AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene75201

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene75201.t1 MTR_1g109470 96.817 754 15 3 1 748 1 751 0.0 1449
MS.gene75201.t1 MTR_6g082400 37.147 778 304 33 14 748 4 639 1.64e-99 321
MS.gene75201.t1 MTR_8g106245 42.693 349 154 16 26 358 18 336 5.63e-53 193
MS.gene75201.t1 MTR_4g091530 47.959 196 89 6 24 216 6 191 2.99e-46 171
MS.gene75201.t1 MTR_2g010160 46.099 141 65 3 27 159 8 145 3.84e-32 130
MS.gene75201.t1 MTR_4g092850 47.143 140 61 5 27 159 9 142 1.50e-29 123
MS.gene75201.t1 MTR_2g461180 40.719 167 82 5 54 211 214 372 1.49e-26 117
MS.gene75201.t1 MTR_2g005700 35.669 157 74 4 53 194 11 155 6.60e-25 106
MS.gene75201.t1 MTR_4g116520 38.235 170 91 6 54 214 151 315 1.03e-24 111
MS.gene75201.t1 MTR_5g067120 47.826 115 52 4 51 162 23 132 6.57e-24 105
MS.gene75201.t1 MTR_6g033130 50.000 108 47 3 54 160 190 291 1.07e-22 104
MS.gene75201.t1 MTR_6g033130 50.000 108 47 3 54 160 190 291 1.09e-22 104
MS.gene75201.t1 MTR_5g067160 34.286 210 115 7 28 218 9 214 2.34e-21 97.8
MS.gene75201.t1 MTR_8g442400 42.857 105 55 2 55 159 179 278 1.84e-20 97.8
MS.gene75201.t1 MTR_5g488180 43.243 111 55 3 54 160 3 109 6.08e-20 89.7
MS.gene75201.t1 MTR_5g088090 43.243 111 55 3 54 160 3 109 6.08e-20 89.7
MS.gene75201.t1 MTR_5g088140 43.243 111 55 3 54 160 3 109 6.08e-20 89.7
MS.gene75201.t1 MTR_5g088120 42.342 111 56 3 54 160 3 109 1.60e-19 87.8
MS.gene75201.t1 MTR_5g488190 42.342 111 56 3 54 160 3 109 1.60e-19 87.8
MS.gene75201.t1 MTR_1g090020 42.857 105 55 2 54 158 193 292 1.67e-19 94.4
MS.gene75201.t1 MTR_5g032960 40.336 119 67 2 53 171 14 128 1.77e-19 88.2
MS.gene75201.t1 MTR_5g088590 42.342 111 56 3 54 160 3 109 1.91e-19 88.6
MS.gene75201.t1 MTR_4g105020 43.590 117 60 3 46 162 2 112 2.10e-19 87.0
MS.gene75201.t1 MTR_5g088040 41.593 113 54 4 54 160 3 109 4.23e-18 84.3
MS.gene75201.t1 MTR_5g088620 40.541 111 58 3 54 160 3 109 4.84e-18 84.3
MS.gene75201.t1 MTR_3g077030 40.833 120 65 3 52 171 6 119 9.86e-18 82.8
MS.gene75201.t1 MTR_4g128650 44.340 106 54 3 54 159 27 127 1.34e-15 81.6
MS.gene75201.t1 MTR_5g488200 45.882 85 42 2 76 160 183 263 3.14e-15 78.6
MS.gene75201.t1 MTR_5g067200 44.211 95 49 2 77 171 14 104 1.38e-14 72.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene75201.t1 AT2G01190 47.355 775 265 29 27 748 36 720 6.80e-155 467
MS.gene75201.t1 AT3G18230 41.441 444 192 13 32 465 38 423 9.13e-69 239
MS.gene75201.t1 AT4G05150 37.847 288 124 11 22 280 36 297 3.62e-39 152
MS.gene75201.t1 AT5G09620 50.676 148 62 4 27 166 8 152 2.54e-35 141
MS.gene75201.t1 AT5G09620 50.676 148 62 4 27 166 8 152 3.70e-35 140
MS.gene75201.t1 AT5G64430 48.993 149 59 4 27 161 8 153 1.99e-32 132
MS.gene75201.t1 AT1G25300 53.913 115 46 1 46 160 2 109 4.26e-32 126
MS.gene75201.t1 AT5G16220 48.462 130 56 3 35 162 19 139 6.93e-26 112
MS.gene75201.t1 AT5G49920 38.356 146 71 4 53 194 8 138 4.27e-25 106
MS.gene75201.t1 AT1G79570 35.882 170 93 5 51 220 173 326 1.56e-23 107
MS.gene75201.t1 AT3G46920 38.732 142 83 3 54 194 8 146 2.37e-23 106
MS.gene75201.t1 AT3G46920 38.732 142 83 3 54 194 74 212 2.55e-23 106
MS.gene75201.t1 AT1G79570 35.882 170 93 5 51 220 173 326 3.33e-23 106
MS.gene75201.t1 AT1G79570 35.882 170 93 5 51 220 173 326 3.33e-23 106
MS.gene75201.t1 AT1G79570 35.882 170 93 5 51 220 173 326 3.51e-23 106
MS.gene75201.t1 AT1G79570 35.882 170 93 5 51 220 173 326 3.51e-23 106
MS.gene75201.t1 AT1G04700 43.448 145 70 6 31 174 100 233 2.06e-22 103
MS.gene75201.t1 AT1G04700 47.934 121 53 5 55 174 122 233 2.81e-22 103
MS.gene75201.t1 AT1G04700 47.934 121 53 5 55 174 122 233 2.81e-22 103
MS.gene75201.t1 AT3G26510 40.769 130 68 3 50 174 5 130 4.62e-22 95.1
MS.gene75201.t1 AT3G26510 40.769 130 68 3 50 174 5 130 4.62e-22 95.1
MS.gene75201.t1 AT3G26510 40.769 130 68 3 50 174 5 130 4.62e-22 95.1
MS.gene75201.t1 AT3G26510 40.769 130 68 3 50 174 5 130 4.62e-22 95.1
MS.gene75201.t1 AT3G26510 40.769 130 68 3 50 174 5 130 4.62e-22 95.1
MS.gene75201.t1 AT3G26510 40.769 130 68 3 50 174 5 130 4.62e-22 95.1
MS.gene75201.t1 AT1G16270 44.444 108 55 2 52 159 162 264 6.16e-22 102
MS.gene75201.t1 AT1G16270 44.444 108 55 2 52 159 162 264 6.16e-22 102
MS.gene75201.t1 AT1G16270 44.444 108 55 2 52 159 162 264 6.16e-22 102
MS.gene75201.t1 AT3G24715 45.000 120 58 4 54 170 175 289 2.67e-21 100
MS.gene75201.t1 AT3G24715 45.000 120 58 4 54 170 175 289 2.67e-21 100
MS.gene75201.t1 AT3G24715 45.000 120 58 4 54 170 175 289 2.67e-21 100
MS.gene75201.t1 AT5G57610 38.849 139 79 4 54 192 23 155 3.19e-21 99.8
MS.gene75201.t1 AT2G35050 42.500 120 62 4 51 169 173 286 3.38e-21 100
MS.gene75201.t1 AT2G35050 42.500 120 62 4 51 169 173 286 3.38e-21 100
MS.gene75201.t1 AT1G70640 42.982 114 57 4 50 162 3 109 1.97e-19 87.0
MS.gene75201.t1 AT3G48240 43.103 116 57 2 53 168 12 118 6.15e-19 85.5
MS.gene75201.t1 AT5G63130 40.909 110 56 2 53 162 13 113 6.13e-14 71.6
MS.gene75201.t1 AT5G63130 40.909 110 56 2 53 162 13 113 6.13e-14 71.6

Find 223 sgRNAs with CRISPR-Local

Find 260 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGACGAAACGGCACCGTTTA+TGG 0.170692 1.3:-74482526 None:intergenic
GTTTCTCAACCTGGATCTTT+TGG 0.172762 1.3:+74482669 MS.gene75201:CDS
TTCTGTGCAGCAGGCTAATA+TGG 0.185433 1.3:+74483975 MS.gene75201:CDS
CCTTGTTGGGGCTGTCTTGC+AGG 0.210879 1.3:-74483943 None:intergenic
TGGCGAATTTGCCTCCTATT+AGG 0.214995 1.3:+74482790 MS.gene75201:CDS
ATGGTGGTTCTGGTGGTGTT+AGG 0.215415 1.3:+74482826 MS.gene75201:CDS
CTCTCCAAAACCTTGCTTAA+TGG 0.228074 1.3:+74482261 MS.gene75201:CDS
GACTTCTTCGTCTCCGTCTT+TGG 0.229377 1.3:+74482770 MS.gene75201:CDS
AGCAGCCGTCATTTCAGTTT+TGG 0.244960 1.3:-74484106 None:intergenic
GCAGCAGGATCAGAAGGTTT+TGG 0.258724 1.3:+74482887 MS.gene75201:CDS
GGCGAATTTGCCTCCTATTA+GGG 0.266693 1.3:+74482791 MS.gene75201:CDS
CTGGCAGGGGCAGCAGAATT+AGG 0.281688 1.3:-74484243 None:intergenic
AGAAATATTGTAACCTTGTT+GGG 0.287856 1.3:-74483956 None:intergenic
GGAATTGACTGAGCAGATTC+AGG 0.292958 1.3:-74482453 None:intergenic
TCTTCCATTAAGCAAGGTTT+TGG 0.293356 1.3:-74482265 None:intergenic
CTTCTCCTGATTCAGTTTCA+AGG 0.299311 1.3:+74483282 MS.gene75201:CDS
GTATCCACCCTTGTAGTTCC+AGG 0.300999 1.3:-74483601 None:intergenic
GGTTGACGGCGTTGGAGGTT+GGG 0.306728 1.3:-74481980 None:intergenic
CAAATTGTTGTTGCTGCTGC+TGG 0.308116 1.3:-74483714 None:intergenic
TCTTCAACATGCACCCTAAT+AGG 0.318542 1.3:-74482804 None:intergenic
ATGGAGACTTCTTCGTCCTT+TGG 0.332324 1.3:+74482744 MS.gene75201:CDS
AGCATATTCATAAGCATAAC+TGG 0.343168 1.3:-74484262 None:intergenic
GTCTCCATCATAGGCGAATC+AGG 0.346187 1.3:-74482729 None:intergenic
GGTAGGGGAGCACTTCTAAT+GGG 0.347012 1.3:-74484084 None:intergenic
CAAATGGTTGTTGGTGGTAT+TGG 0.347493 1.3:+74482930 MS.gene75201:CDS
GGGGAGGAATCAACGGAATC+GGG 0.352597 1.3:-74482051 None:intergenic
GTCCCATGAGTCGTTGTTGC+GGG 0.355446 1.3:-74482079 None:intergenic
CATGTTGAAGATGGTGGTTC+TGG 0.360128 1.3:+74482816 MS.gene75201:CDS
GGGTAGGGGAGCACTTCTAA+TGG 0.363591 1.3:-74484085 None:intergenic
ACTGAGACGGATGGTGGATC+TGG 0.365420 1.3:-74484212 None:intergenic
TAGTTGAGGTGTGGTGGTGG+TGG 0.370870 1.3:-74482027 None:intergenic
CGGTTGACGGCGTTGGAGGT+TGG 0.372039 1.3:-74481981 None:intergenic
ACTGCACATCAGACGGAGTT+TGG 0.374152 1.3:-74482124 None:intergenic
ATTGGTTCTGCTGTGGTTGT+TGG 0.379755 1.3:+74483041 MS.gene75201:CDS
TGATGAACAGTTTGCTCAAA+TGG 0.382086 1.3:+74482914 MS.gene75201:CDS
GGATAGTATGTAGGAATTGC+AGG 0.382162 1.3:-74483874 None:intergenic
CAGAAATATTGTAACCTTGT+TGG 0.382832 1.3:-74483957 None:intergenic
CAGCAGCAGCAGTTTATTCA+TGG 0.391314 1.3:+74483829 MS.gene75201:CDS
CATCAGAGAATACCCTATTC+TGG 0.394884 1.3:-74483070 None:intergenic
CCTGTACATGTTGCTGCACC+TGG 0.396429 1.3:-74483657 None:intergenic
GCGGCGGTTGGTGTTCCAAT+TGG 0.402499 1.3:+74483023 MS.gene75201:CDS
TGGTGGTTCTGGTGGTGTTA+GGG 0.407877 1.3:+74482827 MS.gene75201:CDS
GGATGCTGTGCAGGAACTTC+CGG 0.414421 1.3:-74484372 None:intergenic
TGCTGTTGATGCTGACTTGT+AGG 0.418339 1.3:-74484174 None:intergenic
TGTTGGTGATTACCAGAATA+GGG 0.419360 1.3:+74483058 MS.gene75201:CDS
CTCCGTCTGATGTGCAGTTA+CGG 0.420983 1.3:+74482129 MS.gene75201:CDS
TGTTCCTGATTCGCCTATGA+TGG 0.422549 1.3:+74482725 MS.gene75201:CDS
AACGAATCTAGGTCTTCGTT+TGG 0.425475 1.3:-74482312 None:intergenic
GGTCTTGATGATGATGTTGC+TGG 0.426742 1.3:+74482600 MS.gene75201:CDS
CCTGATGGTGTTTCTCAACC+TGG 0.431504 1.3:+74482660 MS.gene75201:CDS
GTTGACGGCGTTGGAGGTTG+GGG 0.431698 1.3:-74481979 None:intergenic
CAACCTCCAACGCCGTCAAC+CGG 0.431862 1.3:+74481982 MS.gene75201:CDS
AGGGGAGGAATCAACGGAAT+CGG 0.433576 1.3:-74482052 None:intergenic
GCAAACCTTGAAACTGAATC+AGG 0.434694 1.3:-74483287 None:intergenic
TTGTTGGTGATTACCAGAAT+AGG 0.438247 1.3:+74483057 MS.gene75201:CDS
GAGGCTGTTGTTGCTGCTGA+TGG 0.438597 1.3:-74483741 None:intergenic
CCAACCGCCGCCAGCGTAGT+TGG 0.439807 1.3:-74483011 None:intergenic
ACCTCGATTAAGCGACGAAA+CGG 0.444945 1.3:-74482538 None:intergenic
ATTTGCTCTTGATAAACAAC+AGG 0.445416 1.3:-74483568 None:intergenic
GACGTAACAGAGAGCTTTGT+CGG 0.447945 1.3:-74482175 None:intergenic
GCTGCTTACAGAGCTGCAAC+TGG 0.449004 1.3:+74484126 MS.gene75201:CDS
AGCTGCTACTATGATGCAAC+CGG 0.450983 1.3:+74484353 MS.gene75201:CDS
TCAAGCTCAGGCACAATCTC+AGG 0.452943 1.3:+74483184 MS.gene75201:CDS
CTCGATCCTACTGTTAGATC+CGG 0.457694 1.3:+74482486 MS.gene75201:CDS
TGATGGGGCTGTTGCTGTGA+TGG 0.459372 1.3:-74483904 None:intergenic
TAGTAGCAGCTGCCATGGTC+TGG 0.462175 1.3:-74484341 None:intergenic
CCGTCTGACGGATGCTGTGC+AGG 0.467762 1.3:-74484381 None:intergenic
TGGTTCTTTGATACCATAAA+CGG 0.472006 1.3:+74482513 MS.gene75201:CDS
TTACAATATTTCTGTGCAGC+AGG 0.475574 1.3:+74483966 MS.gene75201:CDS
GTAGGAACTTGCACAAATTG+AGG 0.475620 1.3:-74484156 None:intergenic
TGGACAGAGGCTACAGGATG+AGG 0.477050 1.3:+74482950 MS.gene75201:CDS
TAAATCTTCATCGGTTGAAA+CGG 0.478449 1.3:-74482340 None:intergenic
TGCGGCTGATGTTGAGGTTG+TGG 0.481004 1.3:-74483781 None:intergenic
GCCGCCAGCGTAGTTGGCAC+TGG 0.484966 1.3:-74483005 None:intergenic
CAGTTTGCTCAAATGGTTGT+TGG 0.485362 1.3:+74482921 MS.gene75201:CDS
ACAACCACAGCAGAACCAAT+TGG 0.486447 1.3:-74483038 None:intergenic
GGTCCGGTTGACGGCGTTGG+AGG 0.489230 1.3:-74481985 None:intergenic
TACATAGTAAACCTGGTGAT+GGG 0.489469 1.3:-74483920 None:intergenic
TTGGATGTGGCTGGAGGGAA+AGG 0.491131 1.3:-74482105 None:intergenic
TTACAATTCCCAAAAGATCC+AGG 0.491686 1.3:-74482678 None:intergenic
GCAGCAGCAGCAGGATCAGA+AGG 0.491807 1.3:+74482881 MS.gene75201:CDS
GGTGGTCCGGTTGACGGCGT+TGG 0.493691 1.3:-74481988 None:intergenic
GTGTGGTGGTGGTGGAGCCA+CGG 0.495167 1.3:-74482019 None:intergenic
GATAACGGTGGTCCGGTTGA+CGG 0.499187 1.3:-74481994 None:intergenic
GGGTAGTTGAGGTGTGGTGG+TGG 0.500900 1.3:-74482030 None:intergenic
TGAGAGTAGTATACTTGAGC+AGG 0.501127 1.3:-74484288 None:intergenic
CGATCCACATGGTAGGATCC+AGG 0.502009 1.3:+74483639 MS.gene75201:CDS
GGTGGAGCCACGGAGGATAA+CGG 0.503298 1.3:-74482009 None:intergenic
TGCTGCTTCATGCCGTCTGA+CGG 0.504939 1.3:-74484393 None:intergenic
TGTTGCTGTGATGGATATAC+AGG 0.506750 1.3:-74483895 None:intergenic
CACGGAGGATAACGGTGGTC+CGG 0.508705 1.3:-74482001 None:intergenic
GACGAAGAAGTCTCCATCAT+AGG 0.509913 1.3:-74482738 None:intergenic
GAATTGTAAGAATTTGAAGC+AGG 0.512443 1.3:+74482692 MS.gene75201:CDS
AAAGTCAAGTGGCGGTGGCT+CGG 0.513401 1.3:+74483253 MS.gene75201:CDS
CATATTGAACAAGGTTCCAC+TGG 0.513758 1.3:+74482630 MS.gene75201:CDS
TGGTACTGTGAAGGCATTGT+GGG 0.515032 1.3:-74484321 None:intergenic
CAGCAACATGTACAGGATCC+TGG 0.517129 1.3:+74483664 MS.gene75201:CDS
CTGAGACGGATGGTGGATCT+GGG 0.517543 1.3:-74484211 None:intergenic
ACCTGTGGCTGAGGAGTTGG+TGG 0.517587 1.3:-74483134 None:intergenic
TCGGGGTAGTTGAGGTGTGG+TGG 0.520239 1.3:-74482033 None:intergenic
GTAGTTGGCACTGGAGGATG+AGG 0.520654 1.3:-74482996 None:intergenic
AGCAGCAGCAGTTTATTCAT+GGG 0.521183 1.3:+74483830 MS.gene75201:CDS
CCAACTACGCTGGCGGCGGT+TGG 0.521638 1.3:+74483011 MS.gene75201:CDS
TATTCATAAGCATAACTGGC+AGG 0.521937 1.3:-74484258 None:intergenic
TGCTGCTGCGGCTGATGTTG+AGG 0.522699 1.3:-74483787 None:intergenic
TTGTTGAACCAATGTGGTGG+GGG 0.524626 1.3:-74484046 None:intergenic
CCAGGTGCAGCAACATGTAC+AGG 0.525477 1.3:+74483657 MS.gene75201:CDS
TCAAGCTCAAAATCAAGCTC+AGG 0.526325 1.3:+74483172 MS.gene75201:CDS
GGCAGCAGAATTAGGAGCCA+TGG 0.527937 1.3:-74484235 None:intergenic
AGACGGAGTTTGGATGTGGC+TGG 0.531377 1.3:-74482114 None:intergenic
GAAGGCATTGTGGGCGCCAT+AGG 0.531634 1.3:-74484312 None:intergenic
CAACAAAAGTCAAGTGGCGG+TGG 0.531834 1.3:+74483248 MS.gene75201:CDS
GTTCCCGCAACAACGACTCA+TGG 0.532318 1.3:+74482076 MS.gene75201:CDS
AGCTGATACTTGAAAGTGAA+AGG 0.533088 1.3:-74482288 None:intergenic
TAACAGAGAGCTTTGTCGGT+TGG 0.534354 1.3:-74482171 None:intergenic
TTTGTTGAACCAATGTGGTG+GGG 0.535933 1.3:-74484047 None:intergenic
CCACCATCCGTCTCAGTCCA+TGG 0.536469 1.3:+74484218 MS.gene75201:CDS
AGAGCTTTGTCGGTTGGACG+AGG 0.539750 1.3:-74482165 None:intergenic
AGTATACTACTCTCAGCCTA+TGG 0.542313 1.3:+74484296 MS.gene75201:CDS
CGTCCCATGAGTCGTTGTTG+CGG 0.542603 1.3:-74482080 None:intergenic
AGTGCCAACTACGCTGGCGG+CGG 0.544621 1.3:+74483007 MS.gene75201:CDS
AAATTCAACCTGGAACTACA+AGG 0.546548 1.3:+74483593 MS.gene75201:CDS
TGGTATTGGACAGAGGCTAC+AGG 0.548332 1.3:+74482944 MS.gene75201:CDS
CGCCGTAACTGCACATCAGA+CGG 0.548433 1.3:-74482131 None:intergenic
GAAAGGTCTTCCATTAAGCA+AGG 0.551628 1.3:-74482271 None:intergenic
CATCATAGTAGCAGCTGCCA+TGG 0.552855 1.3:-74484346 None:intergenic
TGAGCAGATTCAGGTTTCGA+TGG 0.553906 1.3:-74482444 None:intergenic
CCAGGTTGAGAAACACCATC+AGG 0.555428 1.3:-74482660 None:intergenic
GTAGGGGAGCACTTCTAATG+GGG 0.555535 1.3:-74484083 None:intergenic
ACCACCAACTCCTCAGCCAC+AGG 0.556074 1.3:+74483133 MS.gene75201:CDS
TCTGTGCAGCAGGCTAATAT+GGG 0.556647 1.3:+74483976 MS.gene75201:CDS
GGAACGAGGGGAGGAATCAA+CGG 0.556888 1.3:-74482058 None:intergenic
CAACGGAATCGGGGTAGTTG+AGG 0.557276 1.3:-74482041 None:intergenic
ATTCTCTGATGATGAGAGAT+CGG 0.557288 1.3:+74483082 MS.gene75201:CDS
GGATATACAGGATAGTATGT+AGG 0.557743 1.3:-74483883 None:intergenic
TCCTCCAGTGCCAACTACGC+TGG 0.559724 1.3:+74483001 MS.gene75201:CDS
GACAAAGCTCTCTGTTACGT+CGG 0.560297 1.3:+74482177 MS.gene75201:CDS
TGCTGTTGCAGCAAATAACC+AGG 0.561601 1.3:-74483682 None:intergenic
CTACTGTTAGATCCGGTGAA+TGG 0.563307 1.3:+74482493 MS.gene75201:CDS
GGACAGAGGCTACAGGATGA+GGG 0.567639 1.3:+74482951 MS.gene75201:CDS
GGTTGCTGCGGCTGATGTTG+AGG 0.576485 1.3:-74483760 None:intergenic
GTCTTGATGATGATGTTGCT+GGG 0.576576 1.3:+74482601 MS.gene75201:CDS
GTTGAAGATGGTGGTTCTGG+TGG 0.576663 1.3:+74482819 MS.gene75201:CDS
TTTGCTCAAATGGTTGTTGG+TGG 0.576841 1.3:+74482924 MS.gene75201:CDS
AAACGGAGATTAACGAATCT+AGG 0.578203 1.3:-74482323 None:intergenic
ACAACCTGTGGCTGAGGAGT+TGG 0.580416 1.3:-74483137 None:intergenic
GGATAAATCCGCGAGTGAGG+TGG 0.580510 1.3:-74482232 None:intergenic
ACTTGAACAACCTGTGGCTG+AGG 0.580822 1.3:-74483143 None:intergenic
GCCGTTTCGTCGCTTAATCG+AGG 0.581594 1.3:+74482537 MS.gene75201:CDS
GTACATAGTAAACCTGGTGA+TGG 0.582079 1.3:-74483921 None:intergenic
CCATGGACTGAGACGGATGG+TGG 0.582286 1.3:-74484218 None:intergenic
ATTAGGGTGCATGTTGAAGA+TGG 0.582359 1.3:+74482807 MS.gene75201:CDS
GAAATATTGTAACCTTGTTG+GGG 0.583775 1.3:-74483955 None:intergenic
GAGTCGTTGTTGCGGGAACG+AGG 0.584939 1.3:-74482072 None:intergenic
TTCCCGCAACAACGACTCAT+GGG 0.585174 1.3:+74482077 MS.gene75201:CDS
GTCGTTGTTGCGGGAACGAG+GGG 0.585961 1.3:-74482070 None:intergenic
ATCGGATCATGGTGTGCCTG+TGG 0.586106 1.3:+74483100 MS.gene75201:CDS
ATTCATAAGCATAACTGGCA+GGG 0.588015 1.3:-74484257 None:intergenic
GGAGGCAAATTCGCCAAAGA+CGG 0.588179 1.3:-74482783 None:intergenic
CCTACCCAAAACTGAAATGA+CGG 0.588235 1.3:+74484101 MS.gene75201:CDS
TTCATAAGCATAACTGGCAG+GGG 0.590768 1.3:-74484256 None:intergenic
TCCACTGGAGAAGCTCCTGA+TGG 0.593224 1.3:+74482645 MS.gene75201:CDS
TGAAGCTGTTGTTGCTGCTG+CGG 0.593547 1.3:-74483799 None:intergenic
TGTTCCAATTGGTTCTGCTG+TGG 0.593696 1.3:+74483034 MS.gene75201:CDS
AGACGAAGAAGTCGAACCAA+AGG 0.594657 1.3:-74482760 None:intergenic
ACAGCAACAGCCCCATCACC+AGG 0.596464 1.3:+74483909 MS.gene75201:CDS
CGGAGTTTGGATGTGGCTGG+AGG 0.598235 1.3:-74482111 None:intergenic
TGAACGCGCCACCTCACTCG+CGG 0.598732 1.3:+74482224 MS.gene75201:CDS
AGTCGTTGTTGCGGGAACGA+GGG 0.600229 1.3:-74482071 None:intergenic
GCCAGCGTAGTTGGCACTGG+AGG 0.600507 1.3:-74483002 None:intergenic
ACATAGTAAACCTGGTGATG+GGG 0.601720 1.3:-74483919 None:intergenic
CATCAGACGGAGTTTGGATG+TGG 0.601884 1.3:-74482118 None:intergenic
GCAGCAGCAGTTTATTCATG+GGG 0.604368 1.3:+74483831 MS.gene75201:CDS
GTTGTTGCGGGAACGAGGGG+AGG 0.604508 1.3:-74482067 None:intergenic
CTTGAAACTGAATCAGGAGA+AGG 0.605496 1.3:-74483281 None:intergenic
CTGGTACTGTGAAGGCATTG+TGG 0.606843 1.3:-74484322 None:intergenic
GATGATGAGAGATCGGATCA+TGG 0.609090 1.3:+74483089 MS.gene75201:CDS
CTGGATCCTACCATGTGGAT+CGG 0.610151 1.3:-74483638 None:intergenic
GGAGTTTGGATGTGGCTGGA+GGG 0.611331 1.3:-74482110 None:intergenic
TTGCAGGTACATAGTAAACC+TGG 0.612429 1.3:-74483927 None:intergenic
CCTGCACAGCATCCGTCAGA+CGG 0.613220 1.3:+74484381 MS.gene75201:CDS
CGTGGATAAATCCGCGAGTG+AGG 0.614369 1.3:-74482235 None:intergenic
GATAGTATGTAGGAATTGCA+GGG 0.616127 1.3:-74483873 None:intergenic
GGGAGGAATCAACGGAATCG+GGG 0.618967 1.3:-74482050 None:intergenic
GGTATCAAAGAACCATTCAC+CGG 0.620315 1.3:-74482505 None:intergenic
ATCAATTTGTCCGATCCACA+TGG 0.621127 1.3:+74483628 MS.gene75201:CDS
TCGGATCATGGTGTGCCTGT+GGG 0.622213 1.3:+74483101 MS.gene75201:CDS
GGGAATAATCATATTGAACA+AGG 0.623357 1.3:+74482621 MS.gene75201:CDS
TCAACATGCACCCTAATAGG+AGG 0.625269 1.3:-74482801 None:intergenic
CATTCACCGGATCTAACAGT+AGG 0.628644 1.3:-74482492 None:intergenic
GAGCAAATTCAAATTCAACC+TGG 0.628952 1.3:+74483583 MS.gene75201:CDS
ACAGTAGGATCGAGAATTTG+CGG 0.630234 1.3:-74482477 None:intergenic
TCCAGTGCCAACTACGCTGG+CGG 0.630709 1.3:+74483004 MS.gene75201:CDS
AAAGCTCTCTGTTACGTCGG+TGG 0.631441 1.3:+74482180 MS.gene75201:CDS
GCCATGGTCTGGTACTGTGA+AGG 0.631831 1.3:-74484330 None:intergenic
TTAGGAGCCATGGACTGAGA+CGG 0.636364 1.3:-74484225 None:intergenic
CCTGCAAGACAGCCCCAACA+AGG 0.639304 1.3:+74483943 MS.gene75201:CDS
ACCATCAGGAGCTTCTCCAG+TGG 0.641015 1.3:-74482646 None:intergenic
ATTTGTCCGATCCACATGGT+AGG 0.641689 1.3:+74483632 MS.gene75201:CDS
GCTTACAGAGCTGCAACTGG+AGG 0.643603 1.3:+74484129 MS.gene75201:CDS
TGGTGGTGGTGGAGCCACGG+AGG 0.644740 1.3:-74482016 None:intergenic
CAATTTCAACAAAAGTCAAG+TGG 0.647060 1.3:+74483242 MS.gene75201:CDS
GAGCTTTGTCGGTTGGACGA+GGG 0.650315 1.3:-74482164 None:intergenic
TCAACCTGGAACTACAAGGG+TGG 0.652554 1.3:+74483597 MS.gene75201:CDS
CGGTTGGACGAGGGACGATG+TGG 0.660936 1.3:-74482155 None:intergenic
TCTGCTAGAAGGGATTGTTG+TGG 0.662115 1.3:-74484007 None:intergenic
GTTGGCACTGGAGGATGAGG+CGG 0.662967 1.3:-74482993 None:intergenic
GGTTGAACTTGAACAACCTG+TGG 0.669833 1.3:-74483149 None:intergenic
GAATCGGGGTAGTTGAGGTG+TGG 0.676463 1.3:-74482036 None:intergenic
GAGCCATGGACTGAGACGGA+TGG 0.677383 1.3:-74484221 None:intergenic
TTTCAACAAAAGTCAAGTGG+CGG 0.678298 1.3:+74483245 MS.gene75201:CDS
AATTCAACCTGGAACTACAA+GGG 0.679111 1.3:+74483594 MS.gene75201:CDS
AGGGTGCATGTTGAAGATGG+TGG 0.679137 1.3:+74482810 MS.gene75201:CDS
TGTTGAGGTTGTGGTTGCTG+CGG 0.693955 1.3:-74483772 None:intergenic
CGGACCACCGTTATCCTCCG+TGG 0.696266 1.3:+74482002 MS.gene75201:CDS
CAGCAGCAGTTTATTCATGG+GGG 0.698822 1.3:+74483832 MS.gene75201:CDS
GCCTTCACAGTACCAGACCA+TGG 0.702903 1.3:+74484329 MS.gene75201:CDS
GTAGGATCGAGAATTTGCGG+TGG 0.710077 1.3:-74482474 None:intergenic
CGTCTGATGTGCAGTTACGG+CGG 0.713858 1.3:+74482132 MS.gene75201:CDS
TTGTTGGTGGTATTGGACAG+AGG 0.725008 1.3:+74482937 MS.gene75201:CDS
ACTTGCTTATAGTGGCTGTG+AGG 0.735355 1.3:-74484424 None:intergenic
GGAGCCACGGAGGATAACGG+TGG 0.735804 1.3:-74482006 None:intergenic
TGCACCTGGATCCTACCATG+TGG 0.740835 1.3:-74483643 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTAATGTTTGTTTACAT+AGG + chr1.3:74483371-74483390 MS.gene75201:intron 15.0%
!! AAAACAAGAATTACAAAAAC+AGG - chr1.3:74483332-74483351 None:intergenic 20.0%
!!! CTTGTTTTATATTTGTGATA+TGG + chr1.3:74483344-74483363 MS.gene75201:intron 20.0%
! AGAAATATTGTAACCTTGTT+GGG - chr1.3:74483959-74483978 None:intergenic 25.0%
! GAATTACAAAAACAGGTAAA+TGG - chr1.3:74483325-74483344 None:intergenic 25.0%
! TGATTATTATAAACCTAGAG+TGG + chr1.3:74483456-74483475 MS.gene75201:intron 25.0%
!! CATGTTTTCTAAATCTTCAT+CGG - chr1.3:74482352-74482371 None:intergenic 25.0%
AGCATATTCATAAGCATAAC+TGG - chr1.3:74484265-74484284 None:intergenic 30.0%
ATTTGCTCTTGATAAACAAC+AGG - chr1.3:74483571-74483590 None:intergenic 30.0%
CAATTTCAACAAAAGTCAAG+TGG + chr1.3:74483242-74483261 MS.gene75201:CDS 30.0%
CAGAAATATTGTAACCTTGT+TGG - chr1.3:74483960-74483979 None:intergenic 30.0%
GAAATATTGTAACCTTGTTG+GGG - chr1.3:74483958-74483977 None:intergenic 30.0%
GGGAATAATCATATTGAACA+AGG + chr1.3:74482621-74482640 MS.gene75201:CDS 30.0%
TGGTTCTTTGATACCATAAA+CGG + chr1.3:74482513-74482532 MS.gene75201:CDS 30.0%
TTATTATAAACCTAGAGTGG+TGG + chr1.3:74483459-74483478 MS.gene75201:intron 30.0%
! CTTGACTTTTGTTGAAATTG+AGG - chr1.3:74483242-74483261 None:intergenic 30.0%
! GAATTGTAAGAATTTGAAGC+AGG + chr1.3:74482692-74482711 MS.gene75201:CDS 30.0%
! GGTTTAGCAATATCTGAAAT+AGG + chr1.3:74483480-74483499 MS.gene75201:intron 30.0%
! TAAATCTTCATCGGTTGAAA+CGG - chr1.3:74482343-74482362 None:intergenic 30.0%
! TCTTCTGTGAATCATCTTTT+AGG + chr1.3:74482579-74482598 MS.gene75201:CDS 30.0%
AAACGGAGATTAACGAATCT+AGG - chr1.3:74482326-74482345 None:intergenic 35.0%
AAATTCAACCTGGAACTACA+AGG + chr1.3:74483593-74483612 MS.gene75201:CDS 35.0%
AATTCAACCTGGAACTACAA+GGG + chr1.3:74483594-74483613 MS.gene75201:CDS 35.0%
AGCTGATACTTGAAAGTGAA+AGG - chr1.3:74482291-74482310 None:intergenic 35.0%
ATTCATAAGCATAACTGGCA+GGG - chr1.3:74484260-74484279 None:intergenic 35.0%
GAGCAAATTCAAATTCAACC+TGG + chr1.3:74483583-74483602 MS.gene75201:CDS 35.0%
GATAGTATGTAGGAATTGCA+GGG - chr1.3:74483876-74483895 None:intergenic 35.0%
GGATATACAGGATAGTATGT+AGG - chr1.3:74483886-74483905 None:intergenic 35.0%
TACATAGTAAACCTGGTGAT+GGG - chr1.3:74483923-74483942 None:intergenic 35.0%
TATTCATAAGCATAACTGGC+AGG - chr1.3:74484261-74484280 None:intergenic 35.0%
TTACAATTCCCAAAAGATCC+AGG - chr1.3:74482681-74482700 None:intergenic 35.0%
TTTCAACAAAAGTCAAGTGG+CGG + chr1.3:74483245-74483264 MS.gene75201:CDS 35.0%
! ATTCTCTGATGATGAGAGAT+CGG + chr1.3:74483082-74483101 MS.gene75201:CDS 35.0%
! ATTTTGTTGAACCAATGTGG+TGG - chr1.3:74484052-74484071 None:intergenic 35.0%
! CAATATCTGAAATAGGCTGT+TGG + chr1.3:74483487-74483506 MS.gene75201:intron 35.0%
! TCTTCCATTAAGCAAGGTTT+TGG - chr1.3:74482268-74482287 None:intergenic 35.0%
! TGATGAACAGTTTGCTCAAA+TGG + chr1.3:74482914-74482933 MS.gene75201:CDS 35.0%
! TGCATTTTGTTGAACCAATG+TGG - chr1.3:74484055-74484074 None:intergenic 35.0%
! TTACAATATTTCTGTGCAGC+AGG + chr1.3:74483966-74483985 MS.gene75201:CDS 35.0%
! TTTCTCAACCTGGATCTTTT+GGG + chr1.3:74482670-74482689 MS.gene75201:CDS 35.0%
! TTTTGTTGAACCAATGTGGT+GGG - chr1.3:74484051-74484070 None:intergenic 35.0%
!! TGTTGGTGATTACCAGAATA+GGG + chr1.3:74483058-74483077 MS.gene75201:CDS 35.0%
!! TTGTTGGTGATTACCAGAAT+AGG + chr1.3:74483057-74483076 MS.gene75201:CDS 35.0%
AACGAATCTAGGTCTTCGTT+TGG - chr1.3:74482315-74482334 None:intergenic 40.0%
ACAGTAGGATCGAGAATTTG+CGG - chr1.3:74482480-74482499 None:intergenic 40.0%
AGAAAAAGACGAATTCGCGA+GGG - chr1.3:74482420-74482439 None:intergenic 40.0%
AGCAGCAGCAGTTTATTCAT+GGG + chr1.3:74483830-74483849 MS.gene75201:CDS 40.0%
AGTATACTACTCTCAGCCTA+TGG + chr1.3:74484296-74484315 MS.gene75201:CDS 40.0%
ATCAATTTGTCCGATCCACA+TGG + chr1.3:74483628-74483647 MS.gene75201:CDS 40.0%
ATTAGGGTGCATGTTGAAGA+TGG + chr1.3:74482807-74482826 MS.gene75201:CDS 40.0%
CATATTGAACAAGGTTCCAC+TGG + chr1.3:74482630-74482649 MS.gene75201:CDS 40.0%
CATCAGAGAATACCCTATTC+TGG - chr1.3:74483073-74483092 None:intergenic 40.0%
CCTACCCAAAACTGAAATGA+CGG + chr1.3:74484101-74484120 MS.gene75201:CDS 40.0%
CTCTCCAAAACCTTGCTTAA+TGG + chr1.3:74482261-74482280 MS.gene75201:CDS 40.0%
CTTCTCCTGATTCAGTTTCA+AGG + chr1.3:74483282-74483301 MS.gene75201:CDS 40.0%
CTTGAAACTGAATCAGGAGA+AGG - chr1.3:74483284-74483303 None:intergenic 40.0%
GAAAGGTCTTCCATTAAGCA+AGG - chr1.3:74482274-74482293 None:intergenic 40.0%
GCAAACCTTGAAACTGAATC+AGG - chr1.3:74483290-74483309 None:intergenic 40.0%
GGATAGTATGTAGGAATTGC+AGG - chr1.3:74483877-74483896 None:intergenic 40.0%
GGTATCAAAGAACCATTCAC+CGG - chr1.3:74482508-74482527 None:intergenic 40.0%
GTACATAGTAAACCTGGTGA+TGG - chr1.3:74483924-74483943 None:intergenic 40.0%
GTAGGAACTTGCACAAATTG+AGG - chr1.3:74484159-74484178 None:intergenic 40.0%
TATTGCTAAACCACCACTCT+AGG - chr1.3:74483472-74483491 None:intergenic 40.0%
TCAAGCTCAAAATCAAGCTC+AGG + chr1.3:74483172-74483191 MS.gene75201:CDS 40.0%
TCTTCAACATGCACCCTAAT+AGG - chr1.3:74482807-74482826 None:intergenic 40.0%
TGAGAGTAGTATACTTGAGC+AGG - chr1.3:74484291-74484310 None:intergenic 40.0%
TTCATAAGCATAACTGGCAG+GGG - chr1.3:74484259-74484278 None:intergenic 40.0%
TTGCAGGTACATAGTAAACC+TGG - chr1.3:74483930-74483949 None:intergenic 40.0%
TTTGCTCAAATGGTTGTTGG+TGG + chr1.3:74482924-74482943 MS.gene75201:CDS 40.0%
TTTGTTGAACCAATGTGGTG+GGG - chr1.3:74484050-74484069 None:intergenic 40.0%
! ACATAGTAAACCTGGTGATG+GGG - chr1.3:74483922-74483941 None:intergenic 40.0%
! CAGTTTGCTCAAATGGTTGT+TGG + chr1.3:74482921-74482940 MS.gene75201:CDS 40.0%
! GTTTCTCAACCTGGATCTTT+TGG + chr1.3:74482669-74482688 MS.gene75201:CDS 40.0%
! TATCTGAAATAGGCTGTTGG+TGG + chr1.3:74483490-74483509 MS.gene75201:intron 40.0%
! TGAGCTTGATTTTGAGCTTG+AGG - chr1.3:74483173-74483192 None:intergenic 40.0%
!! CAAATGGTTGTTGGTGGTAT+TGG + chr1.3:74482930-74482949 MS.gene75201:CDS 40.0%
!! GTCTTGATGATGATGTTGCT+GGG + chr1.3:74482601-74482620 MS.gene75201:CDS 40.0%
!! TGTTGCTGTGATGGATATAC+AGG - chr1.3:74483898-74483917 None:intergenic 40.0%
!!! CATTAAGCAAGGTTTTGGAG+AGG - chr1.3:74482263-74482282 None:intergenic 40.0%
!!! CGTCATTTCAGTTTTGGGTA+GGG - chr1.3:74484103-74484122 None:intergenic 40.0%
!!! GTCATTTCAGTTTTGGGTAG+GGG - chr1.3:74484102-74484121 None:intergenic 40.0%
ACAACCACAGCAGAACCAAT+TGG - chr1.3:74483041-74483060 None:intergenic 45.0%
ACCTCGATTAAGCGACGAAA+CGG - chr1.3:74482541-74482560 None:intergenic 45.0%
AGACGAAGAAGTCGAACCAA+AGG - chr1.3:74482763-74482782 None:intergenic 45.0%
AGCTGCTACTATGATGCAAC+CGG + chr1.3:74484353-74484372 MS.gene75201:CDS 45.0%
ATGGAGACTTCTTCGTCCTT+TGG + chr1.3:74482744-74482763 MS.gene75201:CDS 45.0%
ATTTGTCCGATCCACATGGT+AGG + chr1.3:74483632-74483651 MS.gene75201:CDS 45.0%
CAGAAAAAGACGAATTCGCG+AGG - chr1.3:74482421-74482440 None:intergenic 45.0%
CAGCAGCAGCAGTTTATTCA+TGG + chr1.3:74483829-74483848 MS.gene75201:CDS 45.0%
CAGCAGCAGTTTATTCATGG+GGG + chr1.3:74483832-74483851 MS.gene75201:CDS 45.0%
CATTCACCGGATCTAACAGT+AGG - chr1.3:74482495-74482514 None:intergenic 45.0%
CTACTGTTAGATCCGGTGAA+TGG + chr1.3:74482493-74482512 MS.gene75201:CDS 45.0%
CTCGATCCTACTGTTAGATC+CGG + chr1.3:74482486-74482505 MS.gene75201:CDS 45.0%
GACAAAGCTCTCTGTTACGT+CGG + chr1.3:74482177-74482196 MS.gene75201:CDS 45.0%
GACGAAGAAGTCTCCATCAT+AGG - chr1.3:74482741-74482760 None:intergenic 45.0%
GATGATGAGAGATCGGATCA+TGG + chr1.3:74483089-74483108 MS.gene75201:CDS 45.0%
GCAGCAGCAGTTTATTCATG+GGG + chr1.3:74483831-74483850 MS.gene75201:CDS 45.0%
GGAATTGACTGAGCAGATTC+AGG - chr1.3:74482456-74482475 None:intergenic 45.0%
GGCGAATTTGCCTCCTATTA+GGG + chr1.3:74482791-74482810 MS.gene75201:CDS 45.0%
GGTTGAACTTGAACAACCTG+TGG - chr1.3:74483152-74483171 None:intergenic 45.0%
TCAACATGCACCCTAATAGG+AGG - chr1.3:74482804-74482823 None:intergenic 45.0%
TCTGCTAGAAGGGATTGTTG+TGG - chr1.3:74484010-74484029 None:intergenic 45.0%
TCTGTGCAGCAGGCTAATAT+GGG + chr1.3:74483976-74483995 MS.gene75201:CDS 45.0%
TGCTGTTGCAGCAAATAACC+AGG - chr1.3:74483685-74483704 None:intergenic 45.0%
TGGCGAATTTGCCTCCTATT+AGG + chr1.3:74482790-74482809 MS.gene75201:CDS 45.0%
TTCTGTGCAGCAGGCTAATA+TGG + chr1.3:74483975-74483994 MS.gene75201:CDS 45.0%
TTGTTGAACCAATGTGGTGG+GGG - chr1.3:74484049-74484068 None:intergenic 45.0%
! AGCAGCCGTCATTTCAGTTT+TGG - chr1.3:74484109-74484128 None:intergenic 45.0%
! AGCAGGATCAGAAGGTTTTG+GGG + chr1.3:74482889-74482908 MS.gene75201:CDS 45.0%
! CAAATTGTTGTTGCTGCTGC+TGG - chr1.3:74483717-74483736 None:intergenic 45.0%
! CAGCAGGATCAGAAGGTTTT+GGG + chr1.3:74482888-74482907 MS.gene75201:CDS 45.0%
! CATGTTGAAGATGGTGGTTC+TGG + chr1.3:74482816-74482835 MS.gene75201:CDS 45.0%
! GACGTAACAGAGAGCTTTGT+CGG - chr1.3:74482178-74482197 None:intergenic 45.0%
! GCAGCCGTCATTTCAGTTTT+GGG - chr1.3:74484108-74484127 None:intergenic 45.0%
! GGTGGTTTTCTATATCCCAC+AGG - chr1.3:74483119-74483138 None:intergenic 45.0%
! TAACAGAGAGCTTTGTCGGT+TGG - chr1.3:74482174-74482193 None:intergenic 45.0%
! TGAGCAGATTCAGGTTTCGA+TGG - chr1.3:74482447-74482466 None:intergenic 45.0%
! TGTTCCTGATTCGCCTATGA+TGG + chr1.3:74482725-74482744 MS.gene75201:CDS 45.0%
!! ATTGGTTCTGCTGTGGTTGT+TGG + chr1.3:74483041-74483060 MS.gene75201:CDS 45.0%
!! GGTCTTGATGATGATGTTGC+TGG + chr1.3:74482600-74482619 MS.gene75201:CDS 45.0%
!! TGCTGTTGATGCTGACTTGT+AGG - chr1.3:74484177-74484196 None:intergenic 45.0%
!! TGGTACTGTGAAGGCATTGT+GGG - chr1.3:74484324-74484343 None:intergenic 45.0%
!! TGTTCCAATTGGTTCTGCTG+TGG + chr1.3:74483034-74483053 MS.gene75201:CDS 45.0%
!! TTGTTGGTGGTATTGGACAG+AGG + chr1.3:74482937-74482956 MS.gene75201:CDS 45.0%
!!! CCGTCATTTCAGTTTTGGGT+AGG - chr1.3:74484104-74484123 None:intergenic 45.0%
!!! GATTTTGGGGTCTGCTAGAA+GGG - chr1.3:74484020-74484039 None:intergenic 45.0%
AAAGCTCTCTGTTACGTCGG+TGG + chr1.3:74482180-74482199 MS.gene75201:CDS 50.0%
ACTGCACATCAGACGGAGTT+TGG - chr1.3:74482127-74482146 None:intergenic 50.0%
ACTTGAACAACCTGTGGCTG+AGG - chr1.3:74483146-74483165 None:intergenic 50.0%
AGGGGAGGAATCAACGGAAT+CGG - chr1.3:74482055-74482074 None:intergenic 50.0%
AGGGTGCATGTTGAAGATGG+TGG + chr1.3:74482810-74482829 MS.gene75201:CDS 50.0%
CAACAAAAGTCAAGTGGCGG+TGG + chr1.3:74483248-74483267 MS.gene75201:CDS 50.0%
CAGCAACATGTACAGGATCC+TGG + chr1.3:74483664-74483683 MS.gene75201:CDS 50.0%
CATCAGACGGAGTTTGGATG+TGG - chr1.3:74482121-74482140 None:intergenic 50.0%
CATCATAGTAGCAGCTGCCA+TGG - chr1.3:74484349-74484368 None:intergenic 50.0%
CTCCGTCTGATGTGCAGTTA+CGG + chr1.3:74482129-74482148 MS.gene75201:CDS 50.0%
CTGGATCCTACCATGTGGAT+CGG - chr1.3:74483641-74483660 None:intergenic 50.0%
GACTTCTTCGTCTCCGTCTT+TGG + chr1.3:74482770-74482789 MS.gene75201:CDS 50.0%
GGAGGCAAATTCGCCAAAGA+CGG - chr1.3:74482786-74482805 None:intergenic 50.0%
GTAGGATCGAGAATTTGCGG+TGG - chr1.3:74482477-74482496 None:intergenic 50.0%
GTATCCACCCTTGTAGTTCC+AGG - chr1.3:74483604-74483623 None:intergenic 50.0%
GTCTCCATCATAGGCGAATC+AGG - chr1.3:74482732-74482751 None:intergenic 50.0%
TCAACCTGGAACTACAAGGG+TGG + chr1.3:74483597-74483616 MS.gene75201:CDS 50.0%
TCAAGCTCAGGCACAATCTC+AGG + chr1.3:74483184-74483203 MS.gene75201:CDS 50.0%
TGAAGCTGTTGTTGCTGCTG+CGG - chr1.3:74483802-74483821 None:intergenic 50.0%
TGTTGAGGTTGTGGTTGCTG+CGG - chr1.3:74483775-74483794 None:intergenic 50.0%
TTCCCGCAACAACGACTCAT+GGG + chr1.3:74482077-74482096 MS.gene75201:CDS 50.0%
! CCAGGTTGAGAAACACCATC+AGG - chr1.3:74482663-74482682 None:intergenic 50.0%
! CCTGATGGTGTTTCTCAACC+TGG + chr1.3:74482660-74482679 MS.gene75201:CDS 50.0%
! GCAGCAGGATCAGAAGGTTT+TGG + chr1.3:74482887-74482906 MS.gene75201:CDS 50.0%
! TGGTATTGGACAGAGGCTAC+AGG + chr1.3:74482944-74482963 MS.gene75201:CDS 50.0%
! TTAGGAGCCATGGACTGAGA+CGG - chr1.3:74484228-74484247 None:intergenic 50.0%
!! ATGGTGGTTCTGGTGGTGTT+AGG + chr1.3:74482826-74482845 MS.gene75201:CDS 50.0%
!! CTGGTACTGTGAAGGCATTG+TGG - chr1.3:74484325-74484344 None:intergenic 50.0%
!! GGTAGGGGAGCACTTCTAAT+GGG - chr1.3:74484087-74484106 None:intergenic 50.0%
!! GTAGGGGAGCACTTCTAATG+GGG - chr1.3:74484086-74484105 None:intergenic 50.0%
!! GTTGAAGATGGTGGTTCTGG+TGG + chr1.3:74482819-74482838 MS.gene75201:CDS 50.0%
!! TGGTGGTTCTGGTGGTGTTA+GGG + chr1.3:74482827-74482846 MS.gene75201:CDS 50.0%
!!! GGATTTTGGGGTCTGCTAGA+AGG - chr1.3:74484021-74484040 None:intergenic 50.0%
AAAGTCAAGTGGCGGTGGCT+CGG + chr1.3:74483253-74483272 MS.gene75201:CDS 55.0%
ACAACCTGTGGCTGAGGAGT+TGG - chr1.3:74483140-74483159 None:intergenic 55.0%
ACCATCAGGAGCTTCTCCAG+TGG - chr1.3:74482649-74482668 None:intergenic 55.0%
AGACGGAGTTTGGATGTGGC+TGG - chr1.3:74482117-74482136 None:intergenic 55.0%
AGTCGTTGTTGCGGGAACGA+GGG - chr1.3:74482074-74482093 None:intergenic 55.0%
ATCGGATCATGGTGTGCCTG+TGG + chr1.3:74483100-74483119 MS.gene75201:CDS 55.0%
CAACGGAATCGGGGTAGTTG+AGG - chr1.3:74482044-74482063 None:intergenic 55.0%
CCAGGTGCAGCAACATGTAC+AGG + chr1.3:74483657-74483676 MS.gene75201:CDS 55.0%
CCTGTACATGTTGCTGCACC+TGG - chr1.3:74483660-74483679 None:intergenic 55.0%
CGACGAAACGGCACCGTTTA+TGG - chr1.3:74482529-74482548 None:intergenic 55.0%
CGATCCACATGGTAGGATCC+AGG + chr1.3:74483639-74483658 MS.gene75201:CDS 55.0%
CGCCGTAACTGCACATCAGA+CGG - chr1.3:74482134-74482153 None:intergenic 55.0%
CGTCCCATGAGTCGTTGTTG+CGG - chr1.3:74482083-74482102 None:intergenic 55.0%
CGTCTGATGTGCAGTTACGG+CGG + chr1.3:74482132-74482151 MS.gene75201:CDS 55.0%
CGTGGATAAATCCGCGAGTG+AGG - chr1.3:74482238-74482257 None:intergenic 55.0%
GAATCGGGGTAGTTGAGGTG+TGG - chr1.3:74482039-74482058 None:intergenic 55.0%
GAGGCTGTTGTTGCTGCTGA+TGG - chr1.3:74483744-74483763 None:intergenic 55.0%
GCCATGGTCTGGTACTGTGA+AGG - chr1.3:74484333-74484352 None:intergenic 55.0%
GCCGTTTCGTCGCTTAATCG+AGG + chr1.3:74482537-74482556 MS.gene75201:CDS 55.0%
GCCTTCACAGTACCAGACCA+TGG + chr1.3:74484329-74484348 MS.gene75201:CDS 55.0%
GCTGCTTACAGAGCTGCAAC+TGG + chr1.3:74484126-74484145 MS.gene75201:CDS 55.0%
GCTTACAGAGCTGCAACTGG+AGG + chr1.3:74484129-74484148 MS.gene75201:CDS 55.0%
GGAACGAGGGGAGGAATCAA+CGG - chr1.3:74482061-74482080 None:intergenic 55.0%
GGACAGAGGCTACAGGATGA+GGG + chr1.3:74482951-74482970 MS.gene75201:CDS 55.0%
GGAGTTTGGATGTGGCTGGA+GGG - chr1.3:74482113-74482132 None:intergenic 55.0%
GGATAAATCCGCGAGTGAGG+TGG - chr1.3:74482235-74482254 None:intergenic 55.0%
GGATGCTGTGCAGGAACTTC+CGG - chr1.3:74484375-74484394 None:intergenic 55.0%
GGCAGCAGAATTAGGAGCCA+TGG - chr1.3:74484238-74484257 None:intergenic 55.0%
GGGAGGAATCAACGGAATCG+GGG - chr1.3:74482053-74482072 None:intergenic 55.0%
GGGGAGGAATCAACGGAATC+GGG - chr1.3:74482054-74482073 None:intergenic 55.0%
GTCCCATGAGTCGTTGTTGC+GGG - chr1.3:74482082-74482101 None:intergenic 55.0%
GTTCCCGCAACAACGACTCA+TGG + chr1.3:74482076-74482095 MS.gene75201:CDS 55.0%
TAGTAGCAGCTGCCATGGTC+TGG - chr1.3:74484344-74484363 None:intergenic 55.0%
TCCACTGGAGAAGCTCCTGA+TGG + chr1.3:74482645-74482664 MS.gene75201:CDS 55.0%
TCGGATCATGGTGTGCCTGT+GGG + chr1.3:74483101-74483120 MS.gene75201:CDS 55.0%
TGATGGGGCTGTTGCTGTGA+TGG - chr1.3:74483907-74483926 None:intergenic 55.0%
TGCACCTGGATCCTACCATG+TGG - chr1.3:74483646-74483665 None:intergenic 55.0%
TGCGGCTGATGTTGAGGTTG+TGG - chr1.3:74483784-74483803 None:intergenic 55.0%
TGGACAGAGGCTACAGGATG+AGG + chr1.3:74482950-74482969 MS.gene75201:CDS 55.0%
TTGGATGTGGCTGGAGGGAA+AGG - chr1.3:74482108-74482127 None:intergenic 55.0%
! AGAGCTTTGTCGGTTGGACG+AGG - chr1.3:74482168-74482187 None:intergenic 55.0%
! GAGCTTTGTCGGTTGGACGA+GGG - chr1.3:74482167-74482186 None:intergenic 55.0%
! GATAACGGTGGTCCGGTTGA+CGG - chr1.3:74481997-74482016 None:intergenic 55.0%
! GGTGGGGGTTGGAGGATTTT+GGG - chr1.3:74484034-74484053 None:intergenic 55.0%
! GTAGTTGGCACTGGAGGATG+AGG - chr1.3:74482999-74483018 None:intergenic 55.0%
! GTGGGGGTTGGAGGATTTTG+GGG - chr1.3:74484033-74484052 None:intergenic 55.0%
! TGAACCAATGTGGTGGGGGT+TGG - chr1.3:74484045-74484064 None:intergenic 55.0%
! TGCTGCTTCATGCCGTCTGA+CGG - chr1.3:74484396-74484415 None:intergenic 55.0%
! TGGTGGGGGTTGGAGGATTT+TGG - chr1.3:74484035-74484054 None:intergenic 55.0%
!! ACTGAGACGGATGGTGGATC+TGG - chr1.3:74484215-74484234 None:intergenic 55.0%
!! CTGAGACGGATGGTGGATCT+GGG - chr1.3:74484214-74484233 None:intergenic 55.0%
!! GGGTAGGGGAGCACTTCTAA+TGG - chr1.3:74484088-74484107 None:intergenic 55.0%
!! TAGTTGAGGTGTGGTGGTGG+TGG - chr1.3:74482030-74482049 None:intergenic 55.0%
ACAGCAACAGCCCCATCACC+AGG + chr1.3:74483909-74483928 MS.gene75201:CDS 60.0%
ACCACCAACTCCTCAGCCAC+AGG + chr1.3:74483133-74483152 MS.gene75201:CDS 60.0%
ACCTGTGGCTGAGGAGTTGG+TGG - chr1.3:74483137-74483156 None:intergenic 60.0%
CAACCTCCAACGCCGTCAAC+CGG + chr1.3:74481982-74482001 MS.gene75201:CDS 60.0%
CCACCATCCGTCTCAGTCCA+TGG + chr1.3:74484218-74484237 MS.gene75201:CDS 60.0%
CCTGCAAGACAGCCCCAACA+AGG + chr1.3:74483943-74483962 MS.gene75201:CDS 60.0%
CCTGCACAGCATCCGTCAGA+CGG + chr1.3:74484381-74484400 MS.gene75201:CDS 60.0%
CCTTGTTGGGGCTGTCTTGC+AGG - chr1.3:74483946-74483965 None:intergenic 60.0%
CGGAGTTTGGATGTGGCTGG+AGG - chr1.3:74482114-74482133 None:intergenic 60.0%
CTGGCAGGGGCAGCAGAATT+AGG - chr1.3:74484246-74484265 None:intergenic 60.0%
GAGTCGTTGTTGCGGGAACG+AGG - chr1.3:74482075-74482094 None:intergenic 60.0%
GCAGCAGCAGCAGGATCAGA+AGG + chr1.3:74482881-74482900 MS.gene75201:CDS 60.0%
GGGTAGTTGAGGTGTGGTGG+TGG - chr1.3:74482033-74482052 None:intergenic 60.0%
GGTGGAGCCACGGAGGATAA+CGG - chr1.3:74482012-74482031 None:intergenic 60.0%
GGTTGCTGCGGCTGATGTTG+AGG - chr1.3:74483763-74483782 None:intergenic 60.0%
GTCGTTGTTGCGGGAACGAG+GGG - chr1.3:74482073-74482092 None:intergenic 60.0%
TCCAGTGCCAACTACGCTGG+CGG + chr1.3:74483004-74483023 MS.gene75201:CDS 60.0%
TCCTCCAACCCCCACCACAT+TGG + chr1.3:74484038-74484057 MS.gene75201:CDS 60.0%
TCCTCCAGTGCCAACTACGC+TGG + chr1.3:74483001-74483020 MS.gene75201:CDS 60.0%
TCGGGGTAGTTGAGGTGTGG+TGG - chr1.3:74482036-74482055 None:intergenic 60.0%
TGCTGCTGCGGCTGATGTTG+AGG - chr1.3:74483790-74483809 None:intergenic 60.0%
! ACCAATGTGGTGGGGGTTGG+AGG - chr1.3:74484042-74484061 None:intergenic 60.0%
! CACGGAGGATAACGGTGGTC+CGG - chr1.3:74482004-74482023 None:intergenic 60.0%
! CCATGGACTGAGACGGATGG+TGG - chr1.3:74484221-74484240 None:intergenic 60.0%
! GAGCCATGGACTGAGACGGA+TGG - chr1.3:74484224-74484243 None:intergenic 60.0%
! GCGGCGGTTGGTGTTCCAAT+TGG + chr1.3:74483023-74483042 MS.gene75201:CDS 60.0%
! GGTTGACGGCGTTGGAGGTT+GGG - chr1.3:74481983-74482002 None:intergenic 60.0%
! GTTGACGGCGTTGGAGGTTG+GGG - chr1.3:74481982-74482001 None:intergenic 60.0%
! GTTGGCACTGGAGGATGAGG+CGG - chr1.3:74482996-74483015 None:intergenic 60.0%
!! GAAGGCATTGTGGGCGCCAT+AGG - chr1.3:74484315-74484334 None:intergenic 60.0%
!!! CAAGGTTTTGGAGAGGCGCG+TGG - chr1.3:74482256-74482275 None:intergenic 60.0%
ACAGCAGCAGCAGCAGCAGC+AGG + chr1.3:74482872-74482891 MS.gene75201:CDS 65.0%
AGTGCCAACTACGCTGGCGG+CGG + chr1.3:74483007-74483026 MS.gene75201:CDS 65.0%
CGGACCACCGTTATCCTCCG+TGG + chr1.3:74482002-74482021 MS.gene75201:CDS 65.0%
CGGTTGGACGAGGGACGATG+TGG - chr1.3:74482158-74482177 None:intergenic 65.0%
GTTGTTGCGGGAACGAGGGG+AGG - chr1.3:74482070-74482089 None:intergenic 65.0%
TGAACGCGCCACCTCACTCG+CGG + chr1.3:74482224-74482243 MS.gene75201:CDS 65.0%
! CCGTCTGACGGATGCTGTGC+AGG - chr1.3:74484384-74484403 None:intergenic 65.0%
! CGGTTGACGGCGTTGGAGGT+TGG - chr1.3:74481984-74482003 None:intergenic 65.0%
! GCCAGCGTAGTTGGCACTGG+AGG - chr1.3:74483005-74483024 None:intergenic 65.0%
! GGAGCCACGGAGGATAACGG+TGG - chr1.3:74482009-74482028 None:intergenic 65.0%
!! GTGTGGTGGTGGTGGAGCCA+CGG - chr1.3:74482022-74482041 None:intergenic 65.0%
CCAACCGCCGCCAGCGTAGT+TGG - chr1.3:74483014-74483033 None:intergenic 70.0%
CCAACTACGCTGGCGGCGGT+TGG + chr1.3:74483011-74483030 MS.gene75201:CDS 70.0%
GCCGCCAGCGTAGTTGGCAC+TGG - chr1.3:74483008-74483027 None:intergenic 70.0%
GGTGGTCCGGTTGACGGCGT+TGG - chr1.3:74481991-74482010 None:intergenic 70.0%
! GGTCCGGTTGACGGCGTTGG+AGG - chr1.3:74481988-74482007 None:intergenic 70.0%
!! TGGTGGTGGTGGAGCCACGG+AGG - chr1.3:74482019-74482038 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 74481967 74484440 74481967 ID=MS.gene75201
chr1.3 mRNA 74481967 74484440 74481967 ID=MS.gene75201.t1;Parent=MS.gene75201
chr1.3 exon 74481967 74483303 74481967 ID=MS.gene75201.t1.exon1;Parent=MS.gene75201.t1
chr1.3 CDS 74481967 74483303 74481967 ID=cds.MS.gene75201.t1;Parent=MS.gene75201.t1
chr1.3 exon 74483531 74484440 74483531 ID=MS.gene75201.t1.exon2;Parent=MS.gene75201.t1
chr1.3 CDS 74483531 74484440 74483531 ID=cds.MS.gene75201.t1;Parent=MS.gene75201.t1
Gene Sequence

>MS.gene75201

ATGGAGGCGCAACCCCAACCTCCAACGCCGTCAACCGGACCACCGTTATCCTCCGTGGCTCCACCACCACCACACCTCAACTACCCCGATTCCGTTGATTCCTCCCCTCGTTCCCGCAACAACGACTCATGGGACGAACCTTTCCCTCCAGCCACATCCAAACTCCGTCTGATGTGCAGTTACGGCGGCCACATCGTCCCTCGTCCAACCGACAAAGCTCTCTGTTACGTCGGTGGTGACACTCGCATCGTTGTTGTTGAACGCGCCACCTCACTCGCGGATTTATCCACGCGCCTCTCCAAAACCTTGCTTAATGGAAGACCTTTCACTTTCAAGTATCAGCTTCCAAACGAAGACCTAGATTCGTTAATCTCCGTTTCAACCGATGAAGATTTAGAAAACATGATCGATGAATACGATCGAACGAATTCTACGAATTCTTCTGTGAAACCCTCGCGAATTCGTCTTTTTCTGTTTCCATCGAAACCTGAATCTGCTCAGTCAATTCCACCGCAAATTCTCGATCCTACTGTTAGATCCGGTGAATGGTTCTTTGATACCATAAACGGTGCCGTTTCGTCGCTTAATCGAGGTTTTTCTGATTCTGCTGCTTCTTCTGTGAATCATCTTTTAGGTCTTGATGATGATGTTGCTGGGAATAATCATATTGAACAAGGTTCCACTGGAGAAGCTCCTGATGGTGTTTCTCAACCTGGATCTTTTGGGAATTGTAAGAATTTGAAGCAGGATGTTCATTCTGTTCCTGATTCGCCTATGATGGAGACTTCTTCGTCCTTTGGTTCGACTTCTTCGTCTCCGTCTTTGGCGAATTTGCCTCCTATTAGGGTGCATGTTGAAGATGGTGGTTCTGGTGGTGTTAGGGTTCAACAGCAGCAACAATTGCAACAGCAGCAGCAGCAGCAGCAGGATCAGAAGGTTTTGGGGATTGATGAACAGTTTGCTCAAATGGTTGTTGGTGGTATTGGACAGAGGCTACAGGATGAGGGTTTTGCTGTCATGTCTTCACCGCCTCATCCTCCAGTGCCAACTACGCTGGCGGCGGTTGGTGTTCCAATTGGTTCTGCTGTGGTTGTTGGTGATTACCAGAATAGGGTATTCTCTGATGATGAGAGATCGGATCATGGTGTGCCTGTGGGATATAGAAAACCACCAACTCCTCAGCCACAGGTTGTTCAAGTTCAACCTCAAGCTCAAAATCAAGCTCAGGCACAATCTCAGGCACAGTCACAAGCACAGACACAGTCACAAGCTCCTCAATTTCAACAAAAGTCAAGTGGCGGTGGCTCGGATTTGCCTTCTCCTGATTCAGTTTCAAGGTTTGCTTTTACTTCTTTCCATTTACCTGTTTTTGTAATTCTTGTTTTATATTTGTGATATGGCTTATTTTTAATGTTTGTTTACATAGGATTGTTCAATTCATTAACGTGTATGTTGTTAATTGCACTGATTTGTATGCTGTTAATTGCTTTGATTATTATAAACCTAGAGTGGTGGTTTAGCAATATCTGAAATAGGCTGTTGGTGGTTGTTTTTGATCATGCAGTGATAGTAGTCTTTCAAATGCGATGTCACGTCAAAAACCTGTTGTTTATCAAGAGCAAATTCAAATTCAACCTGGAACTACAAGGGTGGATACAAAAATCAATTTGTCCGATCCACATGGTAGGATCCAGGTGCAGCAACATGTACAGGATCCTGGTTATTTGCTGCAACAGCAATTTGAACTCCAGCAGCAGCAACAACAATTTGAACTCCATCAGCAGCAACAACAGCCTCAACATCAGCCGCAGCAACCACAACCTCAACATCAGCCGCAGCAGCAACAACAGCTTCAACATCATCAGCAGCAGCAGTTTATTCATGGGGGACACTACATTCATCATAACCCTGCAATTCCTACATACTATCCTGTATATCCATCACAGCAACAGCCCCATCACCAGGTTTACTATGTACCTGCAAGACAGCCCCAACAAGGTTACAATATTTCTGTGCAGCAGGCTAATATGGGTGAATCTGCCACAACAATCCCTTCTAGCAGACCCCAAAATCCTCCAACCCCCACCACATTGGTTCAACAAAATGCAGCTTACAACCCCATTAGAAGTGCTCCCCTACCCAAAACTGAAATGACGGCTGCTGCTTACAGAGCTGCAACTGGAGGCAGTCCTCAATTTGTGCAAGTTCCTACAAGTCAGCATCAACAGCAGTATGTCACTTACTCCCAGATCCACCATCCGTCTCAGTCCATGGCTCCTAATTCTGCTGCCCCTGCCAGTTATGCTTATGAATATGCTGATCCTGCTCAAGTATACTACTCTCAGCCTATGGCGCCCACAATGCCTTCACAGTACCAGACCATGGCAGCTGCTACTATGATGCAACCGGAAGTTCCTGCACAGCATCCGTCAGACGGCATGAAGCAGCAGATAAGAACCTCACAGCCACTATAA
Protein sequence

>MS.gene75201.t1

MEAQPQPPTPSTGPPLSSVAPPPPHLNYPDSVDSSPRSRNNDSWDEPFPPATSKLRLMCSYGGHIVPRPTDKALCYVGGDTRIVVVERATSLADLSTRLSKTLLNGRPFTFKYQLPNEDLDSLISVSTDEDLENMIDEYDRTNSTNSSVKPSRIRLFLFPSKPESAQSIPPQILDPTVRSGEWFFDTINGAVSSLNRGFSDSAASSVNHLLGLDDDVAGNNHIEQGSTGEAPDGVSQPGSFGNCKNLKQDVHSVPDSPMMETSSSFGSTSSSPSLANLPPIRVHVEDGGSGGVRVQQQQQLQQQQQQQQDQKVLGIDEQFAQMVVGGIGQRLQDEGFAVMSSPPHPPVPTTLAAVGVPIGSAVVVGDYQNRVFSDDERSDHGVPVGYRKPPTPQPQVVQVQPQAQNQAQAQSQAQSQAQTQSQAPQFQQKSSGGGSDLPSPDSVSSDSSLSNAMSRQKPVVYQEQIQIQPGTTRVDTKINLSDPHGRIQVQQHVQDPGYLLQQQFELQQQQQQFELHQQQQQPQHQPQQPQPQHQPQQQQQLQHHQQQQFIHGGHYIHHNPAIPTYYPVYPSQQQPHHQVYYVPARQPQQGYNISVQQANMGESATTIPSSRPQNPPTPTTLVQQNAAYNPIRSAPLPKTEMTAAAYRAATGGSPQFVQVPTSQHQQQYVTYSQIHHPSQSMAPNSAAPASYAYEYADPAQVYYSQPMAPTMPSQYQTMAAATMMQPEVPAQHPSDGMKQQIRTSQPL