Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77616.t1 | XP_003596089.2 | 98 | 392 | 8 | 0 | 1 | 392 | 1 | 392 | 4.80E-220 | 773.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77616.t1 | G7IQY1 | 98.0 | 392 | 8 | 0 | 1 | 392 | 1 | 392 | 3.4e-220 | 773.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050593 | MS.gene77616 | 0.809667 | 1.69E-50 | -1.69E-46 |
| MS.gene050670 | MS.gene77616 | 0.837189 | 6.02E-57 | -1.69E-46 |
| MS.gene051387 | MS.gene77616 | 0.86749 | 1.32E-65 | -1.69E-46 |
| MS.gene051525 | MS.gene77616 | 0.827049 | 1.94E-54 | -1.69E-46 |
| MS.gene051582 | MS.gene77616 | 0.820823 | 5.60E-53 | -1.69E-46 |
| MS.gene052414 | MS.gene77616 | 0.800016 | 1.76E-48 | -1.69E-46 |
| MS.gene052485 | MS.gene77616 | 0.810015 | 1.42E-50 | -1.69E-46 |
| MS.gene052982 | MS.gene77616 | 0.806045 | 9.95E-50 | -1.69E-46 |
| MS.gene053169 | MS.gene77616 | 0.831881 | 1.30E-55 | -1.69E-46 |
| MS.gene054556 | MS.gene77616 | 0.825497 | 4.54E-54 | -1.69E-46 |
| MS.gene055369 | MS.gene77616 | 0.856792 | 2.53E-62 | -1.69E-46 |
| MS.gene05553 | MS.gene77616 | 0.818817 | 1.61E-52 | -1.69E-46 |
| MS.gene055911 | MS.gene77616 | 0.804696 | 1.91E-49 | -1.69E-46 |
| MS.gene05594 | MS.gene77616 | 0.809444 | 1.89E-50 | -1.69E-46 |
| MS.gene056407 | MS.gene77616 | 0.854403 | 1.26E-61 | -1.69E-46 |
| MS.gene056514 | MS.gene77616 | 0.829154 | 6.03E-55 | -1.69E-46 |
| MS.gene057124 | MS.gene77616 | 0.823267 | 1.52E-53 | -1.69E-46 |
| MS.gene057823 | MS.gene77616 | 0.809549 | 1.79E-50 | -1.69E-46 |
| MS.gene058700 | MS.gene77616 | 0.843627 | 1.25E-58 | -1.69E-46 |
| MS.gene058948 | MS.gene77616 | 0.800187 | 1.62E-48 | -1.69E-46 |
| MS.gene05907 | MS.gene77616 | 0.800687 | 1.28E-48 | -1.69E-46 |
| MS.gene059420 | MS.gene77616 | 0.826613 | 2.46E-54 | -1.69E-46 |
| MS.gene060403 | MS.gene77616 | 0.828717 | 7.70E-55 | -1.69E-46 |
| MS.gene060837 | MS.gene77616 | 0.803781 | 2.96E-49 | -1.69E-46 |
| MS.gene061154 | MS.gene77616 | 0.830337 | 3.11E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77616.t1 | MTR_2g066060 | 97.959 | 392 | 8 | 0 | 1 | 392 | 1 | 392 | 0.0 | 792 |
| MS.gene77616.t1 | MTR_2g066060 | 97.426 | 272 | 7 | 0 | 1 | 272 | 1 | 272 | 0.0 | 548 |
| MS.gene77616.t1 | MTR_7g114070 | 32.927 | 164 | 106 | 2 | 227 | 388 | 174 | 335 | 1.50e-20 | 92.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77616.t1 | AT1G56180 | 68.217 | 387 | 98 | 5 | 19 | 392 | 15 | 389 | 0.0 | 533 |
| MS.gene77616.t1 | AT1G56180 | 62.799 | 293 | 84 | 5 | 19 | 298 | 15 | 295 | 6.28e-128 | 370 |
| MS.gene77616.t1 | AT5G27290 | 31.953 | 169 | 103 | 3 | 226 | 388 | 174 | 336 | 9.41e-22 | 95.5 |
| MS.gene77616.t1 | AT2G21960 | 34.337 | 166 | 100 | 1 | 220 | 385 | 173 | 329 | 1.64e-18 | 86.3 |
Find 123 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCAGCTGAGGCTCTTATTTA+TGG | 0.164924 | 2.3:-30161718 | MS.gene77616:CDS |
| CCCATTTGCATTGCAACTAT+TGG | 0.199577 | 2.3:+30163736 | None:intergenic |
| TTTAGGCAGGGACTCAGTTT+TGG | 0.224980 | 2.3:-30163259 | MS.gene77616:intron |
| TTTGGTAAATGCAGAAATAT+TGG | 0.236327 | 2.3:-30167980 | MS.gene77616:intron |
| TGAGAAAATGAGGGAAAATT+TGG | 0.256595 | 2.3:+30168356 | None:intergenic |
| TCCGAGAGACCCCACTTCTT+TGG | 0.282916 | 2.3:+30164116 | None:intergenic |
| TAAAATTTCAGCTTACCTAA+TGG | 0.314470 | 2.3:-30163788 | MS.gene77616:intron |
| GCAGTCTGAGTGCGGTAATT+AGG | 0.319305 | 2.3:-30161412 | MS.gene77616:CDS |
| AAAATTTCAGCTTACCTAAT+GGG | 0.320619 | 2.3:-30163787 | MS.gene77616:intron |
| TTTCTGCATTTACCAAAATT+AGG | 0.324903 | 2.3:+30167986 | None:intergenic |
| CTTTGCAGATTCTATATTCC+TGG | 0.328033 | 2.3:-30163991 | MS.gene77616:CDS |
| GAAGCAGGACATCTCTTAAT+AGG | 0.332947 | 2.3:-30163903 | MS.gene77616:intron |
| CTTGAGCTCCGCAACTGGTT+TGG | 0.348418 | 2.3:-30164316 | MS.gene77616:CDS |
| TAGCTCAAATATCAAGTTAC+TGG | 0.359297 | 2.3:-30163956 | MS.gene77616:CDS |
| TCTAGAATCACCCCTCGAAT+TGG | 0.364635 | 2.3:+30163760 | None:intergenic |
| CCCAACCTTGCAGTGATATT+AGG | 0.375300 | 2.3:-30164020 | MS.gene77616:CDS |
| TCCAATAGTTGCAATGCAAA+TGG | 0.383334 | 2.3:-30163737 | MS.gene77616:CDS |
| AATTTGGAGGTGAGAGGGAG+AGG | 0.391572 | 2.3:+30168372 | None:intergenic |
| TGTTCGGTCCGCAGAGGGAT+TGG | 0.409605 | 2.3:-30168093 | MS.gene77616:CDS |
| GAATGCTTATAAGTTTCTTA+AGG | 0.416498 | 2.3:-30168023 | MS.gene77616:CDS |
| CTCGAATTGGGCATCCCATT+AGG | 0.420824 | 2.3:+30163773 | None:intergenic |
| TTCTGCAGTTACACGTTGTT+CGG | 0.423987 | 2.3:+30168180 | None:intergenic |
| CAAGTTACTGGCCACCATAT+AGG | 0.432077 | 2.3:-30163944 | MS.gene77616:CDS |
| CTTGCTGAAGGCCGACTAGA+TGG | 0.432462 | 2.3:-30163215 | MS.gene77616:CDS |
| ATGAGGATTCGACGCCTATA+TGG | 0.434298 | 2.3:+30163930 | None:intergenic |
| GTAGTCGCGCCATTCTTTGA+AGG | 0.435589 | 2.3:+30168264 | None:intergenic |
| GTTCGGTCCGCAGAGGGATT+GGG | 0.438088 | 2.3:-30168092 | MS.gene77616:CDS |
| CCTAATATCACTGCAAGGTT+GGG | 0.439815 | 2.3:+30164020 | None:intergenic |
| CTAGAATCACCCCTCGAATT+GGG | 0.443121 | 2.3:+30163761 | None:intergenic |
| TTACACGTTGTTCGGTTTCG+AGG | 0.444604 | 2.3:+30168188 | None:intergenic |
| TTATAAGTTTCTTAAGGATA+GGG | 0.447210 | 2.3:-30168017 | MS.gene77616:CDS |
| CTCCGGTGACCGAGTTGACT+CGG | 0.451508 | 2.3:-30168138 | MS.gene77616:CDS |
| GATGTCTTGAGCTCCGCAAC+TGG | 0.452532 | 2.3:-30164321 | MS.gene77616:CDS |
| CTTATAAGTTTCTTAAGGAT+AGG | 0.452608 | 2.3:-30168018 | MS.gene77616:CDS |
| GTTGCGGAGCTCAAGACATC+TGG | 0.464021 | 2.3:+30164324 | None:intergenic |
| TGAGGGGAGGTGAGAAAATG+AGG | 0.469297 | 2.3:+30168346 | None:intergenic |
| GGGAAAATTTGGAGGTGAGA+GGG | 0.472258 | 2.3:+30168367 | None:intergenic |
| CACTCACCGCCTTCAAAGAA+TGG | 0.473473 | 2.3:-30168273 | MS.gene77616:CDS |
| AATCTTATAATTTGCTCAAG+TGG | 0.477761 | 2.3:-30161481 | MS.gene77616:CDS |
| GGAAAGTGCGGGAAAATTGA+GGG | 0.478116 | 2.3:+30168329 | None:intergenic |
| GGAGAACCTCCGTCGGTAAA+CGG | 0.478228 | 2.3:+30168157 | None:intergenic |
| ACTTGATATTTGAGCTAGAC+AGG | 0.483314 | 2.3:+30163962 | None:intergenic |
| TGACCGAGTTGACTCGGTCT+CGG | 0.484116 | 2.3:-30168132 | MS.gene77616:CDS |
| TCCAAAGAAGTGGGGTCTCT+CGG | 0.487788 | 2.3:-30164117 | MS.gene77616:CDS |
| CCAATAGTTGCAATGCAAAT+GGG | 0.492043 | 2.3:-30163736 | MS.gene77616:CDS |
| ACCTAATATCACTGCAAGGT+TGG | 0.492993 | 2.3:+30164019 | None:intergenic |
| TCGGTCTCGGTTCCGCGAGT+TGG | 0.498199 | 2.3:-30168119 | MS.gene77616:CDS |
| CTAAACTTGCTCCAAAGAAG+TGG | 0.499524 | 2.3:-30164127 | MS.gene77616:CDS |
| GGGAAAGTGCGGGAAAATTG+AGG | 0.503706 | 2.3:+30168328 | None:intergenic |
| CGAATCCTCATTCATGAAGC+AGG | 0.506827 | 2.3:-30163918 | MS.gene77616:CDS |
| CTTATTTATGGTGAGGCAGA+GGG | 0.507075 | 2.3:-30161706 | MS.gene77616:CDS |
| AGCTCCGCAACTGGTTTGGA+AGG | 0.510365 | 2.3:-30164312 | MS.gene77616:intron |
| TACACGTTGTTCGGTTTCGA+GGG | 0.510602 | 2.3:+30168189 | None:intergenic |
| ACATCTGGTGTTACATTCCT+CGG | 0.513237 | 2.3:+30164339 | None:intergenic |
| AGGGAAAATTTGGAGGTGAG+AGG | 0.521085 | 2.3:+30168366 | None:intergenic |
| TAATGGGATGCCCAATTCGA+GGG | 0.521844 | 2.3:-30163771 | MS.gene77616:CDS |
| TTTGCAGATTCTATATTCCT+GGG | 0.522149 | 2.3:-30163990 | MS.gene77616:CDS |
| GACCGAGTCAACTCGGTCAC+CGG | 0.524589 | 2.3:+30168136 | None:intergenic |
| TTTCACAAGGAATAGACCTC+AGG | 0.525323 | 2.3:-30164043 | MS.gene77616:CDS |
| GCCTCCATTGTCTGTAGCAG+AGG | 0.526930 | 2.3:-30161635 | MS.gene77616:intron |
| CGGAGAGGTTTGCGTGTCAC+CGG | 0.526945 | 2.3:+30168304 | None:intergenic |
| GTTTACCGACGGAGGTTCTC+CGG | 0.527296 | 2.3:-30168155 | MS.gene77616:CDS |
| TCGGCCTTCAGCAAGGTCGC+TGG | 0.528447 | 2.3:+30163223 | None:intergenic |
| CCGAGCTGCTGTTAAAGCAT+TGG | 0.528568 | 2.3:-30161444 | MS.gene77616:CDS |
| TTCCGCGAGTTGGAGATGTT+CGG | 0.537060 | 2.3:-30168109 | MS.gene77616:CDS |
| TCTTATTTATGGTGAGGCAG+AGG | 0.537919 | 2.3:-30161707 | MS.gene77616:CDS |
| TCAATGGTTTAGGTACTGTA+TGG | 0.538238 | 2.3:-30161758 | MS.gene77616:intron |
| TATAAGTTTCTTAAGGATAG+GGG | 0.539138 | 2.3:-30168016 | MS.gene77616:CDS |
| TATTCCTTGTGAAATAAGAA+AGG | 0.544423 | 2.3:+30164052 | None:intergenic |
| CTTTGAAGGCGGTGAGTGGT+CGG | 0.546232 | 2.3:+30168278 | None:intergenic |
| GATGTCCTGCTTCATGAATG+AGG | 0.549091 | 2.3:+30163913 | None:intergenic |
| GAAAATGAGGGAAAATTTGG+AGG | 0.560611 | 2.3:+30168359 | None:intergenic |
| TGCACCTTCCAAACCAGTTG+CGG | 0.562851 | 2.3:+30164308 | None:intergenic |
| CTAATGGGATGCCCAATTCG+AGG | 0.563298 | 2.3:-30163772 | MS.gene77616:CDS |
| GGAGATGTTCGGTCCGCAGA+GGG | 0.565156 | 2.3:-30168098 | MS.gene77616:CDS |
| GCAAATGGGTATCCAAGGAC+AGG | 0.566483 | 2.3:-30163722 | MS.gene77616:intron |
| GTGTCCTTTCTTATTTCACA+AGG | 0.567590 | 2.3:-30164056 | MS.gene77616:CDS |
| TAAACTTGCTCCAAAGAAGT+GGG | 0.569605 | 2.3:-30164126 | MS.gene77616:CDS |
| AGGCGGTGAGTGGTCGGAGA+CGG | 0.571801 | 2.3:+30168284 | None:intergenic |
| GTGAGAGGGAGAGGAAGACA+TGG | 0.573325 | 2.3:+30168381 | None:intergenic |
| AAGACCTCTGCTACAGACAA+TGG | 0.575943 | 2.3:+30161631 | None:intergenic |
| AAGAAGTGGGGTCTCTCGGA+TGG | 0.580486 | 2.3:-30164113 | MS.gene77616:CDS |
| CCAATGCTTTAACAGCAGCT+CGG | 0.580868 | 2.3:+30161444 | None:intergenic |
| CATTCTTTGAAGGCGGTGAG+TGG | 0.582217 | 2.3:+30168274 | None:intergenic |
| GTCTGAGTGCGGTAATTAGG+AGG | 0.584201 | 2.3:-30161409 | MS.gene77616:CDS |
| GCAATGCAAATGGGTATCCA+AGG | 0.590300 | 2.3:-30163727 | MS.gene77616:CDS |
| TCACTGCAAGGTTGGGCCTG+AGG | 0.590759 | 2.3:+30164027 | None:intergenic |
| GAGCTAGACAGGTACCTCCC+AGG | 0.591504 | 2.3:+30163973 | None:intergenic |
| AGAGGTTTGCGTGTCACCGG+AGG | 0.596089 | 2.3:+30168307 | None:intergenic |
| TGAGGCTCTTATTTATGGTG+AGG | 0.600518 | 2.3:-30161713 | MS.gene77616:CDS |
| GAGGGGAGGTGAGAAAATGA+GGG | 0.601856 | 2.3:+30168347 | None:intergenic |
| GTGTCACCGGAGGGAAAGTG+CGG | 0.603430 | 2.3:+30168317 | None:intergenic |
| AGATGTCTAATCAAGCAAGA+TGG | 0.603923 | 2.3:-30161514 | MS.gene77616:CDS |
| TGTCACCGGAGGGAAAGTGC+GGG | 0.614609 | 2.3:+30168318 | None:intergenic |
| GAGGTTTGCGTGTCACCGGA+GGG | 0.619866 | 2.3:+30168308 | None:intergenic |
| GTCGCGCCATTCTTTGAAGG+CGG | 0.621068 | 2.3:+30168267 | None:intergenic |
| GAACCGAGACCGAGTCAACT+CGG | 0.622067 | 2.3:+30168129 | None:intergenic |
| GTTGCCAGCGACCTTGCTGA+AGG | 0.623473 | 2.3:-30163227 | MS.gene77616:CDS |
| ATTTATGGTGAGGCAGAGGG+TGG | 0.624370 | 2.3:-30161703 | MS.gene77616:CDS |
| CATCTAGTCGGCCTTCAGCA+AGG | 0.633811 | 2.3:+30163216 | None:intergenic |
| CAGGAATATAGAATCTGCAA+AGG | 0.635173 | 2.3:+30163992 | None:intergenic |
| AGGATTCGACGCCTATATGG+TGG | 0.636942 | 2.3:+30163933 | None:intergenic |
| GTAAAACGCAAAGACCTCGC+AGG | 0.637045 | 2.3:-30168232 | MS.gene77616:CDS |
| GCTGTTAAAGCATTGGAAAG+TGG | 0.642904 | 2.3:-30161437 | MS.gene77616:CDS |
| GCAGAACCGTTTACCGACGG+AGG | 0.650776 | 2.3:-30168163 | MS.gene77616:CDS |
| CAAAAGCTGAACCATCTAGT+CGG | 0.651547 | 2.3:+30163204 | None:intergenic |
| GACCGAACATCTCCAACTCG+CGG | 0.656076 | 2.3:+30168107 | None:intergenic |
| GTGAGTGGTCGGAGACGGAG+AGG | 0.659853 | 2.3:+30168289 | None:intergenic |
| CTAGACCTAATATCACTGCA+AGG | 0.666706 | 2.3:+30164015 | None:intergenic |
| TGGAGATGTTCGGTCCGCAG+AGG | 0.666720 | 2.3:-30168099 | MS.gene77616:CDS |
| TGCGGTAATTAGGAGGATCG+AGG | 0.668565 | 2.3:-30161402 | MS.gene77616:CDS |
| ACCTCTGCTACAGACAATGG+AGG | 0.669231 | 2.3:+30161634 | None:intergenic |
| AATGGGATGCCCAATTCGAG+GGG | 0.670159 | 2.3:-30163770 | MS.gene77616:CDS |
| GCAGATTCTATATTCCTGGG+AGG | 0.678010 | 2.3:-30163987 | MS.gene77616:CDS |
| AGTGCGGGAAAATTGAGGGG+AGG | 0.682404 | 2.3:+30168333 | None:intergenic |
| ACTGCAGAACCGTTTACCGA+CGG | 0.688645 | 2.3:-30168166 | MS.gene77616:CDS |
| GAAAGTGCGGGAAAATTGAG+GGG | 0.691833 | 2.3:+30168330 | None:intergenic |
| AAACTTGCTCCAAAGAAGTG+GGG | 0.696869 | 2.3:-30164125 | MS.gene77616:CDS |
| AGAACTTCCCAATCCCTCTG+CGG | 0.699994 | 2.3:+30168085 | None:intergenic |
| GTTAAAGCATTGGAAAGTGG+TGG | 0.709004 | 2.3:-30161434 | MS.gene77616:CDS |
| GGAAACTGAGAGCTCCTGCG+AGG | 0.731866 | 2.3:+30168218 | None:intergenic |
| AAGTGGTGGCAGTCTGAGTG+CGG | 0.737711 | 2.3:-30161420 | MS.gene77616:CDS |
| GGTCACCGGAGAACCTCCGT+CGG | 0.756845 | 2.3:+30168150 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.3 | gene | 30161379 | 30168407 | 30161379 | ID=MS.gene77616 |
| chr2.3 | mRNA | 30161379 | 30168407 | 30161379 | ID=MS.gene77616.t1;Parent=MS.gene77616 |
| chr2.3 | exon | 30167981 | 30168407 | 30167981 | ID=MS.gene77616.t1.exon1;Parent=MS.gene77616.t1 |
| chr2.3 | CDS | 30167981 | 30168407 | 30167981 | ID=cds.MS.gene77616.t1;Parent=MS.gene77616.t1 |
| chr2.3 | exon | 30164313 | 30164372 | 30164313 | ID=MS.gene77616.t1.exon2;Parent=MS.gene77616.t1 |
| chr2.3 | CDS | 30164313 | 30164372 | 30164313 | ID=cds.MS.gene77616.t1;Parent=MS.gene77616.t1 |
| chr2.3 | exon | 30163904 | 30164152 | 30163904 | ID=MS.gene77616.t1.exon3;Parent=MS.gene77616.t1 |
| chr2.3 | CDS | 30163904 | 30164152 | 30163904 | ID=cds.MS.gene77616.t1;Parent=MS.gene77616.t1 |
| chr2.3 | exon | 30163723 | 30163799 | 30163723 | ID=MS.gene77616.t1.exon4;Parent=MS.gene77616.t1 |
| chr2.3 | CDS | 30163723 | 30163799 | 30163723 | ID=cds.MS.gene77616.t1;Parent=MS.gene77616.t1 |
| chr2.3 | exon | 30163200 | 30163276 | 30163200 | ID=MS.gene77616.t1.exon5;Parent=MS.gene77616.t1 |
| chr2.3 | CDS | 30163200 | 30163276 | 30163200 | ID=cds.MS.gene77616.t1;Parent=MS.gene77616.t1 |
| chr2.3 | exon | 30161636 | 30161768 | 30161636 | ID=MS.gene77616.t1.exon6;Parent=MS.gene77616.t1 |
| chr2.3 | CDS | 30161636 | 30161768 | 30161636 | ID=cds.MS.gene77616.t1;Parent=MS.gene77616.t1 |
| chr2.3 | exon | 30161379 | 30161534 | 30161379 | ID=MS.gene77616.t1.exon7;Parent=MS.gene77616.t1 |
| chr2.3 | CDS | 30161379 | 30161534 | 30161379 | ID=cds.MS.gene77616.t1;Parent=MS.gene77616.t1 |
| Gene Sequence |
| Protein sequence |