Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79535.t1 | XP_013454734.1 | 97.9 | 900 | 19 | 0 | 1 | 900 | 1 | 900 | 0.00E+00 | 1696.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79535.t1 | Q8VZM1 | 76.4 | 878 | 203 | 4 | 1 | 877 | 1 | 875 | 0.0e+00 | 1275.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79535.t1 | A0A072USB6 | 97.9 | 900 | 19 | 0 | 1 | 900 | 1 | 900 | 0.0e+00 | 1696.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene79535 | 0.819458 | 1.15E-52 | -1.69E-46 |
| MS.gene051744 | MS.gene79535 | 0.836424 | 9.43E-57 | -1.69E-46 |
| MS.gene052584 | MS.gene79535 | 0.802824 | 4.67E-49 | -1.69E-46 |
| MS.gene052609 | MS.gene79535 | 0.83317 | 6.22E-56 | -1.69E-46 |
| MS.gene052775 | MS.gene79535 | 0.830852 | 2.32E-55 | -1.69E-46 |
| MS.gene052776 | MS.gene79535 | 0.802273 | 6.07E-49 | -1.69E-46 |
| MS.gene053079 | MS.gene79535 | 0.805326 | 1.41E-49 | -1.69E-46 |
| MS.gene053122 | MS.gene79535 | 0.830529 | 2.79E-55 | -1.69E-46 |
| MS.gene053226 | MS.gene79535 | 0.859552 | 3.82E-63 | -1.69E-46 |
| MS.gene053542 | MS.gene79535 | 0.808928 | 2.43E-50 | -1.69E-46 |
| MS.gene054576 | MS.gene79535 | 0.809733 | 1.64E-50 | -1.69E-46 |
| MS.gene054651 | MS.gene79535 | 0.806098 | 9.70E-50 | -1.69E-46 |
| MS.gene055513 | MS.gene79535 | 0.802879 | 4.55E-49 | -1.69E-46 |
| MS.gene055694 | MS.gene79535 | 0.804073 | 2.57E-49 | -1.69E-46 |
| MS.gene056050 | MS.gene79535 | 0.857305 | 1.79E-62 | -1.69E-46 |
| MS.gene056173 | MS.gene79535 | 0.800362 | 1.49E-48 | -1.69E-46 |
| MS.gene056308 | MS.gene79535 | 0.822531 | 2.25E-53 | -1.69E-46 |
| MS.gene056507 | MS.gene79535 | 0.838398 | 2.95E-57 | -1.69E-46 |
| MS.gene05686 | MS.gene79535 | 0.817447 | 3.28E-52 | -1.69E-46 |
| MS.gene057598 | MS.gene79535 | 0.807057 | 6.09E-50 | -1.69E-46 |
| MS.gene057855 | MS.gene79535 | 0.80484 | 1.78E-49 | -1.69E-46 |
| MS.gene057915 | MS.gene79535 | 0.814492 | 1.50E-51 | -1.69E-46 |
| MS.gene058919 | MS.gene79535 | 0.801283 | 9.69E-49 | -1.69E-46 |
| MS.gene05978 | MS.gene79535 | 0.815864 | 7.43E-52 | -1.69E-46 |
| MS.gene060355 | MS.gene79535 | 0.844686 | 6.48E-59 | -1.69E-46 |
| MS.gene060933 | MS.gene79535 | 0.806756 | 7.05E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79535.t1 | MTR_4g011890 | 98.111 | 900 | 17 | 0 | 1 | 900 | 1 | 900 | 0.0 | 1827 |
| MS.gene79535.t1 | MTR_2g102435 | 81.167 | 908 | 162 | 2 | 1 | 899 | 1 | 908 | 0.0 | 1451 |
| MS.gene79535.t1 | MTR_2g102435 | 82.759 | 841 | 138 | 1 | 1 | 834 | 1 | 841 | 0.0 | 1366 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79535.t1 | AT1G80410 | 74.197 | 903 | 223 | 6 | 1 | 900 | 1 | 896 | 0.0 | 1327 |
| MS.gene79535.t1 | AT1G80410 | 75.682 | 880 | 210 | 4 | 1 | 879 | 1 | 877 | 0.0 | 1325 |
Find 166 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCGGAAATCTTGTACATTT+TGG | 0.148812 | 4.2:+88414389 | MS.gene79535:CDS |
| CCATGAACCCTGATAATTAT+AGG | 0.179496 | 4.2:+88406475 | MS.gene79535:CDS |
| AGTTTCTCGCTTTCAGTTAC+AGG | 0.198845 | 4.2:-88414057 | None:intergenic |
| TCTTCTTTGTACAATCATTC+TGG | 0.211391 | 4.2:+88409511 | MS.gene79535:CDS |
| ATTTATTACCTATAATTATC+AGG | 0.212894 | 4.2:-88406483 | None:intergenic |
| TGAAACAAAGCAATATAAAA+AGG | 0.223930 | 4.2:+88400976 | MS.gene79535:CDS |
| ATCCAAGGCTGTGGAAATTT+TGG | 0.230234 | 4.2:+88405292 | MS.gene79535:CDS |
| CCCTCAAAGTAAGTTGAATA+AGG | 0.241878 | 4.2:-88416525 | None:intergenic |
| CTTTGTCTAGGCAGACATTT+TGG | 0.256838 | 4.2:+88409688 | MS.gene79535:intron |
| ATTGCAGTTCACAAGCTTCT+TGG | 0.266120 | 4.2:+88416124 | MS.gene79535:CDS |
| AATACAATCCAACACACTTT+TGG | 0.274805 | 4.2:-88407095 | None:intergenic |
| CTTCCTCTGTTGTAGACTTC+GGG | 0.282116 | 4.2:-88412246 | None:intergenic |
| TGCACAGATCTCTTTGTTAG+AGG | 0.284524 | 4.2:+88406217 | MS.gene79535:intron |
| AAGCCGAGCGCTCAACTATT+AGG | 0.286213 | 4.2:+88414097 | MS.gene79535:CDS |
| TGCTCCAACCGTTCACTATC+TGG | 0.286513 | 4.2:-88405350 | None:intergenic |
| CCTATAATTATCAGGGTTCA+TGG | 0.300614 | 4.2:-88406475 | None:intergenic |
| TGCAGATGAAGCAAGGCTTA+TGG | 0.303369 | 4.2:+88411208 | MS.gene79535:CDS |
| TTGAAGAGATTGGCCTCTTT+AGG | 0.305988 | 4.2:-88399937 | None:intergenic |
| CTTTGCTATCAAGGTGGATT+TGG | 0.311554 | 4.2:+88411392 | MS.gene79535:intron |
| GCGTGACTTATCACTCTTAC+AGG | 0.312505 | 4.2:+88402093 | MS.gene79535:CDS |
| TCTAGTGTGGCATCGAAGTC+TGG | 0.323999 | 4.2:+88412469 | MS.gene79535:CDS |
| AACAATAAGCTTGAAGAGAT+TGG | 0.334194 | 4.2:-88399947 | None:intergenic |
| ACCAAGCAACGATGAGAATC+AGG | 0.337600 | 4.2:-88413624 | None:intergenic |
| GCGCATGCTGCAGGCTGATC+AGG | 0.339377 | 4.2:+88411268 | MS.gene79535:CDS |
| AAGCAGCAGAAAATTATATT+AGG | 0.353155 | 4.2:+88409366 | MS.gene79535:CDS |
| CGAACAAGTTCATATGCTTC+AGG | 0.357741 | 4.2:-88401664 | None:intergenic |
| TCAGGATCAACAGGCTTTAC+AGG | 0.361983 | 4.2:-88412499 | None:intergenic |
| AAGCAGCAGCAGGAGCTATA+AGG | 0.369614 | 4.2:+88411784 | MS.gene79535:CDS |
| CCCTTATTCAACTTACTTTG+AGG | 0.370290 | 4.2:+88416524 | MS.gene79535:CDS |
| GAAGAATTCACCCGATTCAT+TGG | 0.371821 | 4.2:+88413343 | MS.gene79535:CDS |
| TATTGATCTATATTCTTTCA+AGG | 0.373909 | 4.2:+88410222 | MS.gene79535:CDS |
| ACCTTAAAAGTCATGTTTGC+TGG | 0.375515 | 4.2:+88401969 | MS.gene79535:CDS |
| ATTCTCTGTCTGACCGATAA+AGG | 0.377191 | 4.2:-88402006 | None:intergenic |
| TGTAGAAACTTTATCAATGA+AGG | 0.378683 | 4.2:+88401612 | MS.gene79535:intron |
| TAGAAAGAGAAGTCTCATAT+TGG | 0.381306 | 4.2:-88410165 | None:intergenic |
| GGATTTCTTGAGAGAGCTCT+TGG | 0.382910 | 4.2:+88406245 | MS.gene79535:CDS |
| TGCTGCTGCTTTATGAAAAT+AGG | 0.383335 | 4.2:-88411772 | None:intergenic |
| GCTCAAATGAGAGATTTATC+TGG | 0.384702 | 4.2:+88404385 | MS.gene79535:CDS |
| GCTTTCCATGACAATCATAA+AGG | 0.386503 | 4.2:+88414251 | MS.gene79535:CDS |
| GATCTATTCTCAGTGCATTT+CGG | 0.393326 | 4.2:-88402051 | None:intergenic |
| ATCCAGTTCATGCGATGGTT+TGG | 0.398255 | 4.2:-88404445 | None:intergenic |
| ACTTGGGGAGAAGTTATTAC+AGG | 0.405789 | 4.2:+88412525 | MS.gene79535:CDS |
| AGCCAAACCATCGCATGAAC+TGG | 0.411550 | 4.2:+88404443 | MS.gene79535:CDS |
| TGATTATCAACTGAATGGTT+AGG | 0.412636 | 4.2:-88416615 | None:intergenic |
| TCTTCCTCTGTTGTAGACTT+CGG | 0.415096 | 4.2:-88412247 | None:intergenic |
| AACTGACTAAAGGCCGAGTT+GGG | 0.418480 | 4.2:-88416567 | None:intergenic |
| AACTTCTCCCCAAGTGGATC+AGG | 0.418869 | 4.2:-88412517 | None:intergenic |
| TCGTCTAGAAATGGAGCAAT+TGG | 0.419041 | 4.2:+88416070 | MS.gene79535:intron |
| CAAATGTGTTTCCAATGAAT+CGG | 0.422505 | 4.2:-88413354 | None:intergenic |
| CCCTGATTCTCATCGTTGCT+TGG | 0.426967 | 4.2:+88413623 | MS.gene79535:CDS |
| CCAAGTGGATCAGGATCAAC+AGG | 0.427504 | 4.2:-88412508 | None:intergenic |
| TGCTGTATTGTTCACAAAAG+AGG | 0.429445 | 4.2:+88411425 | MS.gene79535:CDS |
| CCGCCAGGGCAATCTTGGGC+GGG | 0.430054 | 4.2:+88411605 | MS.gene79535:CDS |
| CTTCTTTGTACAATCATTCT+GGG | 0.430078 | 4.2:+88409512 | MS.gene79535:CDS |
| AGTATGAATGAAAATCAAAT+TGG | 0.433591 | 4.2:-88411680 | None:intergenic |
| CCTCAAAGTAAGTTGAATAA+GGG | 0.433741 | 4.2:-88416524 | None:intergenic |
| CTTCAAGTATTTAACAGCTT+CGG | 0.435564 | 4.2:-88413312 | None:intergenic |
| CTGAAAGCGAGAAACTGATA+TGG | 0.441420 | 4.2:+88414064 | MS.gene79535:CDS |
| AAATGTATACCTCCATGATC+TGG | 0.441908 | 4.2:-88401034 | None:intergenic |
| TGCTCATGGAACCCAATTGA+TGG | 0.444158 | 4.2:-88414032 | None:intergenic |
| CCTTATTCAACTTACTTTGA+GGG | 0.450035 | 4.2:+88416525 | MS.gene79535:CDS |
| TATTAGGCCTCTCTTAACTA+AGG | 0.452306 | 4.2:+88409382 | MS.gene79535:CDS |
| TTCCAAAATTTCCACAGCCT+TGG | 0.452318 | 4.2:-88405294 | None:intergenic |
| AATGGAGCAATTGGACCAAT+CGG | 0.452826 | 4.2:+88416079 | MS.gene79535:CDS |
| CTGCATTTGCAGATGAAGCA+AGG | 0.463262 | 4.2:+88411201 | MS.gene79535:CDS |
| AATAGGCATGTGAGTGCAAT+TGG | 0.469602 | 4.2:-88411755 | None:intergenic |
| GTTCTTTCGTAACTGACTAA+AGG | 0.470549 | 4.2:-88416577 | None:intergenic |
| ATGGAGCAATTGGACCAATC+GGG | 0.471704 | 4.2:+88416080 | MS.gene79535:CDS |
| GGGTTTAACATTAAATTGCA+TGG | 0.472520 | 4.2:+88401633 | MS.gene79535:CDS |
| TCAAGTTTCCATTCCCCGAT+TGG | 0.475845 | 4.2:-88416094 | None:intergenic |
| TCCGCCAGGGCAATCTTGGG+CGG | 0.475971 | 4.2:+88411604 | MS.gene79535:CDS |
| ATCGGTCAGACAGAGAATAC+AGG | 0.479744 | 4.2:+88402011 | MS.gene79535:CDS |
| CACATTCACTATTAACATAA+CGG | 0.486325 | 4.2:-88411241 | None:intergenic |
| TAAGTGGTCTTCTGCAGTAA+AGG | 0.488305 | 4.2:+88407191 | MS.gene79535:CDS |
| GTTGGATTGTATTTAGAAGA+TGG | 0.489708 | 4.2:+88407105 | MS.gene79535:CDS |
| TTCAGTTACAGGAGTGCTCA+TGG | 0.491608 | 4.2:-88414046 | None:intergenic |
| AAAGTCCACAAAAGAGTTGA+AGG | 0.492499 | 4.2:-88410038 | None:intergenic |
| AACCATCGCATGAACTGGAT+TGG | 0.493792 | 4.2:+88404448 | MS.gene79535:CDS |
| TGTTTGCCAGAGAATACCCC+TGG | 0.493889 | 4.2:+88409316 | MS.gene79535:intron |
| AAGAAGCAGAAACGTTATAC+AGG | 0.494572 | 4.2:+88406442 | MS.gene79535:CDS |
| GCAAGGTATGAGCTGGCCTC+AGG | 0.497598 | 4.2:+88411570 | MS.gene79535:intron |
| GCTGTATTGTTCACAAAAGA+GGG | 0.499907 | 4.2:+88411426 | MS.gene79535:CDS |
| GAACCTAATAGTTGAGCGCT+CGG | 0.502984 | 4.2:-88414100 | None:intergenic |
| GTTTCACTTGTAGTGAAGCT+TGG | 0.503623 | 4.2:+88406411 | MS.gene79535:CDS |
| GATAACCTTTATGATTGTCA+TGG | 0.505429 | 4.2:-88414256 | None:intergenic |
| CCTGTTGATCCTGATCCACT+TGG | 0.507893 | 4.2:+88412508 | MS.gene79535:CDS |
| TTCAGTTGATAATCAAAATG+TGG | 0.511760 | 4.2:+88416623 | MS.gene79535:CDS |
| CATACTTAGAGTTTAAATGA+TGG | 0.512812 | 4.2:-88404483 | None:intergenic |
| ATAGTGAACGGTTGGAGCAT+GGG | 0.513342 | 4.2:+88405354 | MS.gene79535:CDS |
| GATAGTGAACGGTTGGAGCA+TGG | 0.514201 | 4.2:+88405353 | MS.gene79535:CDS |
| ATGTGTTAAGCGCATGCTGC+AGG | 0.516507 | 4.2:+88411259 | MS.gene79535:CDS |
| GTTTCGTTGTATGAAACACT+TGG | 0.516607 | 4.2:+88407159 | MS.gene79535:CDS |
| TCCTCCAGATAGTGAACGGT+TGG | 0.517561 | 4.2:+88405346 | MS.gene79535:CDS |
| AAATGTGTTTCCAATGAATC+GGG | 0.519249 | 4.2:-88413353 | None:intergenic |
| ACTTACTCAATGCCGCATCT+TGG | 0.521571 | 4.2:-88416162 | None:intergenic |
| ATACTTAGAGTTTAAATGAT+GGG | 0.522923 | 4.2:-88404482 | None:intergenic |
| TTGGATTGTATTTAGAAGAT+GGG | 0.522961 | 4.2:+88407106 | MS.gene79535:CDS |
| TTTATTACCTATAATTATCA+GGG | 0.529331 | 4.2:-88406482 | None:intergenic |
| TAACTGACTAAAGGCCGAGT+TGG | 0.529519 | 4.2:-88416568 | None:intergenic |
| TGCTTCACTGCCTCCTAAAG+AGG | 0.530422 | 4.2:+88399924 | MS.gene79535:CDS |
| CTGTTGATCCTGATCCACTT+GGG | 0.530625 | 4.2:+88412509 | MS.gene79535:CDS |
| TGTAAAGCAGTTACTGAGGT+TGG | 0.532998 | 4.2:+88413590 | MS.gene79535:CDS |
| ATCTCTTTGTTAGAGGAATG+TGG | 0.534201 | 4.2:+88406224 | MS.gene79535:CDS |
| GTGGGCTCTACCACATCGAA+TGG | 0.535193 | 4.2:+88416642 | MS.gene79535:CDS |
| AAGACGTCAAGCCAATATCC+TGG | 0.535938 | 4.2:+88409743 | MS.gene79535:CDS |
| TATTTAACAGCTTCGGACAA+TGG | 0.540220 | 4.2:-88413305 | None:intergenic |
| GTAGAAACTTTATCAATGAA+GGG | 0.546677 | 4.2:+88401613 | MS.gene79535:intron |
| CAGCTCTGCCTCTCCCAACT+CGG | 0.550523 | 4.2:+88416554 | MS.gene79535:CDS |
| CTAGTGTGGCATCGAAGTCT+GGG | 0.550990 | 4.2:+88412470 | MS.gene79535:CDS |
| TTTGTACAATCATTCTGGGA+AGG | 0.551029 | 4.2:+88409516 | MS.gene79535:CDS |
| TTACCAATCAGTTACTATGA+AGG | 0.552154 | 4.2:+88407069 | MS.gene79535:intron |
| CCCGCCCAAGATTGCCCTGG+CGG | 0.556745 | 4.2:-88411605 | None:intergenic |
| CAATTGGACCAATCGGGGAA+TGG | 0.557393 | 4.2:+88416086 | MS.gene79535:CDS |
| GAAGGTCTCCAAAAGTGTGT+TGG | 0.559719 | 4.2:+88407087 | MS.gene79535:CDS |
| GAATATAGATCAATAACAGC+AGG | 0.560700 | 4.2:-88410214 | None:intergenic |
| TGGGCTCTACCACATCGAAT+GGG | 0.560936 | 4.2:+88416643 | MS.gene79535:CDS |
| ACTTGTTCGTCAAGGATTGA+AGG | 0.563496 | 4.2:+88401678 | MS.gene79535:CDS |
| TTGTATACCTTAGTTAAGAG+AGG | 0.566996 | 4.2:-88409389 | None:intergenic |
| AACCAATCCAGTTCATGCGA+TGG | 0.567359 | 4.2:-88404450 | None:intergenic |
| TTCCTCTGTTGTAGACTTCG+GGG | 0.572186 | 4.2:-88412245 | None:intergenic |
| TGTAATAACTTCTCCCCAAG+TGG | 0.572730 | 4.2:-88412523 | None:intergenic |
| AAGAGATTGGCCTCTTTAGG+AGG | 0.575397 | 4.2:-88399934 | None:intergenic |
| GAAAGATCCGAAAACAGAGA+TGG | 0.575498 | 4.2:-88409490 | None:intergenic |
| TGTACTTGCAAGGTATGAGC+TGG | 0.575773 | 4.2:+88411563 | MS.gene79535:intron |
| TCAGTTGATAATCAAAATGT+GGG | 0.576091 | 4.2:+88416624 | MS.gene79535:CDS |
| ATTGCGACAAAAGCAAAGAA+AGG | 0.577955 | 4.2:+88412309 | MS.gene79535:CDS |
| GCATATGAACTTGTTCGTCA+AGG | 0.579316 | 4.2:+88401670 | MS.gene79535:CDS |
| GGATTCTAATAGAAAGTCTG+AGG | 0.584814 | 4.2:+88414410 | MS.gene79535:CDS |
| ACTAAAGGCCGAGTTGGGAG+AGG | 0.587034 | 4.2:-88416562 | None:intergenic |
| GAGCCCGCCCAAGATTGCCC+TGG | 0.587641 | 4.2:-88411608 | None:intergenic |
| TAGTGAACGGTTGGAGCATG+GGG | 0.588647 | 4.2:+88405355 | MS.gene79535:CDS |
| ATTCAACTTACTTTGAGGGA+AGG | 0.590106 | 4.2:+88416529 | MS.gene79535:CDS |
| AGACGTCAAGCCAATATCCT+GGG | 0.590848 | 4.2:+88409744 | MS.gene79535:CDS |
| CACTTGGGCAGCAATATAAG+TGG | 0.595646 | 4.2:+88407175 | MS.gene79535:CDS |
| AAGTCCACAAAAGAGTTGAA+GGG | 0.600837 | 4.2:-88410037 | None:intergenic |
| ACATGCATTGCATATCATGA+AGG | 0.601554 | 4.2:-88411464 | None:intergenic |
| TAACAGTGCATCCAAGGCTG+TGG | 0.602812 | 4.2:+88405283 | MS.gene79535:intron |
| TCCTCTGTTGTAGACTTCGG+GGG | 0.608275 | 4.2:-88412244 | None:intergenic |
| ATCATCCTCCAGATAGTGAA+CGG | 0.611227 | 4.2:+88405342 | MS.gene79535:CDS |
| CGAAGAGTTAAATTCTAGTG+TGG | 0.611472 | 4.2:+88412456 | MS.gene79535:CDS |
| TTTCGTTGTATGAAACACTT+GGG | 0.614312 | 4.2:+88407160 | MS.gene79535:CDS |
| TGGAGCAATTGGACCAATCG+GGG | 0.617287 | 4.2:+88416081 | MS.gene79535:CDS |
| AGTCCACAAAAGAGTTGAAG+GGG | 0.617982 | 4.2:-88410036 | None:intergenic |
| CCAAGCAACGATGAGAATCA+GGG | 0.620040 | 4.2:-88413623 | None:intergenic |
| TGTTGATCCTGATCCACTTG+GGG | 0.622870 | 4.2:+88412510 | MS.gene79535:CDS |
| AGTCGGTTACTGAAGCATGC+GGG | 0.630243 | 4.2:+88411161 | MS.gene79535:CDS |
| AATGTGTAACAGTGCATCCA+AGG | 0.631402 | 4.2:+88405277 | MS.gene79535:intron |
| TCATGAATGTATTTATGAGA+TGG | 0.640350 | 4.2:-88416685 | None:intergenic |
| CTGGCCTCTACGTACCTGAA+AGG | 0.644814 | 4.2:-88413420 | None:intergenic |
| GAGTCGGTTACTGAAGCATG+CGG | 0.647183 | 4.2:+88411160 | MS.gene79535:intron |
| GAATGTTCTCCCATTCGATG+TGG | 0.652509 | 4.2:-88416652 | None:intergenic |
| CAGTAAATAATATTGTGCCA+AGG | 0.653453 | 4.2:+88414454 | MS.gene79535:CDS |
| CTGTATTGTTCACAAAAGAG+GGG | 0.659001 | 4.2:+88411427 | MS.gene79535:CDS |
| TCGGTCAGACAGAGAATACA+GGG | 0.659217 | 4.2:+88402012 | MS.gene79535:CDS |
| TGTATTGTTCACAAAAGAGG+GGG | 0.659746 | 4.2:+88411428 | MS.gene79535:CDS |
| TCCAACCGTTCACTATCTGG+AGG | 0.661507 | 4.2:-88405347 | None:intergenic |
| AAATAGCATCAGCCGCCTTG+AGG | 0.671327 | 4.2:-88401000 | None:intergenic |
| TTCTCTTTCTAAAATCGACG+AGG | 0.687102 | 4.2:+88410177 | MS.gene79535:CDS |
| AGGCTGTAAAGCAGTTACTG+AGG | 0.698287 | 4.2:+88413586 | MS.gene79535:intron |
| GCATTATGCTGATATTACTG+AGG | 0.708511 | 4.2:+88411656 | MS.gene79535:CDS |
| GTGCAGCATTATGACAGACG+TGG | 0.713334 | 4.2:+88410142 | MS.gene79535:intron |
| AGTACTTGTTGACCAAGATG+CGG | 0.715178 | 4.2:+88416150 | MS.gene79535:CDS |
| CGTCAAGCCAATATCCTGGG+AGG | 0.718713 | 4.2:+88409747 | MS.gene79535:CDS |
| TTCATGATATGCAATGCATG+TGG | 0.734917 | 4.2:+88411466 | MS.gene79535:CDS |
| AGCAACGATGAGAATCAGGG+TGG | 0.778782 | 4.2:-88413620 | None:intergenic |
| GTCAGACAGAGAATACAGGG+AGG | 0.800412 | 4.2:+88402015 | MS.gene79535:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 88399919 | 88416695 | 88399919 | ID=MS.gene79535 |
| chr4.2 | mRNA | 88399919 | 88416695 | 88399919 | ID=MS.gene79535.t1;Parent=MS.gene79535 |
| chr4.2 | exon | 88399919 | 88399969 | 88399919 | ID=MS.gene79535.t1.exon1;Parent=MS.gene79535.t1 |
| chr4.2 | CDS | 88399919 | 88399969 | 88399919 | ID=cds.MS.gene79535.t1;Parent=MS.gene79535.t1 |
| chr4.2 | exon | 88400968 | 88401046 | 88400968 | ID=MS.gene79535.t1.exon2;Parent=MS.gene79535.t1 |
| chr4.2 | CDS | 88400968 | 88401046 | 88400968 | ID=cds.MS.gene79535.t1;Parent=MS.gene79535.t1 |
| chr4.2 | exon | 88401617 | 88401699 | 88401617 | ID=MS.gene79535.t1.exon3;Parent=MS.gene79535.t1 |
| chr4.2 | CDS | 88401617 | 88401699 | 88401617 | ID=cds.MS.gene79535.t1;Parent=MS.gene79535.t1 |
| chr4.2 | exon | 88401965 | 88402114 | 88401965 | ID=MS.gene79535.t1.exon4;Parent=MS.gene79535.t1 |
| chr4.2 | CDS | 88401965 | 88402114 | 88401965 | ID=cds.MS.gene79535.t1;Parent=MS.gene79535.t1 |
| chr4.2 | exon | 88404385 | 88404500 | 88404385 | ID=MS.gene79535.t1.exon5;Parent=MS.gene79535.t1 |
| chr4.2 | CDS | 88404385 | 88404500 | 88404385 | ID=cds.MS.gene79535.t1;Parent=MS.gene79535.t1 |
| chr4.2 | exon | 88405289 | 88405394 | 88405289 | ID=MS.gene79535.t1.exon6;Parent=MS.gene79535.t1 |
| chr4.2 | CDS | 88405289 | 88405394 | 88405289 | ID=cds.MS.gene79535.t1;Parent=MS.gene79535.t1 |
| chr4.2 | exon | 88406224 | 88406295 | 88406224 | ID=MS.gene79535.t1.exon7;Parent=MS.gene79535.t1 |
| chr4.2 | CDS | 88406224 | 88406295 | 88406224 | ID=cds.MS.gene79535.t1;Parent=MS.gene79535.t1 |
| chr4.2 | exon | 88406381 | 88406496 | 88406381 | ID=MS.gene79535.t1.exon8;Parent=MS.gene79535.t1 |
| chr4.2 | CDS | 88406381 | 88406496 | 88406381 | ID=cds.MS.gene79535.t1;Parent=MS.gene79535.t1 |
| chr4.2 | exon | 88407080 | 88407212 | 88407080 | ID=MS.gene79535.t1.exon9;Parent=MS.gene79535.t1 |
| chr4.2 | CDS | 88407080 | 88407212 | 88407080 | ID=cds.MS.gene79535.t1;Parent=MS.gene79535.t1 |
| chr4.2 | exon | 88409326 | 88409403 | 88409326 | ID=MS.gene79535.t1.exon10;Parent=MS.gene79535.t1 |
| chr4.2 | CDS | 88409326 | 88409403 | 88409326 | ID=cds.MS.gene79535.t1;Parent=MS.gene79535.t1 |
| chr4.2 | exon | 88409484 | 88409537 | 88409484 | ID=MS.gene79535.t1.exon11;Parent=MS.gene79535.t1 |
| chr4.2 | CDS | 88409484 | 88409537 | 88409484 | ID=cds.MS.gene79535.t1;Parent=MS.gene79535.t1 |
| chr4.2 | exon | 88409698 | 88409768 | 88409698 | ID=MS.gene79535.t1.exon12;Parent=MS.gene79535.t1 |
| chr4.2 | CDS | 88409698 | 88409768 | 88409698 | ID=cds.MS.gene79535.t1;Parent=MS.gene79535.t1 |
| chr4.2 | exon | 88410022 | 88410076 | 88410022 | ID=MS.gene79535.t1.exon13;Parent=MS.gene79535.t1 |
| chr4.2 | CDS | 88410022 | 88410076 | 88410022 | ID=cds.MS.gene79535.t1;Parent=MS.gene79535.t1 |
| chr4.2 | exon | 88410148 | 88410243 | 88410148 | ID=MS.gene79535.t1.exon14;Parent=MS.gene79535.t1 |
| chr4.2 | CDS | 88410148 | 88410243 | 88410148 | ID=cds.MS.gene79535.t1;Parent=MS.gene79535.t1 |
| chr4.2 | exon | 88411161 | 88411289 | 88411161 | ID=MS.gene79535.t1.exon15;Parent=MS.gene79535.t1 |
| chr4.2 | CDS | 88411161 | 88411289 | 88411161 | ID=cds.MS.gene79535.t1;Parent=MS.gene79535.t1 |
| chr4.2 | exon | 88411405 | 88411487 | 88411405 | ID=MS.gene79535.t1.exon16;Parent=MS.gene79535.t1 |
| chr4.2 | CDS | 88411405 | 88411487 | 88411405 | ID=cds.MS.gene79535.t1;Parent=MS.gene79535.t1 |
| chr4.2 | exon | 88411575 | 88411805 | 88411575 | ID=MS.gene79535.t1.exon17;Parent=MS.gene79535.t1 |
| chr4.2 | CDS | 88411575 | 88411805 | 88411575 | ID=cds.MS.gene79535.t1;Parent=MS.gene79535.t1 |
| chr4.2 | exon | 88412219 | 88412351 | 88412219 | ID=MS.gene79535.t1.exon18;Parent=MS.gene79535.t1 |
| chr4.2 | CDS | 88412219 | 88412351 | 88412219 | ID=cds.MS.gene79535.t1;Parent=MS.gene79535.t1 |
| chr4.2 | exon | 88412439 | 88412546 | 88412439 | ID=MS.gene79535.t1.exon19;Parent=MS.gene79535.t1 |
| chr4.2 | CDS | 88412439 | 88412546 | 88412439 | ID=cds.MS.gene79535.t1;Parent=MS.gene79535.t1 |
| chr4.2 | exon | 88413296 | 88413427 | 88413296 | ID=MS.gene79535.t1.exon20;Parent=MS.gene79535.t1 |
| chr4.2 | CDS | 88413296 | 88413427 | 88413296 | ID=cds.MS.gene79535.t1;Parent=MS.gene79535.t1 |
| chr4.2 | exon | 88413588 | 88413644 | 88413588 | ID=MS.gene79535.t1.exon21;Parent=MS.gene79535.t1 |
| chr4.2 | CDS | 88413588 | 88413644 | 88413588 | ID=cds.MS.gene79535.t1;Parent=MS.gene79535.t1 |
| chr4.2 | exon | 88414021 | 88414118 | 88414021 | ID=MS.gene79535.t1.exon22;Parent=MS.gene79535.t1 |
| chr4.2 | CDS | 88414021 | 88414118 | 88414021 | ID=cds.MS.gene79535.t1;Parent=MS.gene79535.t1 |
| chr4.2 | exon | 88414214 | 88414272 | 88414214 | ID=MS.gene79535.t1.exon23;Parent=MS.gene79535.t1 |
| chr4.2 | CDS | 88414214 | 88414272 | 88414214 | ID=cds.MS.gene79535.t1;Parent=MS.gene79535.t1 |
| chr4.2 | exon | 88414364 | 88414475 | 88414364 | ID=MS.gene79535.t1.exon24;Parent=MS.gene79535.t1 |
| chr4.2 | CDS | 88414364 | 88414475 | 88414364 | ID=cds.MS.gene79535.t1;Parent=MS.gene79535.t1 |
| chr4.2 | exon | 88416078 | 88416178 | 88416078 | ID=MS.gene79535.t1.exon25;Parent=MS.gene79535.t1 |
| chr4.2 | CDS | 88416078 | 88416178 | 88416078 | ID=cds.MS.gene79535.t1;Parent=MS.gene79535.t1 |
| chr4.2 | exon | 88416496 | 88416695 | 88416496 | ID=MS.gene79535.t1.exon26;Parent=MS.gene79535.t1 |
| chr4.2 | CDS | 88416496 | 88416695 | 88416496 | ID=cds.MS.gene79535.t1;Parent=MS.gene79535.t1 |
| Gene Sequence |
| Protein sequence |
