AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene79792


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene79792.t1 MTR_6g069830 95.775 142 4 1 1 142 45 184 2.19e-95 273
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene79792.t1 AT3G17950 43.931 173 65 9 1 142 1 172 1.59e-28 103
MS.gene79792.t1 AT3G17950 43.931 173 65 9 1 142 27 198 2.11e-28 103
MS.gene79792.t1 AT3G17950 43.931 173 65 9 1 142 40 211 3.54e-28 103

Find 67 sgRNAs with CRISPR-Local

Find 87 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCTTGGGTGCAATTCTAT+TGG 0.233385 6.2:-72844031 None:intergenic
CGGCGGTGAGTCTTTGTAAT+AGG 0.276694 6.2:+72844316 MS.gene79792:CDS
GAGTCTTTGTAATAGGTTTC+CGG 0.280633 6.2:+72844323 MS.gene79792:CDS
GGGTATGGTGGTTGGTCATC+AGG 0.347453 6.2:+72844215 MS.gene79792:CDS
CGGCGGAACGGCGGAGAAGG+TGG 0.359258 6.2:+72844082 MS.gene79792:CDS
TGTGGGTCCCGGTGCTGTGA+TGG 0.376288 6.2:-72843991 None:intergenic
GAAGGTGGTGGCAGCTATGC+AGG 0.385670 6.2:+72844097 MS.gene79792:CDS
TGATGCAAGACCGGCGTCGC+TGG 0.385741 6.2:+72844125 MS.gene79792:CDS
GATCCACCGGCGCCGGAATG+TGG 0.393335 6.2:-72844009 None:intergenic
CAGCACCGGGACCCACATTC+CGG 0.401909 6.2:+72843997 MS.gene79792:CDS
AGAAAACCCGCCGCCGTGGC+GGG 0.413565 6.2:+72844057 MS.gene79792:CDS
AAAACCCGCCGCCGTGGCGG+GGG 0.427001 6.2:+72844059 MS.gene79792:CDS
CTTCCGCCGGTGGGAGATGT+TGG 0.430714 6.2:+72844279 MS.gene79792:CDS
TTGGAGGTGGAACGGCGGTT+TGG 0.431305 6.2:+72844156 MS.gene79792:CDS
GGGCGGCGGAACGGCGGAGA+AGG 0.433783 6.2:+72844079 MS.gene79792:CDS
TGATGGGAGGGTTCTTCCGC+CGG 0.447513 6.2:+72844266 MS.gene79792:CDS
TGTAGCGGTGGTGCTGGGTA+GGG 0.452432 6.2:+72844363 MS.gene79792:CDS
GAAAACCCGCCGCCGTGGCG+GGG 0.454236 6.2:+72844058 MS.gene79792:CDS
ATGTAGCGGTGGTGCTGGGT+AGG 0.456539 6.2:+72844362 MS.gene79792:CDS
GGAATATGTAGCGGTGGTGC+TGG 0.460229 6.2:+72844357 MS.gene79792:CDS
GAGATGGAGGGTATGGTGGT+TGG 0.461094 6.2:+72844207 MS.gene79792:CDS
AGCACCACCGCTACATATTC+CGG 0.465295 6.2:-72844355 None:intergenic
GTAGCGGTGGTGCTGGGTAG+GGG 0.482792 6.2:+72844364 MS.gene79792:CDS
GTGGAACGGCGGTTTGGCGA+CGG 0.483995 6.2:+72844162 MS.gene79792:CDS
AGGTTTCCGGCGTCGCTCAC+CGG 0.486411 6.2:+72844336 MS.gene79792:CDS
TGGGAGGGTTCTTCCGCCGG+TGG 0.489383 6.2:+72844269 MS.gene79792:CDS
CATATTCCGGTGAGCGACGC+CGG 0.490853 6.2:-72844342 None:intergenic
TTATGATACGGCGGTGGAGA+TGG 0.491160 6.2:+72844191 MS.gene79792:CDS
GGCGGTGGAGATGGAGGGTA+TGG 0.494956 6.2:+72844200 MS.gene79792:CDS
CGGAACGGCGGAGAAGGTGG+TGG 0.499567 6.2:+72844085 MS.gene79792:CDS
GACCCACATTCCGGCGCCGG+TGG 0.509072 6.2:+72844006 MS.gene79792:CDS
ATCCACCGGCGCCGGAATGT+GGG 0.514623 6.2:-72844008 None:intergenic
TGCAATTCTATTGGATCCAC+CGG 0.514757 6.2:-72844022 None:intergenic
CAGGGAAGGTGATGCAAGAC+CGG 0.516382 6.2:+72844116 MS.gene79792:CDS
TGTTGGTGGCGGAGAGTCGC+CGG 0.518059 6.2:+72844296 MS.gene79792:CDS
CGGGACCCACATTCCGGCGC+CGG 0.518888 6.2:+72844003 MS.gene79792:CDS
GTGGGTCCCGGTGCTGTGAT+GGG 0.519400 6.2:-72843990 None:intergenic
GATGCAAGACCGGCGTCGCT+GGG 0.520035 6.2:+72844126 MS.gene79792:CDS
CGGCGCCGGAATGTGGGTCC+CGG 0.521728 6.2:-72844002 None:intergenic
TCAGAGTCCCATCACAGCAC+CGG 0.521733 6.2:+72843983 MS.gene79792:CDS
CCGCCGGTGGGAGATGTTGG+TGG 0.522082 6.2:+72844282 MS.gene79792:CDS
GGTCATCAGGAGAGGAATGG+TGG 0.529531 6.2:+72844228 MS.gene79792:CDS
GGGAGGGTTCTTCCGCCGGT+GGG 0.542588 6.2:+72844270 MS.gene79792:CDS
GAGAAAACCCGCCGCCGTGG+CGG 0.549405 6.2:+72844056 MS.gene79792:CDS
GGGACTCTGAATGTAATGGC+TGG 0.549894 6.2:-72843970 None:intergenic
TCTATTGGATCCACCGGCGC+CGG 0.553005 6.2:-72844016 None:intergenic
TGATGGGACTCTGAATGTAA+TGG 0.558769 6.2:-72843974 None:intergenic
CAGAGTCCCATCACAGCACC+GGG 0.572218 6.2:+72843984 MS.gene79792:CDS
TGATACGGCGGTGGAGATGG+AGG 0.572658 6.2:+72844194 MS.gene79792:CDS
GAATATGTAGCGGTGGTGCT+GGG 0.580569 6.2:+72844358 MS.gene79792:CDS
GTCATCAGGAGAGGAATGGT+GGG 0.581048 6.2:+72844229 MS.gene79792:CDS
TGGTGGCAGCTATGCAGGGA+AGG 0.582247 6.2:+72844102 MS.gene79792:CDS
TCAGGAGAGGAATGGTGGGA+GGG 0.592440 6.2:+72844233 MS.gene79792:CDS
CCGGTGGGAGATGTTGGTGG+CGG 0.594032 6.2:+72844285 MS.gene79792:CDS
GAAGAGAAAACCCGCCGCCG+TGG 0.596274 6.2:+72844053 MS.gene79792:CDS
ATCAGGAGAGGAATGGTGGG+AGG 0.599222 6.2:+72844232 MS.gene79792:CDS
GTTGGTCATCAGGAGAGGAA+TGG 0.600205 6.2:+72844225 MS.gene79792:CDS
GGTGGAGATGGAGGGTATGG+TGG 0.601560 6.2:+72844203 MS.gene79792:CDS
CTCACCGGAATATGTAGCGG+TGG 0.634455 6.2:+72844351 MS.gene79792:CDS
GATACGGCGGTGGAGATGGA+GGG 0.641759 6.2:+72844195 MS.gene79792:CDS
AAGGTGGTGGCAGCTATGCA+GGG 0.642093 6.2:+72844098 MS.gene79792:CDS
TGGTGGTTGGTCATCAGGAG+AGG 0.643264 6.2:+72844220 MS.gene79792:CDS
CCACCAACATCTCCCACCGG+CGG 0.661620 6.2:-72844282 None:intergenic
CCGCCACCAACATCTCCCAC+CGG 0.668859 6.2:-72844285 None:intergenic
TCGCTCACCGGAATATGTAG+CGG 0.682710 6.2:+72844348 MS.gene79792:CDS
CTATTACAAAGACTCACCGC+CGG 0.683157 6.2:-72844315 None:intergenic
TGGTGGCGGAGAGTCGCCGG+CGG 0.708882 6.2:+72844299 MS.gene79792:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
GAGTCTTTGTAATAGGTTTC+CGG + chr6.2:72844323-72844342 MS.gene79792:CDS 35.0%
CTTCTTGGGTGCAATTCTAT+TGG - chr6.2:72844034-72844053 None:intergenic 40.0%
TGATGGGACTCTGAATGTAA+TGG - chr6.2:72843977-72843996 None:intergenic 40.0%
TGCAATTCTATTGGATCCAC+CGG - chr6.2:72844025-72844044 None:intergenic 40.0%
!!! GAGATTTTTTGGAGGTGGAA+CGG + chr6.2:72844148-72844167 MS.gene79792:CDS 40.0%
CTATTACAAAGACTCACCGC+CGG - chr6.2:72844318-72844337 None:intergenic 45.0%
! GCGGGTTTTCTCTTCTTCTT+GGG - chr6.2:72844048-72844067 None:intergenic 45.0%
!!! ATTTTTTGGAGGTGGAACGG+CGG + chr6.2:72844151-72844170 MS.gene79792:CDS 45.0%
AAAAAATCTCCCAGCGACGC+CGG - chr6.2:72844138-72844157 None:intergenic 50.0%
AGCACCACCGCTACATATTC+CGG - chr6.2:72844358-72844377 None:intergenic 50.0%
CGGCGGTGAGTCTTTGTAAT+AGG + chr6.2:72844316-72844335 MS.gene79792:CDS 50.0%
GAATATGTAGCGGTGGTGCT+GGG + chr6.2:72844358-72844377 MS.gene79792:CDS 50.0%
GGGACTCTGAATGTAATGGC+TGG - chr6.2:72843973-72843992 None:intergenic 50.0%
GTCATCAGGAGAGGAATGGT+GGG + chr6.2:72844229-72844248 MS.gene79792:CDS 50.0%
GTTGGTCATCAGGAGAGGAA+TGG + chr6.2:72844225-72844244 MS.gene79792:CDS 50.0%
TCGCTCACCGGAATATGTAG+CGG + chr6.2:72844348-72844367 MS.gene79792:CDS 50.0%
TTATGATACGGCGGTGGAGA+TGG + chr6.2:72844191-72844210 MS.gene79792:CDS 50.0%
! CGACGGCGCGTTTTATGATA+CGG + chr6.2:72844179-72844198 MS.gene79792:CDS 50.0%
! GGAGCTTTTTGCTGATGGGA+GGG + chr6.2:72844254-72844273 MS.gene79792:CDS 50.0%
! GGAGGGAGCTTTTTGCTGAT+GGG + chr6.2:72844250-72844269 MS.gene79792:CDS 50.0%
!! GGCGGGTTTTCTCTTCTTCT+TGG - chr6.2:72844049-72844068 None:intergenic 50.0%
!!! GCTGGGAGATTTTTTGGAGG+TGG + chr6.2:72844143-72844162 MS.gene79792:CDS 50.0%
!!! GTCGCTGGGAGATTTTTTGG+AGG + chr6.2:72844140-72844159 MS.gene79792:CDS 50.0%
CAGGGAAGGTGATGCAAGAC+CGG + chr6.2:72844116-72844135 MS.gene79792:CDS 55.0%
CTCACCGGAATATGTAGCGG+TGG + chr6.2:72844351-72844370 MS.gene79792:CDS 55.0%
GGAATATGTAGCGGTGGTGC+TGG + chr6.2:72844357-72844376 MS.gene79792:CDS 55.0%
GGTCATCAGGAGAGGAATGG+TGG + chr6.2:72844228-72844247 MS.gene79792:CDS 55.0%
TCAGAGTCCCATCACAGCAC+CGG + chr6.2:72843983-72844002 MS.gene79792:CDS 55.0%
! AAGGTGGTGGCAGCTATGCA+GGG + chr6.2:72844098-72844117 MS.gene79792:CDS 55.0%
! ATCAGGAGAGGAATGGTGGG+AGG + chr6.2:72844232-72844251 MS.gene79792:CDS 55.0%
! CGCGTTTTATGATACGGCGG+TGG + chr6.2:72844185-72844204 MS.gene79792:CDS 55.0%
! CGGCGCGTTTTATGATACGG+CGG + chr6.2:72844182-72844201 MS.gene79792:CDS 55.0%
! GAGATGGAGGGTATGGTGGT+TGG + chr6.2:72844207-72844226 MS.gene79792:CDS 55.0%
! GGGAGCTTTTTGCTGATGGG+AGG + chr6.2:72844253-72844272 MS.gene79792:CDS 55.0%
! GGGAGGGAGCTTTTTGCTGA+TGG + chr6.2:72844249-72844268 MS.gene79792:CDS 55.0%
! GGGTATGGTGGTTGGTCATC+AGG + chr6.2:72844215-72844234 MS.gene79792:CDS 55.0%
! TCAGGAGAGGAATGGTGGGA+GGG + chr6.2:72844233-72844252 MS.gene79792:CDS 55.0%
! TGGTGGTTGGTCATCAGGAG+AGG + chr6.2:72844220-72844239 MS.gene79792:CDS 55.0%
!!! GGCGTCGCTGGGAGATTTTT+TGG + chr6.2:72844137-72844156 MS.gene79792:CDS 55.0%
CAGAGTCCCATCACAGCACC+GGG + chr6.2:72843984-72844003 MS.gene79792:CDS 60.0%
CATATTCCGGTGAGCGACGC+CGG - chr6.2:72844345-72844364 None:intergenic 60.0%
GATACGGCGGTGGAGATGGA+GGG + chr6.2:72844195-72844214 MS.gene79792:CDS 60.0%
TCTATTGGATCCACCGGCGC+CGG - chr6.2:72844019-72844038 None:intergenic 60.0%
TGATACGGCGGTGGAGATGG+AGG + chr6.2:72844194-72844213 MS.gene79792:CDS 60.0%
TGATGGGAGGGTTCTTCCGC+CGG + chr6.2:72844266-72844285 MS.gene79792:CDS 60.0%
TGGTGGCAGCTATGCAGGGA+AGG + chr6.2:72844102-72844121 MS.gene79792:CDS 60.0%
TTGGAGGTGGAACGGCGGTT+TGG + chr6.2:72844156-72844175 MS.gene79792:CDS 60.0%
! GAAGGTGGTGGCAGCTATGC+AGG + chr6.2:72844097-72844116 MS.gene79792:CDS 60.0%
! GGTGGAGATGGAGGGTATGG+TGG + chr6.2:72844203-72844222 MS.gene79792:CDS 60.0%
AGGTTTCCGGCGTCGCTCAC+CGG + chr6.2:72844336-72844355 MS.gene79792:CDS 65.0%
CCACCAACATCTCCCACCGG+CGG - chr6.2:72844285-72844304 None:intergenic 65.0%
CCGCCACCAACATCTCCCAC+CGG - chr6.2:72844288-72844307 None:intergenic 65.0%
CTTCCGCCGGTGGGAGATGT+TGG + chr6.2:72844279-72844298 MS.gene79792:CDS 65.0%
GAAGAGAAAACCCGCCGCCG+TGG + chr6.2:72844053-72844072 MS.gene79792:CDS 65.0%
GATGCAAGACCGGCGTCGCT+GGG + chr6.2:72844126-72844145 MS.gene79792:CDS 65.0%
GGCGGTGGAGATGGAGGGTA+TGG + chr6.2:72844200-72844219 MS.gene79792:CDS 65.0%
TGATGCAAGACCGGCGTCGC+TGG + chr6.2:72844125-72844144 MS.gene79792:CDS 65.0%
! ATCCACCGGCGCCGGAATGT+GGG - chr6.2:72844011-72844030 None:intergenic 65.0%
! CAGCACCGGGACCCACATTC+CGG + chr6.2:72843997-72844016 MS.gene79792:CDS 65.0%
! CCGGTGGGAGATGTTGGTGG+CGG + chr6.2:72844285-72844304 MS.gene79792:CDS 65.0%
! GTGGAACGGCGGTTTGGCGA+CGG + chr6.2:72844162-72844181 MS.gene79792:CDS 65.0%
!! GTGGGTCCCGGTGCTGTGAT+GGG - chr6.2:72843993-72844012 None:intergenic 65.0%
!! TGTGGGTCCCGGTGCTGTGA+TGG - chr6.2:72843994-72844013 None:intergenic 65.0%
!! TGTTGGTGGCGGAGAGTCGC+CGG + chr6.2:72844296-72844315 MS.gene79792:CDS 65.0%
AGAAAACCCGCCGCCGTGGC+GGG + chr6.2:72844057-72844076 MS.gene79792:CDS 70.0%
CCGCCGGTGGGAGATGTTGG+TGG + chr6.2:72844282-72844301 MS.gene79792:CDS 70.0%
CGGAACGGCGGAGAAGGTGG+TGG + chr6.2:72844085-72844104 MS.gene79792:CDS 70.0%
GAGAAAACCCGCCGCCGTGG+CGG + chr6.2:72844056-72844075 MS.gene79792:CDS 70.0%
GGGAGGGTTCTTCCGCCGGT+GGG + chr6.2:72844270-72844289 MS.gene79792:CDS 70.0%
TGGGAGGGTTCTTCCGCCGG+TGG + chr6.2:72844269-72844288 MS.gene79792:CDS 70.0%
! GATCCACCGGCGCCGGAATG+TGG - chr6.2:72844012-72844031 None:intergenic 70.0%
AAAACCCGCCGCCGTGGCGG+GGG + chr6.2:72844059-72844078 MS.gene79792:CDS 75.0%
CGGCGGAACGGCGGAGAAGG+TGG + chr6.2:72844082-72844101 MS.gene79792:CDS 75.0%
CGGGACCCACATTCCGGCGC+CGG + chr6.2:72844003-72844022 MS.gene79792:CDS 75.0%
GAAAACCCGCCGCCGTGGCG+GGG + chr6.2:72844058-72844077 MS.gene79792:CDS 75.0%
! CGGCGCCGGAATGTGGGTCC+CGG - chr6.2:72844005-72844024 None:intergenic 75.0%
! GACCCACATTCCGGCGCCGG+TGG + chr6.2:72844006-72844025 MS.gene79792:CDS 75.0%
!! TGGTGGCGGAGAGTCGCCGG+CGG + chr6.2:72844299-72844318 MS.gene79792:CDS 75.0%
! GGGCGGCGGAACGGCGGAGA+AGG + chr6.2:72844079-72844098 MS.gene79792:CDS 80.0%
! CCGTTCCGCCGCCCCCGCCA+CGG - chr6.2:72844073-72844092 None:intergenic 85.0%
! TGGCGGGGGCGGCGGAACGG+CGG + chr6.2:72844073-72844092 MS.gene79792:CDS 85.0%
! TTCCGCCGCCCCCGCCACGG+CGG - chr6.2:72844070-72844089 None:intergenic 85.0%
!! CCGTGGCGGGGGCGGCGGAA+CGG + chr6.2:72844070-72844089 MS.gene79792:CDS 85.0%
!! ACCCGCCGCCGTGGCGGGGG+CGG + chr6.2:72844062-72844081 MS.gene79792:CDS 90.0%
! CGCCGCCCCCGCCACGGCGG+CGG - chr6.2:72844067-72844086 None:intergenic 95.0%
! GCCGCCCCCGCCACGGCGGC+GGG - chr6.2:72844066-72844085 None:intergenic 95.0%
!! CGCCGCCGTGGCGGGGGCGG+CGG + chr6.2:72844065-72844084 MS.gene79792:CDS 95.0%


Chromosome Type Strat End Strand Name
chr6.2 gene 72843955 72844383 72843955 ID=MS.gene79792
chr6.2 mRNA 72843955 72844383 72843955 ID=MS.gene79792.t1;Parent=MS.gene79792
chr6.2 exon 72843955 72844383 72843955 ID=MS.gene79792.t1.exon1;Parent=MS.gene79792.t1
chr6.2 CDS 72843955 72844383 72843955 ID=cds.MS.gene79792.t1;Parent=MS.gene79792.t1
Gene Sequence

>MS.gene79792

ATGGGAGTAAGTTTTCCAGCCATTACATTCAGAGTCCCATCACAGCACCGGGACCCACATTCCGGCGCCGGTGGATCCAATAGAATTGCACCCAAGAAGAAGAGAAAACCCGCCGCCGTGGCGGGGGCGGCGGAACGGCGGAGAAGGTGGTGGCAGCTATGCAGGGAAGGTGATGCAAGACCGGCGTCGCTGGGAGATTTTTTGGAGGTGGAACGGCGGTTTGGCGACGGCGCGTTTTATGATACGGCGGTGGAGATGGAGGGTATGGTGGTTGGTCATCAGGAGAGGAATGGTGGGAGGGAGCTTTTTGCTGATGGGAGGGTTCTTCCGCCGGTGGGAGATGTTGGTGGCGGAGAGTCGCCGGCGGTGAGTCTTTGTAATAGGTTTCCGGCGTCGCTCACCGGAATATGTAGCGGTGGTGCTGGGTAG

Protein sequence

>MS.gene79792.t1

MGVSFPAITFRVPSQHRDPHSGAGGSNRIAPKKKRKPAAVAGAAERRRRWWQLCREGDARPASLGDFLEVERRFGDGAFYDTAVEMEGMVVGHQERNGGRELFADGRVLPPVGDVGGGESPAVSLCNRFPASLTGICSGGAG