACAATC+TGG | - | chr4.4:64483540-64483559 | MS.gene73512:intron | 50.0% | |
| ATGGACCCTCTTCAAAGCCA+GGG | + | chr4.4:64484447-64484466 | None:intergenic | 50.0% | |
| ATGTTCTTCCCAGTGTCGCA+TGG | - | chr4.4:64483393-64483412 | MS.gene73512:intron | 50.0% | |
| ATTCTCCGCAGTCATGCCAA+AGG | - | chr4.4:64483771-64483790 | MS.gene73512:CDS | 50.0% | |
| CATGAACTCCATGCGACACT+GGG | + | chr4.4:64483404-64483423 | None:intergenic | 50.0% | |
| CTAGACCTTTGGCATGACTG+CGG | + | chr4.4:64483779-64483798 | None:intergenic | 50.0% | |
| CTCCATCTCCCAAACCATCA+AGG | - | chr4.4:64483446-64483465 | MS.gene73512:intron | 50.0% | |
| CTGCGGAGAATCCAGACAAA+TGG | + | chr4.4:64483762-64483781 | None:intergenic | 50.0% | |
| GCCATTTGGAAATGGAGCAG+TGG | - | chr4.4:64484597-64484616 | MS.gene73512:intron | 50.0% | |
| GGAACATCACCAGATTGTGG+AGG | + | chr4.4:64483552-64483571 | None:intergenic | 50.0% | |
| GTAGGGTCTTCTTGAACACC+AGG | + | chr4.4:64483663-64483682 | None:intergenic | 50.0% | |
| TCAATAATCCAGCCAGGGAG+TGG | + | chr4.4:64484532-64484551 | None:intergenic | 50.0% | |
| ! | CCCTACTTGTGGTCCACTTT+TGG | - | chr4.4:64483677-64483696 | MS.gene73512:intron | 50.0% |
| ! | CTTGATGGTTTGGGAGATGG+AGG | + | chr4.4:64483448-64483467 | None:intergenic | 50.0% |
| ! | GACCTTGATGGTTTGGGAGA+TGG | + | chr4.4:64483451-64483470 | None:intergenic | 50.0% |
| !! | AGTGGAGCTTGTTGCAGGTA+GGG | - | chr4.4:64484615-64484634 | MS.gene73512:intron | 50.0% |
| ACTGGGAAGAACATGCCTCC+AGG | + | chr4.4:64483387-64483406 | None:intergenic | 55.0% | |
| GATCTTGTGTCACCACTCCC+TGG | - | chr4.4:64484517-64484536 | MS.gene73512:intron | 55.0% | |
| GCATGAACTCCATGCGACAC+TGG | + | chr4.4:64483405-64483424 | None:intergenic | 55.0% | |
| GTTCATCCCAGGTCACCAGA+AGG | - | chr4.4:64482591-64482610 | MS.gene73512:CDS | 55.0% | |
| ! | TACCTCTTGTCGGCATCGGA+GGG | + | chr4.4:64483728-64483747 | None:intergenic | 55.0% |
| ! | TTACCTCTTGTCGGCATCGG+AGG | + | chr4.4:64483729-64483748 | None:intergenic | 55.0% |
| !! | CAGTGGAGCTTGTTGCAGGT+AGG | - | chr4.4:64484614-64484633 | MS.gene73512:intron | 55.0% |
| TACCCTCCGATGCCGACAAG+AGG | - | chr4.4:64483723-64483742 | MS.gene73512:intron | 60.0% | |
| TTGTGTCACCACTCCCTGGC+TGG | - | chr4.4:64484521-64484540 | MS.gene73512:intron | 60.0% | |
| ! | ATCTCTGGAGGGCCACAACC+TGG | - | chr4.4:64483366-64483385 | MS.gene73512:intron | 60.0% |
| !! | GGAGCAGTGGAGCTTGTTGC+AGG | - | chr4.4:64484610-64484629 | MS.gene73512:intron | 60.0% |
| TCTGGAGGGCCACAACCTGG+AGG | - | chr4.4:64483369-64483388 | MS.gene73512:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 64482525 | 64484948 | 64482525 | ID=MS.gene73512 |
| chr4.4 | mRNA | 64482525 | 64484948 | 64482525 | ID=MS.gene73512.t1;Parent=MS.gene73512 |
| chr4.4 | exon | 64484861 | 64484948 | 64484861 | ID=MS.gene73512.t1.exon1;Parent=MS.gene73512.t1 |
| chr4.4 | CDS | 64484861 | 64484948 | 64484861 | ID=cds.MS.gene73512.t1;Parent=MS.gene73512.t1 |
| chr4.4 | exon | 64483729 | 64484223 | 64483729 | ID=MS.gene73512.t1.exon2;Parent=MS.gene73512.t1 |
| chr4.4 | CDS | 64483729 | 64484223 | 64483729 | ID=cds.MS.gene73512.t1;Parent=MS.gene73512.t1 |
| chr4.4 | exon | 64482525 | 64483045 | 64482525 | ID=MS.gene73512.t1.exon3;Parent=MS.gene73512.t1 |
| chr4.4 | CDS | 64482525 | 64483045 | 64482525 | ID=cds.MS.gene73512.t1;Parent=MS.gene73512.t1 |
| Gene Sequence |
| Protein sequence |
