AlfalfaGEDB | MS.gene83166

M. sativa cultivar XinJiangDaYe / MS.gene83166

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene83166.t1	XP_003620613.1	88.1	84	10	0	80	163	554	637	5.90E-31	144.1

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene83166.t1	G7KPE2	88.1	84	10	0	80	163	554	637	4.3e-31	144.1

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049701	MS.gene83166	0.804783	1.83E-49	-1.69E-46
MS.gene049853	MS.gene83166	0.834956	2.22E-56	-1.69E-46
MS.gene052447	MS.gene83166	0.808325	3.27E-50	-1.69E-46
MS.gene054174	MS.gene83166	0.832503	9.11E-56	-1.69E-46
MS.gene054175	MS.gene83166	0.832605	8.59E-56	-1.69E-46
MS.gene054484	MS.gene83166	0.833158	6.26E-56	-1.69E-46
MS.gene055017	MS.gene83166	0.800601	1.34E-48	-1.69E-46
MS.gene055058	MS.gene83166	0.80742	5.10E-50	-1.69E-46
MS.gene058515	MS.gene83166	0.846273	2.41E-59	-1.69E-46
MS.gene059276	MS.gene83166	0.800922	1.15E-48	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene83166.t1	MTR_6g087760	88.095	84	10	0	80	163	554	637	1.81e-41	147
MS.gene83166.t1	MTR_6g034670	63.542	96	29	2	1	96	1	90	3.96e-31	108
MS.gene83166.t1	MTR_2g066850	73.333	60	16	0	5	64	130	189	1.32e-20	88.2
MS.gene83166.t1	MTR_1g036590	61.905	63	20	1	1	59	34	96	2.89e-13	66.6

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 26 sgRNAs with CRISPR-Local

Find 28 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACAGAAGATCTCATCGTGG+AGG	0.674719	8.2:-57670784	MS.gene83166:CDS
AAGAGGAGATCGACGCTGCT+TGG	0.474561	8.2:-57671016	MS.gene83166:CDS
AAGTTTAACTGACACCGGTG+AGG	0.700035	8.2:+57670631	None:intergenic
AATTCTTATGCCGTTGAAAG+AGG	0.471956	8.2:-57671033	MS.gene83166:CDS
AATTGATACCATCCCTGCTG+AGG	0.644195	8.2:-57670664	MS.gene83166:CDS
ACAAGCTTCCTCAGCAGGGA+TGG	0.565314	8.2:+57670656	None:intergenic
ACTAGACATAATTGCGAAGA+GGG	0.530232	8.2:-57670735	MS.gene83166:CDS
ACTTTGTGATGGAGAAAATA+GGG	0.355897	8.2:-57670895	MS.gene83166:CDS
AGGTCACAAGCTTCCTCAGC+AGG	0.444090	8.2:+57670651	None:intergenic
AGTAACAGAAGATCTCATCG+TGG	0.778770	8.2:-57670787	MS.gene83166:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CATCATCAACTAAAGAATCT+TGG	+	chr8.2:57671030-57671049	None:intergenic	30.0%
AATTCTTATGCCGTTGAAAG+AGG	-	chr8.2:57670706-57670725	MS.gene83166:CDS	35.0%
ACTAGACATAATTGCGAAGA+GGG	-	chr8.2:57671004-57671023	MS.gene83166:CDS	35.0%
CTCAATACTAACAACAGGTT+CGG	+	chr8.2:57670801-57670820	None:intergenic	35.0%
GTCTTCTCAATACTAACAAC+AGG	+	chr8.2:57670806-57670825	None:intergenic	35.0%
AGTAACAGAAGATCTCATCG+TGG	-	chr8.2:57670952-57670971	MS.gene83166:CDS	40.0%
CACATGGTTTCACTTTGTGA+TGG	-	chr8.2:57670833-57670852	MS.gene83166:CDS	40.0%
GACTAGACATAATTGCGAAG+AGG	-	chr8.2:57671003-57671022	MS.gene83166:CDS	40.0%
AACAGAAGATCTCATCGTGG+AGG	-	chr8.2:57670955-57670974	MS.gene83166:CDS	45.0%
AATTGATACCATCCCTGCTG+AGG	-	chr8.2:57671075-57671094	MS.gene83166:CDS	45.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.2	gene	57670635	57671126	57670635	ID=MS.gene83166
chr8.2	mRNA	57670635	57671126	57670635	ID=MS.gene83166.t1;Parent=MS.gene83166
chr8.2	exon	57670635	57671126	57670635	ID=MS.gene83166.t1.exon1;Parent=MS.gene83166.t1
chr8.2	CDS	57670635	57671126	57670635	ID=cds.MS.gene83166.t1;Parent=MS.gene83166.t1

Gene Sequence

>MS.gene83166

ATGGCAGATAACTCGCGTAAGACGGTTAAAGATATTTTTAAACACTCTGTTTTGATAACGTATATTATAAGAATTCTTATGCCGTTGAAAGAGGAGATCGACGCTGCTTGGATGACCCAAGCGTTTTCGACGTCTGTGGAATCGGTTGAAGAACATTCTGTCACCGAACCTGTTGTTAGTATTGAGAAGACTGGTGAGCACATGGTTTCACTTTGTGATGGAGAAAATAGGGATTATGAAAAATTAAAGCAAGAAGAAGGGATGAGTATCGATGTTTCTTGTAAAGATGATTGTGCTGAGATTAAAATAATCACTACAGTAACAGAAGATCTCATCGTGGAGGATGTAGTAGACACCTATGCAAATAAGACTAGACATAATTGCGAAGAGGGCCAAGATTCTTTAGTTGATGATGTTTTGACGCTAAATAATGAACGTGAAATTGATACCATCCCTGCTGAGGAAGCTTGTGACCTCACCGGTGTCAGTTAA

Protein sequence

>MS.gene83166.t1

MADNSRKTVKDIFKHSVLITYIIRILMPLKEEIDAAWMTQAFSTSVESVEEHSVTEPVVSIEKTGEHMVSLCDGENRDYEKLKQEEGMSIDVSCKDDCAEIKIITTVTEDLIVEDVVDTYANKTRHNCEEGQDSLVDDVLTLNNEREIDTIPAEEACDLTGVS