Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81118.t1 | XP_024630171.1 | 99.7 | 664 | 2 | 0 | 1 | 664 | 1 | 664 | 0.00E+00 | 1244.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81118.t1 | Q6AVI0 | 33.8 | 672 | 406 | 10 | 3 | 659 | 56 | 703 | 3.0e-106 | 387.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81118.t1 | A0A396JB83 | 99.7 | 664 | 2 | 0 | 1 | 664 | 1 | 664 | 0.0e+00 | 1244.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049801 | MS.gene81118 | 0.804216 | 2.40E-49 | -1.69E-46 |
| MS.gene049983 | MS.gene81118 | 0.815829 | 7.57E-52 | -1.69E-46 |
| MS.gene050654 | MS.gene81118 | 0.838745 | 2.40E-57 | -1.69E-46 |
| MS.gene050737 | MS.gene81118 | 0.808273 | 3.36E-50 | -1.69E-46 |
| MS.gene050941 | MS.gene81118 | 0.825584 | 4.33E-54 | -1.69E-46 |
| MS.gene051541 | MS.gene81118 | 0.804025 | 2.63E-49 | -1.69E-46 |
| MS.gene053726 | MS.gene81118 | 0.808003 | 3.83E-50 | -1.69E-46 |
| MS.gene054479 | MS.gene81118 | 0.831648 | 1.48E-55 | -1.69E-46 |
| MS.gene055864 | MS.gene81118 | 0.819614 | 1.06E-52 | -1.69E-46 |
| MS.gene056045 | MS.gene81118 | 0.827823 | 1.26E-54 | -1.69E-46 |
| MS.gene056831 | MS.gene81118 | 0.811277 | 7.59E-51 | -1.69E-46 |
| MS.gene058081 | MS.gene81118 | 0.821874 | 3.20E-53 | -1.69E-46 |
| MS.gene058223 | MS.gene81118 | -0.808059 | 3.73E-50 | -1.69E-46 |
| MS.gene058429 | MS.gene81118 | 0.825192 | 5.36E-54 | -1.69E-46 |
| MS.gene059283 | MS.gene81118 | 0.808452 | 3.08E-50 | -1.69E-46 |
| MS.gene06010 | MS.gene81118 | 0.802144 | 6.45E-49 | -1.69E-46 |
| MS.gene060296 | MS.gene81118 | 0.85699 | 2.21E-62 | -1.69E-46 |
| MS.gene060520 | MS.gene81118 | 0.801805 | 7.57E-49 | -1.69E-46 |
| MS.gene060527 | MS.gene81118 | 0.809202 | 2.13E-50 | -1.69E-46 |
| MS.gene060851 | MS.gene81118 | 0.802479 | 5.50E-49 | -1.69E-46 |
| MS.gene060932 | MS.gene81118 | 0.832386 | 9.74E-56 | -1.69E-46 |
| MS.gene06121 | MS.gene81118 | 0.844074 | 9.47E-59 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81118.t1 | MTR_4g036325 | 41.837 | 98 | 55 | 2 | 136 | 231 | 1 | 98 | 1.07e-18 | 85.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81118.t1 | AT3G42170 | 29.466 | 655 | 416 | 9 | 9 | 658 | 39 | 652 | 1.61e-110 | 348 |
| MS.gene81118.t1 | AT3G42170 | 29.466 | 655 | 416 | 9 | 9 | 658 | 61 | 674 | 2.65e-110 | 348 |
| MS.gene81118.t1 | AT1G18560 | 23.766 | 547 | 364 | 15 | 135 | 663 | 143 | 654 | 3.48e-31 | 130 |
Find 136 sgRNAs with CRISPR-Local
Find 154 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTCTGACACCTGATTAAA+TGG | 0.177633 | 2.3:-32478377 | None:intergenic |
| TTGATTTCAACATATTAAAT+TGG | 0.234566 | 2.3:+32479981 | MS.gene81118:CDS |
| TAAGTTGTTCTCCATGATTT+TGG | 0.236559 | 2.3:+32478992 | MS.gene81118:CDS |
| GCGAGAGACTTATGCAAAAT+AGG | 0.259118 | 2.3:+32479054 | MS.gene81118:CDS |
| ATCAGATCTAGATAAGTATT+TGG | 0.283469 | 2.3:+32479934 | MS.gene81118:CDS |
| TGTCATGTCTCAGCTTGCTT+TGG | 0.296230 | 2.3:+32479133 | MS.gene81118:CDS |
| GAGTAGTTTCACGAATCTTA+TGG | 0.301903 | 2.3:-32479175 | None:intergenic |
| CTTCACCTTGAGAAGTTTCA+TGG | 0.319777 | 2.3:-32479904 | None:intergenic |
| GTCATGTCTCAGCTTGCTTT+GGG | 0.330005 | 2.3:+32479134 | MS.gene81118:CDS |
| TGCAATTACGAATTTCAGTT+TGG | 0.331695 | 2.3:+32478461 | MS.gene81118:CDS |
| TCATGTCTTGTCTGATGGAT+TGG | 0.341131 | 2.3:+32478958 | MS.gene81118:CDS |
| CTAACTGTATCATCTTTGTT+TGG | 0.343058 | 2.3:-32478492 | None:intergenic |
| TTCAGATAAAGAGATATTAT+AGG | 0.348146 | 2.3:-32479381 | None:intergenic |
| AGATCCGTGCATCAGTTCTT+TGG | 0.350965 | 2.3:+32479559 | MS.gene81118:CDS |
| AAGCAAGTTTGACGAGTATT+GGG | 0.351131 | 2.3:+32479595 | MS.gene81118:CDS |
| TCTGGTGCAACCTTTGACAT+TGG | 0.362920 | 2.3:-32480067 | None:intergenic |
| CTGGTGCAACCTTTGACATT+GGG | 0.369464 | 2.3:-32480066 | None:intergenic |
| GATAACATTGCCACAAGAAT+TGG | 0.370093 | 2.3:+32479032 | MS.gene81118:CDS |
| ACCAACTTCATCTTGAATCT+AGG | 0.373254 | 2.3:-32479659 | None:intergenic |
| TGAAGCTGCTTTAGAATTCA+AGG | 0.374920 | 2.3:+32479325 | MS.gene81118:CDS |
| CTTTACAACGAACATTCTAT+AGG | 0.378735 | 2.3:+32479758 | MS.gene81118:CDS |
| TCCGGCTACTGTCCAAGCTT+TGG | 0.384907 | 2.3:+32480144 | MS.gene81118:CDS |
| CTTTAAGTAGCTGGTAACTA+TGG | 0.392194 | 2.3:-32479423 | None:intergenic |
| TATTGGGACAAATGTAGCTT+AGG | 0.394286 | 2.3:+32479611 | MS.gene81118:CDS |
| GAAGCAAGTTTGACGAGTAT+TGG | 0.400049 | 2.3:+32479594 | MS.gene81118:CDS |
| TTGGCCTGGCAAGTTGAAAA+TGG | 0.402047 | 2.3:+32479809 | MS.gene81118:CDS |
| CCAAGCTTTGGTGTGTTCAC+AGG | 0.405757 | 2.3:+32480156 | MS.gene81118:CDS |
| CTTTGGTGTGTTCACAGGAT+TGG | 0.409892 | 2.3:+32480161 | MS.gene81118:CDS |
| CATGTCTTGTCTGATGGATT+GGG | 0.418740 | 2.3:+32478959 | MS.gene81118:CDS |
| AGGATTGATCCTTCTCATAC+TGG | 0.419866 | 2.3:+32478915 | MS.gene81118:CDS |
| GCAGTTCTCTTTCCTTGCCA+TGG | 0.420333 | 2.3:+32479834 | MS.gene81118:CDS |
| ATCTAAGGAACCATTTAATC+AGG | 0.421001 | 2.3:+32478367 | MS.gene81118:CDS |
| CTCATTGAACTTTGCCAGTA+CGG | 0.421556 | 2.3:-32479219 | None:intergenic |
| TCAGTATCAGTGCTGATGTT+TGG | 0.424836 | 2.3:+32478802 | MS.gene81118:CDS |
| GAAGAGTCCTTGATCGTGAT+TGG | 0.425558 | 2.3:+32480110 | MS.gene81118:CDS |
| CAAATTACATAGATGAATCA+TGG | 0.430651 | 2.3:+32478862 | MS.gene81118:CDS |
| TATGTAGAATTCCATTGCAT+TGG | 0.431099 | 2.3:-32479293 | None:intergenic |
| TTGAGCTTGTAACATTGAAT+CGG | 0.440885 | 2.3:+32478700 | MS.gene81118:CDS |
| CGAGTGGAACATCTCATCTA+AGG | 0.441776 | 2.3:+32478352 | MS.gene81118:CDS |
| CAACTTGCCAGGCCAATCCT+TGG | 0.447748 | 2.3:-32479802 | None:intergenic |
| ATTTCAACATATTAAATTGG+TGG | 0.455613 | 2.3:+32479984 | MS.gene81118:CDS |
| ATGAATCATGGGAGTTAAGA+AGG | 0.459505 | 2.3:+32478874 | MS.gene81118:CDS |
| GTAGGTTGAAATCAGTTGTA+TGG | 0.459893 | 2.3:+32478247 | MS.gene81118:CDS |
| CATGGTCTGCAAAGGACTCC+AGG | 0.460711 | 2.3:+32479852 | MS.gene81118:CDS |
| CAAGCTCAAACAAGGGCTGC+AGG | 0.467522 | 2.3:-32478686 | None:intergenic |
| AATGAGATGGCTAAAGAAGT+TGG | 0.467667 | 2.3:+32479236 | MS.gene81118:CDS |
| AATAGGTTTCTATATTGTAA+TGG | 0.471593 | 2.3:+32479071 | MS.gene81118:CDS |
| GCAAGAGAAAAGAGAAAGGA+AGG | 0.473008 | 2.3:+32478432 | MS.gene81118:CDS |
| AGAACAACCGTCCAAAATCA+TGG | 0.484208 | 2.3:-32479003 | None:intergenic |
| ATACATGTGTGGCGGTTTGT+AGG | 0.485501 | 2.3:+32478298 | MS.gene81118:CDS |
| TGATTGGAGCTCTCTTAATC+CGG | 0.487741 | 2.3:+32480126 | MS.gene81118:CDS |
| CCAACTTCATCTTGAATCTA+GGG | 0.493985 | 2.3:-32479658 | None:intergenic |
| CCTTGGTCATGAGAAGCTAA+TGG | 0.494671 | 2.3:-32479785 | None:intergenic |
| TTCCTTGCCATGGTCTGCAA+AGG | 0.494688 | 2.3:+32479844 | MS.gene81118:CDS |
| ATGAGATGGCTAAAGAAGTT+GGG | 0.495181 | 2.3:+32479237 | MS.gene81118:CDS |
| TCCGTGCATCAGTTCTTTGG+TGG | 0.497171 | 2.3:+32479562 | MS.gene81118:CDS |
| CTCTTTATCTGAAGTAGAGT+GGG | 0.502692 | 2.3:+32479391 | MS.gene81118:CDS |
| TGTAACATTGAATCGGGTTG+AGG | 0.503074 | 2.3:+32478707 | MS.gene81118:CDS |
| TAAAACATTTCGAGCCATCA+TGG | 0.504878 | 2.3:-32480038 | None:intergenic |
| CAACTTAACATCACAGAGCT+CGG | 0.505397 | 2.3:-32479510 | None:intergenic |
| GACATGCTACCGTAGATTTG+TGG | 0.505765 | 2.3:-32479695 | None:intergenic |
| TATTCTACATGGATATCCAT+TGG | 0.507850 | 2.3:+32478623 | MS.gene81118:CDS |
| ACCAAAGCTTGGACAGTAGC+CGG | 0.508782 | 2.3:-32480145 | None:intergenic |
| AACTTAACATCACAGAGCTC+GGG | 0.509660 | 2.3:-32479509 | None:intergenic |
| AGCTTCTCATGACCAAGGAT+TGG | 0.509709 | 2.3:+32479790 | MS.gene81118:CDS |
| AGCTGTCATGTCTTGTCTGA+TGG | 0.510392 | 2.3:+32478953 | MS.gene81118:CDS |
| ATTGGGACAAATGTAGCTTA+GGG | 0.511063 | 2.3:+32479612 | MS.gene81118:CDS |
| TGAGCTTGTAACATTGAATC+GGG | 0.512123 | 2.3:+32478701 | MS.gene81118:CDS |
| TTCTAGACAATCCAATGCAA+TGG | 0.513106 | 2.3:+32479282 | MS.gene81118:CDS |
| TGTGAATATCAAATTTGAGC+AGG | 0.513796 | 2.3:+32478518 | MS.gene81118:CDS |
| CCCTAGATTCAAGATGAAGT+TGG | 0.516774 | 2.3:+32479658 | MS.gene81118:CDS |
| CACAGCAAGAGAAAAGAGAA+AGG | 0.519365 | 2.3:+32478428 | MS.gene81118:CDS |
| GCCCGCATGATTATTCTACA+TGG | 0.519526 | 2.3:+32478612 | MS.gene81118:CDS |
| CCTGTGAACACACCAAAGCT+TGG | 0.519869 | 2.3:-32480156 | None:intergenic |
| GGATTGGATACGGAGTGAAC+TGG | 0.520657 | 2.3:+32480177 | MS.gene81118:CDS |
| ACATGGATATCCATTGGCTA+TGG | 0.521001 | 2.3:+32478629 | MS.gene81118:CDS |
| GAGATGCTGGATAAATTGCC+CGG | 0.521718 | 2.3:+32478774 | MS.gene81118:CDS |
| GAGAGCTCCAATCACGATCA+AGG | 0.522817 | 2.3:-32480117 | None:intergenic |
| CAATGTTACAAGCTCAAACA+AGG | 0.523973 | 2.3:-32478694 | None:intergenic |
| TAAAAGTTCACAAACCGTAC+TGG | 0.524644 | 2.3:+32479205 | MS.gene81118:CDS |
| GACTCCAGGGATAGACTGAT+GGG | 0.525684 | 2.3:+32479866 | MS.gene81118:CDS |
| GCTGATGTTTGGACTGCAAA+TGG | 0.534139 | 2.3:+32478813 | MS.gene81118:CDS |
| TTGAGATTTATGATAAAGAG+AGG | 0.535373 | 2.3:+32478739 | MS.gene81118:CDS |
| TCTTGTGGCAATGTTATCAC+AGG | 0.536248 | 2.3:-32479027 | None:intergenic |
| AAACCCCATCAGTCTATCCC+TGG | 0.539727 | 2.3:-32479870 | None:intergenic |
| GGACAAATGTAGCTTAGGGT+TGG | 0.542940 | 2.3:+32479616 | MS.gene81118:CDS |
| TTTAGGAATCCCAATGTCAA+AGG | 0.545273 | 2.3:+32480057 | MS.gene81118:CDS |
| GGACTCCAGGGATAGACTGA+TGG | 0.545841 | 2.3:+32479865 | MS.gene81118:CDS |
| ATGGATAAGACGGGATACCT+TGG | 0.546401 | 2.3:-32480019 | None:intergenic |
| CTGTGATTGTCAAATCTAGT+AGG | 0.548380 | 2.3:+32478229 | MS.gene81118:CDS |
| GGTGGAAAGTTCACACTCCA+AGG | 0.552820 | 2.3:+32480002 | MS.gene81118:CDS |
| TCGAGCCATCATGGATAAGA+CGG | 0.554126 | 2.3:-32480029 | None:intergenic |
| AAATCATGGAGAACAACTTA+CGG | 0.554879 | 2.3:-32478989 | None:intergenic |
| TCGCATCGAAGAGGTCTTCG+AGG | 0.556471 | 2.3:+32479724 | MS.gene81118:CDS |
| ATGTTGAAATCAACATTTCG+CGG | 0.557150 | 2.3:-32479971 | None:intergenic |
| CTGGAGTCCTTTGCAGACCA+TGG | 0.571247 | 2.3:-32479851 | None:intergenic |
| GTCAAAGGTTGCACCAGAGT+TGG | 0.572601 | 2.3:+32480072 | MS.gene81118:CDS |
| CGAGCCATCATGGATAAGAC+GGG | 0.573220 | 2.3:-32480028 | None:intergenic |
| TGTGTTCACAGGATTGGATA+CGG | 0.575857 | 2.3:+32480167 | MS.gene81118:CDS |
| CTCATGACCAAGGATTGGCC+TGG | 0.577466 | 2.3:+32479795 | MS.gene81118:CDS |
| AAAGATGAATCTGTCAACAC+TGG | 0.578653 | 2.3:+32478549 | MS.gene81118:CDS |
| CATGAAACTTCTCAAGGTGA+AGG | 0.579872 | 2.3:+32479905 | MS.gene81118:CDS |
| TTCCTCCATGAAACTTCTCA+AGG | 0.580079 | 2.3:+32479899 | MS.gene81118:CDS |
| TTGGCTATGGTTGAACATGT+TGG | 0.582446 | 2.3:+32478642 | MS.gene81118:CDS |
| AGACATGACATTAAGAACAT+TGG | 0.584847 | 2.3:-32479120 | None:intergenic |
| TATTATTATCCACAAATCTA+CGG | 0.585342 | 2.3:+32479686 | MS.gene81118:CDS |
| AAATTACATAGATGAATCAT+GGG | 0.586888 | 2.3:+32478863 | MS.gene81118:CDS |
| GTATCCCGTCTTATCCATGA+TGG | 0.590250 | 2.3:+32480024 | MS.gene81118:CDS |
| ACTGGCAAAGTTCAATGAGA+TGG | 0.590664 | 2.3:+32479223 | MS.gene81118:CDS |
| TCTCTTTATCTGAAGTAGAG+TGG | 0.591358 | 2.3:+32479390 | MS.gene81118:CDS |
| TCCATGTAGAATAATCATGC+GGG | 0.592539 | 2.3:-32478613 | None:intergenic |
| AGAGGTCTTCGAGGGCGTGA+AGG | 0.596363 | 2.3:+32479733 | MS.gene81118:CDS |
| ATTTAATCAGGTGTCAGAGA+AGG | 0.597105 | 2.3:+32478379 | MS.gene81118:CDS |
| CTGTAGTTAAATGCCAACTC+TGG | 0.599166 | 2.3:-32480085 | None:intergenic |
| AAGTCTCTCGCCAATTCTTG+TGG | 0.600075 | 2.3:-32479042 | None:intergenic |
| CTGAGTGGATCAAGCACGAG+TGG | 0.603262 | 2.3:+32478336 | MS.gene81118:CDS |
| ACATGTTCAACCATAGCCAA+TGG | 0.611390 | 2.3:-32478639 | None:intergenic |
| GTCCTTTGCAGACCATGGCA+AGG | 0.615769 | 2.3:-32479846 | None:intergenic |
| ATAGCAACTTTGATCAAAGA+CGG | 0.615896 | 2.3:+32478574 | MS.gene81118:CDS |
| GAGTTGGCATTTAACTACAG+TGG | 0.616679 | 2.3:+32480088 | MS.gene81118:CDS |
| AAAAGGTGATACATGTGTGG+CGG | 0.622814 | 2.3:+32478290 | MS.gene81118:CDS |
| CGCATCGAAGAGGTCTTCGA+GGG | 0.623879 | 2.3:+32479725 | MS.gene81118:CDS |
| ATGGTCTGCAAAGGACTCCA+GGG | 0.624417 | 2.3:+32479853 | MS.gene81118:CDS |
| CCATTAGCTTCTCATGACCA+AGG | 0.624675 | 2.3:+32479785 | MS.gene81118:CDS |
| GTCAGCAAGTCGCATCGAAG+AGG | 0.626220 | 2.3:+32479715 | MS.gene81118:CDS |
| AGTATGTCTCCAGTATGAGA+AGG | 0.632973 | 2.3:-32478924 | None:intergenic |
| ATCCATGTAGAATAATCATG+CGG | 0.637192 | 2.3:-32478614 | None:intergenic |
| AATCATGGGAGTTAAGAAGG+AGG | 0.642664 | 2.3:+32478877 | MS.gene81118:CDS |
| CAAGAGAAAAGAGAAAGGAA+GGG | 0.650362 | 2.3:+32478433 | MS.gene81118:CDS |
| CACCTTGAGAAGTTTCATGG+AGG | 0.652759 | 2.3:-32479901 | None:intergenic |
| AATGTTACAAGCTCAAACAA+GGG | 0.660082 | 2.3:-32478693 | None:intergenic |
| TGATGTATTGTGCTAGACCA+TGG | 0.665733 | 2.3:-32478407 | None:intergenic |
| ACCACCAAAGAACTGATGCA+CGG | 0.669671 | 2.3:-32479563 | None:intergenic |
| ACTTAACATCACAGAGCTCG+GGG | 0.706698 | 2.3:-32479508 | None:intergenic |
| TGTCAGAGAAGGTCTAACCA+TGG | 0.715779 | 2.3:+32478390 | MS.gene81118:CDS |
| ACTCCAGGGATAGACTGATG+GGG | 0.731702 | 2.3:+32479867 | MS.gene81118:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTGATTTCAACATATTAAAT+TGG | + | chr2.3:32479981-32480000 | MS.gene81118:CDS | 15.0% |
| !! | AAATTACATAGATGAATCAT+GGG | + | chr2.3:32478863-32478882 | MS.gene81118:CDS | 20.0% |
| !! | AATAGGTTTCTATATTGTAA+TGG | + | chr2.3:32479071-32479090 | MS.gene81118:CDS | 20.0% |
| !! | ATTTCAACATATTAAATTGG+TGG | + | chr2.3:32479984-32480003 | MS.gene81118:CDS | 20.0% |
| !! | TATTATTATCCACAAATCTA+CGG | + | chr2.3:32479686-32479705 | MS.gene81118:CDS | 20.0% |
| !! | TTCAGATAAAGAGATATTAT+AGG | - | chr2.3:32479384-32479403 | None:intergenic | 20.0% |
| !!! | AGGTTATAAATATTTTCACT+AGG | + | chr2.3:32479456-32479475 | MS.gene81118:CDS | 20.0% |
| !!! | GATTTTGATAGGATTAAAAA+AGG | + | chr2.3:32478273-32478292 | MS.gene81118:CDS | 20.0% |
| !!! | GGAGGATATTAAATTTTATA+AGG | + | chr2.3:32478895-32478914 | MS.gene81118:CDS | 20.0% |
| ! | ATCAGATCTAGATAAGTATT+TGG | + | chr2.3:32479934-32479953 | MS.gene81118:CDS | 25.0% |
| ! | CAAATTACATAGATGAATCA+TGG | + | chr2.3:32478862-32478881 | MS.gene81118:CDS | 25.0% |
| ! | TTGAGATTTATGATAAAGAG+AGG | + | chr2.3:32478739-32478758 | MS.gene81118:CDS | 25.0% |
| !! | TAAGTTGCATTTTATTGAGT+GGG | + | chr2.3:32479526-32479545 | MS.gene81118:CDS | 25.0% |
| !!! | TTAAGTTGCATTTTATTGAG+TGG | + | chr2.3:32479525-32479544 | MS.gene81118:CDS | 25.0% |
| !!! | TTGTATGGAATGATTTTGAT+AGG | + | chr2.3:32478262-32478281 | MS.gene81118:CDS | 25.0% |
| AAATCATGGAGAACAACTTA+CGG | - | chr2.3:32478992-32479011 | None:intergenic | 30.0% | |
| AATGTTACAAGCTCAAACAA+GGG | - | chr2.3:32478696-32478715 | None:intergenic | 30.0% | |
| AGACATGACATTAAGAACAT+TGG | - | chr2.3:32479123-32479142 | None:intergenic | 30.0% | |
| ATAGCAACTTTGATCAAAGA+CGG | + | chr2.3:32478574-32478593 | MS.gene81118:CDS | 30.0% | |
| ATCCATGTAGAATAATCATG+CGG | - | chr2.3:32478617-32478636 | None:intergenic | 30.0% | |
| ATCTAAGGAACCATTTAATC+AGG | + | chr2.3:32478367-32478386 | MS.gene81118:CDS | 30.0% | |
| ATGTTGAAATCAACATTTCG+CGG | - | chr2.3:32479974-32479993 | None:intergenic | 30.0% | |
| CATTGTAAAAAGAAACTGAG+TGG | + | chr2.3:32478321-32478340 | MS.gene81118:CDS | 30.0% | |
| CTAACTGTATCATCTTTGTT+TGG | - | chr2.3:32478495-32478514 | None:intergenic | 30.0% | |
| CTTTACAACGAACATTCTAT+AGG | + | chr2.3:32479758-32479777 | MS.gene81118:CDS | 30.0% | |
| TAAAAAAGGTGATACATGTG+TGG | + | chr2.3:32478287-32478306 | MS.gene81118:CDS | 30.0% | |
| TATGTAGAATTCCATTGCAT+TGG | - | chr2.3:32479296-32479315 | None:intergenic | 30.0% | |
| TATTCTACATGGATATCCAT+TGG | + | chr2.3:32478623-32478642 | MS.gene81118:CDS | 30.0% | |
| TGCAATTACGAATTTCAGTT+TGG | + | chr2.3:32478461-32478480 | MS.gene81118:CDS | 30.0% | |
| TGTGAATATCAAATTTGAGC+AGG | + | chr2.3:32478518-32478537 | MS.gene81118:CDS | 30.0% | |
| TTGAGCTTGTAACATTGAAT+CGG | + | chr2.3:32478700-32478719 | MS.gene81118:CDS | 30.0% | |
| ! | AAGTTGCATTTTATTGAGTG+GGG | + | chr2.3:32479527-32479546 | MS.gene81118:CDS | 30.0% |
| ! | TAAGTTGTTCTCCATGATTT+TGG | + | chr2.3:32478992-32479011 | MS.gene81118:CDS | 30.0% |
| AAAGATGAATCTGTCAACAC+TGG | + | chr2.3:32478549-32478568 | MS.gene81118:CDS | 35.0% | |
| AAGCAAGTTTGACGAGTATT+GGG | + | chr2.3:32479595-32479614 | MS.gene81118:CDS | 35.0% | |
| AATGAGATGGCTAAAGAAGT+TGG | + | chr2.3:32479236-32479255 | MS.gene81118:CDS | 35.0% | |
| ACCAACTTCATCTTGAATCT+AGG | - | chr2.3:32479662-32479681 | None:intergenic | 35.0% | |
| ATGAATCATGGGAGTTAAGA+AGG | + | chr2.3:32478874-32478893 | MS.gene81118:CDS | 35.0% | |
| ATGAGATGGCTAAAGAAGTT+GGG | + | chr2.3:32479237-32479256 | MS.gene81118:CDS | 35.0% | |
| ATTGGGACAAATGTAGCTTA+GGG | + | chr2.3:32479612-32479631 | MS.gene81118:CDS | 35.0% | |
| ATTTAATCAGGTGTCAGAGA+AGG | + | chr2.3:32478379-32478398 | MS.gene81118:CDS | 35.0% | |
| CAAGAGAAAAGAGAAAGGAA+GGG | + | chr2.3:32478433-32478452 | MS.gene81118:CDS | 35.0% | |
| CAATGTTACAAGCTCAAACA+AGG | - | chr2.3:32478697-32478716 | None:intergenic | 35.0% | |
| CCAACTTCATCTTGAATCTA+GGG | - | chr2.3:32479661-32479680 | None:intergenic | 35.0% | |
| CTGTGATTGTCAAATCTAGT+AGG | + | chr2.3:32478229-32478248 | MS.gene81118:CDS | 35.0% | |
| CTTTAAGTAGCTGGTAACTA+TGG | - | chr2.3:32479426-32479445 | None:intergenic | 35.0% | |
| GAAAAAGATGAATGAGATGC+TGG | + | chr2.3:32478761-32478780 | MS.gene81118:CDS | 35.0% | |
| GAGTAGTTTCACGAATCTTA+TGG | - | chr2.3:32479178-32479197 | None:intergenic | 35.0% | |
| GATAACATTGCCACAAGAAT+TGG | + | chr2.3:32479032-32479051 | MS.gene81118:CDS | 35.0% | |
| TAAAACATTTCGAGCCATCA+TGG | - | chr2.3:32480041-32480060 | None:intergenic | 35.0% | |
| TAAAAGTTCACAAACCGTAC+TGG | + | chr2.3:32479205-32479224 | MS.gene81118:CDS | 35.0% | |
| TATTGGGACAAATGTAGCTT+AGG | + | chr2.3:32479611-32479630 | MS.gene81118:CDS | 35.0% | |
| TCCATGTAGAATAATCATGC+GGG | - | chr2.3:32478616-32478635 | None:intergenic | 35.0% | |
| TGAGCTTGTAACATTGAATC+GGG | + | chr2.3:32478701-32478720 | MS.gene81118:CDS | 35.0% | |
| TTCTAGACAATCCAATGCAA+TGG | + | chr2.3:32479282-32479301 | MS.gene81118:CDS | 35.0% | |
| TTCTCTGACACCTGATTAAA+TGG | - | chr2.3:32478380-32478399 | None:intergenic | 35.0% | |
| TTTAGGAATCCCAATGTCAA+AGG | + | chr2.3:32480057-32480076 | MS.gene81118:CDS | 35.0% | |
| ! | ATGATGGCTCGAAATGTTTT+AGG | + | chr2.3:32480040-32480059 | MS.gene81118:CDS | 35.0% |
| ! | CTACTTAAAGCTTTTTGTCG+AGG | + | chr2.3:32479436-32479455 | MS.gene81118:CDS | 35.0% |
| ! | CTCTTTATCTGAAGTAGAGT+GGG | + | chr2.3:32479391-32479410 | MS.gene81118:CDS | 35.0% |
| ! | GTAGGTTGAAATCAGTTGTA+TGG | + | chr2.3:32478247-32478266 | MS.gene81118:CDS | 35.0% |
| ! | TCTCTTTATCTGAAGTAGAG+TGG | + | chr2.3:32479390-32479409 | MS.gene81118:CDS | 35.0% |
| ! | TTGTTCTCCATGATTTTGGA+CGG | + | chr2.3:32478996-32479015 | MS.gene81118:CDS | 35.0% |
| !! | GACAAAAAGCTTTAAGTAGC+TGG | - | chr2.3:32479435-32479454 | None:intergenic | 35.0% |
| !! | TGAAGCTGCTTTAGAATTCA+AGG | + | chr2.3:32479325-32479344 | MS.gene81118:CDS | 35.0% |
| !!! | AGCACTGATACTGATTTTTC+CGG | - | chr2.3:32478796-32478815 | None:intergenic | 35.0% |
| AAAAGGTGATACATGTGTGG+CGG | + | chr2.3:32478290-32478309 | MS.gene81118:CDS | 40.0% | |
| AACTTAACATCACAGAGCTC+GGG | - | chr2.3:32479512-32479531 | None:intergenic | 40.0% | |
| AATCATGGGAGTTAAGAAGG+AGG | + | chr2.3:32478877-32478896 | MS.gene81118:CDS | 40.0% | |
| ACATGTTCAACCATAGCCAA+TGG | - | chr2.3:32478642-32478661 | None:intergenic | 40.0% | |
| ACTGGCAAAGTTCAATGAGA+TGG | + | chr2.3:32479223-32479242 | MS.gene81118:CDS | 40.0% | |
| AGAACAACCGTCCAAAATCA+TGG | - | chr2.3:32479006-32479025 | None:intergenic | 40.0% | |
| AGGATTGATCCTTCTCATAC+TGG | + | chr2.3:32478915-32478934 | MS.gene81118:CDS | 40.0% | |
| AGTATGTCTCCAGTATGAGA+AGG | - | chr2.3:32478927-32478946 | None:intergenic | 40.0% | |
| CAACTTAACATCACAGAGCT+CGG | - | chr2.3:32479513-32479532 | None:intergenic | 40.0% | |
| CACAGCAAGAGAAAAGAGAA+AGG | + | chr2.3:32478428-32478447 | MS.gene81118:CDS | 40.0% | |
| CATGAAACTTCTCAAGGTGA+AGG | + | chr2.3:32479905-32479924 | MS.gene81118:CDS | 40.0% | |
| CCCTAGATTCAAGATGAAGT+TGG | + | chr2.3:32479658-32479677 | MS.gene81118:CDS | 40.0% | |
| CTCATTGAACTTTGCCAGTA+CGG | - | chr2.3:32479222-32479241 | None:intergenic | 40.0% | |
| CTGTAGTTAAATGCCAACTC+TGG | - | chr2.3:32480088-32480107 | None:intergenic | 40.0% | |
| CTTCACCTTGAGAAGTTTCA+TGG | - | chr2.3:32479907-32479926 | None:intergenic | 40.0% | |
| GAAGCAAGTTTGACGAGTAT+TGG | + | chr2.3:32479594-32479613 | MS.gene81118:CDS | 40.0% | |
| GAGTTGGCATTTAACTACAG+TGG | + | chr2.3:32480088-32480107 | MS.gene81118:CDS | 40.0% | |
| GCAAGAGAAAAGAGAAAGGA+AGG | + | chr2.3:32478432-32478451 | MS.gene81118:CDS | 40.0% | |
| GCGAGAGACTTATGCAAAAT+AGG | + | chr2.3:32479054-32479073 | MS.gene81118:CDS | 40.0% | |
| TCAACATTTCGCGGAAAAAG+AGG | - | chr2.3:32479965-32479984 | None:intergenic | 40.0% | |
| TCTTGTGGCAATGTTATCAC+AGG | - | chr2.3:32479030-32479049 | None:intergenic | 40.0% | |
| TGATGTATTGTGCTAGACCA+TGG | - | chr2.3:32478410-32478429 | None:intergenic | 40.0% | |
| TGATTGGAGCTCTCTTAATC+CGG | + | chr2.3:32480126-32480145 | MS.gene81118:CDS | 40.0% | |
| TGTGTTCACAGGATTGGATA+CGG | + | chr2.3:32480167-32480186 | MS.gene81118:CDS | 40.0% | |
| TTCCTCCATGAAACTTCTCA+AGG | + | chr2.3:32479899-32479918 | MS.gene81118:CDS | 40.0% | |
| TTGGCTATGGTTGAACATGT+TGG | + | chr2.3:32478642-32478661 | MS.gene81118:CDS | 40.0% | |
| ! | ACATGGATATCCATTGGCTA+TGG | + | chr2.3:32478629-32478648 | MS.gene81118:CDS | 40.0% |
| ! | TCATGTCTTGTCTGATGGAT+TGG | + | chr2.3:32478958-32478977 | MS.gene81118:CDS | 40.0% |
| ! | TGTAACATTGAATCGGGTTG+AGG | + | chr2.3:32478707-32478726 | MS.gene81118:CDS | 40.0% |
| !! | CATGTCTTGTCTGATGGATT+GGG | + | chr2.3:32478959-32478978 | MS.gene81118:CDS | 40.0% |
| !! | TCAGTATCAGTGCTGATGTT+TGG | + | chr2.3:32478802-32478821 | MS.gene81118:CDS | 40.0% |
| !!! | GCACTGATACTGATTTTTCC+GGG | - | chr2.3:32478795-32478814 | None:intergenic | 40.0% |
| AAGTCTCTCGCCAATTCTTG+TGG | - | chr2.3:32479045-32479064 | None:intergenic | 45.0% | |
| ACCACCAAAGAACTGATGCA+CGG | - | chr2.3:32479566-32479585 | None:intergenic | 45.0% | |
| ACTTAACATCACAGAGCTCG+GGG | - | chr2.3:32479511-32479530 | None:intergenic | 45.0% | |
| AGATCCGTGCATCAGTTCTT+TGG | + | chr2.3:32479559-32479578 | MS.gene81118:CDS | 45.0% | |
| AGCTGTCATGTCTTGTCTGA+TGG | + | chr2.3:32478953-32478972 | MS.gene81118:CDS | 45.0% | |
| AGCTTCTCATGACCAAGGAT+TGG | + | chr2.3:32479790-32479809 | MS.gene81118:CDS | 45.0% | |
| ATACATGTGTGGCGGTTTGT+AGG | + | chr2.3:32478298-32478317 | MS.gene81118:CDS | 45.0% | |
| ATGGATAAGACGGGATACCT+TGG | - | chr2.3:32480022-32480041 | None:intergenic | 45.0% | |
| CACCTTGAGAAGTTTCATGG+AGG | - | chr2.3:32479904-32479923 | None:intergenic | 45.0% | |
| CCTTGGTCATGAGAAGCTAA+TGG | - | chr2.3:32479788-32479807 | None:intergenic | 45.0% | |
| CGAGTGGAACATCTCATCTA+AGG | + | chr2.3:32478352-32478371 | MS.gene81118:CDS | 45.0% | |
| CTGGTGCAACCTTTGACATT+GGG | - | chr2.3:32480069-32480088 | None:intergenic | 45.0% | |
| GAAGAGTCCTTGATCGTGAT+TGG | + | chr2.3:32480110-32480129 | MS.gene81118:CDS | 45.0% | |
| GACATGCTACCGTAGATTTG+TGG | - | chr2.3:32479698-32479717 | None:intergenic | 45.0% | |
| GAGATGCTGGATAAATTGCC+CGG | + | chr2.3:32478774-32478793 | MS.gene81118:CDS | 45.0% | |
| GCCCGCATGATTATTCTACA+TGG | + | chr2.3:32478612-32478631 | MS.gene81118:CDS | 45.0% | |
| GCTGATGTTTGGACTGCAAA+TGG | + | chr2.3:32478813-32478832 | MS.gene81118:CDS | 45.0% | |
| GGACAAATGTAGCTTAGGGT+TGG | + | chr2.3:32479616-32479635 | MS.gene81118:CDS | 45.0% | |
| GTATCCCGTCTTATCCATGA+TGG | + | chr2.3:32480024-32480043 | MS.gene81118:CDS | 45.0% | |
| TCGAGCCATCATGGATAAGA+CGG | - | chr2.3:32480032-32480051 | None:intergenic | 45.0% | |
| TCTGGTGCAACCTTTGACAT+TGG | - | chr2.3:32480070-32480089 | None:intergenic | 45.0% | |
| TGTCAGAGAAGGTCTAACCA+TGG | + | chr2.3:32478390-32478409 | MS.gene81118:CDS | 45.0% | |
| ! | CCATTAGCTTCTCATGACCA+AGG | + | chr2.3:32479785-32479804 | MS.gene81118:CDS | 45.0% |
| ! | CTTTGGTGTGTTCACAGGAT+TGG | + | chr2.3:32480161-32480180 | MS.gene81118:CDS | 45.0% |
| ! | GCTACCATTTTCAACTTGCC+AGG | - | chr2.3:32479816-32479835 | None:intergenic | 45.0% |
| ! | GTCATGTCTCAGCTTGCTTT+GGG | + | chr2.3:32479134-32479153 | MS.gene81118:CDS | 45.0% |
| ! | TGTCATGTCTCAGCTTGCTT+TGG | + | chr2.3:32479133-32479152 | MS.gene81118:CDS | 45.0% |
| ! | TTGGCCTGGCAAGTTGAAAA+TGG | + | chr2.3:32479809-32479828 | MS.gene81118:CDS | 45.0% |
| AAACCCCATCAGTCTATCCC+TGG | - | chr2.3:32479873-32479892 | None:intergenic | 50.0% | |
| ACCAAAGCTTGGACAGTAGC+CGG | - | chr2.3:32480148-32480167 | None:intergenic | 50.0% | |
| ACTCCAGGGATAGACTGATG+GGG | + | chr2.3:32479867-32479886 | MS.gene81118:CDS | 50.0% | |
| ATGGTCTGCAAAGGACTCCA+GGG | + | chr2.3:32479853-32479872 | MS.gene81118:CDS | 50.0% | |
| CCTGTGAACACACCAAAGCT+TGG | - | chr2.3:32480159-32480178 | None:intergenic | 50.0% | |
| CGAGCCATCATGGATAAGAC+GGG | - | chr2.3:32480031-32480050 | None:intergenic | 50.0% | |
| GACTCCAGGGATAGACTGAT+GGG | + | chr2.3:32479866-32479885 | MS.gene81118:CDS | 50.0% | |
| GAGAGCTCCAATCACGATCA+AGG | - | chr2.3:32480120-32480139 | None:intergenic | 50.0% | |
| GCAGTTCTCTTTCCTTGCCA+TGG | + | chr2.3:32479834-32479853 | MS.gene81118:CDS | 50.0% | |
| GGATTGGATACGGAGTGAAC+TGG | + | chr2.3:32480177-32480196 | MS.gene81118:CDS | 50.0% | |
| GGTGGAAAGTTCACACTCCA+AGG | + | chr2.3:32480002-32480021 | MS.gene81118:CDS | 50.0% | |
| GTCAAAGGTTGCACCAGAGT+TGG | + | chr2.3:32480072-32480091 | MS.gene81118:CDS | 50.0% | |
| TCCGTGCATCAGTTCTTTGG+TGG | + | chr2.3:32479562-32479581 | MS.gene81118:CDS | 50.0% | |
| TTCCTTGCCATGGTCTGCAA+AGG | + | chr2.3:32479844-32479863 | MS.gene81118:CDS | 50.0% | |
| ! | CCAAGCTTTGGTGTGTTCAC+AGG | + | chr2.3:32480156-32480175 | MS.gene81118:CDS | 50.0% |
| CAACTTGCCAGGCCAATCCT+TGG | - | chr2.3:32479805-32479824 | None:intergenic | 55.0% | |
| CAAGCTCAAACAAGGGCTGC+AGG | - | chr2.3:32478689-32478708 | None:intergenic | 55.0% | |
| CATGGTCTGCAAAGGACTCC+AGG | + | chr2.3:32479852-32479871 | MS.gene81118:CDS | 55.0% | |
| CGCATCGAAGAGGTCTTCGA+GGG | + | chr2.3:32479725-32479744 | MS.gene81118:CDS | 55.0% | |
| CTGAGTGGATCAAGCACGAG+TGG | + | chr2.3:32478336-32478355 | MS.gene81118:CDS | 55.0% | |
| CTGGAGTCCTTTGCAGACCA+TGG | - | chr2.3:32479854-32479873 | None:intergenic | 55.0% | |
| GGACTCCAGGGATAGACTGA+TGG | + | chr2.3:32479865-32479884 | MS.gene81118:CDS | 55.0% | |
| GTCAGCAAGTCGCATCGAAG+AGG | + | chr2.3:32479715-32479734 | MS.gene81118:CDS | 55.0% | |
| GTCCTTTGCAGACCATGGCA+AGG | - | chr2.3:32479849-32479868 | None:intergenic | 55.0% | |
| TCCGGCTACTGTCCAAGCTT+TGG | + | chr2.3:32480144-32480163 | MS.gene81118:CDS | 55.0% | |
| TCGCATCGAAGAGGTCTTCG+AGG | + | chr2.3:32479724-32479743 | MS.gene81118:CDS | 55.0% | |
| !! | CTCATGACCAAGGATTGGCC+TGG | + | chr2.3:32479795-32479814 | MS.gene81118:CDS | 55.0% |
| ! | AGAGGTCTTCGAGGGCGTGA+AGG | + | chr2.3:32479733-32479752 | MS.gene81118:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.3 | gene | 32478213 | 32480207 | 32478213 | ID=MS.gene81118 |
| chr2.3 | mRNA | 32478213 | 32480207 | 32478213 | ID=MS.gene81118.t1;Parent=MS.gene81118 |
| chr2.3 | exon | 32478213 | 32480207 | 32478213 | ID=MS.gene81118.t1.exon1;Parent=MS.gene81118.t1 |
| chr2.3 | CDS | 32478213 | 32480207 | 32478213 | ID=cds.MS.gene81118.t1;Parent=MS.gene81118.t1 |
| Gene Sequence |
| Protein sequence |
