Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78084.t1 | XP_003628026.1 | 95.7 | 588 | 24 | 1 | 33 | 619 | 37 | 624 | 0.00E+00 | 1094.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78084.t1 | G7LIE5 | 95.7 | 588 | 24 | 1 | 33 | 619 | 37 | 624 | 0.0e+00 | 1094.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049419 | MS.gene78084 | -0.811363 | 7.27E-51 | -1.69E-46 |
| MS.gene049983 | MS.gene78084 | 0.815418 | 9.34E-52 | -1.69E-46 |
| MS.gene050654 | MS.gene78084 | 0.816628 | 5.01E-52 | -1.69E-46 |
| MS.gene050941 | MS.gene78084 | 0.805893 | 1.07E-49 | -1.69E-46 |
| MS.gene051800 | MS.gene78084 | 0.82722 | 1.76E-54 | -1.69E-46 |
| MS.gene052463 | MS.gene78084 | 0.805084 | 1.58E-49 | -1.69E-46 |
| MS.gene052674 | MS.gene78084 | 0.804287 | 2.32E-49 | -1.69E-46 |
| MS.gene052675 | MS.gene78084 | 0.805686 | 1.18E-49 | -1.69E-46 |
| MS.gene052677 | MS.gene78084 | 0.811556 | 6.60E-51 | -1.69E-46 |
| MS.gene052863 | MS.gene78084 | 0.800106 | 1.68E-48 | -1.69E-46 |
| MS.gene05350 | MS.gene78084 | 0.839346 | 1.67E-57 | -1.69E-46 |
| MS.gene054479 | MS.gene78084 | 0.830577 | 2.71E-55 | -1.69E-46 |
| MS.gene055864 | MS.gene78084 | 0.809259 | 2.07E-50 | -1.69E-46 |
| MS.gene056174 | MS.gene78084 | 0.811006 | 8.69E-51 | -1.69E-46 |
| MS.gene056480 | MS.gene78084 | 0.839508 | 1.52E-57 | -1.69E-46 |
| MS.gene057208 | MS.gene78084 | 0.811777 | 5.91E-51 | -1.69E-46 |
| MS.gene057855 | MS.gene78084 | 0.803636 | 3.17E-49 | -1.69E-46 |
| MS.gene058081 | MS.gene78084 | 0.844569 | 6.97E-59 | -1.69E-46 |
| MS.gene058427 | MS.gene78084 | 0.801901 | 7.24E-49 | -1.69E-46 |
| MS.gene059283 | MS.gene78084 | 0.81712 | 3.89E-52 | -1.69E-46 |
| MS.gene059439 | MS.gene78084 | 0.812863 | 3.42E-51 | -1.69E-46 |
| MS.gene059842 | MS.gene78084 | 0.815468 | 9.10E-52 | -1.69E-46 |
| MS.gene059952 | MS.gene78084 | 0.813083 | 3.06E-51 | -1.69E-46 |
| MS.gene06052 | MS.gene78084 | 0.828463 | 8.87E-55 | -1.69E-46 |
| MS.gene060932 | MS.gene78084 | 0.810854 | 9.37E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78084.t1 | MTR_8g041570 | 95.717 | 607 | 25 | 1 | 14 | 619 | 18 | 624 | 0.0 | 1190 |
| MS.gene78084.t1 | MTR_5g088750 | 38.542 | 672 | 318 | 19 | 14 | 617 | 17 | 661 | 1.78e-114 | 357 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78084.t1 | AT2G26920 | 35.789 | 665 | 321 | 24 | 14 | 615 | 22 | 643 | 2.89e-82 | 271 |
| MS.gene78084.t1 | AT5G12120 | 50.763 | 262 | 109 | 5 | 1 | 252 | 7 | 258 | 2.22e-68 | 234 |
Find 146 sgRNAs with CRISPR-Local
Find 159 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAGAATATTCCCATGTATT+TGG | 0.095875 | 8.4:-57795695 | MS.gene78084:CDS |
| AGGAAAGGTAACAAACTTTC+TGG | 0.245346 | 8.4:+57795193 | None:intergenic |
| ACATGGGAATATTCTTTATA+AGG | 0.275764 | 8.4:+57795701 | None:intergenic |
| TCTAATAACGGCAGTTGTTC+TGG | 0.279190 | 8.4:-57796784 | MS.gene78084:CDS |
| TTAGTAGATCCGAAAGTCTT+TGG | 0.294411 | 8.4:+57796964 | None:intergenic |
| TGTTCCATGATCCTGAAAAT+AGG | 0.320132 | 8.4:-57796123 | MS.gene78084:CDS |
| AAGAATATTCCCATGTATTT+GGG | 0.321676 | 8.4:-57795694 | MS.gene78084:CDS |
| TTGGCTGTTGTCATTAACTA+TGG | 0.321935 | 8.4:+57796879 | None:intergenic |
| CTCTCCTTTCCCTCTGTCTC+TGG | 0.344034 | 8.4:+57796647 | None:intergenic |
| CGTCTGCTGGATTGCGAGAT+TGG | 0.349620 | 8.4:-57795253 | MS.gene78084:CDS |
| ATGGATTGTAACATATTAGA+AGG | 0.352212 | 8.4:+57796022 | None:intergenic |
| AAGACTTCTCCAAAGACTTT+CGG | 0.360051 | 8.4:-57796973 | MS.gene78084:CDS |
| TCGAGATCGCACGCACTAGA+AGG | 0.367011 | 8.4:+57796925 | None:intergenic |
| AACATATTAGAAGGATTTGA+TGG | 0.388055 | 8.4:+57796031 | None:intergenic |
| CTTACAGTTCCACCTTCCCT+TGG | 0.389072 | 8.4:-57795530 | MS.gene78084:CDS |
| AGGCACAGCCGAGTGCCTTT+AGG | 0.397963 | 8.4:-57795970 | MS.gene78084:CDS |
| TACATACCAACTAGATGTTC+CGG | 0.406942 | 8.4:+57795832 | None:intergenic |
| TGAGAATGAGAAGGCATTGT+AGG | 0.407581 | 8.4:+57795599 | None:intergenic |
| TATGATTCTGTTTCTAATAA+CGG | 0.410813 | 8.4:-57796796 | MS.gene78084:CDS |
| TCACATGTGGATTGGAATAC+CGG | 0.413944 | 8.4:-57795458 | MS.gene78084:CDS |
| TGCAGCCTTCGCCTTCGACT+TGG | 0.424604 | 8.4:+57797008 | None:intergenic |
| AATGTCACCGTATGTTAAAA+TGG | 0.428913 | 8.4:-57795993 | MS.gene78084:CDS |
| TAATAGTTCGATGAGATCTC+AGG | 0.433345 | 8.4:-57796230 | MS.gene78084:CDS |
| CGGCAGTTGTTCTGGTGAAT+CGG | 0.434328 | 8.4:-57796776 | MS.gene78084:CDS |
| TTACAGTTCCACCTTCCCTT+GGG | 0.436626 | 8.4:-57795529 | MS.gene78084:CDS |
| TAGCCATACATCACCTGATC+TGG | 0.442603 | 8.4:+57795373 | None:intergenic |
| TTGGTATGTAAATAGTGTTC+CGG | 0.444465 | 8.4:-57795819 | MS.gene78084:CDS |
| GCTTGAACAAATTTATGCTC+TGG | 0.448008 | 8.4:-57796392 | MS.gene78084:CDS |
| CGATCCAGTCATATAAGAAC+TGG | 0.453454 | 8.4:+57795307 | None:intergenic |
| TGCTCGTCGGCATCCAGATC+AGG | 0.454135 | 8.4:-57795386 | MS.gene78084:CDS |
| ATGAACTGACACAGAAAAGA+TGG | 0.455206 | 8.4:-57796069 | MS.gene78084:CDS |
| TCAAATTACCATCGCTTACA+AGG | 0.456736 | 8.4:+57796434 | None:intergenic |
| CAAAGCCAACGTTGCTCGCT+CGG | 0.460956 | 8.4:+57796534 | None:intergenic |
| TCGACTACAACAATATAGAT+TGG | 0.471505 | 8.4:-57795418 | MS.gene78084:CDS |
| CATCCAGATCAGGTGATGTA+TGG | 0.472343 | 8.4:-57795376 | MS.gene78084:CDS |
| AGGGAAATTTCATCGTCTGC+TGG | 0.474158 | 8.4:-57795266 | MS.gene78084:CDS |
| TTCAATCACATCAGGTGGAA+TGG | 0.475195 | 8.4:-57795660 | MS.gene78084:CDS |
| TCAATCACATCAGGTGGAAT+GGG | 0.475335 | 8.4:-57795659 | MS.gene78084:CDS |
| AATCTGCCGGCCCAAATACA+TGG | 0.476192 | 8.4:+57795684 | None:intergenic |
| CATTCTTCCGTCGTTCCTAA+AGG | 0.476672 | 8.4:+57795955 | None:intergenic |
| TCAAGGAGTAGGAAGGGAAC+AGG | 0.480070 | 8.4:-57795927 | MS.gene78084:CDS |
| ATACGGTGACATTGCTTGCA+TGG | 0.482137 | 8.4:+57796003 | None:intergenic |
| AAAACTTGTGCAGAAGTTAG+TGG | 0.483211 | 8.4:-57796572 | MS.gene78084:CDS |
| TCTATGAATTCCATACCTTC+CGG | 0.483583 | 8.4:-57795851 | MS.gene78084:CDS |
| GCTCACATTCACATGTGGAT+TGG | 0.485955 | 8.4:-57795466 | MS.gene78084:CDS |
| GAAGGTGGAACTGTAAGTGC+AGG | 0.489811 | 8.4:+57795536 | None:intergenic |
| CACATGTGGATTGGAATACC+GGG | 0.491320 | 8.4:-57795457 | MS.gene78084:CDS |
| ACGAAAATACAAGGTCGAAT+GGG | 0.496043 | 8.4:-57795793 | MS.gene78084:CDS |
| TTCCGTGAGCCGTGATGTTG+AGG | 0.498017 | 8.4:+57795575 | None:intergenic |
| ACTAGATGTTCCGGAAGGTA+TGG | 0.498200 | 8.4:+57795841 | None:intergenic |
| GCTTCCTCTCATTCTTCAGT+CGG | 0.502524 | 8.4:+57796671 | None:intergenic |
| AGGAAGAATCTCATTTGAAT+CGG | 0.506944 | 8.4:-57796273 | MS.gene78084:CDS |
| GGAAAGGTAACAAACTTTCT+GGG | 0.507017 | 8.4:+57795194 | None:intergenic |
| AATATGTCCTTCCCAGCAAA+AGG | 0.507323 | 8.4:+57795224 | None:intergenic |
| TGTGCAGAAGTTAGTGGCGA+TGG | 0.510221 | 8.4:-57796566 | MS.gene78084:CDS |
| GCAGATTCTTCAATCACATC+AGG | 0.516326 | 8.4:-57795668 | MS.gene78084:CDS |
| AATCATGGCATGGGAAATGT+TGG | 0.517107 | 8.4:-57795755 | MS.gene78084:CDS |
| CTGTGAAGGTGATCTTCAAA+AGG | 0.517565 | 8.4:-57796320 | MS.gene78084:CDS |
| ATGGCCAGTTCTTATATGAC+TGG | 0.522911 | 8.4:-57795311 | MS.gene78084:CDS |
| AGCACCAGAGACAGAGGGAA+AGG | 0.524230 | 8.4:-57796651 | MS.gene78084:CDS |
| ATTACCATCGCTTACAAGGT+TGG | 0.525468 | 8.4:+57796438 | None:intergenic |
| TACGAAAATACAAGGTCGAA+TGG | 0.529380 | 8.4:-57795794 | MS.gene78084:CDS |
| ACCCTCAACATCACGGCTCA+CGG | 0.530298 | 8.4:-57795577 | MS.gene78084:CDS |
| TACCTTCCGGAACATCTAGT+TGG | 0.530968 | 8.4:-57795838 | MS.gene78084:CDS |
| GTGCGATCTCGAAACATCAT+TGG | 0.535814 | 8.4:-57796914 | MS.gene78084:CDS |
| TCGATATCGTGGCTATTTGA+AGG | 0.535817 | 8.4:-57796484 | MS.gene78084:CDS |
| ACTCGGTTGGAATTTATACC+TGG | 0.536492 | 8.4:-57796721 | MS.gene78084:CDS |
| CAAAAGAGCCCAAGGGAAGG+TGG | 0.537570 | 8.4:+57795521 | None:intergenic |
| ATGACTGGATCGCGAAATGT+TGG | 0.538183 | 8.4:-57795296 | MS.gene78084:CDS |
| TGAGAAGGCATTGTAGGTGA+AGG | 0.542455 | 8.4:+57795605 | None:intergenic |
| TTATGATCCCATTACTACAT+AGG | 0.546728 | 8.4:+57795170 | None:intergenic |
| TGAACTGACACAGAAAAGAT+GGG | 0.548313 | 8.4:-57796068 | MS.gene78084:CDS |
| GTCGAAGGCGAAGGCTGCAA+AGG | 0.548842 | 8.4:-57797004 | MS.gene78084:CDS |
| ATATTCCCATGTATTTGGGC+CGG | 0.551558 | 8.4:-57795690 | MS.gene78084:CDS |
| GTGCAGAAGTTAGTGGCGAT+GGG | 0.551834 | 8.4:-57796565 | MS.gene78084:CDS |
| TGCAAACTCATCTACTCGGT+TGG | 0.552784 | 8.4:-57796734 | MS.gene78084:CDS |
| ACTACTACAAAATCATGGCA+TGG | 0.554523 | 8.4:-57795765 | MS.gene78084:CDS |
| AATTTACTACTACAAAATCA+TGG | 0.562396 | 8.4:-57795770 | MS.gene78084:CDS |
| TGTTTGGCATCGGCGAATTG+TGG | 0.563782 | 8.4:+57795887 | None:intergenic |
| CTACTACAAAATCATGGCAT+GGG | 0.564200 | 8.4:-57795764 | MS.gene78084:CDS |
| CACTACCGAGCGAGCAACGT+TGG | 0.564651 | 8.4:-57796539 | MS.gene78084:CDS |
| ATCTGCCGGCCCAAATACAT+GGG | 0.568471 | 8.4:+57795685 | None:intergenic |
| AGAATGATTCATCAAGGAGT+AGG | 0.573842 | 8.4:-57795938 | MS.gene78084:CDS |
| ATCACATCAGGTGGAATGGG+AGG | 0.577324 | 8.4:-57795656 | MS.gene78084:CDS |
| GATCATTCTATTAGTCCTCA+AGG | 0.577446 | 8.4:-57796832 | MS.gene78084:CDS |
| GAATTCTTGCACCATGCCCC+CGG | 0.581487 | 8.4:+57795439 | None:intergenic |
| CTGGTTGTGATAACGACAGA+AGG | 0.581636 | 8.4:-57796702 | MS.gene78084:CDS |
| TCCGTGAGCCGTGATGTTGA+GGG | 0.582113 | 8.4:+57795576 | None:intergenic |
| TTCTATTAGTCCTCAAGGAA+CGG | 0.582220 | 8.4:-57796827 | MS.gene78084:CDS |
| GAGCTTGAGAAAGTTGCTGC+AGG | 0.584773 | 8.4:+57795723 | None:intergenic |
| TGATTCATCAAGGAGTAGGA+AGG | 0.585649 | 8.4:-57795934 | MS.gene78084:CDS |
| AGAGGAAGCACCAGAGACAG+AGG | 0.586818 | 8.4:-57796657 | MS.gene78084:CDS |
| AGATCAGGTGATGTATGGCT+AGG | 0.589748 | 8.4:-57795371 | MS.gene78084:CDS |
| AAAATCCAAGTCGAAGGCGA+AGG | 0.590839 | 8.4:-57797013 | MS.gene78084:CDS |
| TTGCGGTCATCAGAATCCAT+CGG | 0.592019 | 8.4:-57795501 | MS.gene78084:CDS |
| CAGTATCAATACAGCAGAGA+GGG | 0.594892 | 8.4:-57796192 | MS.gene78084:CDS |
| GGGAGGTTTCTATAAACCGA+TGG | 0.598021 | 8.4:-57795639 | MS.gene78084:CDS |
| CCGTCGTTCCTAAAGGCACT+CGG | 0.598969 | 8.4:+57795962 | None:intergenic |
| GAAATCAAAATCCAAGTCGA+AGG | 0.599824 | 8.4:-57797019 | MS.gene78084:CDS |
| GATGACCGCAAAAGAGCCCA+AGG | 0.600284 | 8.4:+57795513 | None:intergenic |
| AATAGTTCGATGAGATCTCA+GGG | 0.600975 | 8.4:-57796229 | MS.gene78084:CDS |
| GATTCTTCAATCACATCAGG+TGG | 0.601959 | 8.4:-57795665 | MS.gene78084:CDS |
| CCATTACTACATAGGAGGAA+AGG | 0.602158 | 8.4:+57795178 | None:intergenic |
| AAGCACGTTAAAATCTCAGA+AGG | 0.602359 | 8.4:-57796293 | MS.gene78084:CDS |
| TTCCGGCATACGAAAATACA+AGG | 0.602463 | 8.4:-57795802 | MS.gene78084:CDS |
| GACGGAAGAATGATTCATCA+AGG | 0.604217 | 8.4:-57795944 | MS.gene78084:CDS |
| CGATTCAAGTGTAGAGACTG+TGG | 0.605833 | 8.4:+57796097 | None:intergenic |
| CTTCTGTCGTTATCACAACC+AGG | 0.608348 | 8.4:+57796703 | None:intergenic |
| GATTCATCAAGGAGTAGGAA+GGG | 0.611644 | 8.4:-57795933 | MS.gene78084:CDS |
| AAGGTGGAACTGTAAGTGCA+GGG | 0.611990 | 8.4:+57795537 | None:intergenic |
| TGATCCCATTACTACATAGG+AGG | 0.615657 | 8.4:+57795173 | None:intergenic |
| TGAATGTGAGCTGAATGATC+TGG | 0.619752 | 8.4:+57795478 | None:intergenic |
| CGCGAAATGTTGGCACAGCG+AGG | 0.619774 | 8.4:-57795286 | MS.gene78084:CDS |
| GAAGGTGACGATGCAACCAT+CGG | 0.620053 | 8.4:+57795623 | None:intergenic |
| AAACAGCGCTGGGAATAGGA+TGG | 0.623093 | 8.4:-57795330 | MS.gene78084:CDS |
| AGAGCAGTTGTTGCCTGTGA+AGG | 0.626472 | 8.4:-57796334 | MS.gene78084:CDS |
| GAGCTGAATGATCTGGCCGA+TGG | 0.626913 | 8.4:+57795485 | None:intergenic |
| GCGAAATGTTGGCACAGCGA+GGG | 0.629324 | 8.4:-57795285 | MS.gene78084:CDS |
| CATTCTCACCCTCAACATCA+CGG | 0.630194 | 8.4:-57795584 | MS.gene78084:CDS |
| ACTACCAACCTTGTAAGCGA+TGG | 0.630386 | 8.4:-57796442 | MS.gene78084:CDS |
| ATTCAGCTCACATTCACATG+TGG | 0.630960 | 8.4:-57795471 | MS.gene78084:CDS |
| TGCTGTATTGATACTGACGC+TGG | 0.632713 | 8.4:+57796199 | None:intergenic |
| AGATCCGACTGAAGAATGAG+AGG | 0.634680 | 8.4:-57796675 | MS.gene78084:CDS |
| TTGGAGTTTAGATTGCTCGT+CGG | 0.636464 | 8.4:-57795399 | MS.gene78084:CDS |
| GAGGAAGCACCAGAGACAGA+GGG | 0.640584 | 8.4:-57796656 | MS.gene78084:CDS |
| TACTCAGACACCGTTCCTTG+AGG | 0.642758 | 8.4:+57796817 | None:intergenic |
| AATTAGAAGAATCGATATCG+TGG | 0.648950 | 8.4:-57796495 | MS.gene78084:CDS |
| TGGTTGTGATAACGACAGAA+GGG | 0.649400 | 8.4:-57796701 | MS.gene78084:CDS |
| CCGCAAAAGAGCCCAAGGGA+AGG | 0.656859 | 8.4:+57795518 | None:intergenic |
| AAGCTGCAAACTCATCTACT+CGG | 0.657093 | 8.4:-57796738 | MS.gene78084:CDS |
| GATGTGATTGAAGAATCTGC+CGG | 0.657665 | 8.4:+57795671 | None:intergenic |
| GTCCTTCCCAGCAAAAGGTG+AGG | 0.666833 | 8.4:+57795229 | None:intergenic |
| TGTTGAGGGTGAGAATGAGA+AGG | 0.667009 | 8.4:+57795590 | None:intergenic |
| CCGAGTGCCTTTAGGAACGA+CGG | 0.668148 | 8.4:-57795962 | MS.gene78084:CDS |
| ATATCGTGGCTATTTGAAGG+AGG | 0.676954 | 8.4:-57796481 | MS.gene78084:CDS |
| AAGTGCAGGGGAAGATGCAG+CGG | 0.677500 | 8.4:+57795550 | None:intergenic |
| AGGTGGAACTGTAAGTGCAG+GGG | 0.680688 | 8.4:+57795538 | None:intergenic |
| TTCAACTATTACAATGTACG+TGG | 0.683105 | 8.4:-57796157 | MS.gene78084:CDS |
| ACATGTGGATTGGAATACCG+GGG | 0.687769 | 8.4:-57795456 | MS.gene78084:CDS |
| TTGGCTTTGAAGTTAAACAA+CGG | 0.688283 | 8.4:-57796520 | MS.gene78084:CDS |
| GAACTGACACAGAAAAGATG+GGG | 0.693814 | 8.4:-57796067 | MS.gene78084:CDS |
| GTCACCGTATGTTAAAATGG+AGG | 0.695807 | 8.4:-57795990 | MS.gene78084:CDS |
| TACCAACTAGATGTTCCGGA+AGG | 0.699009 | 8.4:+57795836 | None:intergenic |
| TCAGTATCAATACAGCAGAG+AGG | 0.701867 | 8.4:-57796193 | MS.gene78084:CDS |
| CATGTGGATTGGAATACCGG+GGG | 0.716378 | 8.4:-57795455 | MS.gene78084:CDS |
| ATGACCGCAAAAGAGCCCAA+GGG | 0.718537 | 8.4:+57795514 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTTACTACTACAAAATCA+TGG | - | chr8.4:57796435-57796454 | MS.gene78084:CDS | 20.0% |
| !!! | AGAATTCAGATAATTTTGTT+TGG | + | chr8.4:57796337-57796356 | None:intergenic | 20.0% |
| !!! | TATGATTCTGTTTCTAATAA+CGG | - | chr8.4:57795409-57795428 | MS.gene78084:CDS | 20.0% |
| !!! | TTTCATTTATTTTTGCGAAT+TGG | + | chr8.4:57795348-57795367 | None:intergenic | 20.0% |
| ! | AAAGAATATTCCCATGTATT+TGG | - | chr8.4:57796510-57796529 | MS.gene78084:CDS | 25.0% |
| ! | AACATATTAGAAGGATTTGA+TGG | + | chr8.4:57796177-57796196 | None:intergenic | 25.0% |
| ! | AAGAATATTCCCATGTATTT+GGG | - | chr8.4:57796511-57796530 | MS.gene78084:CDS | 25.0% |
| ! | ACATGGGAATATTCTTTATA+AGG | + | chr8.4:57796507-57796526 | None:intergenic | 25.0% |
| !! | ATGGATTGTAACATATTAGA+AGG | + | chr8.4:57796186-57796205 | None:intergenic | 25.0% |
| AATGTCACCGTATGTTAAAA+TGG | - | chr8.4:57796212-57796231 | MS.gene78084:CDS | 30.0% | |
| AATTAGAAGAATCGATATCG+TGG | - | chr8.4:57795710-57795729 | MS.gene78084:CDS | 30.0% | |
| AGGAAGAATCTCATTTGAAT+CGG | - | chr8.4:57795932-57795951 | MS.gene78084:CDS | 30.0% | |
| TCGACTACAACAATATAGAT+TGG | - | chr8.4:57796787-57796806 | MS.gene78084:CDS | 30.0% | |
| TTCAACTATTACAATGTACG+TGG | - | chr8.4:57796048-57796067 | MS.gene78084:CDS | 30.0% | |
| TTGGTATGTAAATAGTGTTC+CGG | - | chr8.4:57796386-57796405 | MS.gene78084:CDS | 30.0% | |
| !! | CAGATAATTTTGTTTGGCAT+CGG | + | chr8.4:57796331-57796350 | None:intergenic | 30.0% |
| !! | TTGGCTTTGAAGTTAAACAA+CGG | - | chr8.4:57795685-57795704 | MS.gene78084:CDS | 30.0% |
| AAAACTTGTGCAGAAGTTAG+TGG | - | chr8.4:57795633-57795652 | MS.gene78084:CDS | 35.0% | |
| AAGACTTCTCCAAAGACTTT+CGG | - | chr8.4:57795232-57795251 | MS.gene78084:CDS | 35.0% | |
| AAGCACGTTAAAATCTCAGA+AGG | - | chr8.4:57795912-57795931 | MS.gene78084:CDS | 35.0% | |
| AATAGTTCGATGAGATCTCA+GGG | - | chr8.4:57795976-57795995 | MS.gene78084:CDS | 35.0% | |
| ACGAAAATACAAGGTCGAAT+GGG | - | chr8.4:57796412-57796431 | MS.gene78084:CDS | 35.0% | |
| ACTACTACAAAATCATGGCA+TGG | - | chr8.4:57796440-57796459 | MS.gene78084:CDS | 35.0% | |
| AGAATGATTCATCAAGGAGT+AGG | - | chr8.4:57796267-57796286 | MS.gene78084:CDS | 35.0% | |
| AGGAAAGGTAACAAACTTTC+TGG | + | chr8.4:57797015-57797034 | None:intergenic | 35.0% | |
| ATGAACTGACACAGAAAAGA+TGG | - | chr8.4:57796136-57796155 | MS.gene78084:CDS | 35.0% | |
| CTACTACAAAATCATGGCAT+GGG | - | chr8.4:57796441-57796460 | MS.gene78084:CDS | 35.0% | |
| GAAATCAAAATCCAAGTCGA+AGG | - | chr8.4:57795186-57795205 | MS.gene78084:CDS | 35.0% | |
| GATCATTCTATTAGTCCTCA+AGG | - | chr8.4:57795373-57795392 | MS.gene78084:CDS | 35.0% | |
| GCTTGAACAAATTTATGCTC+TGG | - | chr8.4:57795813-57795832 | MS.gene78084:CDS | 35.0% | |
| GGAAAGGTAACAAACTTTCT+GGG | + | chr8.4:57797014-57797033 | None:intergenic | 35.0% | |
| TAATAGTTCGATGAGATCTC+AGG | - | chr8.4:57795975-57795994 | MS.gene78084:CDS | 35.0% | |
| TACATACCAACTAGATGTTC+CGG | + | chr8.4:57796376-57796395 | None:intergenic | 35.0% | |
| TACGAAAATACAAGGTCGAA+TGG | - | chr8.4:57796411-57796430 | MS.gene78084:CDS | 35.0% | |
| TCAAATTACCATCGCTTACA+AGG | + | chr8.4:57795774-57795793 | None:intergenic | 35.0% | |
| TCTATGAATTCCATACCTTC+CGG | - | chr8.4:57796354-57796373 | MS.gene78084:CDS | 35.0% | |
| TGAACTGACACAGAAAAGAT+GGG | - | chr8.4:57796137-57796156 | MS.gene78084:CDS | 35.0% | |
| TGTTCCATGATCCTGAAAAT+AGG | - | chr8.4:57796082-57796101 | MS.gene78084:CDS | 35.0% | |
| TTAGTAGATCCGAAAGTCTT+TGG | + | chr8.4:57795244-57795263 | None:intergenic | 35.0% | |
| TTCTATTAGTCCTCAAGGAA+CGG | - | chr8.4:57795378-57795397 | MS.gene78084:CDS | 35.0% | |
| TTGGCTGTTGTCATTAACTA+TGG | + | chr8.4:57795329-57795348 | None:intergenic | 35.0% | |
| !! | GATTCCTATTTTCAGGATCA+TGG | + | chr8.4:57796089-57796108 | None:intergenic | 35.0% |
| !! | TGTGCCTCCATTTTAACATA+CGG | + | chr8.4:57796222-57796241 | None:intergenic | 35.0% |
| AAGCTGCAAACTCATCTACT+CGG | - | chr8.4:57795467-57795486 | MS.gene78084:CDS | 40.0% | |
| AATATGTCCTTCCCAGCAAA+AGG | + | chr8.4:57796984-57797003 | None:intergenic | 40.0% | |
| AATCATGGCATGGGAAATGT+TGG | - | chr8.4:57796450-57796469 | MS.gene78084:CDS | 40.0% | |
| ACTCGGTTGGAATTTATACC+TGG | - | chr8.4:57795484-57795503 | MS.gene78084:CDS | 40.0% | |
| ATATCGTGGCTATTTGAAGG+AGG | - | chr8.4:57795724-57795743 | MS.gene78084:CDS | 40.0% | |
| ATATTCCCATGTATTTGGGC+CGG | - | chr8.4:57796515-57796534 | MS.gene78084:CDS | 40.0% | |
| ATGGCCAGTTCTTATATGAC+TGG | - | chr8.4:57796894-57796913 | MS.gene78084:CDS | 40.0% | |
| ATTACCATCGCTTACAAGGT+TGG | + | chr8.4:57795770-57795789 | None:intergenic | 40.0% | |
| ATTCAGCTCACATTCACATG+TGG | - | chr8.4:57796734-57796753 | MS.gene78084:CDS | 40.0% | |
| CAGTATCAATACAGCAGAGA+GGG | - | chr8.4:57796013-57796032 | MS.gene78084:CDS | 40.0% | |
| CGATCCAGTCATATAAGAAC+TGG | + | chr8.4:57796901-57796920 | None:intergenic | 40.0% | |
| CTGTGAAGGTGATCTTCAAA+AGG | - | chr8.4:57795885-57795904 | MS.gene78084:CDS | 40.0% | |
| GAACTGACACAGAAAAGATG+GGG | - | chr8.4:57796138-57796157 | MS.gene78084:CDS | 40.0% | |
| GACGGAAGAATGATTCATCA+AGG | - | chr8.4:57796261-57796280 | MS.gene78084:CDS | 40.0% | |
| GATGTGATTGAAGAATCTGC+CGG | + | chr8.4:57796537-57796556 | None:intergenic | 40.0% | |
| GATTCATCAAGGAGTAGGAA+GGG | - | chr8.4:57796272-57796291 | MS.gene78084:CDS | 40.0% | |
| GATTCTTCAATCACATCAGG+TGG | - | chr8.4:57796540-57796559 | MS.gene78084:CDS | 40.0% | |
| GCAGATTCTTCAATCACATC+AGG | - | chr8.4:57796537-57796556 | MS.gene78084:CDS | 40.0% | |
| GTCACCGTATGTTAAAATGG+AGG | - | chr8.4:57796215-57796234 | MS.gene78084:CDS | 40.0% | |
| TCAATCACATCAGGTGGAAT+GGG | - | chr8.4:57796546-57796565 | MS.gene78084:CDS | 40.0% | |
| TCAGTATCAATACAGCAGAG+AGG | - | chr8.4:57796012-57796031 | MS.gene78084:CDS | 40.0% | |
| TCGATATCGTGGCTATTTGA+AGG | - | chr8.4:57795721-57795740 | MS.gene78084:CDS | 40.0% | |
| TCTAATAACGGCAGTTGTTC+TGG | - | chr8.4:57795421-57795440 | MS.gene78084:CDS | 40.0% | |
| TGAATGTGAGCTGAATGATC+TGG | + | chr8.4:57796730-57796749 | None:intergenic | 40.0% | |
| TGATTCATCAAGGAGTAGGA+AGG | - | chr8.4:57796271-57796290 | MS.gene78084:CDS | 40.0% | |
| TTCAATCACATCAGGTGGAA+TGG | - | chr8.4:57796545-57796564 | MS.gene78084:CDS | 40.0% | |
| TTCCGGCATACGAAAATACA+AGG | - | chr8.4:57796403-57796422 | MS.gene78084:CDS | 40.0% | |
| TTGGAGTTTAGATTGCTCGT+CGG | - | chr8.4:57796806-57796825 | MS.gene78084:CDS | 40.0% | |
| ! | GACCTTGTATTTTCGTATGC+CGG | + | chr8.4:57796408-57796427 | None:intergenic | 40.0% |
| ! | GACTGTGGATTCCTATTTTC+AGG | + | chr8.4:57796096-57796115 | None:intergenic | 40.0% |
| ! | TGGTTGTGATAACGACAGAA+GGG | - | chr8.4:57795504-57795523 | MS.gene78084:CDS | 40.0% |
| !! | CTTTTGAAGATCACCTTCAC+AGG | + | chr8.4:57795887-57795906 | None:intergenic | 40.0% |
| !! | TCACATGTGGATTGGAATAC+CGG | - | chr8.4:57796747-57796766 | MS.gene78084:CDS | 40.0% |
| !! | TGAGAATGAGAAGGCATTGT+AGG | + | chr8.4:57796609-57796628 | None:intergenic | 40.0% |
| AAAATCCAAGTCGAAGGCGA+AGG | - | chr8.4:57795192-57795211 | MS.gene78084:CDS | 45.0% | |
| AAGGTGGAACTGTAAGTGCA+GGG | + | chr8.4:57796671-57796690 | None:intergenic | 45.0% | |
| ACTACCAACCTTGTAAGCGA+TGG | - | chr8.4:57795763-57795782 | MS.gene78084:CDS | 45.0% | |
| ACTAGATGTTCCGGAAGGTA+TGG | + | chr8.4:57796367-57796386 | None:intergenic | 45.0% | |
| AGATCAGGTGATGTATGGCT+AGG | - | chr8.4:57796834-57796853 | MS.gene78084:CDS | 45.0% | |
| AGATCCGACTGAAGAATGAG+AGG | - | chr8.4:57795530-57795549 | MS.gene78084:CDS | 45.0% | |
| AGGGAAATTTCATCGTCTGC+TGG | - | chr8.4:57796939-57796958 | MS.gene78084:CDS | 45.0% | |
| ATACGGTGACATTGCTTGCA+TGG | + | chr8.4:57796205-57796224 | None:intergenic | 45.0% | |
| ATGACTGGATCGCGAAATGT+TGG | - | chr8.4:57796909-57796928 | MS.gene78084:CDS | 45.0% | |
| CATCCAGATCAGGTGATGTA+TGG | - | chr8.4:57796829-57796848 | MS.gene78084:CDS | 45.0% | |
| CATTCTCACCCTCAACATCA+CGG | - | chr8.4:57796621-57796640 | MS.gene78084:CDS | 45.0% | |
| CATTCTTCCGTCGTTCCTAA+AGG | + | chr8.4:57796253-57796272 | None:intergenic | 45.0% | |
| CGATTCAAGTGTAGAGACTG+TGG | + | chr8.4:57796111-57796130 | None:intergenic | 45.0% | |
| CTTCTGTCGTTATCACAACC+AGG | + | chr8.4:57795505-57795524 | None:intergenic | 45.0% | |
| GCTCACATTCACATGTGGAT+TGG | - | chr8.4:57796739-57796758 | MS.gene78084:CDS | 45.0% | |
| GCTTCCTCTCATTCTTCAGT+CGG | + | chr8.4:57795537-57795556 | None:intergenic | 45.0% | |
| GGGAGGTTTCTATAAACCGA+TGG | - | chr8.4:57796566-57796585 | MS.gene78084:CDS | 45.0% | |
| GTGCGATCTCGAAACATCAT+TGG | - | chr8.4:57795291-57795310 | MS.gene78084:CDS | 45.0% | |
| TACCAACTAGATGTTCCGGA+AGG | + | chr8.4:57796372-57796391 | None:intergenic | 45.0% | |
| TACCTTCCGGAACATCTAGT+TGG | - | chr8.4:57796367-57796386 | MS.gene78084:CDS | 45.0% | |
| TAGCCATACATCACCTGATC+TGG | + | chr8.4:57796835-57796854 | None:intergenic | 45.0% | |
| TGCAAACTCATCTACTCGGT+TGG | - | chr8.4:57795471-57795490 | MS.gene78084:CDS | 45.0% | |
| TGTTGAGGGTGAGAATGAGA+AGG | + | chr8.4:57796618-57796637 | None:intergenic | 45.0% | |
| TTACAGTTCCACCTTCCCTT+GGG | - | chr8.4:57796676-57796695 | MS.gene78084:CDS | 45.0% | |
| TTGCGGTCATCAGAATCCAT+CGG | - | chr8.4:57796704-57796723 | MS.gene78084:CDS | 45.0% | |
| ! | ATTGGACCTCACCTTTTGCT+GGG | - | chr8.4:57796970-57796989 | MS.gene78084:CDS | 45.0% |
| ! | CTGGTTGTGATAACGACAGA+AGG | - | chr8.4:57795503-57795522 | MS.gene78084:CDS | 45.0% |
| ! | TGAAAAACAGCGCTGGGAAT+AGG | - | chr8.4:57796871-57796890 | MS.gene78084:CDS | 45.0% |
| ! | TGCTGTATTGATACTGACGC+TGG | + | chr8.4:57796009-57796028 | None:intergenic | 45.0% |
| !! | ACATGTGGATTGGAATACCG+GGG | - | chr8.4:57796749-57796768 | MS.gene78084:CDS | 45.0% |
| !! | CACATGTGGATTGGAATACC+GGG | - | chr8.4:57796748-57796767 | MS.gene78084:CDS | 45.0% |
| !! | TGAGAAGGCATTGTAGGTGA+AGG | + | chr8.4:57796603-57796622 | None:intergenic | 45.0% |
| AATCTGCCGGCCCAAATACA+TGG | + | chr8.4:57796524-57796543 | None:intergenic | 50.0% | |
| AGAGCAGTTGTTGCCTGTGA+AGG | - | chr8.4:57795871-57795890 | MS.gene78084:CDS | 50.0% | |
| AGGTGGAACTGTAAGTGCAG+GGG | + | chr8.4:57796670-57796689 | None:intergenic | 50.0% | |
| ATCACATCAGGTGGAATGGG+AGG | - | chr8.4:57796549-57796568 | MS.gene78084:CDS | 50.0% | |
| ATCTGCCGGCCCAAATACAT+GGG | + | chr8.4:57796523-57796542 | None:intergenic | 50.0% | |
| ATGACCGCAAAAGAGCCCAA+GGG | + | chr8.4:57796694-57796713 | None:intergenic | 50.0% | |
| CGGCAGTTGTTCTGGTGAAT+CGG | - | chr8.4:57795429-57795448 | MS.gene78084:CDS | 50.0% | |
| CGTCGTTGAAAAACAGCGCT+GGG | - | chr8.4:57796865-57796884 | MS.gene78084:CDS | 50.0% | |
| CTTACAGTTCCACCTTCCCT+TGG | - | chr8.4:57796675-57796694 | MS.gene78084:CDS | 50.0% | |
| GAAGGTGACGATGCAACCAT+CGG | + | chr8.4:57796585-57796604 | None:intergenic | 50.0% | |
| GAAGGTGGAACTGTAAGTGC+AGG | + | chr8.4:57796672-57796691 | None:intergenic | 50.0% | |
| GAGCTTGAGAAAGTTGCTGC+AGG | + | chr8.4:57796485-57796504 | None:intergenic | 50.0% | |
| GTGCAGAAGTTAGTGGCGAT+GGG | - | chr8.4:57795640-57795659 | MS.gene78084:CDS | 50.0% | |
| TACTCAGACACCGTTCCTTG+AGG | + | chr8.4:57795391-57795410 | None:intergenic | 50.0% | |
| TCAAGGAGTAGGAAGGGAAC+AGG | - | chr8.4:57796278-57796297 | MS.gene78084:CDS | 50.0% | |
| TCGTCGTTGAAAAACAGCGC+TGG | - | chr8.4:57796864-57796883 | MS.gene78084:CDS | 50.0% | |
| TGTGCAGAAGTTAGTGGCGA+TGG | - | chr8.4:57795639-57795658 | MS.gene78084:CDS | 50.0% | |
| ! | AAACAGCGCTGGGAATAGGA+TGG | - | chr8.4:57796875-57796894 | MS.gene78084:CDS | 50.0% |
| ! | GATTGGACCTCACCTTTTGC+TGG | - | chr8.4:57796969-57796988 | MS.gene78084:CDS | 50.0% |
| !! | CATGTGGATTGGAATACCGG+GGG | - | chr8.4:57796750-57796769 | MS.gene78084:CDS | 50.0% |
| !! | TGTTTGGCATCGGCGAATTG+TGG | + | chr8.4:57796321-57796340 | None:intergenic | 50.0% |
| AAGTGCAGGGGAAGATGCAG+CGG | + | chr8.4:57796658-57796677 | None:intergenic | 55.0% | |
| ACCCTCAACATCACGGCTCA+CGG | - | chr8.4:57796628-57796647 | MS.gene78084:CDS | 55.0% | |
| AGCACCAGAGACAGAGGGAA+AGG | - | chr8.4:57795554-57795573 | MS.gene78084:CDS | 55.0% | |
| CAAAAGAGCCCAAGGGAAGG+TGG | + | chr8.4:57796687-57796706 | None:intergenic | 55.0% | |
| CAAAGCCAACGTTGCTCGCT+CGG | + | chr8.4:57795674-57795693 | None:intergenic | 55.0% | |
| CGTCTGCTGGATTGCGAGAT+TGG | - | chr8.4:57796952-57796971 | MS.gene78084:CDS | 55.0% | |
| CTCTCCTTTCCCTCTGTCTC+TGG | + | chr8.4:57795561-57795580 | None:intergenic | 55.0% | |
| GAATTCTTGCACCATGCCCC+CGG | + | chr8.4:57796769-57796788 | None:intergenic | 55.0% | |
| GAGCTGAATGATCTGGCCGA+TGG | + | chr8.4:57796723-57796742 | None:intergenic | 55.0% | |
| GATGACCGCAAAAGAGCCCA+AGG | + | chr8.4:57796695-57796714 | None:intergenic | 55.0% | |
| GCGAAATGTTGGCACAGCGA+GGG | - | chr8.4:57796920-57796939 | MS.gene78084:CDS | 55.0% | |
| GTCCTTCCCAGCAAAAGGTG+AGG | + | chr8.4:57796979-57796998 | None:intergenic | 55.0% | |
| TCCGTGAGCCGTGATGTTGA+GGG | + | chr8.4:57796632-57796651 | None:intergenic | 55.0% | |
| TCGAGATCGCACGCACTAGA+AGG | + | chr8.4:57795283-57795302 | None:intergenic | 55.0% | |
| TTCCGTGAGCCGTGATGTTG+AGG | + | chr8.4:57796633-57796652 | None:intergenic | 55.0% | |
| ! | CCGAGTGCCTTTAGGAACGA+CGG | - | chr8.4:57796243-57796262 | MS.gene78084:CDS | 55.0% |
| ! | CCTTCCCTTGGGCTCTTTTG+CGG | - | chr8.4:57796687-57796706 | MS.gene78084:CDS | 55.0% |
| ! | GACCTCACCTTTTGCTGGGA+AGG | - | chr8.4:57796974-57796993 | MS.gene78084:CDS | 55.0% |
| !! | AGAGGAAGCACCAGAGACAG+AGG | - | chr8.4:57795548-57795567 | MS.gene78084:CDS | 55.0% |
| !! | CCGTCGTTCCTAAAGGCACT+CGG | + | chr8.4:57796246-57796265 | None:intergenic | 55.0% |
| !! | GAGGAAGCACCAGAGACAGA+GGG | - | chr8.4:57795549-57795568 | MS.gene78084:CDS | 55.0% |
| AGGCACAGCCGAGTGCCTTT+AGG | - | chr8.4:57796235-57796254 | MS.gene78084:CDS | 60.0% | |
| CACTACCGAGCGAGCAACGT+TGG | - | chr8.4:57795666-57795685 | MS.gene78084:CDS | 60.0% | |
| CCGCAAAAGAGCCCAAGGGA+AGG | + | chr8.4:57796690-57796709 | None:intergenic | 60.0% | |
| CGCGAAATGTTGGCACAGCG+AGG | - | chr8.4:57796919-57796938 | MS.gene78084:CDS | 60.0% | |
| GGATTGGAATACCGGGGGCA+TGG | - | chr8.4:57796755-57796774 | MS.gene78084:CDS | 60.0% | |
| GTCGAAGGCGAAGGCTGCAA+AGG | - | chr8.4:57795201-57795220 | MS.gene78084:CDS | 60.0% | |
| TGCAGCCTTCGCCTTCGACT+TGG | + | chr8.4:57795200-57795219 | None:intergenic | 60.0% | |
| TGCTCGTCGGCATCCAGATC+AGG | - | chr8.4:57796819-57796838 | MS.gene78084:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 57795184 | 57797043 | 57795184 | ID=MS.gene78084 |
| chr8.4 | mRNA | 57795184 | 57797043 | 57795184 | ID=MS.gene78084.t1;Parent=MS.gene78084 |
| chr8.4 | exon | 57795184 | 57797043 | 57795184 | ID=MS.gene78084.t1.exon1;Parent=MS.gene78084.t1 |
| chr8.4 | CDS | 57795184 | 57797043 | 57795184 | ID=cds.MS.gene78084.t1;Parent=MS.gene78084.t1 |
| Gene Sequence |
| Protein sequence |
