Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74718.t1 | XP_013451743.1 | 92.3 | 168 | 13 | 0 | 1 | 168 | 1 | 168 | 1.30E-81 | 312.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74718.t1 | A0A072U8R2 | 92.3 | 168 | 13 | 0 | 1 | 168 | 1 | 168 | 9.3e-82 | 312.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049758 | MS.gene74718 | 0.835058 | 2.09E-56 | -1.69E-46 |
| MS.gene050301 | MS.gene74718 | 0.820196 | 7.79E-53 | -1.69E-46 |
| MS.gene051471 | MS.gene74718 | 0.836808 | 7.53E-57 | -1.69E-46 |
| MS.gene051662 | MS.gene74718 | 0.812756 | 3.61E-51 | -1.69E-46 |
| MS.gene051663 | MS.gene74718 | 0.802304 | 5.98E-49 | -1.69E-46 |
| MS.gene052326 | MS.gene74718 | 0.80641 | 8.34E-50 | -1.69E-46 |
| MS.gene053836 | MS.gene74718 | 0.829161 | 6.01E-55 | -1.69E-46 |
| MS.gene05455 | MS.gene74718 | 0.801531 | 8.62E-49 | -1.69E-46 |
| MS.gene054983 | MS.gene74718 | 0.81038 | 1.19E-50 | -1.69E-46 |
| MS.gene055277 | MS.gene74718 | 0.812395 | 4.33E-51 | -1.69E-46 |
| MS.gene055422 | MS.gene74718 | 0.814488 | 1.50E-51 | -1.69E-46 |
| MS.gene055428 | MS.gene74718 | 0.834458 | 2.96E-56 | -1.69E-46 |
| MS.gene056612 | MS.gene74718 | 0.806572 | 7.71E-50 | -1.69E-46 |
| MS.gene05733 | MS.gene74718 | 0.811183 | 7.95E-51 | -1.69E-46 |
| MS.gene05811 | MS.gene74718 | 0.818276 | 2.13E-52 | -1.69E-46 |
| MS.gene059597 | MS.gene74718 | 0.810343 | 1.21E-50 | -1.69E-46 |
| MS.gene05984 | MS.gene74718 | 0.80036 | 1.49E-48 | -1.69E-46 |
| MS.gene059894 | MS.gene74718 | 0.845868 | 3.10E-59 | -1.69E-46 |
| MS.gene061049 | MS.gene74718 | 0.802488 | 5.48E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74718.t1 | MTR_6g034205 | 92.053 | 151 | 12 | 0 | 18 | 168 | 18 | 168 | 1.88e-101 | 289 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74718.t1 | AT5G52960 | 53.672 | 177 | 66 | 4 | 1 | 168 | 1 | 170 | 3.04e-59 | 182 |
Find 32 sgRNAs with CRISPR-Local
Find 236 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAAGCTTGGTTGAAGAGTT+TGG | 0.257618 | 6.3:-24630707 | MS.gene74718:CDS |
| GAAGCTTGGTTGAAGAGTTT+GGG | 0.305121 | 6.3:-24630706 | MS.gene74718:CDS |
| TTCTGAAGCCACTCATCTTC+AGG | 0.322161 | 6.3:+24630778 | None:intergenic |
| GCATAAAACAATGGTGGAAA+TGG | 0.369929 | 6.3:+24630840 | None:intergenic |
| TTAATCAGAGTAAGGATGAT+AGG | 0.370877 | 6.3:-24630681 | MS.gene74718:CDS |
| AAATGGGTTGTGTGAAAGAT+TGG | 0.398264 | 6.3:+24630913 | None:intergenic |
| TTTGGGGTTTAATCAGAGTA+AGG | 0.400405 | 6.3:-24630689 | MS.gene74718:CDS |
| ATGTTACTGACCTCTATGTT+AGG | 0.401705 | 6.3:-24630609 | MS.gene74718:intron |
| CCACTCATCTTCAGGAACTA+AGG | 0.427512 | 6.3:+24630786 | None:intergenic |
| GGTGGTGTTTGTGAATGTTA+AGG | 0.450789 | 6.3:+24630972 | None:intergenic |
| TACAAAGGCTTAGTCTTCTC+AGG | 0.455056 | 6.3:+24630751 | None:intergenic |
| GCTTGCCTTGTATTGAAGCT+TGG | 0.464508 | 6.3:-24630720 | MS.gene74718:CDS |
| TGTGAATGTTAAGGTTGTGA+TGG | 0.490304 | 6.3:+24630981 | None:intergenic |
| GACATTGAGAATGCTGTGCT+TGG | 0.498630 | 6.3:-24627416 | MS.gene74718:CDS |
| AGGTATTTGAAGAGTGGACC+TGG | 0.511447 | 6.3:-24627491 | MS.gene74718:CDS |
| GGGTTGTTAATAAGAGTGAT+TGG | 0.515760 | 6.3:-24630651 | MS.gene74718:CDS |
| TGAGGTTGGGAATGTGATGT+TGG | 0.526005 | 6.3:+24630951 | None:intergenic |
| TAATCAGAGTAAGGATGATA+GGG | 0.526131 | 6.3:-24630680 | MS.gene74718:CDS |
| CATAAAACAATGGTGGAAAT+GGG | 0.526649 | 6.3:+24630841 | None:intergenic |
| CACTCATCTTCAGGAACTAA+GGG | 0.528082 | 6.3:+24630787 | None:intergenic |
| GGTTGGGAATGTGATGTTGG+TGG | 0.536430 | 6.3:+24630954 | None:intergenic |
| ATTGAGAATGCTGTGCTTGG+AGG | 0.543070 | 6.3:-24627413 | MS.gene74718:CDS |
| AAGCTTGGTTGAAGAGTTTG+GGG | 0.545074 | 6.3:-24630705 | MS.gene74718:CDS |
| TTCAACCAAGCTTCAATACA+AGG | 0.545936 | 6.3:+24630715 | None:intergenic |
| TGGTGCAGGTATTTGAAGAG+TGG | 0.553975 | 6.3:-24627497 | MS.gene74718:intron |
| GAATGTTAAGGTTGTGATGG+TGG | 0.561334 | 6.3:+24630984 | None:intergenic |
| AAAACACTCACCTAACATAG+AGG | 0.581686 | 6.3:+24630599 | None:intergenic |
| CCTTAGTTCCTGAAGATGAG+TGG | 0.609305 | 6.3:-24630786 | MS.gene74718:CDS |
| ACCTGTGCATAAAACAATGG+TGG | 0.649501 | 6.3:+24630834 | None:intergenic |
| GGCAAGCTATGTGTATACAA+AGG | 0.667400 | 6.3:+24630736 | None:intergenic |
| GGTATTTGAAGAGTGGACCT+GGG | 0.669089 | 6.3:-24627490 | MS.gene74718:CDS |
| TGAACCTGTGCATAAAACAA+TGG | 0.718354 | 6.3:+24630831 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGATTTATAAAATGCAATA+AGG | - | chr6.3:24629372-24629391 | MS.gene74718:intron | 15.0% |
| !! | ACTAAAAAAATCATAATACA+AGG | + | chr6.3:24630506-24630525 | None:intergenic | 15.0% |
| !! | ACTTAAATGAGATAAATATT+AGG | + | chr6.3:24630478-24630497 | None:intergenic | 15.0% |
| !! | CTAAAAAAATCATAATACAA+GGG | + | chr6.3:24630505-24630524 | None:intergenic | 15.0% |
| !!! | AAAACTTAAAAAAGTATGTT+TGG | + | chr6.3:24630842-24630861 | None:intergenic | 15.0% |
| !!! | AGAAATTAGTCTAAAAAAAT+AGG | + | chr6.3:24628401-24628420 | None:intergenic | 15.0% |
| !!! | GAAATTAGTCTAAAAAAATA+GGG | + | chr6.3:24628400-24628419 | None:intergenic | 15.0% |
| !!! | TCATTTTCTAAAAGTATTAT+CGG | + | chr6.3:24627980-24627999 | None:intergenic | 15.0% |
| !! | AAAACAAAAACCTTAAAAGA+AGG | + | chr6.3:24627828-24627847 | None:intergenic | 20.0% |
| !! | AAGAAATTATCTAAATGACT+CGG | + | chr6.3:24630300-24630319 | None:intergenic | 20.0% |
| !! | AATTGTTTAACACAAAACAA+CGG | + | chr6.3:24628305-24628324 | None:intergenic | 20.0% |
| !! | ACTTATTTGAACATATCTAA+TGG | + | chr6.3:24630815-24630834 | None:intergenic | 20.0% |
| !! | ATAGTATTAGTATAGTATTG+TGG | + | chr6.3:24628076-24628095 | None:intergenic | 20.0% |
| !!! | AAAGAATTTGATTTTTCCAT+TGG | - | chr6.3:24629284-24629303 | MS.gene74718:intron | 20.0% |
| !!! | TATGCTTCTTTAAACATTTT+GGG | + | chr6.3:24629265-24629284 | None:intergenic | 20.0% |
| !!! | TTATGCTTCTTTAAACATTT+TGG | + | chr6.3:24629266-24629285 | None:intergenic | 20.0% |
| !!! | TTTAATAGGTTTTTGAGATT+TGG | - | chr6.3:24628896-24628915 | MS.gene74718:intron | 20.0% |
| !!! | TTTTTCTTTTCCTTCTTTTA+AGG | - | chr6.3:24627815-24627834 | MS.gene74718:intron | 20.0% |
| !!! | TTTTTTAGTATACAAACTGT+CGG | - | chr6.3:24630517-24630536 | MS.gene74718:intron | 20.0% |
| ! | AAGTAGCTAATGTCTTAAAT+TGG | - | chr6.3:24628644-24628663 | MS.gene74718:intron | 25.0% |
| ! | AGTAGCTAATGTCTTAAATT+GGG | - | chr6.3:24628645-24628664 | MS.gene74718:intron | 25.0% |
| ! | GAAAATACGAAAAAAAAGTG+AGG | + | chr6.3:24630407-24630426 | None:intergenic | 25.0% |
| ! | GGTCATATCAACTTATATAA+AGG | + | chr6.3:24630323-24630342 | None:intergenic | 25.0% |
| ! | GTGGTTCAAAATAGTTTAAT+AGG | - | chr6.3:24628882-24628901 | MS.gene74718:intron | 25.0% |
| ! | TTATGAATATAGTTGAACAC+AGG | - | chr6.3:24630728-24630747 | MS.gene74718:CDS | 25.0% |
| !! | AATTGCTCAATTGATTTATG+AGG | - | chr6.3:24628113-24628132 | MS.gene74718:intron | 25.0% |
| !! | CATTTAAAACCTTAATGTGA+CGG | - | chr6.3:24628744-24628763 | MS.gene74718:intron | 25.0% |
| !! | GGATATTTGAGTTTGAATTT+AGG | - | chr6.3:24628592-24628611 | MS.gene74718:intron | 25.0% |
| !! | TTGGATTTTGTTAGTAGAAA+AGG | - | chr6.3:24628179-24628198 | MS.gene74718:intron | 25.0% |
| !!! | AGAAATGGATTTTGTGAAAT+GGG | + | chr6.3:24627500-24627519 | None:intergenic | 25.0% |
| !!! | GTAGAAAAGGTTTTATATTG+TGG | - | chr6.3:24628192-24628211 | MS.gene74718:intron | 25.0% |
| !!! | TTTTTGAAGGAAATTGAAAG+TGG | + | chr6.3:24627532-24627551 | None:intergenic | 25.0% |
| ACAACAACAATGTGAATGTT+CGG | + | chr6.3:24629865-24629884 | None:intergenic | 30.0% | |
| ACTAATACTATTCACCTATG+TGG | - | chr6.3:24628085-24628104 | MS.gene74718:intron | 30.0% | |
| ATACTGTTTGACAGAGTTTA+TGG | + | chr6.3:24630778-24630797 | None:intergenic | 30.0% | |
| ATAGCACTATTTGACAATAC+TGG | + | chr6.3:24628257-24628276 | None:intergenic | 30.0% | |
| ATATAGTTGAACACAGGTTA+TGG | - | chr6.3:24630734-24630753 | MS.gene74718:CDS | 30.0% | |
| ATTCTTGATATCGATCAATG+TGG | - | chr6.3:24628225-24628244 | MS.gene74718:intron | 30.0% | |
| CAATATGAAGAATTGCAATG+CGG | + | chr6.3:24628996-24629015 | None:intergenic | 30.0% | |
| CATCATAAACCTTAATGTGA+CGG | - | chr6.3:24629239-24629258 | MS.gene74718:intron | 30.0% | |
| CGATATCAAGAATTGAAATG+CGG | + | chr6.3:24628218-24628237 | None:intergenic | 30.0% | |
| CTGATTGAGAAGTTAGATAA+AGG | + | chr6.3:24630429-24630448 | None:intergenic | 30.0% | |
| CTTGTTAAAGCCACATTAAT+CGG | + | chr6.3:24629028-24629047 | None:intergenic | 30.0% | |
| GTAGCTAATGTCTTAAATTG+GGG | - | chr6.3:24628646-24628665 | MS.gene74718:intron | 30.0% | |
| TAACGTCCTTTAGTAAGAAT+CGG | - | chr6.3:24630211-24630230 | MS.gene74718:intron | 30.0% | |
| TAATCAGAGTAAGGATGATA+GGG | - | chr6.3:24627714-24627733 | MS.gene74718:intron | 30.0% | |
| TACTGTAATGTAGCAGAATT+TGG | - | chr6.3:24629158-24629177 | MS.gene74718:intron | 30.0% | |
| TATGTATGAATGTGTACACT+AGG | - | chr6.3:24628838-24628857 | MS.gene74718:intron | 30.0% | |
| TGAGATTTGGATATTTGAGT+TGG | - | chr6.3:24628909-24628928 | MS.gene74718:intron | 30.0% | |
| TTAATCAGAGTAAGGATGAT+AGG | - | chr6.3:24627713-24627732 | MS.gene74718:intron | 30.0% | |
| TTCTATAATCCTTCCTGATT+AGG | - | chr6.3:24629987-24630006 | MS.gene74718:intron | 30.0% | |
| ! | CATAAAACAATGGTGGAAAT+GGG | + | chr6.3:24627556-24627575 | None:intergenic | 30.0% |
| ! | CTCAATTGATTTATGAGGTT+TGG | - | chr6.3:24628118-24628137 | MS.gene74718:intron | 30.0% |
| ! | GAGTGAAGTACTTAGTTAAA+GGG | + | chr6.3:24629589-24629608 | None:intergenic | 30.0% |
| ! | GTGATGAGTTTAACTTCTAT+TGG | - | chr6.3:24628160-24628179 | MS.gene74718:intron | 30.0% |
| ! | TATGTATGAAAGTGTACACA+AGG | - | chr6.3:24628502-24628521 | MS.gene74718:intron | 30.0% |
| ! | TTTTGAATGTGCTTGTGAAA+AGG | + | chr6.3:24629346-24629365 | None:intergenic | 30.0% |
| ! | TTTTTGTGGAAATTGAGGTT+GGG | + | chr6.3:24627459-24627478 | None:intergenic | 30.0% |
| !! | AACTATTTTGAACCACACAA+AGG | + | chr6.3:24628878-24628897 | None:intergenic | 30.0% |
| !! | ACTATTTTGAACCACACAAA+GGG | + | chr6.3:24628877-24628896 | None:intergenic | 30.0% |
| !! | GAGAAATGGATTTTGTGAAA+TGG | + | chr6.3:24627501-24627520 | None:intergenic | 30.0% |
| !! | GATAAAGTGTTGTCAAATAG+CGG | - | chr6.3:24629118-24629137 | MS.gene74718:intron | 30.0% |
| !! | TGGATATTTGAGTTGGAATT+TGG | - | chr6.3:24628916-24628935 | MS.gene74718:intron | 30.0% |
| !! | TTTTCTTGCTTTTGTGTTGT+GGG | - | chr6.3:24628787-24628806 | MS.gene74718:intron | 30.0% |
| !!! | GACATTGAAACGTTTTGATT+TGG | - | chr6.3:24630877-24630896 | MS.gene74718:CDS | 30.0% |
| !!! | GTGAAAGATTGGATTTTTTG+TGG | + | chr6.3:24627473-24627492 | None:intergenic | 30.0% |
| !!! | TGGATTTTTTGTGGAAATTG+AGG | + | chr6.3:24627464-24627483 | None:intergenic | 30.0% |
| !!! | TTGAGGTTTTGGTTTTTTGT+GGG | - | chr6.3:24627874-24627893 | MS.gene74718:intron | 30.0% |
| !!! | TTGGACAAATCGCTTTTTTA+CGG | - | chr6.3:24629177-24629196 | MS.gene74718:intron | 30.0% |
| !!! | TTTGAGGTTTTGGTTTTTTG+TGG | - | chr6.3:24627873-24627892 | MS.gene74718:intron | 30.0% |
| !!! | TTTGCTTGCTTTTGTTTTGT+GGG | - | chr6.3:24627849-24627868 | MS.gene74718:intron | 30.0% |
| !!! | TTTTTTGTGGAAATTGAGGT+TGG | + | chr6.3:24627460-24627479 | None:intergenic | 30.0% |
| AAAACACTCACCTAACATAG+AGG | + | chr6.3:24627798-24627817 | None:intergenic | 35.0% | |
| AACATCACTGAAGTGAACTT+GGG | - | chr6.3:24629927-24629946 | MS.gene74718:intron | 35.0% | |
| ATCTTGAAAAAGATGTGGAG+AGG | - | chr6.3:24630928-24630947 | MS.gene74718:CDS | 35.0% | |
| ATGTTACTGACCTCTATGTT+AGG | - | chr6.3:24627785-24627804 | MS.gene74718:intron | 35.0% | |
| ATTTGACCAATACCAGTGAA+GGG | + | chr6.3:24629905-24629924 | None:intergenic | 35.0% | |
| CAAACAGAGCAGTATACAAT+GGG | + | chr6.3:24630585-24630604 | None:intergenic | 35.0% | |
| CAAATAGTGCTATAACGAAG+TGG | - | chr6.3:24629054-24629073 | MS.gene74718:intron | 35.0% | |
| CAATGTGAATGTTCGGTAAT+CGG | + | chr6.3:24629858-24629877 | None:intergenic | 35.0% | |
| GCATATAATAGCTATCGCAA+GGG | + | chr6.3:24629681-24629700 | None:intergenic | 35.0% | |
| GCTACTCTCATATACTCTAA+TGG | - | chr6.3:24630184-24630203 | MS.gene74718:intron | 35.0% | |
| GCTTCTATTTGACAACACTT+CGG | + | chr6.3:24628332-24628351 | None:intergenic | 35.0% | |
| GGGTTGTTAATAAGAGTGAT+TGG | - | chr6.3:24627743-24627762 | MS.gene74718:intron | 35.0% | |
| GTAGAGAATTCCGATTAATG+TGG | - | chr6.3:24629015-24629034 | MS.gene74718:intron | 35.0% | |
| TAATAGAACTGAGTCAGTCT+TGG | - | chr6.3:24629754-24629773 | MS.gene74718:intron | 35.0% | |
| TATTTGACCAATACCAGTGA+AGG | + | chr6.3:24629906-24629925 | None:intergenic | 35.0% | |
| TCCTTTAGTAAGAATCGGTT+CGG | - | chr6.3:24630216-24630235 | MS.gene74718:intron | 35.0% | |
| TGAACCTGTGCATAAAACAA+TGG | + | chr6.3:24627566-24627585 | None:intergenic | 35.0% | |
| TGAGGTTTGGATGTTTGAAT+TGG | - | chr6.3:24628131-24628150 | MS.gene74718:intron | 35.0% | |
| TGGGAATCTTGAAAAAGATG+TGG | - | chr6.3:24630923-24630942 | MS.gene74718:CDS | 35.0% | |
| TGTGAATGTTAAGGTTGTGA+TGG | + | chr6.3:24627416-24627435 | None:intergenic | 35.0% | |
| TTATGTTATTCCCCTTTGTG+TGG | - | chr6.3:24628863-24628882 | MS.gene74718:intron | 35.0% | |
| TTCAACCAAGCTTCAATACA+AGG | + | chr6.3:24627682-24627701 | None:intergenic | 35.0% | |
| TTGAGGTTTGATGTTTGTGT+GGG | - | chr6.3:24628813-24628832 | MS.gene74718:intron | 35.0% | |
| ! | AAGTGGCTTTTGATGAGAAA+TGG | + | chr6.3:24627515-24627534 | None:intergenic | 35.0% |
| ! | AATTTTGAACCACACAATGG+TGG | + | chr6.3:24628550-24628569 | None:intergenic | 35.0% |
| ! | AGCAATTTTGAACCACACAA+TGG | + | chr6.3:24628553-24628572 | None:intergenic | 35.0% |
| ! | GCATAAAACAATGGTGGAAA+TGG | + | chr6.3:24627557-24627576 | None:intergenic | 35.0% |
| ! | GGAGTGAAGTACTTAGTTAA+AGG | + | chr6.3:24629590-24629609 | None:intergenic | 35.0% |
| ! | TAAGGATGATAGGGCTTTTT+GGG | - | chr6.3:24627723-24627742 | MS.gene74718:intron | 35.0% |
| ! | TGAGCAATTTTGAACCACAT+AGG | + | chr6.3:24628102-24628121 | None:intergenic | 35.0% |
| ! | TGTTTTGCGATACACAATGT+AGG | - | chr6.3:24629096-24629115 | MS.gene74718:intron | 35.0% |
| ! | TTTGAGGTTTGATGTTTGTG+TGG | - | chr6.3:24628812-24628831 | MS.gene74718:intron | 35.0% |
| ! | TTTGGGGTTTAATCAGAGTA+AGG | - | chr6.3:24627705-24627724 | MS.gene74718:intron | 35.0% |
| ! | TTTTGTGTTGTGGGTTTTTG+AGG | - | chr6.3:24628796-24628815 | MS.gene74718:intron | 35.0% |
| !! | AAATGGGTTGTGTGAAAGAT+TGG | + | chr6.3:24627484-24627503 | None:intergenic | 35.0% |
| !! | AATTGCTCAATTGATTTGCG+AGG | - | chr6.3:24628566-24628585 | MS.gene74718:intron | 35.0% |
| !! | CTATTTTGAACCACACAAAG+GGG | + | chr6.3:24628876-24628895 | None:intergenic | 35.0% |
| !! | GAAGCCAGTTTTATCAATTG+TGG | + | chr6.3:24629204-24629223 | None:intergenic | 35.0% |
| !! | GTTTTCTTGCTTTTGTGTTG+TGG | - | chr6.3:24628786-24628805 | MS.gene74718:intron | 35.0% |
| !!! | ACATCTTTTTCAAGATTCCC+AGG | + | chr6.3:24630924-24630943 | None:intergenic | 35.0% |
| !!! | CTTTTGTTTTGTGGGTTTTG+AGG | - | chr6.3:24627857-24627876 | MS.gene74718:intron | 35.0% |
| !!! | GTTTGCTTGCTTTTGTTTTG+TGG | - | chr6.3:24627848-24627867 | MS.gene74718:intron | 35.0% |
| !!! | TGAGGTTTTGGTTTTTTGTG+GGG | - | chr6.3:24627875-24627894 | MS.gene74718:intron | 35.0% |
| !!! | TTTTGTGGGTTTTGAGGTTT+TGG | - | chr6.3:24627863-24627882 | MS.gene74718:intron | 35.0% |
| AAGCTTGGTTGAAGAGTTTG+GGG | - | chr6.3:24627689-24627708 | MS.gene74718:intron | 40.0% | |
| ACAATCTCATCAGCAGAGAA+GGG | + | chr6.3:24629524-24629543 | None:intergenic | 40.0% | |
| ACCATAGACTATAGGAGTGA+GGG | + | chr6.3:24629464-24629483 | None:intergenic | 40.0% | |
| ACCTGTGCATAAAACAATGG+TGG | + | chr6.3:24627563-24627582 | None:intergenic | 40.0% | |
| AGCATAGGACCATAGACTAT+AGG | + | chr6.3:24629472-24629491 | None:intergenic | 40.0% | |
| CAACATCACTGAAGTGAACT+TGG | - | chr6.3:24629926-24629945 | MS.gene74718:intron | 40.0% | |
| CACAGAAGCAAGCAAACAAA+AGG | + | chr6.3:24628448-24628467 | None:intergenic | 40.0% | |
| CACTCATCTTCAGGAACTAA+GGG | + | chr6.3:24627610-24627629 | None:intergenic | 40.0% | |
| CCAAACAGAGCAGTATACAA+TGG | + | chr6.3:24630586-24630605 | None:intergenic | 40.0% | |
| CCATTGTATACTGCTCTGTT+TGG | - | chr6.3:24630583-24630602 | MS.gene74718:intron | 40.0% | |
| CGGTCCACAATTGATAAAAC+TGG | - | chr6.3:24629197-24629216 | MS.gene74718:intron | 40.0% | |
| CTATGGTCCTATGCTAATGA+CGG | - | chr6.3:24629477-24629496 | MS.gene74718:intron | 40.0% | |
| GAAGCTTGGTTGAAGAGTTT+GGG | - | chr6.3:24627688-24627707 | MS.gene74718:intron | 40.0% | |
| GAATGTTAAGGTTGTGATGG+TGG | + | chr6.3:24627413-24627432 | None:intergenic | 40.0% | |
| GGCAAGCTATGTGTATACAA+AGG | + | chr6.3:24627661-24627680 | None:intergenic | 40.0% | |
| GGCATATAATAGCTATCGCA+AGG | + | chr6.3:24629682-24629701 | None:intergenic | 40.0% | |
| GGGGTGTATGTATGAAAGTA+AGG | - | chr6.3:24627894-24627913 | MS.gene74718:intron | 40.0% | |
| GGTGGTGTTTGTGAATGTTA+AGG | + | chr6.3:24627425-24627444 | None:intergenic | 40.0% | |
| GTTTATGATGTATGTGACCG+TGG | + | chr6.3:24629229-24629248 | None:intergenic | 40.0% | |
| TATATGCCGAGCCTAATGAA+GGG | - | chr6.3:24629694-24629713 | MS.gene74718:intron | 40.0% | |
| TCATGTTAGCCGTCACATTA+AGG | + | chr6.3:24628756-24628775 | None:intergenic | 40.0% | |
| TGAAGCTTGGTTGAAGAGTT+TGG | - | chr6.3:24627687-24627706 | MS.gene74718:intron | 40.0% | |
| TGCTATGTGTCAGTGATATG+AGG | + | chr6.3:24630061-24630080 | None:intergenic | 40.0% | |
| TTATATGCCGAGCCTAATGA+AGG | - | chr6.3:24629693-24629712 | MS.gene74718:intron | 40.0% | |
| TTGATATGACCCCACTTAGT+GGG | - | chr6.3:24630332-24630351 | MS.gene74718:intron | 40.0% | |
| TTTGACCAATACCAGTGAAG+GGG | + | chr6.3:24629904-24629923 | None:intergenic | 40.0% | |
| ! | GATAAAACTGGCTTCAACCA+CGG | - | chr6.3:24629209-24629228 | MS.gene74718:intron | 40.0% |
| ! | GTAAGGATGATAGGGCTTTT+TGG | - | chr6.3:24627722-24627741 | MS.gene74718:intron | 40.0% |
| ! | TACAAAGGCTTAGTCTTCTC+AGG | + | chr6.3:24627646-24627665 | None:intergenic | 40.0% |
| ! | TCCGAACCGATTCTTACTAA+AGG | + | chr6.3:24630220-24630239 | None:intergenic | 40.0% |
| !! | ACTTTCAAGTTCCAATGCCA+TGG | + | chr6.3:24630015-24630034 | None:intergenic | 40.0% |
| !! | CTCAATTGATTTGCGAGGTT+TGG | - | chr6.3:24628571-24628590 | MS.gene74718:intron | 40.0% |
| !! | TCCACCATTGTTTTATGCAC+AGG | - | chr6.3:24627559-24627578 | MS.gene74718:intron | 40.0% |
| !!! | GAAACGTTTTGATTTGGTGC+AGG | - | chr6.3:24630883-24630902 | MS.gene74718:CDS | 40.0% |
| !!! | GGTGGAAATGGGTTTTTTGA+AGG | + | chr6.3:24627545-24627564 | None:intergenic | 40.0% |
| AAGTACTTCACTCCCTGTAG+TGG | - | chr6.3:24629596-24629615 | MS.gene74718:intron | 45.0% | |
| AATCTCATCAGCAGAGAAGG+GGG | + | chr6.3:24629522-24629541 | None:intergenic | 45.0% | |
| ACACAGTATCCACCATTGTG+TGG | - | chr6.3:24628538-24628557 | MS.gene74718:intron | 45.0% | |
| AGGAGTGAGGGAACATTGTA+AGG | + | chr6.3:24629452-24629471 | None:intergenic | 45.0% | |
| AGGTATTTGAAGAGTGGACC+TGG | - | chr6.3:24630903-24630922 | MS.gene74718:CDS | 45.0% | |
| AGTACTTCACTCCCTGTAGT+GGG | - | chr6.3:24629597-24629616 | MS.gene74718:intron | 45.0% | |
| ATATGCCGAGCCTAATGAAG+GGG | - | chr6.3:24629695-24629714 | MS.gene74718:intron | 45.0% | |
| ATTGAGAATGCTGTGCTTGG+AGG | - | chr6.3:24630981-24631000 | MS.gene74718:CDS | 45.0% | |
| CAATCTCATCAGCAGAGAAG+GGG | + | chr6.3:24629523-24629542 | None:intergenic | 45.0% | |
| CAATGCCATGGTTCCTAATC+AGG | + | chr6.3:24630003-24630022 | None:intergenic | 45.0% | |
| CACAATCTCATCAGCAGAGA+AGG | + | chr6.3:24629525-24629544 | None:intergenic | 45.0% | |
| CACAATGCCGTCATTAGCAT+AGG | + | chr6.3:24629487-24629506 | None:intergenic | 45.0% | |
| CACATGTGTGAGTGTCATGT+CGG | - | chr6.3:24628016-24628035 | MS.gene74718:intron | 45.0% | |
| CCACTCATCTTCAGGAACTA+AGG | + | chr6.3:24627611-24627630 | None:intergenic | 45.0% | |
| CCTTAGTTCCTGAAGATGAG+TGG | - | chr6.3:24627608-24627627 | MS.gene74718:intron | 45.0% | |
| CTATGCTAATGACGGCATTG+TGG | - | chr6.3:24629485-24629504 | MS.gene74718:intron | 45.0% | |
| CTGATTAGGAACCATGGCAT+TGG | - | chr6.3:24630001-24630020 | MS.gene74718:intron | 45.0% | |
| CTTCTCTGCTGATGAGATTG+TGG | - | chr6.3:24629523-24629542 | MS.gene74718:intron | 45.0% | |
| GACATTGAGAATGCTGTGCT+TGG | - | chr6.3:24630978-24630997 | MS.gene74718:CDS | 45.0% | |
| GACCATAGACTATAGGAGTG+AGG | + | chr6.3:24629465-24629484 | None:intergenic | 45.0% | |
| GAGATTGTGGTCTTTCCAGT+TGG | - | chr6.3:24629536-24629555 | MS.gene74718:intron | 45.0% | |
| GCTTCTGTGTTGTGAGTTTG+AGG | - | chr6.3:24628459-24628478 | MS.gene74718:intron | 45.0% | |
| GCTTGCCTTGTATTGAAGCT+TGG | - | chr6.3:24627674-24627693 | MS.gene74718:intron | 45.0% | |
| GGAGAACATAACGTGTGGAT+TGG | + | chr6.3:24629660-24629679 | None:intergenic | 45.0% | |
| GGAGTGAGGGAACATTGTAA+GGG | + | chr6.3:24629451-24629470 | None:intergenic | 45.0% | |
| GGTATTTGAAGAGTGGACCT+GGG | - | chr6.3:24630904-24630923 | MS.gene74718:CDS | 45.0% | |
| GTTGATATGACCCCACTTAG+TGG | - | chr6.3:24630331-24630350 | MS.gene74718:intron | 45.0% | |
| TCCCACGTTCCTGCAAAAAA+GGG | - | chr6.3:24629563-24629582 | MS.gene74718:intron | 45.0% | |
| TCCCTCACTCCTATAGTCTA+TGG | - | chr6.3:24629460-24629479 | MS.gene74718:intron | 45.0% | |
| TCCTTCCTGATTAGGAACCA+TGG | - | chr6.3:24629995-24630014 | MS.gene74718:intron | 45.0% | |
| TGAGGTTGGGAATGTGATGT+TGG | + | chr6.3:24627446-24627465 | None:intergenic | 45.0% | |
| TGGAACACACCTTTGATCAG+AGG | - | chr6.3:24628042-24628061 | MS.gene74718:intron | 45.0% | |
| TGGTGCAGGTATTTGAAGAG+TGG | - | chr6.3:24630897-24630916 | MS.gene74718:CDS | 45.0% | |
| TTCTTCCCCTTCACTGGTAT+TGG | - | chr6.3:24629896-24629915 | MS.gene74718:intron | 45.0% | |
| ! | AAGCCTTATCCCACTAAGTG+GGG | + | chr6.3:24630344-24630363 | None:intergenic | 45.0% |
| ! | ACACCTTTGATCAGAGGTGT+TGG | - | chr6.3:24628048-24628067 | MS.gene74718:intron | 45.0% |
| ! | ACCATGCATACCTTCTAGCT+AGG | + | chr6.3:24629319-24629338 | None:intergenic | 45.0% |
| ! | CAAGCCTTATCCCACTAAGT+GGG | + | chr6.3:24630345-24630364 | None:intergenic | 45.0% |
| ! | CATTTTGGGCCGTCACATTA+AGG | + | chr6.3:24629251-24629270 | None:intergenic | 45.0% |
| ! | CCATGCATACCTTCTAGCTA+GGG | + | chr6.3:24629318-24629337 | None:intergenic | 45.0% |
| ! | TGCGCTATAGCATTTTCGTG+TGG | - | chr6.3:24628358-24628377 | MS.gene74718:intron | 45.0% |
| ! | TTGTTGTTCTTCCCCTTCAC+TGG | - | chr6.3:24629890-24629909 | MS.gene74718:intron | 45.0% |
| !! | GGTATTGACGTGTCAATGTC+AGG | + | chr6.3:24627959-24627978 | None:intergenic | 45.0% |
| !! | TTCTGAAGCCACTCATCTTC+AGG | + | chr6.3:24627619-24627638 | None:intergenic | 45.0% |
| !!! | GTTAAAGGGCCCTTTTTTGC+AGG | + | chr6.3:24629575-24629594 | None:intergenic | 45.0% |
| CAAGATCCTTACTCGGGATC+CGG | + | chr6.3:24629721-24629740 | None:intergenic | 50.0% | |
| CCACTTAGTGGGATAAGGCT+TGG | - | chr6.3:24630343-24630362 | MS.gene74718:intron | 50.0% | |
| CCAGCTCAAGATCCTTACTC+GGG | + | chr6.3:24629727-24629746 | None:intergenic | 50.0% | |
| CCCAATCTAGTGTGCTACCT+CGG | + | chr6.3:24629805-24629824 | None:intergenic | 50.0% | |
| CCCAGCTCAAGATCCTTACT+CGG | + | chr6.3:24629728-24629747 | None:intergenic | 50.0% | |
| CCGAGGTAGCACACTAGATT+GGG | - | chr6.3:24629802-24629821 | MS.gene74718:intron | 50.0% | |
| CCGAGTAAGGATCTTGAGCT+GGG | - | chr6.3:24629725-24629744 | MS.gene74718:intron | 50.0% | |
| CTCCCACGTTCCTGCAAAAA+AGG | - | chr6.3:24629562-24629581 | MS.gene74718:intron | 50.0% | |
| GAGAATCGACCCTAGCTAGA+AGG | - | chr6.3:24629306-24629325 | MS.gene74718:intron | 50.0% | |
| GCAAGGGAGAACATAACGTG+TGG | + | chr6.3:24629665-24629684 | None:intergenic | 50.0% | |
| GCACCAACACCTCTGATCAA+AGG | + | chr6.3:24628054-24628073 | None:intergenic | 50.0% | |
| GCCATGGTTCCTAATCAGGA+AGG | + | chr6.3:24629999-24630018 | None:intergenic | 50.0% | |
| GGTTGGGAATGTGATGTTGG+TGG | + | chr6.3:24627443-24627462 | None:intergenic | 50.0% | |
| GTACTTCACTCCCTGTAGTG+GGG | - | chr6.3:24629598-24629617 | MS.gene74718:intron | 50.0% | |
| TAATCGGTATAGCGCTGTCC+CGG | + | chr6.3:24629842-24629861 | None:intergenic | 50.0% | |
| TACTTCACTCCCTGTAGTGG+GGG | - | chr6.3:24629599-24629618 | MS.gene74718:intron | 50.0% | |
| TGACCCCACTTAGTGGGATA+AGG | - | chr6.3:24630338-24630357 | MS.gene74718:intron | 50.0% | |
| TGACTTAGATTGTGCTGCCG+AGG | - | chr6.3:24629785-24629804 | MS.gene74718:intron | 50.0% | |
| TGTGAGTGTCATGTCGGACA+TGG | - | chr6.3:24628022-24628041 | MS.gene74718:intron | 50.0% | |
| ! | AGCTAGGGTCGATTCTCCAA+TGG | + | chr6.3:24629303-24629322 | None:intergenic | 50.0% |
| ! | CCAAGCCTTATCCCACTAAG+TGG | + | chr6.3:24630346-24630365 | None:intergenic | 50.0% |
| ! | CCCTAGCTAGAAGGTATGCA+TGG | - | chr6.3:24629315-24629334 | MS.gene74718:intron | 50.0% |
| !! | CTGTCGGTCTTCTAGCTTGT+TGG | - | chr6.3:24630533-24630552 | MS.gene74718:intron | 50.0% |
| !!! | GCCCTTTTTTGCAGGAACGT+GGG | + | chr6.3:24629567-24629586 | None:intergenic | 50.0% |
| AACGAGCTACCCCCACTACA+GGG | + | chr6.3:24629611-24629630 | None:intergenic | 55.0% | |
| CACACTAGATTGGGCCCTCT+AGG | - | chr6.3:24629811-24629830 | MS.gene74718:intron | 55.0% | |
| CCCGAGTAAGGATCTTGAGC+TGG | - | chr6.3:24629724-24629743 | MS.gene74718:intron | 55.0% | |
| GCCGAGGTAGCACACTAGAT+TGG | - | chr6.3:24629801-24629820 | MS.gene74718:intron | 55.0% | |
| TAACGAGCTACCCCCACTAC+AGG | + | chr6.3:24629612-24629631 | None:intergenic | 55.0% | |
| !!! | GGCCCTTTTTTGCAGGAACG+TGG | + | chr6.3:24629568-24629587 | None:intergenic | 55.0% |
| CTAGATTGGGCCCTCTAGGC+TGG | - | chr6.3:24629815-24629834 | MS.gene74718:intron | 60.0% | |
| GGAACGTGGGAGCTTCCAAC+TGG | + | chr6.3:24629554-24629573 | None:intergenic | 60.0% | |
| TCCGGCCCCTTCATTAGGCT+CGG | + | chr6.3:24629703-24629722 | None:intergenic | 60.0% | |
| AAGGGGCCGGATCCCGAGTA+AGG | - | chr6.3:24629712-24629731 | MS.gene74718:intron | 65.0% | |
| CGGGATCCGGCCCCTTCATT+AGG | + | chr6.3:24629708-24629727 | None:intergenic | 65.0% | |
| CTGTCCCGGTCCAGCCTAGA+GGG | + | chr6.3:24629828-24629847 | None:intergenic | 65.0% | |
| GCCGAGCCTAATGAAGGGGC+CGG | - | chr6.3:24629699-24629718 | MS.gene74718:intron | 65.0% | |
| TTGGGCCCTCTAGGCTGGAC+CGG | - | chr6.3:24629820-24629839 | MS.gene74718:intron | 65.0% | |
| GCTGTCCCGGTCCAGCCTAG+AGG | + | chr6.3:24629829-24629848 | None:intergenic | 70.0% | |
| TGGGCCCTCTAGGCTGGACC+GGG | - | chr6.3:24629821-24629840 | MS.gene74718:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.3 | gene | 24627406 | 24631010 | 24627406 | ID=MS.gene74718 |
| chr6.3 | mRNA | 24627406 | 24631010 | 24627406 | ID=MS.gene74718.t1;Parent=MS.gene74718 |
| chr6.3 | exon | 24630610 | 24631010 | 24630610 | ID=MS.gene74718.t1.exon1;Parent=MS.gene74718.t1 |
| chr6.3 | CDS | 24630610 | 24631010 | 24630610 | ID=cds.MS.gene74718.t1;Parent=MS.gene74718.t1 |
| chr6.3 | exon | 24627406 | 24627511 | 24627406 | ID=MS.gene74718.t1.exon2;Parent=MS.gene74718.t1 |
| chr6.3 | CDS | 24627406 | 24627511 | 24627406 | ID=cds.MS.gene74718.t1;Parent=MS.gene74718.t1 |
| Gene Sequence |
| Protein sequence |
