AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene78560

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene78560.t1 MTR_5g043210 97.683 259 6 0 7 265 60 318 0.0 533
MS.gene78560.t1 MTR_5g043210 97.683 259 6 0 7 265 5 263 0.0 533
MS.gene78560.t1 MTR_6g013425 68.093 257 81 1 10 265 60 316 2.30e-129 369
MS.gene78560.t1 MTR_1g013820 49.798 247 122 2 20 265 9 254 2.60e-86 258
MS.gene78560.t1 MTR_1g013820 49.798 247 122 2 20 265 29 274 3.41e-86 258
MS.gene78560.t1 MTR_1g013820 49.798 247 120 3 20 265 9 252 2.96e-84 252
MS.gene78560.t1 MTR_3g106000 48.178 247 123 4 20 265 32 274 1.15e-72 224
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene78560.t1 AT1G69370 71.705 258 72 1 9 265 59 316 8.05e-138 390
MS.gene78560.t1 AT3G29200 66.667 273 83 2 1 265 68 340 2.35e-131 375
MS.gene78560.t1 AT5G10870 53.968 252 114 2 16 265 14 265 2.11e-92 273

Find 47 sgRNAs with CRISPR-Local

Find 150 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTTTGATTGGCAATCTTTA+TGG 0.174323 5.2:-32914908 MS.gene78560:CDS
AATGCTTACTTTCGCTTTAA+TGG 0.176834 5.2:+32915164 None:intergenic
TAGCATAATATTCAATCTTT+TGG 0.217061 5.2:-32917057 MS.gene78560:CDS
TGGCTCTTTGGTTGAATATA+TGG 0.255007 5.2:-32916970 MS.gene78560:CDS
CTGTGACACTCTTTGCTTGC+AGG 0.316286 5.2:-32915607 MS.gene78560:intron
TCAATCTAAACAATATGATT+TGG 0.330892 5.2:-32915704 MS.gene78560:CDS
TAAGAATCTCCTTCCAAGAT+TGG 0.348931 5.2:-32915670 MS.gene78560:CDS
AAAATCAAGTCAGGTTTGAT+TGG 0.354826 5.2:-32914920 MS.gene78560:CDS
CAAAACCTGTGGGTACTTCA+TGG 0.359840 5.2:+32916759 None:intergenic
ATTGTTTAGATTGATTGAAT+TGG 0.370604 5.2:+32915713 None:intergenic
GGGAAGAAAGCATGCTCATC+CGG 0.371457 5.2:+32916811 None:intergenic
GCATCAGACACTCTTTGATT+AGG 0.407192 5.2:-32917088 MS.gene78560:CDS
TTGGCAATCTTTATGGTGAA+TGG 0.422641 5.2:-32914901 MS.gene78560:CDS
TTTAATCAAGTCTTCGCAAC+AGG 0.425055 5.2:+32914843 None:intergenic
CTCTCAAAGAGAATCCACTA+TGG 0.434884 5.2:-32915240 MS.gene78560:CDS
AGTGGCTCAGGTAAGTTTGT+AGG 0.444233 5.2:+32916790 None:intergenic
ACAGGACAGGAAACGGCTAC+TGG 0.470469 5.2:-32915062 MS.gene78560:intron
CCTGTATATAAAATCAAGTC+AGG 0.484671 5.2:-32914929 MS.gene78560:CDS
ATGGGAGGAAGCAGTGGCTC+AGG 0.493888 5.2:+32916778 None:intergenic
CAGACACTCTTTGATTAGGC+AGG 0.494601 5.2:-32917084 MS.gene78560:CDS
GTGGCTCAGGTAAGTTTGTA+GGG 0.497372 5.2:+32916791 None:intergenic
TTGGTAAAAGCAGGAGATGA+TGG 0.500955 5.2:-32915651 MS.gene78560:CDS
AGAATGCCCTTCTGTATATG+AGG 0.503112 5.2:-32915190 MS.gene78560:CDS
GACAAAGCGTTCTTCTCAGA+TGG 0.504962 5.2:-32916999 MS.gene78560:CDS
ATGATTCACAGGACAGGAAA+CGG 0.519147 5.2:-32915069 MS.gene78560:intron
AAAACCTGTGGGTACTTCAT+GGG 0.520958 5.2:+32916760 None:intergenic
ACCTGCACTTCTTTCGTGAG+AGG 0.526046 5.2:+32914872 None:intergenic
GCCTCTCACGAAAGAAGTGC+AGG 0.528449 5.2:-32914873 MS.gene78560:CDS
GCAGAAGAGAGTAGAAATGA+AGG 0.532582 5.2:-32915005 MS.gene78560:CDS
CTTCCAAGATTGGTAAAAGC+AGG 0.534609 5.2:-32915660 MS.gene78560:CDS
CTATGGAAAATTTGTTGCTG+AGG 0.538176 5.2:-32915223 MS.gene78560:CDS
AACTGAAAAGCTTCATGCAC+AGG 0.552581 5.2:-32916940 MS.gene78560:intron
AAACAAGAGTGGATGAAAGT+AGG 0.554721 5.2:-32917127 MS.gene78560:CDS
TACTTCATGGGAGGAAGCAG+TGG 0.556908 5.2:+32916772 None:intergenic
GTGGTAAAGATCAATGAAGC+AGG 0.562259 5.2:-32914965 MS.gene78560:CDS
GGAAGAAAGCATGCTCATCC+GGG 0.562268 5.2:+32916812 None:intergenic
TCCTCCCATGAAGTACCCAC+AGG 0.566296 5.2:-32916764 MS.gene78560:intron
GGCAAGAACATTCAGTCAAG+TGG 0.590032 5.2:-32914984 MS.gene78560:CDS
ATGGCAGCCTCATATACAGA+AGG 0.592543 5.2:+32915183 None:intergenic
GGTGGGAAGATATACGAGCC+CGG 0.615212 5.2:-32916830 MS.gene78560:CDS
ACCTGTGGGTACTTCATGGG+AGG 0.630361 5.2:+32916763 None:intergenic
ACATTTAGGTAAAACAAGAG+TGG 0.643672 5.2:-32917138 MS.gene78560:CDS
GTTGTTGACATATGAATCAG+TGG 0.647423 5.2:-32915038 MS.gene78560:CDS
TGGCAGCCTCATATACAGAA+GGG 0.649292 5.2:+32915184 None:intergenic
GCAGGAGATGATGGTAACAG+TGG 0.655534 5.2:-32915642 MS.gene78560:CDS
TGGTAACAGTGGATCAGCTG+CGG 0.692102 5.2:-32915631 MS.gene78560:CDS
GTTGACATATGAATCAGTGG+AGG 0.696907 5.2:-32915035 MS.gene78560:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATAATTTATAACAAAACA+CGG + chr5.2:32916833-32916852 None:intergenic 10.0%
!! AAGAGATAATGATAATATAA+TGG + chr5.2:32916174-32916193 None:intergenic 15.0%
!! AATTAATATAGTCTACAAAA+AGG + chr5.2:32915437-32915456 None:intergenic 15.0%
!! ATAGTAATATAAATCTTAGA+CGG - chr5.2:32914864-32914883 MS.gene78560:CDS 15.0%
!! GATATATTATTACTGTTATA+CGG - chr5.2:32916784-32916803 MS.gene78560:CDS 15.0%
!! TTATAAATTATAATCGTTAC+AGG - chr5.2:32916840-32916859 MS.gene78560:intron 15.0%
!! ATTGTTTAGATTGATTGAAT+TGG + chr5.2:32916395-32916414 None:intergenic 20.0%
!! CTACAAAATTTATCTTGATA+TGG - chr5.2:32917007-32917026 MS.gene78560:CDS 20.0%
!! TCAATCTAAACAATATGATT+TGG - chr5.2:32916401-32916420 MS.gene78560:intron 20.0%
!! TGAAATTACATGTTATAAAG+TGG + chr5.2:32916150-32916169 None:intergenic 20.0%
!!! AATTTTATGAGTACTTTCAT+CGG - chr5.2:32916045-32916064 MS.gene78560:intron 20.0%
!!! TAGCATAATATTCAATCTTT+TGG - chr5.2:32915048-32915067 MS.gene78560:CDS 20.0%
!!! TTATCATTTTCAACAAAGTT+AGG - chr5.2:32916555-32916574 MS.gene78560:intron 20.0%
!!! TTTTTTAGGCAATGAAAATA+TGG - chr5.2:32915196-32915215 MS.gene78560:CDS 20.0%
! AAAAGGTCAATAAGATAATC+TGG + chr5.2:32915873-32915892 None:intergenic 25.0%
! AAGAGGAATTCAAATTTACT+TGG - chr5.2:32915684-32915703 MS.gene78560:CDS 25.0%
! AGATAAAATTTCAAAACCTG+TGG + chr5.2:32915360-32915379 None:intergenic 25.0%
! ATAATCTCATGCAAAGTAAA+AGG + chr5.2:32916705-32916724 None:intergenic 25.0%
! CATATGACTAGTGTAATAAA+AGG + chr5.2:32915890-32915909 None:intergenic 25.0%
! GACATAGGTAGTATATTATA+AGG + chr5.2:32916973-32916992 None:intergenic 25.0%
! GATAAAATTTCAAAACCTGT+GGG + chr5.2:32915359-32915378 None:intergenic 25.0%
! GTAATAGTAGATGATGAATA+TGG - chr5.2:32915568-32915587 MS.gene78560:intron 25.0%
! GTACTCATAAAATTCTTAGT+AGG + chr5.2:32916039-32916058 None:intergenic 25.0%
! GTTATGTATACAAGAGAAAA+TGG + chr5.2:32916353-32916372 None:intergenic 25.0%
! TAAAATATGTACTGTAACAC+TGG + chr5.2:32916538-32916557 None:intergenic 25.0%
! TCAATATAGACAAAGAAATG+AGG + chr5.2:32916654-32916673 None:intergenic 25.0%
! TCTTGAGCATTATAATAGAA+GGG + chr5.2:32915668-32915687 None:intergenic 25.0%
!! AATATCTGACAGTTTCTTTT+TGG - chr5.2:32914939-32914958 MS.gene78560:CDS 25.0%
!! GAAAATGGTTTTTAACCTTT+TGG - chr5.2:32915512-32915531 MS.gene78560:intron 25.0%
!! GTGTGATCTACAATTAATTT+TGG + chr5.2:32915952-32915971 None:intergenic 25.0%
!! TACCAACTTCTGTTTAAAAT+GGG - chr5.2:32915629-32915648 MS.gene78560:CDS 25.0%
!! TTTTGCAATATTTTCCTGAT+AGG - chr5.2:32916309-32916328 MS.gene78560:intron 25.0%
!! TTTTGTAGTGTTCCAATATA+AGG + chr5.2:32916995-32917014 None:intergenic 25.0%
!!! TTCTCTTATTTTGACAAGTT+TGG - chr5.2:32915476-32915495 MS.gene78560:intron 25.0%
AAAATCAAGTCAGGTTTGAT+TGG - chr5.2:32917185-32917204 MS.gene78560:intron 30.0%
AATGCTTACTTTCGCTTTAA+TGG + chr5.2:32916944-32916963 None:intergenic 30.0%
ACATTTAGGTAAAACAAGAG+TGG - chr5.2:32914967-32914986 MS.gene78560:CDS 30.0%
ATCTGGTGATATACAAAAGA+CGG + chr5.2:32915856-32915875 None:intergenic 30.0%
CCTGTATATAAAATCAAGTC+AGG - chr5.2:32917176-32917195 MS.gene78560:intron 30.0%
CTACCAACTTCTGTTTAAAA+TGG - chr5.2:32915628-32915647 MS.gene78560:CDS 30.0%
CTCTTGAGCATTATAATAGA+AGG + chr5.2:32915669-32915688 None:intergenic 30.0%
CTTCCCACCTAATTTAAAAA+GGG + chr5.2:32915264-32915283 None:intergenic 30.0%
CTTCTATTATAATGCTCAAG+AGG - chr5.2:32915667-32915686 MS.gene78560:CDS 30.0%
GTGATTAAAATTTGTGTGCT+TGG - chr5.2:32915235-32915254 MS.gene78560:CDS 30.0%
TACTACCTATGTCCTTATAT+TGG - chr5.2:32916980-32916999 MS.gene78560:CDS 30.0%
TCTTCCCACCTAATTTAAAA+AGG + chr5.2:32915265-32915284 None:intergenic 30.0%
TGTATACAAGAGAAAATGGA+AGG + chr5.2:32916349-32916368 None:intergenic 30.0%
TTTCTCTTGTATACATAACC+AGG - chr5.2:32916354-32916373 MS.gene78560:intron 30.0%
! ACCAACTTCTGTTTAAAATG+GGG - chr5.2:32915630-32915649 MS.gene78560:CDS 30.0%
! CTTCCCTTTTTAAATTAGGT+GGG - chr5.2:32915258-32915277 MS.gene78560:intron 30.0%
! TTGGCTTCCCTTTTTAAATT+AGG - chr5.2:32915254-32915273 MS.gene78560:intron 30.0%
!! CCTGACTTGATTTTATATAC+AGG + chr5.2:32917179-32917198 None:intergenic 30.0%
!! GATTTTGTGTATTAGCTTGA+AGG + chr5.2:32916764-32916783 None:intergenic 30.0%
!! TAACTTCTAAGGTTTAACCA+TGG - chr5.2:32914887-32914906 MS.gene78560:CDS 30.0%
!!! CACAGGTTGTTACATTTTTT+AGG - chr5.2:32915182-32915201 MS.gene78560:CDS 30.0%
AAACAAGAGTGGATGAAAGT+AGG - chr5.2:32914978-32914997 MS.gene78560:CDS 35.0%
AGAACAGGGATAGGAAAAAA+AGG - chr5.2:32915749-32915768 MS.gene78560:intron 35.0%
AGTTAGGAGAAATTGATGTG+TGG - chr5.2:32916571-32916590 MS.gene78560:intron 35.0%
ATCTTAGACGGTAACTTCTA+AGG - chr5.2:32914876-32914895 MS.gene78560:CDS 35.0%
ATGATGAATATGGCGTCTAA+AGG - chr5.2:32915578-32915597 MS.gene78560:intron 35.0%
GGTGAGTAAAGATTGGAAAA+TGG - chr5.2:32915497-32915516 MS.gene78560:intron 35.0%
GGTTTGATTGGCAATCTTTA+TGG - chr5.2:32917197-32917216 MS.gene78560:intron 35.0%
GTGTTCCAATATAAGGACAT+AGG + chr5.2:32916988-32917007 None:intergenic 35.0%
GTTGTTGACATATGAATCAG+TGG - chr5.2:32917067-32917086 MS.gene78560:CDS 35.0%
TAAGAATCTCCTTCCAAGAT+TGG - chr5.2:32916435-32916454 MS.gene78560:intron 35.0%
TAGACACTTTCAGTAGAACA+GGG - chr5.2:32915735-32915754 MS.gene78560:intron 35.0%
TAGATCAGTCAAAACCTATC+AGG + chr5.2:32916326-32916345 None:intergenic 35.0%
TATGACCTATTGACCATTCT+AGG - chr5.2:32916106-32916125 MS.gene78560:intron 35.0%
TATGGCTTATCATGATTCAC+AGG - chr5.2:32917025-32917044 MS.gene78560:CDS 35.0%
TGATGAATATGGCGTCTAAA+GGG - chr5.2:32915579-32915598 MS.gene78560:intron 35.0%
TGGCTCTTTGGTTGAATATA+TGG - chr5.2:32915135-32915154 MS.gene78560:intron 35.0%
TGTAACACTGGAAGCTTAAT+AGG + chr5.2:32916526-32916545 None:intergenic 35.0%
TTAGACACTTTCAGTAGAAC+AGG - chr5.2:32915734-32915753 MS.gene78560:intron 35.0%
TTGGCAATCTTTATGGTGAA+TGG - chr5.2:32917204-32917223 MS.gene78560:intron 35.0%
! CAAGTTTGGTGAGTAAAGAT+TGG - chr5.2:32915490-32915509 MS.gene78560:intron 35.0%
! CAGCAACAAATTTTCCATAG+TGG + chr5.2:32916882-32916901 None:intergenic 35.0%
! CATTTTGTTCCTACACCATA+TGG + chr5.2:32916627-32916646 None:intergenic 35.0%
! CCAACTTCTGTTTAAAATGG+GGG - chr5.2:32915631-32915650 MS.gene78560:CDS 35.0%
! GCTTCCCTTTTTAAATTAGG+TGG - chr5.2:32915257-32915276 MS.gene78560:intron 35.0%
! TTCTTCTCAGATGGTTTTCA+TGG - chr5.2:32915115-32915134 MS.gene78560:intron 35.0%
!! ACTTGGTCTTTTGTAGATTG+AGG - chr5.2:32915701-32915720 MS.gene78560:CDS 35.0%
!! CTATGGAAAATTTGTTGCTG+AGG - chr5.2:32916882-32916901 MS.gene78560:intron 35.0%
!! TCTTTTTGGTGCAGACATTT+AGG - chr5.2:32914953-32914972 MS.gene78560:CDS 35.0%
AAAACCTGTGGGTACTTCAT+GGG + chr5.2:32915348-32915367 None:intergenic 40.0%
AACTGAAAAGCTTCATGCAC+AGG - chr5.2:32915165-32915184 MS.gene78560:intron 40.0%
ACTGCATCTGCAATTTATGC+TGG + chr5.2:32916002-32916021 None:intergenic 40.0%
ACTTTCAGTAGAACAGGGAT+AGG - chr5.2:32915740-32915759 MS.gene78560:intron 40.0%
AGAATGCCCTTCTGTATATG+AGG - chr5.2:32916915-32916934 MS.gene78560:intron 40.0%
AGTTGAACGAAGTAGGAACT+AGG + chr5.2:32916239-32916258 None:intergenic 40.0%
ATGATTCACAGGACAGGAAA+CGG - chr5.2:32917036-32917055 MS.gene78560:CDS 40.0%
CAGATATTGATCCAGAAGCT+TGG + chr5.2:32914927-32914946 None:intergenic 40.0%
CCAATTCAGTTGAACGAAGT+AGG + chr5.2:32916246-32916265 None:intergenic 40.0%
CCTACTTCGTTCAACTGAAT+TGG - chr5.2:32916243-32916262 MS.gene78560:intron 40.0%
CTCTCAAAGAGAATCCACTA+TGG - chr5.2:32916865-32916884 MS.gene78560:intron 40.0%
CTTATCATGATTCACAGGAC+AGG - chr5.2:32917030-32917049 MS.gene78560:CDS 40.0%
CTTCCAAGATTGGTAAAAGC+AGG - chr5.2:32916445-32916464 MS.gene78560:intron 40.0%
CTTGACCTAGAATGGTCAAT+AGG + chr5.2:32916114-32916133 None:intergenic 40.0%
GAGAGGCTGATTGTAACATT+TGG - chr5.2:32915542-32915561 MS.gene78560:intron 40.0%
GCAGAAGAGAGTAGAAATGA+AGG - chr5.2:32917100-32917119 MS.gene78560:CDS 40.0%
GCATCAGACACTCTTTGATT+AGG - chr5.2:32915017-32915036 MS.gene78560:CDS 40.0%
GTGGTAAAGATCAATGAAGC+AGG - chr5.2:32917140-32917159 MS.gene78560:CDS 40.0%
GTTGACATATGAATCAGTGG+AGG - chr5.2:32917070-32917089 MS.gene78560:CDS 40.0%
TATAAAGTGGCTACTGCATG+TGG + chr5.2:32916137-32916156 None:intergenic 40.0%
TCAAAATCTCGTTCTCCTAC+TGG - chr5.2:32915801-32915820 MS.gene78560:intron 40.0%
TTGGTAAAAGCAGGAGATGA+TGG - chr5.2:32916454-32916473 MS.gene78560:intron 40.0%
! AACCTTTTGGTGAGAATGAG+AGG - chr5.2:32915525-32915544 MS.gene78560:intron 40.0%
! AGATGGTTTTCATGGCTCTT+TGG - chr5.2:32915123-32915142 MS.gene78560:intron 40.0%
! CATGAAGCTTTTCAGTTTCG+TGG + chr5.2:32915162-32915181 None:intergenic 40.0%
! CCCCCATTTTAAACAGAAGT+TGG + chr5.2:32915634-32915653 None:intergenic 40.0%
!! CTGAAAGTGTCTAATACGAG+AGG + chr5.2:32915728-32915747 None:intergenic 40.0%
!! CTGCTTTTACCAATCTTGGA+AGG + chr5.2:32916447-32916466 None:intergenic 40.0%
!! TCTCCTGCTTTTACCAATCT+TGG + chr5.2:32916451-32916470 None:intergenic 40.0%
AACAGTGAAATCCACCCTAG+AGG - chr5.2:32916599-32916618 MS.gene78560:intron 45.0%
AGCCTCTCATTCTCACCAAA+AGG + chr5.2:32915530-32915549 None:intergenic 45.0%
AGTGGCTCAGGTAAGTTTGT+AGG + chr5.2:32915318-32915337 None:intergenic 45.0%
ATGGCAGCCTCATATACAGA+AGG + chr5.2:32916925-32916944 None:intergenic 45.0%
ATTGAGATCCTCTCCAGTAC+CGG + chr5.2:32915833-32915852 None:intergenic 45.0%
CAAAACCTGTGGGTACTTCA+TGG + chr5.2:32915349-32915368 None:intergenic 45.0%
CAGACACTCTTTGATTAGGC+AGG - chr5.2:32915021-32915040 MS.gene78560:CDS 45.0%
CGAAGTAGGAACTAGGAACT+AGG + chr5.2:32916232-32916251 None:intergenic 45.0%
GGCAAGAACATTCAGTCAAG+TGG - chr5.2:32917121-32917140 MS.gene78560:CDS 45.0%
GTGGCTCAGGTAAGTTTGTA+GGG + chr5.2:32915317-32915336 None:intergenic 45.0%
TACACCATATGGAGCCTCTA+GGG + chr5.2:32916616-32916635 None:intergenic 45.0%
TGGACAACGAACGATTTCCA+TGG + chr5.2:32914907-32914926 None:intergenic 45.0%
TGGCAGCCTCATATACAGAA+GGG + chr5.2:32916924-32916943 None:intergenic 45.0%
! GACAAAGCGTTCTTCTCAGA+TGG - chr5.2:32915106-32915125 MS.gene78560:intron 45.0%
ACCTGCACTTCTTTCGTGAG+AGG + chr5.2:32917236-32917255 None:intergenic 50.0%
CTACACCATATGGAGCCTCT+AGG + chr5.2:32916617-32916636 None:intergenic 50.0%
CTAGAGGCTCCATATGGTGT+AGG - chr5.2:32916615-32916634 MS.gene78560:intron 50.0%
CTGTGACACTCTTTGCTTGC+AGG - chr5.2:32916498-32916517 MS.gene78560:intron 50.0%
GCATGTGGCTTGACCTAGAA+TGG + chr5.2:32916122-32916141 None:intergenic 50.0%
TACTTCATGGGAGGAAGCAG+TGG + chr5.2:32915336-32915355 None:intergenic 50.0%
TCGTTCGTTGTCCAAGCTTC+TGG - chr5.2:32914913-32914932 MS.gene78560:CDS 50.0%
TGGTAACAGTGGATCAGCTG+CGG - chr5.2:32916474-32916493 MS.gene78560:intron 50.0%
! GCAGGAGATGATGGTAACAG+TGG - chr5.2:32916463-32916482 MS.gene78560:intron 50.0%
! GGAAGAAAGCATGCTCATCC+GGG + chr5.2:32915296-32915315 None:intergenic 50.0%
! GGGAAGAAAGCATGCTCATC+CGG + chr5.2:32915297-32915316 None:intergenic 50.0%
!! GTTCTCCTACTGGAAGTGTC+CGG - chr5.2:32915811-32915830 MS.gene78560:intron 50.0%
ACAGGACAGGAAACGGCTAC+TGG - chr5.2:32917043-32917062 MS.gene78560:CDS 55.0%
ACCTGTGGGTACTTCATGGG+AGG + chr5.2:32915345-32915364 None:intergenic 55.0%
GGTGGGAAGATATACGAGCC+CGG - chr5.2:32915275-32915294 MS.gene78560:intron 55.0%
TCCACCCTAGAGGCTCCATA+TGG - chr5.2:32916609-32916628 MS.gene78560:intron 55.0%
TGGCACAGTGATGCAGAACC+TGG + chr5.2:32916375-32916394 None:intergenic 55.0%
! ACCATATGGAGCCTCTAGGG+TGG + chr5.2:32916613-32916632 None:intergenic 55.0%
! CAGTACCGGACACTTCCAGT+AGG + chr5.2:32915819-32915838 None:intergenic 55.0%
! GCCTCTCACGAAAGAAGTGC+AGG - chr5.2:32917232-32917251 MS.gene78560:intron 55.0%
! TCCTCCCATGAAGTACCCAC+AGG - chr5.2:32915341-32915360 MS.gene78560:intron 55.0%
!! CTACTGGAAGTGTCCGGTAC+TGG - chr5.2:32915817-32915836 MS.gene78560:intron 55.0%
ATGGGAGGAAGCAGTGGCTC+AGG + chr5.2:32915330-32915349 None:intergenic 60.0%
!! GGAAGTGTCCGGTACTGGAG+AGG - chr5.2:32915822-32915841 MS.gene78560:intron 60.0%


Chromosome Type Strat End Strand Name
chr5.2 gene 32914844 32917283 32914844 ID=MS.gene78560
chr5.2 mRNA 32914844 32917283 32914844 ID=MS.gene78560.t1;Parent=MS.gene78560
chr5.2 exon 32917267 32917283 32917267 ID=MS.gene78560.t1.exon1;Parent=MS.gene78560.t1
chr5.2 CDS 32917267 32917283 32917267 ID=cds.MS.gene78560.t1;Parent=MS.gene78560.t1
chr5.2 exon 32916941 32917160 32916941 ID=MS.gene78560.t1.exon2;Parent=MS.gene78560.t1
chr5.2 CDS 32916941 32917160 32916941 ID=cds.MS.gene78560.t1;Parent=MS.gene78560.t1
chr5.2 exon 32916765 32916851 32916765 ID=MS.gene78560.t1.exon3;Parent=MS.gene78560.t1
chr5.2 CDS 32916765 32916851 32916765 ID=cds.MS.gene78560.t1;Parent=MS.gene78560.t1
chr5.2 exon 32915608 32915751 32915608 ID=MS.gene78560.t1.exon4;Parent=MS.gene78560.t1
chr5.2 CDS 32915608 32915751 32915608 ID=cds.MS.gene78560.t1;Parent=MS.gene78560.t1
chr5.2 exon 32915173 32915265 32915173 ID=MS.gene78560.t1.exon5;Parent=MS.gene78560.t1
chr5.2 CDS 32915173 32915265 32915173 ID=cds.MS.gene78560.t1;Parent=MS.gene78560.t1
chr5.2 exon 32914844 32915080 32914844 ID=MS.gene78560.t1.exon6;Parent=MS.gene78560.t1
chr5.2 CDS 32914844 32915080 32914844 ID=cds.MS.gene78560.t1;Parent=MS.gene78560.t1
Gene Sequence

>MS.gene78560

ATGCACGCTAGTTTATCGTAATAGTAATATAAATCTTAGACGGTAACTTCTAAGGTTTAACCATGGAAATCGTTCGTTGTCCAAGCTTCTGGATCAATATCTGACAGTTTCTTTTTGGTGCAGACATTTAGGTAAAACAAGAGTGGATGAAAGTAGGAGCTTGACTTTAGACTGCATCAGACACTCTTTGATTAGGCAGGAAGATAGCATAATATTCAATCTTTTGGAGAGAGCTCAATATTCTTATAATGCAGACACATATGACAAAGCGTTCTTCTCAGATGGTTTTCATGGCTCTTTGGTTGAATATATGGTCCACGAAACTGAAAAGCTTCATGCACAGGTTGTTACATTTTTTAGGCAATGAAAATATGGAAAAGAAAAGAATTTCGTGATTAAAATTTGTGTGCTTGGCTTCCCTTTTTAAATTAGGTGGGAAGATATACGAGCCCGGATGAGCATGCTTTCTTCCCTACAAACTTACCTGAGCCACTGCTTCCTCCCATGAAGTACCCACAGGTTTTGAAATTTTATCTTCTTTCTTGTTACGTACGTGAAAATTCATTTGATGTTCAACAAACATTGAATTTCCTTTTTGTAGACTATATTAATTTCATGAAAGTATTTAATATTTCTCTTATTTTGACAAGTTTGGTGAGTAAAGATTGGAAAATGGTTTTTAACCTTTTGGTGAGAATGAGAGGCTGATTGTAACATTTGGCGTGTAATAGTAGATGATGAATATGGCGTCTAAAGGGAAACGATTTTAACTCTTATTTTAAGACTACCAACTTCTGTTTAAAATGGGGGTAATGTATCAGCCCTTCTATTATAATGCTCAAGAGGAATTCAAATTTACTTGGTCTTTTGTAGATTGAGGTCCTCTCGTATTAGACACTTTCAGTAGAACAGGGATAGGAAAAAAAGGAGAGATTAATGTATTGATTTTTTTATCATTCAAAATCTCGTTCTCCTACTGGAAGTGTCCGGTACTGGAGAGGATCTCAATCCGTCTTTTGTATATCACCAGATTATCTTATTGACCTTTTATTACACTAGTCATATGTGCTCAAAACAAAAGAAAATAACATATGCATTTGTACGTCCAAAATTAATTGTAGATCACACATGCAATGTAAGTGATTACATGTTCATCCAGCATAAATTGCAGATGCAGTTTCAGCTGATTTGACCTACTAAGAATTTTATGAGTACTTTCATCGGAAAAATATAGAGAAAATTCACTAGCATGAGTTGCACTCTATGACCTATTGACCATTCTAGGTCAAGCCACATGCAGTAGCCACTTTATAACATGTAATTTCATCCATTATATTATCATTATCTCTTCATTCAGTTCAGCTATTCTCTTATAGTAACACTTTCCTAGTTCCTAGTTCCTACTTCGTTCAACTGAATTGGTTGACTATCATTTCATAAAAAAAGACTAGTTCTTGCTTTTAGTTTTTGCAATATTTTCCTGATAGGTTTTGACTGATCTACCTTCCATTTTCTCTTGTATACATAACCAGGTTCTGCATCACTGTGCCAATTCAATCAATCTAAACAATATGATTTGGAATATGTATTTTAAGAATCTCCTTCCAAGATTGGTAAAAGCAGGAGATGATGGTAACAGTGGATCAGCTGCGGTCTGTGACACTCTTTGCTTGCAGGTACCTATTAAGCTTCCAGTGTTACAGTACATATTTTATCATTTTCAACAAAGTTAGGAGAAATTGATGTGTGGTATATAACAGTGAAATCCACCCTAGAGGCTCCATATGGTGTAGGAACAAAATGATGACCTCATTTCTTTGTCTATATTGAAATTTTGAGTACTAGAAGACAATTATTACCTTTTACTTTGCATGAGATTATCTTAATTAAACAAAATTCAATATTTCTCAATAATCTCCTTCAAGCTAATACACAAAATCGATATATTATTACTGTTATACGGATACTTCATATTATAAACAAATACCGTGTTTTGTTATAAATTATAATCGTTACAGGCTCTCTCAAAGAGAATCCACTATGGAAAATTTGTTGCTGAGGCAAAGTTTCAAGAATGCCCTTCTGTATATGAGGCTGCCATTAAAGCGAAAGTAAGCATTTACTTGCCTTATAATATACTACCTATGTCCTTATATTGGAACACTACAAAATTTATCTTGATATGGCTTATCATGATTCACAGGACAGGAAACGGCTACTGGAGTTGTTGACATATGAATCAGTGGAGGCATCAGTGCAGAAGAGAGTAGAAATGAAGGCAAGAACATTCAGTCAAGTGGTAAAGATCAATGAAGCAGGTGATGTAGCTGATCCTGTATATAAAATCAAGTCAGGTTTGATTGGCAATCTTTATGGTGAATGGATAATGCCTCTCACGAAAGAAGTGCAGGTTGAATACCTGTTGCGAAGACTTGATTAA
Protein sequence

>MS.gene78560.t1

MHASLSHLGKTRVDESRSLTLDCIRHSLIRQEDSIIFNLLERAQYSYNADTYDKAFFSDGFHGSLVEYMVHETEKLHAQVGRYTSPDEHAFFPTNLPEPLLPPMKYPQVLHHCANSINLNNMIWNMYFKNLLPRLVKAGDDGNSGSAAVCDTLCLQALSKRIHYGKFVAEAKFQECPSVYEAAIKAKDRKRLLELLTYESVEASVQKRVEMKARTFSQVVKINEAGDVADPVYKIKSGLIGNLYGEWIMPLTKEVQVEYLLRRLD