AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene75509

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene75509.t1 MTR_3g086790 98.344 302 4 1 1 301 1 302 0.0 608
MS.gene75509.t1 MTR_8g089895 59.021 327 92 11 1 301 1 311 7.91e-117 339
MS.gene75509.t1 MTR_3g080100 41.638 293 132 7 1 292 1 255 5.49e-50 166
MS.gene75509.t1 MTR_3g080100 43.478 253 106 5 40 292 1 216 1.79e-47 158
MS.gene75509.t1 MTR_5g038280 57.258 124 49 1 45 164 69 192 2.85e-39 140
MS.gene75509.t1 MTR_8g469430 57.377 122 48 1 47 168 81 198 3.84e-39 139
MS.gene75509.t1 MTR_8g468210 51.656 151 60 4 25 165 33 180 8.31e-39 138
MS.gene75509.t1 MTR_5g039000 57.500 120 48 1 46 165 64 180 3.37e-37 134
MS.gene75509.t1 MTR_4g107650 59.459 111 45 0 50 160 86 196 6.91e-37 134
MS.gene75509.t1 MTR_6g007647 62.264 106 40 0 58 163 32 137 8.01e-37 132
MS.gene75509.t1 MTR_6g007647 62.264 106 40 0 58 163 66 171 1.81e-36 132
MS.gene75509.t1 MTR_6g011610 49.635 137 61 2 26 154 36 172 1.19e-35 129
MS.gene75509.t1 MTR_6g011610 61.856 97 37 0 58 154 95 191 2.49e-35 129
MS.gene75509.t1 MTR_7g010020 59.794 97 39 0 58 154 79 175 3.80e-30 115
MS.gene75509.t1 MTR_7g103340 40.571 175 90 4 35 209 41 201 6.85e-29 110
MS.gene75509.t1 MTR_1g061660 38.372 172 88 4 58 220 58 220 3.33e-26 103
MS.gene75509.t1 MTR_8g026960 36.702 188 106 5 66 241 41 227 7.49e-26 103
MS.gene75509.t1 MTR_3g092150 50.549 91 45 0 61 151 40 130 7.31e-25 100
MS.gene75509.t1 MTR_5g019650 48.182 110 57 0 51 160 45 154 1.03e-22 94.0
MS.gene75509.t1 MTR_5g019680 57.317 82 35 0 51 132 45 126 1.07e-22 93.6
MS.gene75509.t1 MTR_4g100550 41.406 128 67 2 51 178 112 231 1.71e-18 84.0
MS.gene75509.t1 MTR_1g017090 42.500 120 62 1 59 178 130 242 1.65e-17 81.3
MS.gene75509.t1 MTR_2g061030 36.879 141 78 3 56 195 197 327 4.73e-17 80.5
MS.gene75509.t1 MTR_4g097600 41.085 129 65 3 51 178 119 237 1.07e-16 78.6
MS.gene75509.t1 MTR_5g013010 40.625 128 68 2 51 178 128 247 2.16e-16 78.2
MS.gene75509.t1 MTR_1g054285 37.063 143 81 2 42 184 137 270 3.16e-16 77.8
MS.gene75509.t1 MTR_5g014890 42.718 103 52 1 51 153 115 210 7.93e-16 76.3
MS.gene75509.t1 MTR_8g006705 41.322 121 61 3 59 178 146 257 1.76e-15 75.9
MS.gene75509.t1 MTR_4g084750 41.346 104 53 2 54 156 60 156 2.52e-15 73.6
MS.gene75509.t1 MTR_7g093430 36.478 159 80 4 32 178 121 270 9.54e-15 73.6
MS.gene75509.t1 MTR_4g126900 45.055 91 43 1 62 152 91 174 1.06e-14 72.0
MS.gene75509.t1 MTR_3g103590 50.000 72 36 0 59 130 145 216 1.34e-12 67.4
MS.gene75509.t1 MTR_2g038625 37.288 118 64 3 42 156 63 173 1.91e-11 62.8
MS.gene75509.t1 MTR_2g038580 37.288 118 64 3 42 156 63 173 1.91e-11 62.8
MS.gene75509.t1 MTR_5g013010 55.000 60 27 0 51 110 128 187 4.00e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene75509.t1 AT4G40060 47.284 313 134 15 1 301 1 294 1.39e-70 220
MS.gene75509.t1 AT2G22430 45.181 332 129 14 1 301 2 311 5.63e-63 201
MS.gene75509.t1 AT5G65310 42.296 331 141 12 1 301 1 311 5.45e-62 199
MS.gene75509.t1 AT5G65310 44.097 288 117 9 38 301 26 293 1.59e-60 194
MS.gene75509.t1 AT3G01470 63.810 105 37 1 58 161 67 171 4.35e-38 136
MS.gene75509.t1 AT1G69780 55.000 120 51 1 46 165 72 188 1.78e-36 132
MS.gene75509.t1 AT5G15150 48.428 159 78 2 42 197 95 252 6.05e-36 131
MS.gene75509.t1 AT3G01220 53.982 113 50 1 44 154 70 182 1.46e-32 122
MS.gene75509.t1 AT2G46680 40.123 162 91 2 50 205 23 184 3.53e-30 115
MS.gene75509.t1 AT1G26960 44.138 145 74 2 57 201 69 206 2.53e-29 112
MS.gene75509.t1 AT2G46680 40.000 160 92 2 50 205 23 182 3.54e-29 112
MS.gene75509.t1 AT3G61890 48.936 94 48 0 62 155 33 126 4.83e-26 103
MS.gene75509.t1 AT1G27045 49.565 115 58 0 45 159 54 168 9.48e-26 102
MS.gene75509.t1 AT1G27045 49.565 115 58 0 45 159 11 125 1.66e-25 100
MS.gene75509.t1 AT1G27045 49.565 115 58 0 45 159 11 125 1.66e-25 100
MS.gene75509.t1 AT1G27045 49.565 115 58 0 45 159 3 117 1.96e-25 100
MS.gene75509.t1 AT5G03790 43.200 125 55 3 59 180 77 188 5.76e-25 100
MS.gene75509.t1 AT1G27045 49.533 107 54 0 45 151 54 160 7.30e-24 98.2
MS.gene75509.t1 AT5G03790 50.000 90 38 1 59 148 77 159 1.03e-22 93.6
MS.gene75509.t1 AT4G36740 46.789 109 51 1 52 160 49 150 2.02e-21 90.5
MS.gene75509.t1 AT4G36740 46.789 109 51 1 52 160 48 149 2.17e-21 90.5
MS.gene75509.t1 AT2G18550 44.275 131 58 3 46 173 50 168 2.64e-21 90.5
MS.gene75509.t1 AT5G66700 60.811 74 29 0 59 132 71 144 3.37e-21 90.1
MS.gene75509.t1 AT2G36610 39.535 129 61 3 38 158 52 171 1.04e-20 87.8
MS.gene75509.t1 AT5G53980 53.521 71 33 0 59 129 11 81 4.59e-17 77.4
MS.gene75509.t1 AT2G01430 38.129 139 73 5 42 179 122 248 2.11e-16 78.2
MS.gene75509.t1 AT4G16780 39.062 128 70 2 51 178 121 240 2.88e-16 77.8
MS.gene75509.t1 AT4G37790 42.718 103 52 1 51 153 118 213 6.03e-16 76.6
MS.gene75509.t1 AT2G22800 44.660 103 50 1 51 153 105 200 1.32e-15 75.9
MS.gene75509.t1 AT5G06710 35.758 165 81 5 57 221 188 327 3.75e-15 75.1
MS.gene75509.t1 AT4G17460 43.000 100 50 1 54 153 130 222 1.78e-14 72.8
MS.gene75509.t1 AT5G47370 42.718 103 52 1 51 153 122 217 2.25e-14 72.4
MS.gene75509.t1 AT2G44910 39.167 120 65 2 59 178 163 274 9.14e-14 70.9
MS.gene75509.t1 AT3G60390 38.525 122 67 2 57 178 160 273 5.59e-13 68.6
MS.gene75509.t1 AT2G01430 45.714 70 38 0 42 111 122 191 8.70e-11 60.8

Find 60 sgRNAs with CRISPR-Local

Find 83 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCATCTTGCTCTCCTGTTT+TGG 0.182991 3.3:-72399257 None:intergenic
TCTTCACATGATAAGATTTC+TGG 0.185572 3.3:-72400266 None:intergenic
GTCATAATCCAATTGATCTT+TGG 0.265734 3.3:-72400067 None:intergenic
CCATACACATGTTTGTTCCT+TGG 0.325978 3.3:-72399021 None:intergenic
CAATTCATGGAGGAAGATTC+AGG 0.342389 3.3:-72400234 None:intergenic
GGAATTGATGTTTCTGAAGA+TGG 0.346885 3.3:-72400033 None:intergenic
AAGCAGTTGGAAAGAGATTA+TGG 0.359328 3.3:+72399285 MS.gene75509:CDS
TTCAGAATCCAAAGATCAAT+TGG 0.360161 3.3:+72400059 MS.gene75509:CDS
TAGCTGTTTGGTTCCAAAAC+AGG 0.367018 3.3:+72399244 MS.gene75509:CDS
GAGAAGCTTGCCATTGAACT+TGG 0.376848 3.3:+72399204 MS.gene75509:CDS
ATTAATGATTAACCTGTTGA+TGG 0.378350 3.3:-72398850 None:intergenic
TCCAGCGCAATTTCTTCATC+CGG 0.382294 3.3:+72400177 MS.gene75509:CDS
TGATCTTTGGATTCTGAACT+AGG 0.386464 3.3:-72400054 None:intergenic
AGTGGATCAAGTTAAGGCTT+TGG 0.405768 3.3:+72399137 MS.gene75509:CDS
AGCCTAGACAAGTAGCTGTT+TGG 0.421533 3.3:+72399232 MS.gene75509:CDS
CTGGTACTGGAAACAATTCA+TGG 0.434538 3.3:-72400247 None:intergenic
ATTAAGAGTGGATCAAGTTA+AGG 0.434553 3.3:+72399131 MS.gene75509:CDS
CCAGCGCAATTTCTTCATCC+GGG 0.438421 3.3:+72400178 MS.gene75509:CDS
GAAGGGTGTGTTGAAGAAAC+TGG 0.440606 3.3:+72399084 MS.gene75509:CDS
ATCACAATCTCTCCATCAAC+AGG 0.446409 3.3:+72398838 MS.gene75509:CDS
CATGATAAGATTTCTGGTAC+TGG 0.447688 3.3:-72400260 None:intergenic
AGACTTGAAAGACGGTTCTT+CGG 0.453631 3.3:+72400146 MS.gene75509:CDS
GAACCGTCTTTCAAGTCTAC+TGG 0.456218 3.3:-72400141 None:intergenic
TTGGATGGATTTGAAGAAGA+AGG 0.464593 3.3:+72399066 MS.gene75509:CDS
TTTCAATCAATGATGTTGGA+TGG 0.484310 3.3:+72399051 MS.gene75509:CDS
TGAAGAAGAATCTGAGGTGT+TGG 0.489416 3.3:-72398806 None:intergenic
CCAAGGAACAAACATGTGTA+TGG 0.493903 3.3:+72399021 MS.gene75509:CDS
GGTCAGGACAGTACCATTGT+AGG 0.494776 3.3:-72400356 None:intergenic
AACAACAATGATGTTGGTAT+TGG 0.500792 3.3:+72400099 MS.gene75509:CDS
GAACAAACATGTGTATGGTA+TGG 0.501372 3.3:+72399026 MS.gene75509:CDS
AGGAGTTGAAGAAGAATCTG+AGG 0.515030 3.3:-72398812 None:intergenic
ATAATCTCTTTCCAACTGCT+TGG 0.516725 3.3:-72399283 None:intergenic
GGAGTTTCAATCAATGATGT+TGG 0.518927 3.3:+72399047 MS.gene75509:CDS
GAAGAAGAATCTGAGGTGTT+GGG 0.524763 3.3:-72398805 None:intergenic
GAATTGATGTTTCTGAAGAT+GGG 0.525493 3.3:-72400032 None:intergenic
GAAATCTTATCATGTGAAGA+TGG 0.526190 3.3:+72400269 MS.gene75509:CDS
AGGCTGCAACCCAAGTTCAA+TGG 0.529892 3.3:-72399214 None:intergenic
CCCGGATGAAGAAATTGCGC+TGG 0.538230 3.3:-72400178 None:intergenic
AAGGAATTGAAATCAAAGCT+TGG 0.543819 3.3:+72399928 MS.gene75509:CDS
AAGATTCAGGAGACAACAAA+AGG 0.555354 3.3:-72400221 None:intergenic
AGAAGCTTGCCATTGAACTT+GGG 0.559661 3.3:+72399205 MS.gene75509:CDS
ATAATCAACAACAATGATGT+TGG 0.562748 3.3:+72400093 MS.gene75509:CDS
CAGCGCAATTTCTTCATCCG+GGG 0.572338 3.3:+72400179 MS.gene75509:CDS
GGACAGTACCATTGTAGGGT+TGG 0.574109 3.3:-72400351 None:intergenic
TCCAAAACAGGAGAGCAAGA+TGG 0.577020 3.3:+72399256 MS.gene75509:CDS
GTCAGGACAGTACCATTGTA+GGG 0.584883 3.3:-72400355 None:intergenic
GAAGAAACGTAGATTAAGAG+TGG 0.588824 3.3:+72399119 MS.gene75509:CDS
AACCAAACAGCTACTTGTCT+AGG 0.590010 3.3:-72399234 None:intergenic
CAATTTCTTAAGTGCCGATG+AGG 0.590118 3.3:+72400299 MS.gene75509:CDS
TGGATGGATTTGAAGAAGAA+GGG 0.596251 3.3:+72399067 MS.gene75509:CDS
AAGATGGAAGACCAAGCAGT+TGG 0.606063 3.3:+72399272 MS.gene75509:CDS
TTTCCAGTAGACTTGAAAGA+CGG 0.606889 3.3:+72400138 MS.gene75509:CDS
ATTTAGAGGAACATAGTCCA+AGG 0.623460 3.3:+72399004 MS.gene75509:intron
TTCATCACAAGATTCAAGCA+TGG 0.624852 3.3:-72399998 None:intergenic
AATGGTACTGTCCTGACCAG+TGG 0.629087 3.3:+72400361 MS.gene75509:CDS
CTGCTGACTCTGAAGAACCC+CGG 0.637223 3.3:-72400196 None:intergenic
AGCAAGCACCAACCCTACAA+TGG 0.659727 3.3:+72400343 MS.gene75509:CDS
ATCTTATCATGTGAAGATGG+AGG 0.661383 3.3:+72400272 MS.gene75509:CDS
GATGGAGAGATTGTGATGAG+AGG 0.700166 3.3:-72398832 None:intergenic
GTACTGGAAACAATTCATGG+AGG 0.765506 3.3:-72400244 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTCTTTCTATTTT+TGG + chr3.3:72398902-72398921 MS.gene75509:intron 10.0%
!! AACGTAAAAGTAAAAAAACA+TGG - chr3.3:72398934-72398953 None:intergenic 20.0%
!!! ATGTTTTTTTACTTTTACGT+TGG + chr3.3:72398933-72398952 MS.gene75509:intron 20.0%
!!! TTTGTTGTATTTACAGATTA+AGG + chr3.3:72399909-72399928 MS.gene75509:intron 20.0%
!!! TTTTTCTTTCTATTTTTGGA+GGG + chr3.3:72398906-72398925 MS.gene75509:intron 20.0%
!!! TTTTTTCTTTCTATTTTTGG+AGG + chr3.3:72398905-72398924 MS.gene75509:intron 20.0%
! ATAATCAACAACAATGATGT+TGG + chr3.3:72400093-72400112 MS.gene75509:CDS 25.0%
! ATTAATGATTAACCTGTTGA+TGG - chr3.3:72398853-72398872 None:intergenic 25.0%
! GATCTTAGTTATGAAATTGT+AGG + chr3.3:72399788-72399807 MS.gene75509:intron 25.0%
! TATTTAGTGTATGTTTGGAT+TGG + chr3.3:72399698-72399717 MS.gene75509:intron 25.0%
! TGAATTTAGCAAAATCACTT+TGG + chr3.3:72399724-72399743 MS.gene75509:intron 25.0%
! TTATAGTTAAGTTACTACTG+TGG - chr3.3:72399407-72399426 None:intergenic 25.0%
!!! AAAAAGCACAATCAATGTTT+TGG + chr3.3:72399960-72399979 MS.gene75509:CDS 25.0%
!!! CTTTTTTTGCATTGATTTAG+AGG + chr3.3:72398990-72399009 MS.gene75509:intron 25.0%
!!! TGTGTTATTTAGTGTATGTT+TGG + chr3.3:72399693-72399712 MS.gene75509:intron 25.0%
AACAACAATGATGTTGGTAT+TGG + chr3.3:72400099-72400118 MS.gene75509:CDS 30.0%
AAGGAATTGAAATCAAAGCT+TGG + chr3.3:72399928-72399947 MS.gene75509:CDS 30.0%
ATTAAGAGTGGATCAAGTTA+AGG + chr3.3:72399131-72399150 MS.gene75509:CDS 30.0%
GAAATCTTATCATGTGAAGA+TGG + chr3.3:72400269-72400288 MS.gene75509:CDS 30.0%
GTCATAATCCAATTGATCTT+TGG - chr3.3:72400070-72400089 None:intergenic 30.0%
TCTTCACATGATAAGATTTC+TGG - chr3.3:72400269-72400288 None:intergenic 30.0%
TTCAGAATCCAAAGATCAAT+TGG + chr3.3:72400059-72400078 MS.gene75509:CDS 30.0%
TTTCAATCAATGATGTTGGA+TGG + chr3.3:72399051-72399070 MS.gene75509:CDS 30.0%
! GAATTGATGTTTCTGAAGAT+GGG - chr3.3:72400035-72400054 None:intergenic 30.0%
!! GGCAAGTATTTAACTTTTCT+AGG + chr3.3:72399809-72399828 MS.gene75509:intron 30.0%
AAGATTCAGGAGACAACAAA+AGG - chr3.3:72400224-72400243 None:intergenic 35.0%
AAGCAGTTGGAAAGAGATTA+TGG + chr3.3:72399285-72399304 MS.gene75509:CDS 35.0%
AGATCAAGTACTTTCACAAG+AGG - chr3.3:72399773-72399792 None:intergenic 35.0%
ATAATCTCTTTCCAACTGCT+TGG - chr3.3:72399286-72399305 None:intergenic 35.0%
ATCTTATCATGTGAAGATGG+AGG + chr3.3:72400272-72400291 MS.gene75509:CDS 35.0%
ATTTAGAGGAACATAGTCCA+AGG + chr3.3:72399004-72399023 MS.gene75509:intron 35.0%
GAACAAACATGTGTATGGTA+TGG + chr3.3:72399026-72399045 MS.gene75509:CDS 35.0%
GAAGAAACGTAGATTAAGAG+TGG + chr3.3:72399119-72399138 MS.gene75509:CDS 35.0%
GGAGTTTCAATCAATGATGT+TGG + chr3.3:72399047-72399066 MS.gene75509:CDS 35.0%
TGATCTTTGGATTCTGAACT+AGG - chr3.3:72400057-72400076 None:intergenic 35.0%
TTCATCACAAGATTCAAGCA+TGG - chr3.3:72400001-72400020 None:intergenic 35.0%
TTTCCAGTAGACTTGAAAGA+CGG + chr3.3:72400138-72400157 MS.gene75509:CDS 35.0%
! AGACAACAAAGCTTTTCACA+AGG + chr3.3:72399362-72399381 MS.gene75509:CDS 35.0%
! GGAATTGATGTTTCTGAAGA+TGG - chr3.3:72400036-72400055 None:intergenic 35.0%
! TGGATGGATTTGAAGAAGAA+GGG + chr3.3:72399067-72399086 MS.gene75509:CDS 35.0%
! TTGGATGGATTTGAAGAAGA+AGG + chr3.3:72399066-72399085 MS.gene75509:CDS 35.0%
!! CATGATAAGATTTCTGGTAC+TGG - chr3.3:72400263-72400282 None:intergenic 35.0%
!!! AATCAATGTTTTGGTGAAGG+AGG + chr3.3:72399969-72399988 MS.gene75509:CDS 35.0%
!!! CACAATCAATGTTTTGGTGA+AGG + chr3.3:72399966-72399985 MS.gene75509:CDS 35.0%
AACCAAACAGCTACTTGTCT+AGG - chr3.3:72399237-72399256 None:intergenic 40.0%
AGAAGCTTGCCATTGAACTT+GGG + chr3.3:72399205-72399224 MS.gene75509:CDS 40.0%
AGACTTGAAAGACGGTTCTT+CGG + chr3.3:72400146-72400165 MS.gene75509:CDS 40.0%
AGGAGTTGAAGAAGAATCTG+AGG - chr3.3:72398815-72398834 None:intergenic 40.0%
AGTGGATCAAGTTAAGGCTT+TGG + chr3.3:72399137-72399156 MS.gene75509:CDS 40.0%
ATCACAATCTCTCCATCAAC+AGG + chr3.3:72398838-72398857 MS.gene75509:CDS 40.0%
CAATTCATGGAGGAAGATTC+AGG - chr3.3:72400237-72400256 None:intergenic 40.0%
CCAAGGAACAAACATGTGTA+TGG + chr3.3:72399021-72399040 MS.gene75509:CDS 40.0%
CCATACACATGTTTGTTCCT+TGG - chr3.3:72399024-72399043 None:intergenic 40.0%
GTACTGGAAACAATTCATGG+AGG - chr3.3:72400247-72400266 None:intergenic 40.0%
! CAACAAAGCTTTTCACAAGG+AGG + chr3.3:72399365-72399384 MS.gene75509:CDS 40.0%
! CTGGTACTGGAAACAATTCA+TGG - chr3.3:72400250-72400269 None:intergenic 40.0%
! GAAGAAGAATCTGAGGTGTT+GGG - chr3.3:72398808-72398827 None:intergenic 40.0%
! GCAAGCTTCTCTTTTCTTTC+AGG - chr3.3:72399195-72399214 None:intergenic 40.0%
! TAGCTGTTTGGTTCCAAAAC+AGG + chr3.3:72399244-72399263 MS.gene75509:CDS 40.0%
! TGAAGAAGAATCTGAGGTGT+TGG - chr3.3:72398809-72398828 None:intergenic 40.0%
!! CAATTTCTTAAGTGCCGATG+AGG + chr3.3:72400299-72400318 MS.gene75509:CDS 40.0%
!! GGCTTTGGAGAAAAACTTTG+AGG + chr3.3:72399152-72399171 MS.gene75509:CDS 40.0%
AAGATGGAAGACCAAGCAGT+TGG + chr3.3:72399272-72399291 MS.gene75509:CDS 45.0%
AGCCTAGACAAGTAGCTGTT+TGG + chr3.3:72399232-72399251 MS.gene75509:CDS 45.0%
GAAAAAGTTGCACGCCTCAT+CGG - chr3.3:72400316-72400335 None:intergenic 45.0%
GAGAAGCTTGCCATTGAACT+TGG + chr3.3:72399204-72399223 MS.gene75509:CDS 45.0%
GATGGAGAGATTGTGATGAG+AGG - chr3.3:72398835-72398854 None:intergenic 45.0%
GTCAGGACAGTACCATTGTA+GGG - chr3.3:72400358-72400377 None:intergenic 45.0%
TCCAAAACAGGAGAGCAAGA+TGG + chr3.3:72399256-72399275 MS.gene75509:CDS 45.0%
TCCAGCGCAATTTCTTCATC+CGG + chr3.3:72400177-72400196 MS.gene75509:CDS 45.0%
! GAACCGTCTTTCAAGTCTAC+TGG - chr3.3:72400144-72400163 None:intergenic 45.0%
! GAAGGGTGTGTTGAAGAAAC+TGG + chr3.3:72399084-72399103 MS.gene75509:CDS 45.0%
! TCCATCTTGCTCTCCTGTTT+TGG - chr3.3:72399260-72399279 None:intergenic 45.0%
!! TGAGGCGTGCAACTTTTTCT+CGG + chr3.3:72400317-72400336 MS.gene75509:CDS 45.0%
AATGGTACTGTCCTGACCAG+TGG + chr3.3:72400361-72400380 MS.gene75509:CDS 50.0%
AGCAAGCACCAACCCTACAA+TGG + chr3.3:72400343-72400362 MS.gene75509:CDS 50.0%
AGGCTGCAACCCAAGTTCAA+TGG - chr3.3:72399217-72399236 None:intergenic 50.0%
CAGCGCAATTTCTTCATCCG+GGG + chr3.3:72400179-72400198 MS.gene75509:CDS 50.0%
CCAGCGCAATTTCTTCATCC+GGG + chr3.3:72400178-72400197 MS.gene75509:CDS 50.0%
GGACAGTACCATTGTAGGGT+TGG - chr3.3:72400354-72400373 None:intergenic 50.0%
GGTCAGGACAGTACCATTGT+AGG - chr3.3:72400359-72400378 None:intergenic 50.0%
CCCGGATGAAGAAATTGCGC+TGG - chr3.3:72400181-72400200 None:intergenic 55.0%
!! CTGCTGACTCTGAAGAACCC+CGG - chr3.3:72400199-72400218 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr3.3 gene 72398796 72400389 72398796 ID=MS.gene75509
chr3.3 mRNA 72398796 72400389 72398796 ID=MS.gene75509.t1;Parent=MS.gene75509
chr3.3 exon 72398796 72398859 72398796 ID=MS.gene75509.t1.exon1;Parent=MS.gene75509.t1
chr3.3 CDS 72398796 72398859 72398796 ID=cds.MS.gene75509.t1;Parent=MS.gene75509.t1
chr3.3 exon 72399010 72399386 72399010 ID=MS.gene75509.t1.exon2;Parent=MS.gene75509.t1
chr3.3 CDS 72399010 72399386 72399010 ID=cds.MS.gene75509.t1;Parent=MS.gene75509.t1
chr3.3 exon 72399925 72400389 72399925 ID=MS.gene75509.t1.exon3;Parent=MS.gene75509.t1
chr3.3 CDS 72399925 72400389 72399925 ID=cds.MS.gene75509.t1;Parent=MS.gene75509.t1
Gene Sequence

>MS.gene75509

ATGAAGAGACCCAACACCTCAGATTCTTCTTCAACTCCTCTCATCACAATCTCTCCATCAACAGGTTAATCATTAATTTCAGACATAGATCTATGTTTGTGTTTTTTTTTTTTTTCTTTCTATTTTTGGAGGGTACCATGTTTTTTTACTTTTACGTTGGTTATAGTAATTATGTTACTATTACTTATAGTTTTCTTTTTTTGCATTGATTTAGAGGAACATAGTCCAAGGAACAAACATGTGTATGGTATGGAGTTTCAATCAATGATGTTGGATGGATTTGAAGAAGAAGGGTGTGTTGAAGAAACTGGTCATCATTCTGAGAAGAAACGTAGATTAAGAGTGGATCAAGTTAAGGCTTTGGAGAAAAACTTTGAGGTAGAAAACAAGCTTGAACCTGAAAGAAAAGAGAAGCTTGCCATTGAACTTGGGTTGCAGCCTAGACAAGTAGCTGTTTGGTTCCAAAACAGGAGAGCAAGATGGAAGACCAAGCAGTTGGAAAGAGATTATGGTGTTCTTAAAGCTAATTATGATGCTCTTAAGCTCAAGTTTGATGCAATTGCTCAAGACAACAAAGCTTTTCACAAGGAGGTATAAACATCTATAATCCACAGTAGTAACTTAACTATAATTTAGTTTCTGAAGTTATAAGTGCAATAACAACTTAATTAAGTGTTTATAGCATAATCACTTATCATTTAAGTACTTTCGAATAAGCTACTTCATAATATAAGATAGAATAAAGTCACTAGTCAAACTATTTTCATGTAAGTTATTAGTTGTTTTCATAAATTATTCTAAAGCGCTTGTGAAAATAAGCTAAAAACAACTTATTTATAAGTTGTTTCTATAAAAAACAACTTATTTGATATATCAATTCACAGATTTTTAAGCTGTTGTGTTATTTAGTGTATGTTTGGATTGGCAGTGAATTTAGCAAAATCACTTTGGCACTTGAATTTGTAAAGCTATGTCCTCTTGTGAAAGTACTTGATCTTAGTTATGAAATTGTAGGCAAGTATTTAACTTTTCTAGGAACAAATGTATCATAAATTTGAAGTTATTATTGAAAGTGTGTGATTAATTTTCTCTCAAAAACAGAAAGTTGATTGATTTGTTGTATTTACAGATTAAGGAATTGAAATCAAAGCTTGGAGAAGAAGAAAAAAGCACAATCAATGTTTTGGTGAAGGAGGAGTTAACCATGCTTGAATCTTGTGATGAAGACAAGCATAACCCATCTTCAGAAACATCAATTCCTAGTTCAGAATCCAAAGATCAATTGGATTATGACTGCATAATCAACAACAATGATGTTGGTATTGGTGAAACTTCTTCACTCTTTCCAGTAGACTTGAAAGACGGTTCTTCGGACAGCGACTCCAGCGCAATTTCTTCATCCGGGGTTCTTCAGAGTCAGCAGCACCTTTTGTTGTCTCCTGAATCTTCCTCCATGAATTGTTTCCAGTACCAGAAATCTTATCATGTGAAGATGGAGGAGCACAATTTCTTAAGTGCCGATGAGGCGTGCAACTTTTTCTCGGACGAGCAAGCACCAACCCTACAATGGTACTGTCCTGACCAGTGGAGTTAA
Protein sequence

>MS.gene75509.t1

MKRPNTSDSSSTPLITISPSTEEHSPRNKHVYGMEFQSMMLDGFEEEGCVEETGHHSEKKRRLRVDQVKALEKNFEVENKLEPERKEKLAIELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKANYDALKLKFDAIAQDNKAFHKEIKELKSKLGEEEKSTINVLVKEELTMLESCDEDKHNPSSETSIPSSESKDQLDYDCIINNNDVGIGETSSLFPVDLKDGSSDSDSSAISSSGVLQSQQHLLLSPESSSMNCFQYQKSYHVKMEEHNFLSADEACNFFSDEQAPTLQWYCPDQWS