Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80273.t1 | XP_024638936.1 | 99.3 | 135 | 1 | 0 | 1 | 135 | 1 | 135 | 3.50E-69 | 270.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80273.t1 | O49453 | 62.6 | 131 | 43 | 2 | 9 | 133 | 18 | 148 | 8.4e-40 | 164.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80273.t1 | A0A072UE86 | 99.3 | 135 | 1 | 0 | 1 | 135 | 1 | 135 | 2.5e-69 | 270.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049435 | MS.gene80273 | 0.805485 | 1.31E-49 | -1.69E-46 |
| MS.gene049647 | MS.gene80273 | 0.807647 | 4.56E-50 | -1.69E-46 |
| MS.gene05016 | MS.gene80273 | 0.804254 | 2.36E-49 | -1.69E-46 |
| MS.gene050226 | MS.gene80273 | 0.80478 | 1.83E-49 | -1.69E-46 |
| MS.gene050227 | MS.gene80273 | 0.814517 | 1.48E-51 | -1.69E-46 |
| MS.gene050719 | MS.gene80273 | 0.815769 | 7.80E-52 | -1.69E-46 |
| MS.gene050721 | MS.gene80273 | 0.813373 | 2.65E-51 | -1.69E-46 |
| MS.gene050724 | MS.gene80273 | 0.80696 | 6.38E-50 | -1.69E-46 |
| MS.gene050807 | MS.gene80273 | 0.813385 | 2.63E-51 | -1.69E-46 |
| MS.gene050959 | MS.gene80273 | 0.81001 | 1.43E-50 | -1.69E-46 |
| MS.gene052176 | MS.gene80273 | 0.805567 | 1.25E-49 | -1.69E-46 |
| MS.gene052302 | MS.gene80273 | 0.802484 | 5.49E-49 | -1.69E-46 |
| MS.gene052376 | MS.gene80273 | 0.81034 | 1.21E-50 | -1.69E-46 |
| MS.gene052665 | MS.gene80273 | 0.808954 | 2.40E-50 | -1.69E-46 |
| MS.gene052856 | MS.gene80273 | 0.808775 | 2.62E-50 | -1.69E-46 |
| MS.gene052858 | MS.gene80273 | 0.805158 | 1.53E-49 | -1.69E-46 |
| MS.gene052860 | MS.gene80273 | 0.803365 | 3.61E-49 | -1.69E-46 |
| MS.gene053054 | MS.gene80273 | -0.813271 | 2.78E-51 | -1.69E-46 |
| MS.gene053184 | MS.gene80273 | 0.809091 | 2.25E-50 | -1.69E-46 |
| MS.gene053221 | MS.gene80273 | 0.803109 | 4.08E-49 | -1.69E-46 |
| MS.gene053565 | MS.gene80273 | 0.824913 | 6.24E-54 | -1.69E-46 |
| MS.gene053630 | MS.gene80273 | 0.81207 | 5.10E-51 | -1.69E-46 |
| MS.gene054942 | MS.gene80273 | 0.80969 | 1.67E-50 | -1.69E-46 |
| MS.gene055357 | MS.gene80273 | 0.812114 | 4.99E-51 | -1.69E-46 |
| MS.gene057060 | MS.gene80273 | 0.80415 | 2.48E-49 | -1.69E-46 |
| MS.gene057394 | MS.gene80273 | 0.806614 | 7.55E-50 | -1.69E-46 |
| MS.gene059128 | MS.gene80273 | 0.808371 | 3.20E-50 | -1.69E-46 |
| MS.gene060480 | MS.gene80273 | 0.829613 | 4.67E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80273.t1 | MTR_5g034290 | 99.259 | 135 | 1 | 0 | 1 | 135 | 1 | 135 | 3.52e-97 | 275 |
| MS.gene80273.t1 | MTR_5g034290 | 99.259 | 135 | 1 | 0 | 1 | 135 | 34 | 168 | 5.37e-97 | 276 |
| MS.gene80273.t1 | MTR_8g064590 | 72.593 | 135 | 37 | 0 | 1 | 135 | 1 | 135 | 5.04e-70 | 207 |
| MS.gene80273.t1 | MTR_2g014360 | 64.493 | 138 | 43 | 2 | 4 | 135 | 13 | 150 | 7.55e-60 | 181 |
| MS.gene80273.t1 | MTR_2g090635 | 63.971 | 136 | 45 | 1 | 4 | 135 | 3 | 138 | 3.06e-58 | 177 |
| MS.gene80273.t1 | MTR_6g060020 | 63.636 | 99 | 35 | 1 | 37 | 135 | 1 | 98 | 2.01e-37 | 123 |
| MS.gene80273.t1 | MTR_5g083900 | 47.967 | 123 | 55 | 2 | 11 | 132 | 111 | 225 | 3.59e-26 | 98.6 |
| MS.gene80273.t1 | MTR_5g083870 | 44.275 | 131 | 54 | 5 | 11 | 133 | 5 | 124 | 3.19e-21 | 82.8 |
| MS.gene80273.t1 | MTR_2g090640 | 55.556 | 81 | 32 | 1 | 54 | 130 | 456 | 536 | 4.97e-20 | 85.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80273.t1 | AT1G23750 | 66.912 | 136 | 44 | 1 | 1 | 135 | 1 | 136 | 1.32e-65 | 196 |
| MS.gene80273.t1 | AT1G10590 | 64.706 | 136 | 45 | 2 | 1 | 133 | 1 | 136 | 9.51e-59 | 178 |
| MS.gene80273.t1 | AT1G10590 | 64.706 | 136 | 45 | 2 | 1 | 133 | 1 | 136 | 9.51e-59 | 178 |
| MS.gene80273.t1 | AT1G10590 | 64.706 | 136 | 45 | 2 | 1 | 133 | 15 | 150 | 2.28e-58 | 178 |
| MS.gene80273.t1 | AT2G33845 | 64.662 | 133 | 36 | 2 | 9 | 135 | 53 | 180 | 1.79e-55 | 171 |
| MS.gene80273.t1 | AT4G28440 | 62.595 | 131 | 43 | 2 | 9 | 133 | 18 | 148 | 1.25e-53 | 166 |
| MS.gene80273.t1 | AT1G03810 | 58.915 | 129 | 50 | 1 | 9 | 134 | 15 | 143 | 4.96e-50 | 156 |
| MS.gene80273.t1 | AT1G23750 | 67.677 | 99 | 32 | 0 | 37 | 135 | 1 | 99 | 5.63e-48 | 150 |
Find 37 sgRNAs with CRISPR-Local
Find 230 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCTTTGAACATGTCAATTT+TGG | 0.129132 | 5.4:-24249781 | None:intergenic |
| TCACCAGTTCATACTCAATA+AGG | 0.286045 | 5.4:-24249890 | None:intergenic |
| ACTGACAACCTTCACAATTA+TGG | 0.293544 | 5.4:-24246432 | None:intergenic |
| GAGACTTGGCGTGGACGTTT+GGG | 0.315053 | 5.4:+24249809 | MS.gene80273:CDS |
| TGAGACTTGGCGTGGACGTT+TGG | 0.333506 | 5.4:+24249808 | MS.gene80273:CDS |
| AAGGTTGATCAGCTTCTTCC+AGG | 0.334491 | 5.4:+24246395 | MS.gene80273:CDS |
| CAGATTCAAAACCAGCATTA+AGG | 0.346504 | 5.4:+24246357 | MS.gene80273:CDS |
| ATTCACTGCAAGACATGAAC+AGG | 0.373153 | 5.4:+24246553 | MS.gene80273:CDS |
| TCCTTGACTGTGAAGGCAGC+TGG | 0.397204 | 5.4:-24249852 | None:intergenic |
| GGCATTACGCACAATGATAG+TGG | 0.415069 | 5.4:-24249760 | None:intergenic |
| TATGCGAATGGCTGAATGTT+TGG | 0.421999 | 5.4:+24246505 | MS.gene80273:CDS |
| AACACTGGCTTCCTTAATGC+TGG | 0.441390 | 5.4:-24246368 | None:intergenic |
| AACATTCAGCCATTCGCATA+TGG | 0.450939 | 5.4:-24246502 | None:intergenic |
| GTCCCTTATTGAGTATGAAC+TGG | 0.483111 | 5.4:+24249887 | MS.gene80273:CDS |
| TGTTTGGTCGGTGATGAGAC+TGG | 0.494074 | 5.4:+24246521 | MS.gene80273:CDS |
| CACCAGTTCATACTCAATAA+GGG | 0.499513 | 5.4:-24249889 | None:intergenic |
| TGGCGGAGTTTAAGTCCATC+AGG | 0.511722 | 5.4:-24246482 | None:intergenic |
| TCAGTGGATTTGATGACAGA+AGG | 0.517018 | 5.4:+24249735 | MS.gene80273:intron |
| GAAGGTTGTCAGTGTTAAGT+TGG | 0.517071 | 5.4:+24246442 | MS.gene80273:CDS |
| GCCAAAATTGACATGTTCAA+AGG | 0.528131 | 5.4:+24249780 | MS.gene80273:CDS |
| TTCAAAGGAACGATGAGACT+TGG | 0.529623 | 5.4:+24249795 | MS.gene80273:CDS |
| CAGCTTCTTCCAGGGACTAG+AGG | 0.541595 | 5.4:+24246404 | MS.gene80273:CDS |
| CTGGTTCTGTGAGTTCAATA+CGG | 0.558165 | 5.4:-24249833 | None:intergenic |
| ATGGTGTGTCCTCTAGTCCC+TGG | 0.562120 | 5.4:-24246413 | None:intergenic |
| GATCAGAACGATCGTCCTGA+TGG | 0.566667 | 5.4:+24246467 | MS.gene80273:CDS |
| ATTATCTTCCTTGACTGTGA+AGG | 0.567103 | 5.4:-24249859 | None:intergenic |
| AGGTTGATCAGCTTCTTCCA+GGG | 0.568632 | 5.4:+24246396 | MS.gene80273:CDS |
| ACCAGCTGCCTTCACAGTCA+AGG | 0.573468 | 5.4:+24249851 | MS.gene80273:CDS |
| TGATCAACCTTACAAAACAC+TGG | 0.599982 | 5.4:-24246383 | None:intergenic |
| AGACTTGGCGTGGACGTTTG+GGG | 0.606683 | 5.4:+24249810 | MS.gene80273:CDS |
| TAAACTCCGCCATATGCGAA+TGG | 0.608412 | 5.4:+24246493 | MS.gene80273:CDS |
| GTTTGGTCGGTGATGAGACT+GGG | 0.632676 | 5.4:+24246522 | MS.gene80273:CDS |
| CGAATGGCTGAATGTTTGGT+CGG | 0.643996 | 5.4:+24246509 | MS.gene80273:CDS |
| AGGACACACCATAATTGTGA+AGG | 0.646823 | 5.4:+24246424 | MS.gene80273:CDS |
| ATTCAGCCATTCGCATATGG+CGG | 0.659185 | 5.4:-24246499 | None:intergenic |
| AGGAACGATGAGACTTGGCG+TGG | 0.682334 | 5.4:+24249800 | MS.gene80273:CDS |
| TTCACTGCAAGACATGAACA+GGG | 0.737603 | 5.4:+24246554 | MS.gene80273:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTAAATAAAAACTTATCAT+TGG | - | chr5.4:24249621-24249640 | None:intergenic | 10.0% |
| !!! | CTTTGTTTAATTTTATTTTT+GGG | + | chr5.4:24246654-24246673 | MS.gene80273:intron | 10.0% |
| !!! | TCTTTGTTTAATTTTATTTT+TGG | + | chr5.4:24246653-24246672 | MS.gene80273:intron | 10.0% |
| !!! | TTTGTTTAATTTTATTTTTG+GGG | + | chr5.4:24246655-24246674 | MS.gene80273:intron | 10.0% |
| !! | AAATAGTAACAAGTAAAAAA+TGG | - | chr5.4:24248551-24248570 | None:intergenic | 15.0% |
| !!! | AAGCATCTTTTTTTTTTTTT+TGG | + | chr5.4:24249199-24249218 | MS.gene80273:intron | 15.0% |
| !!! | GATGTAAATTTTAAAAACAA+TGG | + | chr5.4:24248076-24248095 | MS.gene80273:intron | 15.0% |
| !! | AAAATCCTTAAATGTGAAAT+AGG | + | chr5.4:24247440-24247459 | MS.gene80273:intron | 20.0% |
| !! | AATTACAATCTAACAATTCA+TGG | - | chr5.4:24249436-24249455 | None:intergenic | 20.0% |
| !! | TTTAACCTATTTCACATTTA+AGG | - | chr5.4:24247448-24247467 | None:intergenic | 20.0% |
| !!! | AAACTATAAGAGAAACTTTT+AGG | + | chr5.4:24249032-24249051 | MS.gene80273:intron | 20.0% |
| !!! | AGTATTTATTTTCACTTTAC+AGG | - | chr5.4:24247014-24247033 | None:intergenic | 20.0% |
| !!! | ATAGAATTCTTATTCTTTTG+TGG | + | chr5.4:24248673-24248692 | MS.gene80273:intron | 20.0% |
| !!! | ATTATGTTTTTATCAAGATG+AGG | + | chr5.4:24248818-24248837 | MS.gene80273:intron | 20.0% |
| !!! | CAAATTTTAAGATGATATCT+CGG | - | chr5.4:24248376-24248395 | None:intergenic | 20.0% |
| !!! | TAGAATTCTTATTCTTTTGT+GGG | + | chr5.4:24248674-24248693 | MS.gene80273:intron | 20.0% |
| !!! | TATTTCACATTTAAGGATTT+TGG | - | chr5.4:24247441-24247460 | None:intergenic | 20.0% |
| !!! | TTCTATTTTGTCAATTTTGT+CGG | + | chr5.4:24246894-24246913 | MS.gene80273:intron | 20.0% |
| !!! | TTTTACCTTAACCTTAATAA+GGG | + | chr5.4:24248234-24248253 | MS.gene80273:intron | 20.0% |
| ! | AAAAATCTGCCATAGAAATA+TGG | - | chr5.4:24249300-24249319 | None:intergenic | 25.0% |
| ! | AAAAGATCTTTATTCCACTT+TGG | + | chr5.4:24248001-24248020 | MS.gene80273:intron | 25.0% |
| ! | AAATTAATCCTTCATGTACT+TGG | + | chr5.4:24247686-24247705 | MS.gene80273:intron | 25.0% |
| ! | AAATTTCAAATCATACAGTC+GGG | - | chr5.4:24247980-24247999 | None:intergenic | 25.0% |
| ! | AAGCACTAAAATATTTGTGT+CGG | - | chr5.4:24247722-24247741 | None:intergenic | 25.0% |
| ! | ACAAATTAACTATCTATCTC+TGG | + | chr5.4:24248714-24248733 | MS.gene80273:intron | 25.0% |
| ! | ACATGTATTACTAACTATCT+AGG | - | chr5.4:24249462-24249481 | None:intergenic | 25.0% |
| ! | AGATTTAGAGATTAATGAGT+TGG | + | chr5.4:24249057-24249076 | MS.gene80273:intron | 25.0% |
| ! | ATCAACTAAGATAACAAACA+AGG | - | chr5.4:24247556-24247575 | None:intergenic | 25.0% |
| ! | ATTTACAATGTCTGTGAAAT+TGG | + | chr5.4:24247647-24247666 | MS.gene80273:intron | 25.0% |
| ! | CAAATTTCAAATCATACAGT+CGG | - | chr5.4:24247981-24248000 | None:intergenic | 25.0% |
| ! | CATGTATTACTAACTATCTA+GGG | - | chr5.4:24249461-24249480 | None:intergenic | 25.0% |
| ! | CTAATGCTAATCAAATATTC+AGG | + | chr5.4:24247943-24247962 | MS.gene80273:intron | 25.0% |
| ! | GTTCTATCATAAACCATATT+TGG | - | chr5.4:24249085-24249104 | None:intergenic | 25.0% |
| ! | TATCAATAGCTTATTTCCTT+TGG | - | chr5.4:24248056-24248075 | None:intergenic | 25.0% |
| ! | TTAACATATCTGAATCATTC+TGG | + | chr5.4:24247227-24247246 | MS.gene80273:intron | 25.0% |
| ! | TTTGCGTAATAATTACTCTA+TGG | + | chr5.4:24247792-24247811 | MS.gene80273:intron | 25.0% |
| !! | GAATATGATTTTATCCTTAC+AGG | - | chr5.4:24247381-24247400 | None:intergenic | 25.0% |
| !! | GTTTTACCTTAACCTTAATA+AGG | + | chr5.4:24248233-24248252 | MS.gene80273:intron | 25.0% |
| !! | TAGTTGATCTCAATGATTTT+GGG | + | chr5.4:24247568-24247587 | MS.gene80273:intron | 25.0% |
| !! | TTAGTTGATCTCAATGATTT+TGG | + | chr5.4:24247567-24247586 | MS.gene80273:intron | 25.0% |
| !!! | AAAGAAGAACTCATTGATTT+TGG | + | chr5.4:24247591-24247610 | MS.gene80273:intron | 25.0% |
| !!! | AATCTTTTGATTATCCTGTA+AGG | + | chr5.4:24247364-24247383 | MS.gene80273:intron | 25.0% |
| !!! | ATATTTCTATGGCAGATTTT+TGG | + | chr5.4:24249299-24249318 | MS.gene80273:intron | 25.0% |
| !!! | ATTCTGGTTCTATATTTGTT+CGG | - | chr5.4:24246728-24246747 | None:intergenic | 25.0% |
| !!! | ATTCTTTTGTTATTCTGCAT+GGG | + | chr5.4:24246691-24246710 | MS.gene80273:intron | 25.0% |
| !!! | CTATACTTTTGAAAACTACA+TGG | - | chr5.4:24247284-24247303 | None:intergenic | 25.0% |
| !!! | GGTCTTTTAGATTTGTTATT+AGG | - | chr5.4:24248355-24248374 | None:intergenic | 25.0% |
| !!! | TCTATTTTGTTTGGTTTCAT+GGG | + | chr5.4:24246814-24246833 | MS.gene80273:intron | 25.0% |
| !!! | TTCTATTTTGTTTGGTTTCA+TGG | + | chr5.4:24246813-24246832 | MS.gene80273:intron | 25.0% |
| !!! | TTTAATTTTATTTTTGGGGC+TGG | + | chr5.4:24246659-24246678 | MS.gene80273:intron | 25.0% |
| AAAATAGAACACACAACACA+TGG | - | chr5.4:24246802-24246821 | None:intergenic | 30.0% | |
| AAATATAGAACCAGAATGGA+TGG | + | chr5.4:24246731-24246750 | MS.gene80273:intron | 30.0% | |
| AAATTAGAACCGAAGGAAAT+AGG | - | chr5.4:24249706-24249725 | None:intergenic | 30.0% | |
| AAGAAAACTCAACTCATTCA+TGG | - | chr5.4:24249674-24249693 | None:intergenic | 30.0% | |
| AATTCTATCACGTATTCAGA+AGG | - | chr5.4:24247867-24247886 | None:intergenic | 30.0% | |
| AATTTCAAATCATACAGTCG+GGG | - | chr5.4:24247979-24247998 | None:intergenic | 30.0% | |
| ACAATCTAACAATTCATGGT+AGG | - | chr5.4:24249432-24249451 | None:intergenic | 30.0% | |
| ACAGGATAATCAAAAGATTC+AGG | - | chr5.4:24247363-24247382 | None:intergenic | 30.0% | |
| AGTAAGATTTCAAGAGTTAG+AGG | + | chr5.4:24248998-24249017 | MS.gene80273:intron | 30.0% | |
| CATAATCTGTGATAACTTCT+AGG | + | chr5.4:24247825-24247844 | MS.gene80273:intron | 30.0% | |
| CTAGAAGTTATCACAGATTA+TGG | - | chr5.4:24247827-24247846 | None:intergenic | 30.0% | |
| GAACAAATATAGAACCAGAA+TGG | + | chr5.4:24246727-24246746 | MS.gene80273:intron | 30.0% | |
| GTAGAAGAAGAACAGTAAAA+TGG | - | chr5.4:24248422-24248441 | None:intergenic | 30.0% | |
| TATTTCAACCAAGTACATGA+AGG | - | chr5.4:24247697-24247716 | None:intergenic | 30.0% | |
| TCAACTACATAGTAGAGATA+TGG | - | chr5.4:24248269-24248288 | None:intergenic | 30.0% | |
| TCTGAATACGTGATAGAATT+TGG | + | chr5.4:24247867-24247886 | MS.gene80273:intron | 30.0% | |
| TGGTTTATGATAGAACATTC+TGG | + | chr5.4:24249089-24249108 | MS.gene80273:intron | 30.0% | |
| TTCATGTACTTGGTTGAAAT+AGG | + | chr5.4:24247696-24247715 | MS.gene80273:intron | 30.0% | |
| TTCTTTACATTGTCTTCTCT+TGG | - | chr5.4:24248115-24248134 | None:intergenic | 30.0% | |
| ! | AAAAAGTACAGGAACTTAAC+TGG | - | chr5.4:24247082-24247101 | None:intergenic | 30.0% |
| ! | ATAAACCCAACATTTTACCA+CGG | - | chr5.4:24248605-24248624 | None:intergenic | 30.0% |
| ! | ATTCTTATTCTTTTGTGGGA+AGG | + | chr5.4:24248678-24248697 | MS.gene80273:intron | 30.0% |
| ! | ATTTAAAGTGTTCTCTGAAC+TGG | - | chr5.4:24248488-24248507 | None:intergenic | 30.0% |
| ! | CTAATTTTGCTTCTTTTCAG+TGG | + | chr5.4:24249719-24249738 | MS.gene80273:intron | 30.0% |
| ! | GTTCTGAATATCTATCTCAT+AGG | + | chr5.4:24247040-24247059 | MS.gene80273:intron | 30.0% |
| ! | GTTGTGTGTTCTATTTTGTT+TGG | + | chr5.4:24246805-24246824 | MS.gene80273:intron | 30.0% |
| ! | TAATGAGTTGGATCCAAATA+TGG | + | chr5.4:24249069-24249088 | MS.gene80273:intron | 30.0% |
| ! | TCCTTTGAACATGTCAATTT+TGG | - | chr5.4:24249784-24249803 | None:intergenic | 30.0% |
| ! | TGAGTAACCTTTAAGAAGTT+TGG | + | chr5.4:24248170-24248189 | MS.gene80273:intron | 30.0% |
| ! | TGCATCATATATAGCCTTTT+TGG | - | chr5.4:24247108-24247127 | None:intergenic | 30.0% |
| ! | TTCTTTTCCTGAATGATTGT+TGG | + | chr5.4:24247509-24247528 | MS.gene80273:intron | 30.0% |
| !! | CTCTACTATGTAGTTGATAA+CGG | + | chr5.4:24248272-24248291 | MS.gene80273:intron | 30.0% |
| !! | CTTTTGAAAACTACATGGTA+AGG | - | chr5.4:24247279-24247298 | None:intergenic | 30.0% |
| !! | CTTTTTGGTCAAAAAAGTAC+AGG | - | chr5.4:24247093-24247112 | None:intergenic | 30.0% |
| !! | GTTTCTCTTATAGTTTTGCT+AGG | - | chr5.4:24249028-24249047 | None:intergenic | 30.0% |
| !!! | CATTCTTTTGTTATTCTGCA+TGG | + | chr5.4:24246690-24246709 | MS.gene80273:intron | 30.0% |
| !!! | CTGTACTTTTTTGACCAAAA+AGG | + | chr5.4:24247091-24247110 | MS.gene80273:intron | 30.0% |
| !!! | GCTACTCTCTAAAGTAATTT+TGG | + | chr5.4:24246948-24246967 | MS.gene80273:intron | 30.0% |
| !!! | TTCTTTTGTTATTCTGCATG+GGG | + | chr5.4:24246692-24246711 | MS.gene80273:intron | 30.0% |
| AAAAAAAAGATGCTTCGCGA+AGG | - | chr5.4:24249194-24249213 | None:intergenic | 35.0% | |
| AAAAAAAGATGCTTCGCGAA+GGG | - | chr5.4:24249193-24249212 | None:intergenic | 35.0% | |
| AAACATGCCAACAATCATTC+AGG | - | chr5.4:24247519-24247538 | None:intergenic | 35.0% | |
| AACAAACAAGGCATATCTCT+TGG | - | chr5.4:24247544-24247563 | None:intergenic | 35.0% | |
| ACAATGTCTGTGAAATTGGA+GGG | + | chr5.4:24247651-24247670 | MS.gene80273:intron | 35.0% | |
| ACAATTCATGGTAGGAACAT+AGG | - | chr5.4:24249424-24249443 | None:intergenic | 35.0% | |
| ACACATTAGAGAGAGAATTG+GGG | + | chr5.4:24248890-24248909 | MS.gene80273:intron | 35.0% | |
| ACTGACAACCTTCACAATTA+TGG | - | chr5.4:24246435-24246454 | None:intergenic | 35.0% | |
| ACTGTTATCTACCACAAACA+TGG | - | chr5.4:24249517-24249536 | None:intergenic | 35.0% | |
| AGAAGCAAAATTAGAACCGA+AGG | - | chr5.4:24249713-24249732 | None:intergenic | 35.0% | |
| AGACATAAAACCATCCATTC+TGG | - | chr5.4:24246744-24246763 | None:intergenic | 35.0% | |
| AGACTCTTACTAGATTCAGA+CGG | - | chr5.4:24247745-24247764 | None:intergenic | 35.0% | |
| AGATATAGAGTTGCTGATAG+CGG | - | chr5.4:24249372-24249391 | None:intergenic | 35.0% | |
| AGTAGCCCTTATTAAGGTTA+AGG | - | chr5.4:24248242-24248261 | None:intergenic | 35.0% | |
| ATCTCATAGGAAACTAATCG+AGG | + | chr5.4:24247053-24247072 | MS.gene80273:intron | 35.0% | |
| ATGTAAGAGTTCCATGTTTG+TGG | + | chr5.4:24249503-24249522 | MS.gene80273:intron | 35.0% | |
| ATGTCCAATGCTATACAAGA+GGG | - | chr5.4:24248309-24248328 | None:intergenic | 35.0% | |
| ATTATCTTCCTTGACTGTGA+AGG | - | chr5.4:24249862-24249881 | None:intergenic | 35.0% | |
| CACCAGTTCATACTCAATAA+GGG | - | chr5.4:24249892-24249911 | None:intergenic | 35.0% | |
| CAGATTCAAAACCAGCATTA+AGG | + | chr5.4:24246357-24246376 | MS.gene80273:CDS | 35.0% | |
| CTTCTTAAAGGTTACTCAAG+AGG | - | chr5.4:24248168-24248187 | None:intergenic | 35.0% | |
| GACACATTAGAGAGAGAATT+GGG | + | chr5.4:24248889-24248908 | MS.gene80273:intron | 35.0% | |
| GAGAAACTTGTAGATTCTGT+AGG | + | chr5.4:24248954-24248973 | MS.gene80273:intron | 35.0% | |
| GAGCTAACCAAACTTCTTAA+AGG | - | chr5.4:24248180-24248199 | None:intergenic | 35.0% | |
| GCCAAAATTGACATGTTCAA+AGG | + | chr5.4:24249780-24249799 | MS.gene80273:CDS | 35.0% | |
| GCCATAGAAATATGGTGTAA+TGG | - | chr5.4:24249292-24249311 | None:intergenic | 35.0% | |
| TAATTACTCTATGGTTGCAG+TGG | + | chr5.4:24247801-24247820 | MS.gene80273:intron | 35.0% | |
| TACAATGTCTGTGAAATTGG+AGG | + | chr5.4:24247650-24247669 | MS.gene80273:intron | 35.0% | |
| TACATAGAATCCGTATGCTA+GGG | - | chr5.4:24248650-24248669 | None:intergenic | 35.0% | |
| TCACCAGTTCATACTCAATA+AGG | - | chr5.4:24249893-24249912 | None:intergenic | 35.0% | |
| TCAGCAACTCTATATCTAGT+TGG | + | chr5.4:24249375-24249394 | MS.gene80273:intron | 35.0% | |
| TCATGACATCCTATTTCCTT+CGG | + | chr5.4:24249694-24249713 | MS.gene80273:intron | 35.0% | |
| TGAATGATTGTTGGCATGTT+TGG | + | chr5.4:24247518-24247537 | MS.gene80273:intron | 35.0% | |
| TGACACATTAGAGAGAGAAT+TGG | + | chr5.4:24248888-24248907 | MS.gene80273:intron | 35.0% | |
| TGATCAACCTTACAAAACAC+TGG | - | chr5.4:24246386-24246405 | None:intergenic | 35.0% | |
| TTACATTGTCTTCTCTTGGA+AGG | - | chr5.4:24248111-24248130 | None:intergenic | 35.0% | |
| TTAGTGCTAGAACATGCAAA+TGG | - | chr5.4:24247132-24247151 | None:intergenic | 35.0% | |
| TTGGCACAAGATATCAACAT+AGG | + | chr5.4:24249394-24249413 | MS.gene80273:intron | 35.0% | |
| TTTGTGGTAGATAACAGTCT+TGG | + | chr5.4:24249519-24249538 | MS.gene80273:intron | 35.0% | |
| TTTGTGTAATGTGAACCAGA+AGG | + | chr5.4:24246926-24246945 | MS.gene80273:intron | 35.0% | |
| ! | AAGTTTTCCTTACTGCATCA+TGG | + | chr5.4:24246603-24246622 | MS.gene80273:intron | 35.0% |
| ! | ATTTTTCATTTGCCCGCTAT+AGG | + | chr5.4:24249266-24249285 | MS.gene80273:intron | 35.0% |
| ! | GCCATTACACCATATTTCTA+TGG | + | chr5.4:24249288-24249307 | MS.gene80273:intron | 35.0% |
| ! | TCTGAAAAGTGTAGAACCAA+AGG | + | chr5.4:24248037-24248056 | MS.gene80273:intron | 35.0% |
| !! | AACTACCAGACCATTTTAAC+AGG | - | chr5.4:24247774-24247793 | None:intergenic | 35.0% |
| AAAAAAGATGCTTCGCGAAG+GGG | - | chr5.4:24249192-24249211 | None:intergenic | 40.0% | |
| AAACCACCTAAGCCTACTAT+AGG | - | chr5.4:24248923-24248942 | None:intergenic | 40.0% | |
| AACATTCAGCCATTCGCATA+TGG | - | chr5.4:24246505-24246524 | None:intergenic | 40.0% | |
| AAGTTGCTGATAGCAGATTC+TGG | - | chr5.4:24249332-24249351 | None:intergenic | 40.0% | |
| AGAATATTGTGCAGATGCTC+AGG | + | chr5.4:24248131-24248150 | MS.gene80273:intron | 40.0% | |
| AGGACACACCATAATTGTGA+AGG | + | chr5.4:24246424-24246443 | MS.gene80273:CDS | 40.0% | |
| ATAGTAGGCTTAGGTGGTTT+GGG | + | chr5.4:24248923-24248942 | MS.gene80273:intron | 40.0% | |
| ATCAAGGATTCCCTAGCATA+CGG | + | chr5.4:24248637-24248656 | MS.gene80273:intron | 40.0% | |
| ATGGAACATGCTCTCAATTC+GGG | - | chr5.4:24246783-24246802 | None:intergenic | 40.0% | |
| ATGGCCATACAGACGAAATT+AGG | - | chr5.4:24249655-24249674 | None:intergenic | 40.0% | |
| ATTCACTGCAAGACATGAAC+AGG | + | chr5.4:24246553-24246572 | MS.gene80273:CDS | 40.0% | |
| CATGGAACATGCTCTCAATT+CGG | - | chr5.4:24246784-24246803 | None:intergenic | 40.0% | |
| CTACATAGAATCCGTATGCT+AGG | - | chr5.4:24248651-24248670 | None:intergenic | 40.0% | |
| CTGTAGGAGAGTAGATTAGA+TGG | + | chr5.4:24248970-24248989 | MS.gene80273:intron | 40.0% | |
| GAAGAAATTCAGCAACCCAA+TGG | + | chr5.4:24247303-24247322 | MS.gene80273:intron | 40.0% | |
| GAAGGTTGTCAGTGTTAAGT+TGG | + | chr5.4:24246442-24246461 | MS.gene80273:CDS | 40.0% | |
| GATGTCCAATGCTATACAAG+AGG | - | chr5.4:24248310-24248329 | None:intergenic | 40.0% | |
| GGTCAAAGTAGCCCTTATTA+AGG | - | chr5.4:24248248-24248267 | None:intergenic | 40.0% | |
| GGTTAGTATCTGCTTAAACG+CGG | - | chr5.4:24248401-24248420 | None:intergenic | 40.0% | |
| GTCCCTTATTGAGTATGAAC+TGG | + | chr5.4:24249887-24249906 | MS.gene80273:CDS | 40.0% | |
| GTCTGTGAGACCTGTTAAAA+TGG | + | chr5.4:24247761-24247780 | MS.gene80273:intron | 40.0% | |
| GTGGTAAGACTAGACATGAT+AGG | + | chr5.4:24248857-24248876 | MS.gene80273:intron | 40.0% | |
| GTGTCCTAATTTCGTCTGTA+TGG | + | chr5.4:24249648-24249667 | MS.gene80273:intron | 40.0% | |
| GTTACTCAAGAGGAAAAGTG+AGG | - | chr5.4:24248158-24248177 | None:intergenic | 40.0% | |
| TAGGAGAGTAGATTAGATGG+AGG | + | chr5.4:24248973-24248992 | MS.gene80273:intron | 40.0% | |
| TATAGTAGGCTTAGGTGGTT+TGG | + | chr5.4:24248922-24248941 | MS.gene80273:intron | 40.0% | |
| TATGCGAATGGCTGAATGTT+TGG | + | chr5.4:24246505-24246524 | MS.gene80273:CDS | 40.0% | |
| TATGGTGTAATGGCCTATAG+CGG | - | chr5.4:24249282-24249301 | None:intergenic | 40.0% | |
| TCAGAAATTGCCTTCTCTGT+TGG | - | chr5.4:24247336-24247355 | None:intergenic | 40.0% | |
| TCTGGCGAAATATGATCAAG+AGG | + | chr5.4:24248732-24248751 | MS.gene80273:intron | 40.0% | |
| TGAGACCTGTTAAAATGGTC+TGG | + | chr5.4:24247766-24247785 | MS.gene80273:intron | 40.0% | |
| TGTTCTCTGAACTGGATGTA+TGG | - | chr5.4:24248480-24248499 | None:intergenic | 40.0% | |
| TTCAAAGGAACGATGAGACT+TGG | + | chr5.4:24249795-24249814 | MS.gene80273:CDS | 40.0% | |
| TTCACTGCAAGACATGAACA+GGG | + | chr5.4:24246554-24246573 | MS.gene80273:CDS | 40.0% | |
| TTCATGGTAGGAACATAGGT+TGG | - | chr5.4:24249420-24249439 | None:intergenic | 40.0% | |
| ! | AAGGAAGCCAGTGTTTTGTA+AGG | + | chr5.4:24246376-24246395 | MS.gene80273:CDS | 40.0% |
| ! | AGCATTGGACATCTAGAGTA+TGG | + | chr5.4:24248317-24248336 | MS.gene80273:intron | 40.0% |
| ! | TACTTTAGAGAGTAGCCTTC+TGG | - | chr5.4:24246944-24246963 | None:intergenic | 40.0% |
| ! | TCAGTGGATTTGATGACAGA+AGG | + | chr5.4:24249735-24249754 | MS.gene80273:intron | 40.0% |
| !! | CTGGTTCTGTGAGTTCAATA+CGG | - | chr5.4:24249836-24249855 | None:intergenic | 40.0% |
| !! | TCTGTTGGCTCTTTACCATT+GGG | - | chr5.4:24247321-24247340 | None:intergenic | 40.0% |
| AAAGTTGCGAGAGAGAAGAG+AGG | - | chr5.4:24248444-24248463 | None:intergenic | 45.0% | |
| ACACCTATAGTAGGCTTAGG+TGG | + | chr5.4:24248917-24248936 | MS.gene80273:intron | 45.0% | |
| AGCACACCTATAGTAGGCTT+AGG | + | chr5.4:24248914-24248933 | MS.gene80273:intron | 45.0% | |
| ATGGTGTAATGGCCTATAGC+GGG | - | chr5.4:24249281-24249300 | None:intergenic | 45.0% | |
| ATTCAGCCATTCGCATATGG+CGG | - | chr5.4:24246502-24246521 | None:intergenic | 45.0% | |
| CACACCCTCTTGTATAGCAT+TGG | + | chr5.4:24248302-24248321 | MS.gene80273:intron | 45.0% | |
| CGAATGGCTGAATGTTTGGT+CGG | + | chr5.4:24246509-24246528 | MS.gene80273:CDS | 45.0% | |
| GGCATTACGCACAATGATAG+TGG | - | chr5.4:24249763-24249782 | None:intergenic | 45.0% | |
| GTAAAACTCGCCTCTTGAAC+TGG | - | chr5.4:24248220-24248239 | None:intergenic | 45.0% | |
| TAAACTCCGCCATATGCGAA+TGG | + | chr5.4:24246493-24246512 | MS.gene80273:CDS | 45.0% | |
| TCAAGATGAGGATGATGCGT+TGG | + | chr5.4:24248830-24248849 | MS.gene80273:intron | 45.0% | |
| TCTCTGAACTGGATGTATGG+AGG | - | chr5.4:24248477-24248496 | None:intergenic | 45.0% | |
| TCTTCTCTCTCGCAACTTTG+TGG | + | chr5.4:24248445-24248464 | MS.gene80273:intron | 45.0% | |
| TGCAACACCATGATGCAGTA+AGG | - | chr5.4:24246613-24246632 | None:intergenic | 45.0% | |
| TGCAGCCGTGGTAAAATGTT+GGG | + | chr5.4:24248597-24248616 | MS.gene80273:intron | 45.0% | |
| TGGTAAAGAGCCAACAGAGA+AGG | + | chr5.4:24247323-24247342 | MS.gene80273:intron | 45.0% | |
| TTGCAGCCGTGGTAAAATGT+TGG | + | chr5.4:24248596-24248615 | MS.gene80273:intron | 45.0% | |
| ! | AAGCCTTATCCCACTAAGTG+GGG | - | chr5.4:24249138-24249157 | None:intergenic | 45.0% |
| ! | AAGGTTGATCAGCTTCTTCC+AGG | + | chr5.4:24246395-24246414 | MS.gene80273:CDS | 45.0% |
| ! | ACCACGGCTGCAATTTTAGA+TGG | - | chr5.4:24248589-24248608 | None:intergenic | 45.0% |
| ! | ACCATCTAAAATTGCAGCCG+TGG | + | chr5.4:24248585-24248604 | MS.gene80273:intron | 45.0% |
| ! | AGGTTGATCAGCTTCTTCCA+GGG | + | chr5.4:24246396-24246415 | MS.gene80273:CDS | 45.0% |
| ! | CAAGCCTTATCCCACTAAGT+GGG | - | chr5.4:24249139-24249158 | None:intergenic | 45.0% |
| !! | AACACTGGCTTCCTTAATGC+TGG | - | chr5.4:24246371-24246390 | None:intergenic | 45.0% |
| !! | CTCTGTTGGCTCTTTACCAT+TGG | - | chr5.4:24247322-24247341 | None:intergenic | 45.0% |
| !! | TTATTTAAATTTAATTATCA+AGG | + | chr5.4:24248621-24248640 | MS.gene80273:intron | 5.0% |
| AAATGCAACGCACGCCAAAG+TGG | - | chr5.4:24248018-24248037 | None:intergenic | 50.0% | |
| ACCCCAAAAGCCAGTTCAAG+AGG | + | chr5.4:24248207-24248226 | MS.gene80273:intron | 50.0% | |
| AGGATGATGCGTTGGATGTG+TGG | + | chr5.4:24248838-24248857 | MS.gene80273:intron | 50.0% | |
| CCACTTAGTGGGATAAGGCT+TGG | + | chr5.4:24249137-24249156 | MS.gene80273:intron | 50.0% | |
| CTCAATTCGGGAGGAAGAAC+TGG | - | chr5.4:24246771-24246790 | None:intergenic | 50.0% | |
| CTTAGTGGGATAAGGCTTGG+TGG | + | chr5.4:24249140-24249159 | MS.gene80273:intron | 50.0% | |
| CTTATCCCACTAAGTGGGGT+CGG | - | chr5.4:24249134-24249153 | None:intergenic | 50.0% | |
| GAACATGCTCTCAATTCGGG+AGG | - | chr5.4:24246780-24246799 | None:intergenic | 50.0% | |
| GATCAGAACGATCGTCCTGA+TGG | + | chr5.4:24246467-24246486 | MS.gene80273:CDS | 50.0% | |
| GTTTGGTCGGTGATGAGACT+GGG | + | chr5.4:24246522-24246541 | MS.gene80273:CDS | 50.0% | |
| TGGCGGAGTTTAAGTCCATC+AGG | - | chr5.4:24246485-24246504 | None:intergenic | 50.0% | |
| TGGGGTAGCACACCTATAGT+AGG | + | chr5.4:24248908-24248927 | MS.gene80273:intron | 50.0% | |
| TGTTTGGTCGGTGATGAGAC+TGG | + | chr5.4:24246521-24246540 | MS.gene80273:CDS | 50.0% | |
| ! | CCAAGCCTTATCCCACTAAG+TGG | - | chr5.4:24249140-24249159 | None:intergenic | 50.0% |
| !!! | CGCCTCTTGAACTGGCTTTT+GGG | - | chr5.4:24248212-24248231 | None:intergenic | 50.0% |
| !!! | GCCTCTTGAACTGGCTTTTG+GGG | - | chr5.4:24248211-24248230 | None:intergenic | 50.0% |
| !!! | TCGCCTCTTGAACTGGCTTT+TGG | - | chr5.4:24248213-24248232 | None:intergenic | 50.0% |
| ACCAGCTGCCTTCACAGTCA+AGG | + | chr5.4:24249851-24249870 | MS.gene80273:CDS | 55.0% | |
| ACTAAGTGGGGTCGGCTACA+TGG | - | chr5.4:24249126-24249145 | None:intergenic | 55.0% | |
| AGACTTGGCGTGGACGTTTG+GGG | + | chr5.4:24249810-24249829 | MS.gene80273:CDS | 55.0% | |
| AGGAACGATGAGACTTGGCG+TGG | + | chr5.4:24249800-24249819 | MS.gene80273:CDS | 55.0% | |
| ATGGTGTGTCCTCTAGTCCC+TGG | - | chr5.4:24246416-24246435 | None:intergenic | 55.0% | |
| ATGTAGCCGACCCCACTTAG+TGG | + | chr5.4:24249125-24249144 | MS.gene80273:intron | 55.0% | |
| CAGCTTCTTCCAGGGACTAG+AGG | + | chr5.4:24246404-24246423 | MS.gene80273:CDS | 55.0% | |
| CGACCCCACTTAGTGGGATA+AGG | + | chr5.4:24249132-24249151 | MS.gene80273:intron | 55.0% | |
| GAGACTTGGCGTGGACGTTT+GGG | + | chr5.4:24249809-24249828 | MS.gene80273:CDS | 55.0% | |
| TCCTTGACTGTGAAGGCAGC+TGG | - | chr5.4:24249855-24249874 | None:intergenic | 55.0% | |
| TGAGACTTGGCGTGGACGTT+TGG | + | chr5.4:24249808-24249827 | MS.gene80273:CDS | 55.0% | |
| TGTAGCCGACCCCACTTAGT+GGG | + | chr5.4:24249126-24249145 | MS.gene80273:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 24246353 | 24249923 | 24246353 | ID=MS.gene80273 |
| chr5.4 | mRNA | 24246353 | 24249923 | 24246353 | ID=MS.gene80273.t1;Parent=MS.gene80273 |
| chr5.4 | exon | 24246353 | 24246575 | 24246353 | ID=MS.gene80273.t1.exon1;Parent=MS.gene80273.t1 |
| chr5.4 | CDS | 24246353 | 24246575 | 24246353 | ID=cds.MS.gene80273.t1;Parent=MS.gene80273.t1 |
| chr5.4 | exon | 24249739 | 24249923 | 24249739 | ID=MS.gene80273.t1.exon2;Parent=MS.gene80273.t1 |
| chr5.4 | CDS | 24249739 | 24249923 | 24249739 | ID=cds.MS.gene80273.t1;Parent=MS.gene80273.t1 |
| Gene Sequence |
| Protein sequence |
