Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83187.t1 | XP_013451092.1 | 98.5 | 262 | 4 | 0 | 1 | 262 | 41 | 302 | 3.60E-139 | 504.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83187.t1 | Q8BGF9 | 32.9 | 277 | 149 | 8 | 1 | 262 | 45 | 299 | 6.9e-30 | 132.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83187.t1 | A0A072U628 | 98.5 | 262 | 4 | 0 | 1 | 262 | 41 | 302 | 2.6e-139 | 504.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050317 | MS.gene83187 | 0.81762 | 3.00E-52 | -1.69E-46 |
| MS.gene050623 | MS.gene83187 | -0.82923 | 5.78E-55 | -1.69E-46 |
| MS.gene050762 | MS.gene83187 | 0.805819 | 1.11E-49 | -1.69E-46 |
| MS.gene050763 | MS.gene83187 | 0.807037 | 6.15E-50 | -1.69E-46 |
| MS.gene051245 | MS.gene83187 | 0.833618 | 4.81E-56 | -1.69E-46 |
| MS.gene052856 | MS.gene83187 | 0.804694 | 1.91E-49 | -1.69E-46 |
| MS.gene056400 | MS.gene83187 | 0.802039 | 6.78E-49 | -1.69E-46 |
| MS.gene057057 | MS.gene83187 | 0.802043 | 6.77E-49 | -1.69E-46 |
| MS.gene057452 | MS.gene83187 | -0.802422 | 5.65E-49 | -1.69E-46 |
| MS.gene058182 | MS.gene83187 | 0.846828 | 1.70E-59 | -1.69E-46 |
| MS.gene058238 | MS.gene83187 | 0.836533 | 8.85E-57 | -1.69E-46 |
| MS.gene058399 | MS.gene83187 | 0.814978 | 1.17E-51 | -1.69E-46 |
| MS.gene060084 | MS.gene83187 | 0.838876 | 2.22E-57 | -1.69E-46 |
| MS.gene060297 | MS.gene83187 | 0.833767 | 4.41E-56 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83187.t1 | MTR_6g015860 | 98.473 | 262 | 4 | 0 | 1 | 262 | 41 | 302 | 0.0 | 522 |
| MS.gene83187.t1 | MTR_6g015860 | 27.632 | 152 | 100 | 3 | 94 | 242 | 33 | 177 | 3.25e-13 | 68.6 |
| MS.gene83187.t1 | MTR_7g015870 | 77.863 | 262 | 58 | 0 | 1 | 262 | 49 | 310 | 1.94e-153 | 430 |
| MS.gene83187.t1 | MTR_7g015870 | 77.863 | 262 | 58 | 0 | 1 | 262 | 45 | 306 | 6.82e-153 | 429 |
| MS.gene83187.t1 | MTR_2g032610 | 45.113 | 266 | 139 | 3 | 1 | 262 | 53 | 315 | 2.59e-82 | 249 |
| MS.gene83187.t1 | MTR_8g019480 | 43.554 | 287 | 132 | 7 | 2 | 262 | 58 | 340 | 3.56e-67 | 212 |
| MS.gene83187.t1 | MTR_3g104810 | 39.510 | 286 | 145 | 5 | 2 | 262 | 57 | 339 | 3.87e-60 | 194 |
| MS.gene83187.t1 | MTR_5g073040 | 29.167 | 240 | 145 | 6 | 12 | 246 | 75 | 294 | 4.61e-25 | 101 |
| MS.gene83187.t1 | MTR_1g097890 | 31.839 | 223 | 126 | 8 | 26 | 246 | 86 | 284 | 2.49e-23 | 97.1 |
| MS.gene83187.t1 | MTR_6g034515 | 25.185 | 270 | 167 | 6 | 1 | 260 | 91 | 335 | 5.52e-22 | 94.0 |
| MS.gene83187.t1 | MTR_3g107510 | 29.528 | 254 | 156 | 7 | 11 | 260 | 153 | 387 | 2.61e-20 | 89.7 |
| MS.gene83187.t1 | MTR_3g107510 | 26.500 | 200 | 129 | 7 | 65 | 262 | 108 | 291 | 7.33e-12 | 65.1 |
| MS.gene83187.t1 | MTR_8g098240 | 27.344 | 256 | 160 | 5 | 10 | 262 | 351 | 583 | 2.86e-20 | 90.1 |
| MS.gene83187.t1 | MTR_8g098240 | 29.677 | 155 | 97 | 4 | 1 | 154 | 437 | 580 | 8.35e-11 | 62.4 |
| MS.gene83187.t1 | MTR_8g092080 | 30.000 | 220 | 130 | 7 | 26 | 244 | 87 | 283 | 6.79e-18 | 82.0 |
| MS.gene83187.t1 | MTR_1g012030 | 28.016 | 257 | 162 | 7 | 8 | 260 | 167 | 404 | 7.94e-18 | 82.8 |
| MS.gene83187.t1 | MTR_1g012030 | 28.261 | 184 | 117 | 6 | 79 | 262 | 140 | 308 | 5.80e-13 | 68.6 |
| MS.gene83187.t1 | MTR_7g109135 | 29.518 | 166 | 101 | 3 | 11 | 170 | 61 | 216 | 2.41e-16 | 75.9 |
| MS.gene83187.t1 | MTR_4g012850 | 25.391 | 256 | 169 | 10 | 12 | 261 | 48 | 287 | 2.41e-16 | 77.4 |
| MS.gene83187.t1 | MTR_4g012850 | 26.923 | 182 | 111 | 5 | 65 | 242 | 7 | 170 | 1.96e-11 | 63.5 |
| MS.gene83187.t1 | MTR_2g102010 | 24.060 | 266 | 182 | 6 | 1 | 260 | 37 | 288 | 3.02e-16 | 77.0 |
| MS.gene83187.t1 | MTR_7g109135 | 29.167 | 168 | 103 | 3 | 11 | 172 | 82 | 239 | 5.01e-16 | 75.5 |
| MS.gene83187.t1 | MTR_4g088545 | 25.000 | 204 | 135 | 5 | 67 | 262 | 1 | 194 | 6.21e-16 | 75.5 |
| MS.gene83187.t1 | MTR_7g109135 | 29.167 | 168 | 103 | 3 | 11 | 172 | 160 | 317 | 8.94e-16 | 75.9 |
| MS.gene83187.t1 | MTR_7g109135 | 23.016 | 252 | 172 | 9 | 17 | 262 | 67 | 302 | 7.18e-12 | 64.7 |
| MS.gene83187.t1 | MTR_7g109135 | 29.167 | 168 | 103 | 3 | 11 | 172 | 153 | 310 | 9.93e-16 | 75.9 |
| MS.gene83187.t1 | MTR_4g088545 | 25.000 | 204 | 135 | 5 | 67 | 262 | 1 | 194 | 1.09e-15 | 75.1 |
| MS.gene83187.t1 | MTR_4g088545 | 25.000 | 204 | 135 | 5 | 67 | 262 | 1 | 194 | 1.98e-15 | 74.7 |
| MS.gene83187.t1 | MTR_4g114320 | 25.000 | 252 | 159 | 9 | 16 | 260 | 160 | 388 | 4.16e-15 | 74.7 |
| MS.gene83187.t1 | MTR_4g114320 | 27.174 | 184 | 120 | 5 | 79 | 262 | 124 | 293 | 2.59e-13 | 69.3 |
| MS.gene83187.t1 | MTR_7g064980 | 22.222 | 270 | 189 | 4 | 1 | 262 | 54 | 310 | 1.27e-14 | 72.8 |
| MS.gene83187.t1 | MTR_8g027975 | 23.759 | 282 | 184 | 5 | 1 | 260 | 75 | 347 | 2.39e-14 | 72.4 |
| MS.gene83187.t1 | MTR_5g009500 | 25.000 | 272 | 167 | 7 | 1 | 248 | 62 | 320 | 3.00e-14 | 72.0 |
| MS.gene83187.t1 | MTR_1g087840 | 28.125 | 160 | 111 | 1 | 11 | 170 | 157 | 312 | 3.18e-14 | 71.6 |
| MS.gene83187.t1 | MTR_5g055410 | 29.444 | 180 | 100 | 6 | 11 | 180 | 156 | 318 | 5.77e-14 | 71.2 |
| MS.gene83187.t1 | MTR_5g055410 | 24.506 | 253 | 170 | 7 | 17 | 262 | 63 | 301 | 2.21e-11 | 63.5 |
| MS.gene83187.t1 | MTR_4g119770 | 21.622 | 259 | 185 | 4 | 14 | 260 | 67 | 319 | 6.17e-14 | 70.9 |
| MS.gene83187.t1 | MTR_2g436930 | 21.839 | 261 | 182 | 5 | 14 | 260 | 66 | 318 | 8.08e-14 | 70.5 |
| MS.gene83187.t1 | MTR_7g084400 | 30.000 | 190 | 115 | 5 | 75 | 262 | 214 | 387 | 3.32e-13 | 69.3 |
| MS.gene83187.t1 | MTR_7g084400 | 23.137 | 255 | 166 | 8 | 14 | 260 | 247 | 479 | 1.49e-11 | 64.3 |
| MS.gene83187.t1 | MTR_7g084400 | 30.000 | 190 | 115 | 5 | 75 | 262 | 208 | 381 | 3.50e-13 | 68.9 |
| MS.gene83187.t1 | MTR_3g025800 | 25.177 | 282 | 164 | 9 | 10 | 262 | 64 | 327 | 3.65e-13 | 68.9 |
| MS.gene83187.t1 | MTR_3g098460 | 25.581 | 258 | 173 | 6 | 7 | 260 | 232 | 474 | 5.03e-13 | 68.9 |
| MS.gene83187.t1 | MTR_8g066975 | 27.132 | 258 | 162 | 8 | 13 | 260 | 49 | 290 | 1.08e-12 | 67.0 |
| MS.gene83187.t1 | MTR_4g057850 | 25.833 | 240 | 149 | 9 | 20 | 248 | 64 | 285 | 1.43e-12 | 66.6 |
| MS.gene83187.t1 | MTR_5g030530 | 25.969 | 258 | 165 | 9 | 13 | 260 | 49 | 290 | 2.00e-12 | 66.2 |
| MS.gene83187.t1 | MTR_8g096050 | 23.864 | 264 | 174 | 8 | 7 | 262 | 254 | 498 | 1.31e-11 | 64.7 |
| MS.gene83187.t1 | MTR_6g091800 | 24.194 | 248 | 154 | 7 | 17 | 248 | 59 | 288 | 2.70e-11 | 63.2 |
| MS.gene83187.t1 | MTR_3g104600 | 27.972 | 143 | 91 | 3 | 16 | 154 | 188 | 322 | 6.08e-11 | 62.0 |
| MS.gene83187.t1 | MTR_1g088995 | 26.087 | 184 | 102 | 2 | 88 | 260 | 43 | 203 | 6.71e-11 | 61.2 |
| MS.gene83187.t1 | MTR_1g088995 | 26.087 | 184 | 102 | 2 | 88 | 260 | 43 | 203 | 6.71e-11 | 62.0 |
| MS.gene83187.t1 | MTR_4g119770 | 26.108 | 203 | 124 | 5 | 61 | 248 | 1 | 192 | 7.99e-11 | 61.2 |
| MS.gene83187.t1 | MTR_7g068340 | 26.250 | 240 | 142 | 10 | 11 | 244 | 124 | 334 | 9.07e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83187.t1 | AT5G15640 | 75.379 | 264 | 63 | 2 | 1 | 262 | 52 | 315 | 1.60e-143 | 405 |
| MS.gene83187.t1 | AT5G15640 | 75.379 | 264 | 63 | 2 | 1 | 262 | 45 | 308 | 1.96e-143 | 405 |
| MS.gene83187.t1 | AT1G72820 | 45.076 | 264 | 124 | 4 | 20 | 262 | 71 | 334 | 1.38e-70 | 221 |
| MS.gene83187.t1 | AT1G72820 | 45.076 | 264 | 124 | 4 | 20 | 262 | 71 | 334 | 1.38e-70 | 221 |
| MS.gene83187.t1 | AT5G26200 | 43.820 | 267 | 130 | 5 | 12 | 262 | 71 | 333 | 5.04e-68 | 214 |
| MS.gene83187.t1 | AT1G07030 | 29.487 | 234 | 141 | 5 | 18 | 246 | 82 | 296 | 1.16e-25 | 103 |
| MS.gene83187.t1 | AT2G30160 | 29.958 | 237 | 139 | 5 | 18 | 246 | 84 | 301 | 1.41e-24 | 100 |
| MS.gene83187.t1 | AT1G34065 | 32.579 | 221 | 125 | 8 | 27 | 246 | 118 | 315 | 3.89e-23 | 97.1 |
| MS.gene83187.t1 | AT1G34065 | 32.579 | 221 | 125 | 8 | 27 | 246 | 111 | 308 | 4.53e-23 | 96.7 |
| MS.gene83187.t1 | AT2G37890 | 27.897 | 233 | 147 | 7 | 20 | 245 | 93 | 311 | 1.69e-20 | 89.4 |
| MS.gene83187.t1 | AT4G39460 | 29.545 | 220 | 131 | 7 | 26 | 244 | 93 | 289 | 1.66e-19 | 86.7 |
| MS.gene83187.t1 | AT4G39460 | 29.545 | 220 | 131 | 7 | 26 | 244 | 93 | 289 | 1.66e-19 | 86.7 |
| MS.gene83187.t1 | AT4G39460 | 29.545 | 220 | 131 | 7 | 26 | 244 | 93 | 289 | 1.66e-19 | 86.7 |
| MS.gene83187.t1 | AT5G42130 | 27.200 | 250 | 148 | 7 | 21 | 260 | 162 | 387 | 1.11e-17 | 82.4 |
| MS.gene83187.t1 | AT3G53940 | 26.180 | 233 | 151 | 5 | 20 | 245 | 121 | 339 | 1.34e-17 | 81.6 |
| MS.gene83187.t1 | AT4G11440 | 24.809 | 262 | 177 | 6 | 3 | 261 | 354 | 598 | 4.93e-17 | 80.9 |
| MS.gene83187.t1 | AT4G11440 | 24.809 | 262 | 177 | 6 | 3 | 261 | 354 | 598 | 4.93e-17 | 80.9 |
| MS.gene83187.t1 | AT4G01100 | 24.723 | 271 | 171 | 5 | 1 | 248 | 16 | 276 | 9.88e-17 | 78.6 |
| MS.gene83187.t1 | AT5G46800 | 28.244 | 262 | 157 | 8 | 13 | 260 | 49 | 293 | 1.28e-16 | 78.2 |
| MS.gene83187.t1 | AT5G46800 | 31.522 | 184 | 98 | 5 | 94 | 260 | 24 | 196 | 3.83e-13 | 68.2 |
| MS.gene83187.t1 | AT5G46800 | 28.244 | 262 | 157 | 8 | 13 | 260 | 49 | 293 | 1.28e-16 | 78.2 |
| MS.gene83187.t1 | AT5G46800 | 31.522 | 184 | 98 | 5 | 94 | 260 | 24 | 196 | 3.83e-13 | 68.2 |
| MS.gene83187.t1 | AT5G46800 | 28.244 | 262 | 157 | 8 | 13 | 260 | 49 | 293 | 1.28e-16 | 78.2 |
| MS.gene83187.t1 | AT5G46800 | 31.522 | 184 | 98 | 5 | 94 | 260 | 24 | 196 | 3.83e-13 | 68.2 |
| MS.gene83187.t1 | AT4G01100 | 25.092 | 271 | 170 | 6 | 1 | 248 | 66 | 326 | 2.08e-16 | 78.2 |
| MS.gene83187.t1 | AT3G55640 | 25.681 | 257 | 165 | 8 | 1 | 245 | 62 | 304 | 3.06e-15 | 74.7 |
| MS.gene83187.t1 | AT3G55640 | 25.681 | 257 | 165 | 8 | 1 | 245 | 62 | 304 | 3.06e-15 | 74.7 |
| MS.gene83187.t1 | AT5G51050 | 27.490 | 251 | 154 | 8 | 17 | 260 | 260 | 489 | 3.59e-15 | 75.1 |
| MS.gene83187.t1 | AT1G79900 | 24.219 | 256 | 161 | 10 | 12 | 260 | 48 | 277 | 7.28e-15 | 73.2 |
| MS.gene83187.t1 | AT4G32400 | 25.692 | 253 | 167 | 6 | 11 | 260 | 145 | 379 | 1.27e-14 | 73.2 |
| MS.gene83187.t1 | AT4G01100 | 25.087 | 287 | 164 | 9 | 1 | 248 | 66 | 340 | 1.35e-14 | 73.2 |
| MS.gene83187.t1 | AT5G01340 | 26.556 | 241 | 147 | 8 | 20 | 248 | 59 | 281 | 2.73e-14 | 71.6 |
| MS.gene83187.t1 | AT2G26360 | 25.210 | 238 | 155 | 5 | 25 | 262 | 158 | 372 | 3.31e-14 | 72.0 |
| MS.gene83187.t1 | AT3G54110 | 27.027 | 185 | 120 | 3 | 79 | 260 | 119 | 291 | 6.58e-14 | 70.5 |
| MS.gene83187.t1 | AT2G33820 | 26.531 | 196 | 118 | 5 | 79 | 262 | 19 | 200 | 1.05e-13 | 70.1 |
| MS.gene83187.t1 | AT2G33820 | 26.531 | 196 | 118 | 5 | 79 | 262 | 19 | 200 | 1.10e-13 | 69.7 |
| MS.gene83187.t1 | AT2G47490 | 25.403 | 248 | 165 | 7 | 17 | 260 | 63 | 294 | 1.05e-12 | 67.0 |
| MS.gene83187.t1 | AT4G26180 | 23.265 | 245 | 151 | 5 | 22 | 248 | 66 | 291 | 1.20e-12 | 67.0 |
| MS.gene83187.t1 | AT4G26180 | 28.718 | 195 | 112 | 7 | 80 | 260 | 24 | 205 | 4.09e-11 | 62.4 |
| MS.gene83187.t1 | AT5G61810 | 26.154 | 260 | 158 | 9 | 10 | 260 | 92 | 326 | 1.31e-12 | 67.0 |
| MS.gene83187.t1 | AT4G26180 | 23.950 | 238 | 144 | 5 | 22 | 241 | 66 | 284 | 2.40e-12 | 66.2 |
| MS.gene83187.t1 | AT5G07320 | 22.519 | 262 | 177 | 8 | 1 | 260 | 233 | 470 | 2.68e-12 | 66.6 |
| MS.gene83187.t1 | AT3G51870 | 30.837 | 227 | 121 | 11 | 22 | 243 | 142 | 337 | 3.03e-12 | 66.2 |
| MS.gene83187.t1 | AT1G25380 | 30.168 | 179 | 107 | 5 | 11 | 178 | 158 | 329 | 3.06e-12 | 66.2 |
| MS.gene83187.t1 | AT1G25380 | 30.168 | 179 | 107 | 5 | 11 | 178 | 158 | 329 | 3.06e-12 | 66.2 |
| MS.gene83187.t1 | AT5G61810 | 26.154 | 260 | 158 | 9 | 10 | 260 | 235 | 469 | 3.28e-12 | 66.2 |
| MS.gene83187.t1 | AT1G14140 | 23.552 | 259 | 167 | 8 | 13 | 260 | 56 | 294 | 4.05e-12 | 65.5 |
| MS.gene83187.t1 | AT5G66380 | 26.829 | 246 | 163 | 8 | 22 | 260 | 59 | 294 | 6.53e-12 | 64.7 |
| MS.gene83187.t1 | AT5G48970 | 22.222 | 270 | 167 | 8 | 18 | 261 | 6 | 258 | 1.05e-11 | 63.9 |
| MS.gene83187.t1 | AT3G20240 | 26.897 | 145 | 100 | 3 | 17 | 161 | 201 | 339 | 1.60e-11 | 63.9 |
| MS.gene83187.t1 | AT5G48970 | 22.222 | 270 | 167 | 8 | 18 | 261 | 77 | 329 | 1.96e-11 | 63.5 |
| MS.gene83187.t1 | AT5G56450 | 31.944 | 144 | 83 | 5 | 22 | 161 | 193 | 325 | 2.07e-11 | 63.5 |
| MS.gene83187.t1 | AT4G03115 | 25.258 | 194 | 107 | 4 | 78 | 260 | 39 | 205 | 2.41e-11 | 62.4 |
| MS.gene83187.t1 | AT4G03115 | 25.258 | 194 | 107 | 4 | 78 | 260 | 39 | 205 | 2.73e-11 | 62.0 |
| MS.gene83187.t1 | AT1G74240 | 23.793 | 290 | 172 | 9 | 2 | 262 | 15 | 284 | 3.34e-11 | 62.8 |
| MS.gene83187.t1 | AT1G74240 | 23.793 | 290 | 172 | 9 | 2 | 262 | 63 | 332 | 3.42e-11 | 63.2 |
| MS.gene83187.t1 | AT4G03115 | 25.258 | 194 | 107 | 4 | 78 | 260 | 71 | 237 | 3.70e-11 | 62.8 |
| MS.gene83187.t1 | AT2G33820 | 25.490 | 204 | 118 | 6 | 79 | 262 | 19 | 208 | 3.94e-11 | 62.8 |
| MS.gene83187.t1 | AT4G03115 | 25.258 | 194 | 107 | 4 | 78 | 260 | 39 | 205 | 4.56e-11 | 62.4 |
| MS.gene83187.t1 | AT2G35800 | 23.305 | 236 | 158 | 4 | 25 | 260 | 587 | 799 | 6.62e-11 | 62.8 |
Find 71 sgRNAs with CRISPR-Local
Find 216 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGCATTCGTGGTTTGTATAA+AGG | 0.257870 | 6.3:-10649470 | MS.gene83187:CDS |
| AGGAGTACCTTTCTCGGATT+TGG | 0.287526 | 6.3:+10647465 | None:intergenic |
| GTAGTTTCAGATAGTTTAAA+TGG | 0.289394 | 6.3:+10649353 | None:intergenic |
| TAGTCTGCCAAAGATTGTTT+TGG | 0.312137 | 6.3:-10647443 | MS.gene83187:CDS |
| ACCCTTGCACCATCAACTTT+TGG | 0.312637 | 6.3:+10648311 | None:intergenic |
| ATGGGGTACTTCAATGATAT+TGG | 0.313800 | 6.3:-10646607 | MS.gene83187:CDS |
| GCCTGAACCAAAACAATCTT+TGG | 0.320437 | 6.3:+10647436 | None:intergenic |
| GCTCAAGTCAACGCTTCTTA+TGG | 0.333157 | 6.3:-10648144 | MS.gene83187:CDS |
| TCAGATTAGCCAAAAGTTGA+TGG | 0.349779 | 6.3:-10648320 | MS.gene83187:intron |
| GCATTCGTGGTTTGTATAAA+GGG | 0.363110 | 6.3:-10649469 | MS.gene83187:CDS |
| TACAATCAAGACTCGGTTAC+AGG | 0.372914 | 6.3:-10647359 | MS.gene83187:intron |
| GCTGACATGCTGACAAATCT+TGG | 0.376196 | 6.3:+10646630 | None:intergenic |
| TGATAAGGTCTGAGGGAATC+CGG | 0.376535 | 6.3:-10648240 | MS.gene83187:CDS |
| AATTATCGTACCACGTCAAT+TGG | 0.383684 | 6.3:+10649263 | None:intergenic |
| CGTGGTTTGTATAAAGGGTT+TGG | 0.386999 | 6.3:-10649464 | MS.gene83187:CDS |
| GGCAGTGAGAAATATGATTC+TGG | 0.390248 | 6.3:+10649415 | None:intergenic |
| AAAGGTGTATATAGAGGATT+AGG | 0.398284 | 6.3:-10646654 | MS.gene83187:CDS |
| ATTCACCATCTAGCGCTGTT+TGG | 0.406563 | 6.3:-10648180 | MS.gene83187:CDS |
| ATGCACTTCTCTCCGCAGTA+TGG | 0.411717 | 6.3:+10649525 | None:intergenic |
| CACCATCTAGCGCTGTTTGG+TGG | 0.425293 | 6.3:-10648177 | MS.gene83187:CDS |
| CAGACTAGGAGTACCTTTCT+CGG | 0.425957 | 6.3:+10647459 | None:intergenic |
| GATAAGGTCTGAGGGAATCC+GGG | 0.449548 | 6.3:-10648239 | MS.gene83187:CDS |
| GCCCACCAAACAGCGCTAGA+TGG | 0.463527 | 6.3:+10648175 | None:intergenic |
| CTCAAGACAGATGGCATTCG+TGG | 0.467371 | 6.3:-10649482 | MS.gene83187:CDS |
| TCAGGCCATGCCCAGTATAG+TGG | 0.467839 | 6.3:-10648286 | MS.gene83187:CDS |
| ATGTTGCTCGTAAGTTGATA+AGG | 0.474358 | 6.3:-10648255 | MS.gene83187:CDS |
| AATTGATCAGTGAGGATGGT+TGG | 0.475537 | 6.3:-10646677 | MS.gene83187:CDS |
| GGCAGGAATTGCTCCGGTGA+CGG | 0.476552 | 6.3:+10649436 | None:intergenic |
| AAATGGTTCAAGCATCTTGA+AGG | 0.482454 | 6.3:+10649370 | None:intergenic |
| GGTTGGAAAGGTGTATATAG+AGG | 0.505069 | 6.3:-10646660 | MS.gene83187:CDS |
| GATTTGTCAGCATGTCAGCA+TGG | 0.509157 | 6.3:-10646626 | MS.gene83187:CDS |
| GCTGTTTGGTGGGCAAGTTA+CGG | 0.509649 | 6.3:-10648166 | MS.gene83187:CDS |
| GGGTTTGGCACTGCCGTCAC+CGG | 0.512242 | 6.3:-10649449 | MS.gene83187:CDS |
| ACCATCTAGCGCTGTTTGGT+GGG | 0.512623 | 6.3:-10648176 | MS.gene83187:CDS |
| AAAACAATCTTTGGCAGACT+AGG | 0.516654 | 6.3:+10647445 | None:intergenic |
| ATTTGTCAGCATGTCAGCAT+GGG | 0.524386 | 6.3:-10646625 | MS.gene83187:CDS |
| AGCCAAAAGTTGATGGTGCA+AGG | 0.530699 | 6.3:-10648313 | MS.gene83187:CDS |
| GCCATAGCGAATGGCATTGG+TGG | 0.530848 | 6.3:-10649323 | MS.gene83187:CDS |
| TTGATGGTGCAAGGGTACTC+AGG | 0.535278 | 6.3:-10648304 | MS.gene83187:CDS |
| CAGGCCATGCCCAGTATAGT+GGG | 0.540829 | 6.3:-10648285 | MS.gene83187:CDS |
| CGAGTCTTGATTGTATCCAA+TGG | 0.544870 | 6.3:+10647367 | None:intergenic |
| TGCCTTAGAGACCACAAAAG+TGG | 0.546512 | 6.3:-10649396 | MS.gene83187:CDS |
| GCCACCAATGCCATTCGCTA+TGG | 0.548089 | 6.3:+10649322 | None:intergenic |
| ACACCACAGGTGATGGGACA+TGG | 0.553449 | 6.3:-10646732 | MS.gene83187:intron |
| GCTGCCATAGCGAATGGCAT+TGG | 0.561150 | 6.3:-10649326 | MS.gene83187:CDS |
| GTGAGAAATATGATTCTGGC+AGG | 0.562074 | 6.3:+10649419 | None:intergenic |
| GATGACGCCAAATCCGAGAA+AGG | 0.571089 | 6.3:-10647472 | MS.gene83187:CDS |
| GGCCATGCCCAGTATAGTGG+GGG | 0.584867 | 6.3:-10648283 | MS.gene83187:CDS |
| GATTCTGGCAGGAATTGCTC+CGG | 0.586094 | 6.3:+10649430 | None:intergenic |
| ATCGTGCATTACAACTCCAT+TGG | 0.587880 | 6.3:-10647383 | MS.gene83187:CDS |
| TTGGTTACACCACAGGTGAT+GGG | 0.589050 | 6.3:-10646738 | MS.gene83187:intron |
| CAAGTCAACGCTTCTTATGG+AGG | 0.592490 | 6.3:-10648141 | MS.gene83187:intron |
| GCCAAAAGTTGATGGTGCAA+GGG | 0.597627 | 6.3:-10648312 | MS.gene83187:CDS |
| AGTGCATTGTCTGTTGTGAA+AGG | 0.598153 | 6.3:-10649509 | MS.gene83187:CDS |
| TCGTAAGTTGATAAGGTCTG+AGG | 0.600329 | 6.3:-10648248 | MS.gene83187:CDS |
| ATCAGTGAGGATGGTTGGAA+AGG | 0.600695 | 6.3:-10646672 | MS.gene83187:CDS |
| AAAGAATTGATCAGTGAGGA+TGG | 0.605272 | 6.3:-10646681 | MS.gene83187:CDS |
| CGTAAGTTGATAAGGTCTGA+GGG | 0.606397 | 6.3:-10648247 | MS.gene83187:CDS |
| ATAAGGTCTGAGGGAATCCG+GGG | 0.614856 | 6.3:-10648238 | MS.gene83187:CDS |
| AGGCCATGCCCAGTATAGTG+GGG | 0.616339 | 6.3:-10648284 | MS.gene83187:CDS |
| AAAGGATTACTCAAGACAGA+TGG | 0.621271 | 6.3:-10649491 | MS.gene83187:CDS |
| TAAACTATCTGAAACTACAC+AGG | 0.624945 | 6.3:-10649348 | MS.gene83187:CDS |
| CAAACCCTCGGTATAACCCC+CGG | 0.627668 | 6.3:+10648221 | None:intergenic |
| ACACAGGCTGCCATAGCGAA+TGG | 0.640012 | 6.3:-10649332 | MS.gene83187:CDS |
| CATTGGATACAATCAAGACT+CGG | 0.643386 | 6.3:-10647366 | MS.gene83187:CDS |
| TGTTAAAGAATTGATCAGTG+AGG | 0.667195 | 6.3:-10646685 | MS.gene83187:CDS |
| TAACAGATAGACCAAACCCT+CGG | 0.686669 | 6.3:+10648209 | None:intergenic |
| TTTGTCAGCATGTCAGCATG+GGG | 0.695351 | 6.3:-10646624 | MS.gene83187:CDS |
| TGTGTTTGTTCCAATTGACG+TGG | 0.709166 | 6.3:-10649273 | MS.gene83187:intron |
| TAAGGTCTGAGGGAATCCGG+GGG | 0.742890 | 6.3:-10648237 | MS.gene83187:CDS |
| GGTTGCTTCAAACCATACTG+CGG | 0.743023 | 6.3:-10649537 | MS.gene83187:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATTTTTTCCATTTATATT+AGG | + | chr6.3:10649269-10649288 | None:intergenic | 10.0% |
| !!! | AATTTTTTCCATTTATATTA+GGG | + | chr6.3:10649268-10649287 | None:intergenic | 10.0% |
| !!! | ATATTTTACTAATAATGATT+TGG | - | chr6.3:10648859-10648878 | MS.gene83187:intron | 10.0% |
| !! | AAAAGAAAAAAAACTAATCT+CGG | + | chr6.3:10648518-10648537 | None:intergenic | 15.0% |
| !! | AATATGACATTAAATTCATA+TGG | + | chr6.3:10647700-10647719 | None:intergenic | 15.0% |
| !! | AATGAATAAGTGTTAAATTT+AGG | - | chr6.3:10648032-10648051 | MS.gene83187:intron | 15.0% |
| !!! | ATATTTTTACTGTTTTCATT+TGG | - | chr6.3:10648824-10648843 | MS.gene83187:intron | 15.0% |
| !!! | TCAAATATTCTTTTTTAGAA+AGG | + | chr6.3:10647594-10647613 | None:intergenic | 15.0% |
| !!! | TTCAACTTTTTTTTTTGTAA+TGG | - | chr6.3:10648537-10648556 | MS.gene83187:intron | 15.0% |
| !! | AAAGAAAAAAAACTAATCTC+GGG | + | chr6.3:10648517-10648536 | None:intergenic | 20.0% |
| !! | ATTTATTGCCCTAATATAAA+TGG | - | chr6.3:10649257-10649276 | MS.gene83187:intron | 20.0% |
| !! | GAAGTAATAACATTTGAATA+AGG | + | chr6.3:10647752-10647771 | None:intergenic | 20.0% |
| !! | TAACTTTCTGTGTATAATAA+AGG | + | chr6.3:10646908-10646927 | None:intergenic | 20.0% |
| !! | TATTAATTGATGAATCTAAC+TGG | + | chr6.3:10648222-10648241 | None:intergenic | 20.0% |
| !! | TTTGTCAATCAAAAAATCAA+CGG | + | chr6.3:10647507-10647526 | None:intergenic | 20.0% |
| !!! | CAAAATCTGTATTTGATTTT+AGG | + | chr6.3:10648340-10648359 | None:intergenic | 20.0% |
| !!! | TCTACTGAAATTTTATTTCT+CGG | + | chr6.3:10648578-10648597 | None:intergenic | 20.0% |
| ! | AAAAAAATTGGACTCATTGA+TGG | - | chr6.3:10646933-10646952 | MS.gene83187:intron | 25.0% |
| ! | AAATATAACAACAACCAACA+AGG | + | chr6.3:10648810-10648829 | None:intergenic | 25.0% |
| ! | AGTACACTTTAATACATATG+TGG | - | chr6.3:10646989-10647008 | MS.gene83187:intron | 25.0% |
| ! | ATATTAAGGAGAATATTCAC+TGG | - | chr6.3:10648617-10648636 | MS.gene83187:intron | 25.0% |
| ! | CAATTGAGTCAGAAAAAATT+AGG | + | chr6.3:10649379-10649398 | None:intergenic | 25.0% |
| ! | GATGCATACTAACAATATTA+AGG | - | chr6.3:10648603-10648622 | MS.gene83187:intron | 25.0% |
| ! | GTACACTTTAATACATATGT+GGG | - | chr6.3:10646990-10647009 | MS.gene83187:intron | 25.0% |
| ! | GTAGTTTCAGATAGTTTAAA+TGG | + | chr6.3:10646784-10646803 | None:intergenic | 25.0% |
| ! | GTGTATGATACTTATACATA+TGG | - | chr6.3:10646958-10646977 | MS.gene83187:intron | 25.0% |
| ! | GTTGGGGAAAATAATTAAAA+TGG | - | chr6.3:10647208-10647227 | MS.gene83187:intron | 25.0% |
| ! | TAATAGCTAATCCAAACAAT+AGG | - | chr6.3:10647620-10647639 | MS.gene83187:intron | 25.0% |
| ! | TTGTCAATCAAAAAATCAAC+GGG | + | chr6.3:10647506-10647525 | None:intergenic | 25.0% |
| ! | TTTCTAACTATGTCAGATAT+TGG | - | chr6.3:10647033-10647052 | MS.gene83187:intron | 25.0% |
| !! | TCTCAATCCTTCAAAATTTT+CGG | + | chr6.3:10647262-10647281 | None:intergenic | 25.0% |
| !!! | ATAATGATTTGGTGTTAAAG+TGG | - | chr6.3:10648870-10648889 | MS.gene83187:intron | 25.0% |
| !!! | CTAATTTTTTCTGACTCAAT+TGG | - | chr6.3:10649377-10649396 | MS.gene83187:CDS | 25.0% |
| AAACTAATCTCGGGTAAAAT+TGG | + | chr6.3:10648508-10648527 | None:intergenic | 30.0% | |
| AATAAGCATATAAGAAGCGA+TGG | + | chr6.3:10647774-10647793 | None:intergenic | 30.0% | |
| ACTGCTTGAAATACATGAAT+TGG | - | chr6.3:10648417-10648436 | MS.gene83187:intron | 30.0% | |
| AGACTTGTAATCCTATTGTT+TGG | + | chr6.3:10647634-10647653 | None:intergenic | 30.0% | |
| AGTCAGAAAAAATTAGGAGT+CGG | + | chr6.3:10649373-10649392 | None:intergenic | 30.0% | |
| ATCAGATATATGAGCTACTT+TGG | + | chr6.3:10648286-10648305 | None:intergenic | 30.0% | |
| CAATTGTATTTACTTTAGCC+CGG | - | chr6.3:10649344-10649363 | MS.gene83187:CDS | 30.0% | |
| CTGAAAATCATTCAACGTTA+AGG | + | chr6.3:10647798-10647817 | None:intergenic | 30.0% | |
| GAATAACTCATTACATGATC+TGG | + | chr6.3:10648376-10648395 | None:intergenic | 30.0% | |
| GGGCTAAAGTAAATACAATT+GGG | + | chr6.3:10649345-10649364 | None:intergenic | 30.0% | |
| GTTTACTTTCGAACACTATT+TGG | - | chr6.3:10647132-10647151 | MS.gene83187:intron | 30.0% | |
| TAGTGCCTGAATCAAAATAA+GGG | + | chr6.3:10647160-10647179 | None:intergenic | 30.0% | |
| TGAATAAGGTAGAAAATGAG+AGG | + | chr6.3:10647738-10647757 | None:intergenic | 30.0% | |
| TGTTAAAGAATTGATCAGTG+AGG | - | chr6.3:10649449-10649468 | MS.gene83187:CDS | 30.0% | |
| ! | AAAGGTGTATATAGAGGATT+AGG | - | chr6.3:10649480-10649499 | MS.gene83187:CDS | 30.0% |
| ! | CTTTATTTCCAAACATAAGG+TGG | - | chr6.3:10647303-10647322 | MS.gene83187:intron | 30.0% |
| ! | TAAACTATCTGAAACTACAC+AGG | - | chr6.3:10646786-10646805 | MS.gene83187:intron | 30.0% |
| ! | TATCCTTCTGTTTGATAGTT+GGG | - | chr6.3:10647191-10647210 | MS.gene83187:intron | 30.0% |
| ! | TTATCCTTCTGTTTGATAGT+TGG | - | chr6.3:10647190-10647209 | MS.gene83187:intron | 30.0% |
| !! | AATTGGTTCAAGCTTTTGAT+AGG | + | chr6.3:10648491-10648510 | None:intergenic | 30.0% |
| !! | GTTTGGATTAGCTATTATGA+AGG | + | chr6.3:10647617-10647636 | None:intergenic | 30.0% |
| !! | TTTTAACTAGCAAGCGTTTT+CGG | - | chr6.3:10647333-10647352 | MS.gene83187:intron | 30.0% |
| AAAACAATCTTTGGCAGACT+AGG | + | chr6.3:10648692-10648711 | None:intergenic | 35.0% | |
| AAAGAATTGATCAGTGAGGA+TGG | - | chr6.3:10649453-10649472 | MS.gene83187:CDS | 35.0% | |
| AAAGGATTACTCAAGACAGA+TGG | - | chr6.3:10646643-10646662 | MS.gene83187:CDS | 35.0% | |
| AAATGGTTCAAGCATCTTGA+AGG | + | chr6.3:10646767-10646786 | None:intergenic | 35.0% | |
| AACGGGCATAAATGATCATA+AGG | + | chr6.3:10647489-10647508 | None:intergenic | 35.0% | |
| AATGAGTTATTCAGCCTCAA+AGG | - | chr6.3:10648384-10648403 | MS.gene83187:intron | 35.0% | |
| AATTATCGTACCACGTCAAT+TGG | + | chr6.3:10646874-10646893 | None:intergenic | 35.0% | |
| ACAGAATACCACCTTATGTT+TGG | + | chr6.3:10647314-10647333 | None:intergenic | 35.0% | |
| AGAAGAAAACAGTTGTCTAC+AGG | + | chr6.3:10649161-10649180 | None:intergenic | 35.0% | |
| AGTGGAGTACAAAGTTATAC+AGG | + | chr6.3:10648197-10648216 | None:intergenic | 35.0% | |
| ATTCCGTCTATTAAACTGCT+AGG | - | chr6.3:10648089-10648108 | MS.gene83187:intron | 35.0% | |
| CAGTGTAATTCAATCCTTTG+AGG | + | chr6.3:10648401-10648420 | None:intergenic | 35.0% | |
| CATTGGATACAATCAAGACT+CGG | - | chr6.3:10648768-10648787 | MS.gene83187:intron | 35.0% | |
| CGGGCTAAAGTAAATACAAT+TGG | + | chr6.3:10649346-10649365 | None:intergenic | 35.0% | |
| CTAGTGCCTGAATCAAAATA+AGG | + | chr6.3:10647161-10647180 | None:intergenic | 35.0% | |
| GAAGAAAACAGTTGTCTACA+GGG | + | chr6.3:10649160-10649179 | None:intergenic | 35.0% | |
| TAACAACAACCAACAAGGTT+AGG | + | chr6.3:10648805-10648824 | None:intergenic | 35.0% | |
| TCTGATTTCGTTGTATTCCA+AGG | - | chr6.3:10648300-10648319 | MS.gene83187:CDS | 35.0% | |
| TGATGAATCTAACTGGTTAG+TGG | + | chr6.3:10648215-10648234 | None:intergenic | 35.0% | |
| TGTTAAAGTGACAACTGCAT+TGG | - | chr6.3:10648977-10648996 | MS.gene83187:intron | 35.0% | |
| ! | AGAATATTCACTGGTTGCTT+TGG | - | chr6.3:10648626-10648645 | MS.gene83187:intron | 35.0% |
| ! | ATCCTTCTGTTTGATAGTTG+GGG | - | chr6.3:10647192-10647211 | MS.gene83187:intron | 35.0% |
| ! | ATGGGGTACTTCAATGATAT+TGG | - | chr6.3:10649527-10649546 | MS.gene83187:CDS | 35.0% |
| ! | GCATTCGTGGTTTGTATAAA+GGG | - | chr6.3:10646665-10646684 | MS.gene83187:CDS | 35.0% |
| ! | TAGTCTGCCAAAGATTGTTT+TGG | - | chr6.3:10648691-10648710 | MS.gene83187:intron | 35.0% |
| ! | TCAAAATTTTCGGATGCACA+AGG | + | chr6.3:10647252-10647271 | None:intergenic | 35.0% |
| ! | TCAGATTAGCCAAAAGTTGA+TGG | - | chr6.3:10647814-10647833 | MS.gene83187:intron | 35.0% |
| ! | TGTGCATCCGAAAATTTTGA+AGG | - | chr6.3:10647252-10647271 | MS.gene83187:intron | 35.0% |
| ! | TTTTTCCCTGTCTTTCATCA+TGG | - | chr6.3:10647446-10647465 | MS.gene83187:CDS | 35.0% |
| !! | ATGTTGCTCGTAAGTTGATA+AGG | - | chr6.3:10647879-10647898 | MS.gene83187:intron | 35.0% |
| !! | GCGCTTTATTTCCAAACATA+AGG | - | chr6.3:10647300-10647319 | MS.gene83187:intron | 35.0% |
| !! | TTTTGATTCAGGCACTAGTT+TGG | - | chr6.3:10647163-10647182 | MS.gene83187:intron | 35.0% |
| AAAAATTAGGAGTCGGTTGC+CGG | + | chr6.3:10649366-10649385 | None:intergenic | 40.0% | |
| AACTTTCCTCAGTTCAACAC+AGG | + | chr6.3:10648445-10648464 | None:intergenic | 40.0% | |
| AATTGATCAGTGAGGATGGT+TGG | - | chr6.3:10649457-10649476 | MS.gene83187:CDS | 40.0% | |
| ACAGGTATTCCTAACCTTGT+TGG | - | chr6.3:10648793-10648812 | MS.gene83187:intron | 40.0% | |
| ACTCATTACATGATCTGGCA+AGG | + | chr6.3:10648371-10648390 | None:intergenic | 40.0% | |
| AGCACCACAAATCAGATTGT+AGG | - | chr6.3:10648159-10648178 | MS.gene83187:CDS | 40.0% | |
| AGTGCATTGTCTGTTGTGAA+AGG | - | chr6.3:10646625-10646644 | MS.gene83187:CDS | 40.0% | |
| AGTTGCCATGATGAAAGACA+GGG | + | chr6.3:10647454-10647473 | None:intergenic | 40.0% | |
| ATCGTGCATTACAACTCCAT+TGG | - | chr6.3:10648751-10648770 | MS.gene83187:intron | 40.0% | |
| ATTTGTCAGCATGTCAGCAT+GGG | - | chr6.3:10649509-10649528 | MS.gene83187:CDS | 40.0% | |
| CAAATGGCATAATAACCCAC+CGG | + | chr6.3:10648115-10648134 | None:intergenic | 40.0% | |
| CAACACAGACATGCAACAAA+TGG | + | chr6.3:10648131-10648150 | None:intergenic | 40.0% | |
| CGAGTCTTGATTGTATCCAA+TGG | + | chr6.3:10648770-10648789 | None:intergenic | 40.0% | |
| GCCTGAACCAAAACAATCTT+TGG | + | chr6.3:10648701-10648720 | None:intergenic | 40.0% | |
| GGCAGTGAGAAATATGATTC+TGG | + | chr6.3:10646722-10646741 | None:intergenic | 40.0% | |
| GTGAGAAATATGATTCTGGC+AGG | + | chr6.3:10646718-10646737 | None:intergenic | 40.0% | |
| TAACAGATAGACCAAACCCT+CGG | + | chr6.3:10647928-10647947 | None:intergenic | 40.0% | |
| TGTGTTTGTTCCAATTGACG+TGG | - | chr6.3:10646861-10646880 | MS.gene83187:intron | 40.0% | |
| TGTTAAAGTGGCAACTGCAT+TGG | - | chr6.3:10648882-10648901 | MS.gene83187:intron | 40.0% | |
| TTCCCCAACTATCAAACAGA+AGG | + | chr6.3:10647197-10647216 | None:intergenic | 40.0% | |
| TTCGTTGTATTCCAAGGACA+TGG | - | chr6.3:10648306-10648325 | MS.gene83187:CDS | 40.0% | |
| ! | CGTGGTTTGTATAAAGGGTT+TGG | - | chr6.3:10646670-10646689 | MS.gene83187:CDS | 40.0% |
| ! | GGCATTCGTGGTTTGTATAA+AGG | - | chr6.3:10646664-10646683 | MS.gene83187:CDS | 40.0% |
| ! | GGTTGGAAAGGTGTATATAG+AGG | - | chr6.3:10649474-10649493 | MS.gene83187:CDS | 40.0% |
| ! | GTTTTCGGTCTATGTTGTCT+CGG | - | chr6.3:10647348-10647367 | MS.gene83187:intron | 40.0% |
| ! | TACAATCAAGACTCGGTTAC+AGG | - | chr6.3:10648775-10648794 | MS.gene83187:intron | 40.0% |
| !! | CGTAAGTTGATAAGGTCTGA+GGG | - | chr6.3:10647887-10647906 | MS.gene83187:intron | 40.0% |
| !! | TCGTAAGTTGATAAGGTCTG+AGG | - | chr6.3:10647886-10647905 | MS.gene83187:intron | 40.0% |
| !! | TCTGATTTGTGGTGCTACAT+AGG | + | chr6.3:10648155-10648174 | None:intergenic | 40.0% |
| !!! | GCCAAAGATTGTTTTGGTTC+AGG | - | chr6.3:10648697-10648716 | MS.gene83187:intron | 40.0% |
| !!! | TGGCACCCTTATTTTGATTC+AGG | - | chr6.3:10647152-10647171 | MS.gene83187:intron | 40.0% |
| AAAATTAGGAGTCGGTTGCC+GGG | + | chr6.3:10649365-10649384 | None:intergenic | 45.0% | |
| AATCAGATTGTAGGCGTGTC+TGG | - | chr6.3:10648168-10648187 | MS.gene83187:CDS | 45.0% | |
| AGGATTGAGAGCAACGATGT+AGG | - | chr6.3:10647272-10647291 | MS.gene83187:intron | 45.0% | |
| ATCAGTGAGGATGGTTGGAA+AGG | - | chr6.3:10649462-10649481 | MS.gene83187:CDS | 45.0% | |
| ATTCACCATCTAGCGCTGTT+TGG | - | chr6.3:10647954-10647973 | MS.gene83187:intron | 45.0% | |
| ATTGGTTACACCACAGGTGA+TGG | - | chr6.3:10649395-10649414 | MS.gene83187:CDS | 45.0% | |
| CAAGTCAACGCTTCTTATGG+AGG | - | chr6.3:10647993-10648012 | MS.gene83187:intron | 45.0% | |
| CAGTTGCCATGATGAAAGAC+AGG | + | chr6.3:10647455-10647474 | None:intergenic | 45.0% | |
| CGGCCTAGCAGTTTAATAGA+CGG | + | chr6.3:10648095-10648114 | None:intergenic | 45.0% | |
| CGTCTATTAAACTGCTAGGC+CGG | - | chr6.3:10648093-10648112 | MS.gene83187:intron | 45.0% | |
| CTGTCTTTCATCATGGCAAC+TGG | - | chr6.3:10647453-10647472 | MS.gene83187:CDS | 45.0% | |
| CTTCTTATGGAGGTGAGACA+TGG | - | chr6.3:10648003-10648022 | MS.gene83187:intron | 45.0% | |
| GACTCAATTGGTTACACCAC+AGG | - | chr6.3:10649389-10649408 | MS.gene83187:CDS | 45.0% | |
| GATTTGTCAGCATGTCAGCA+TGG | - | chr6.3:10649508-10649527 | MS.gene83187:CDS | 45.0% | |
| GCTCAAGTCAACGCTTCTTA+TGG | - | chr6.3:10647990-10648009 | MS.gene83187:intron | 45.0% | |
| GCTGACATGCTGACAAATCT+TGG | + | chr6.3:10649507-10649526 | None:intergenic | 45.0% | |
| GGTTGCTTCAAACCATACTG+CGG | - | chr6.3:10646597-10646616 | MS.gene83187:CDS | 45.0% | |
| TATTAAACTGCTAGGCCGGT+GGG | - | chr6.3:10648097-10648116 | MS.gene83187:intron | 45.0% | |
| TCTATGTTGTCTCGGTTGCT+GGG | - | chr6.3:10647356-10647375 | MS.gene83187:intron | 45.0% | |
| TGATAAGGTCTGAGGGAATC+CGG | - | chr6.3:10647894-10647913 | MS.gene83187:intron | 45.0% | |
| TGCCTTAGAGACCACAAAAG+TGG | - | chr6.3:10646738-10646757 | MS.gene83187:intron | 45.0% | |
| TTGGTACCTGTGTTGAACTG+AGG | - | chr6.3:10648436-10648455 | MS.gene83187:intron | 45.0% | |
| TTGGTTACACCACAGGTGAT+GGG | - | chr6.3:10649396-10649415 | MS.gene83187:CDS | 45.0% | |
| TTTGTCAGCATGTCAGCATG+GGG | - | chr6.3:10649510-10649529 | MS.gene83187:CDS | 45.0% | |
| ! | ACCCTTGCACCATCAACTTT+TGG | + | chr6.3:10647826-10647845 | None:intergenic | 45.0% |
| ! | CACGCCTACAATCTGATTTG+TGG | + | chr6.3:10648166-10648185 | None:intergenic | 45.0% |
| ! | TGATTCAGGCACTAGTTTGG+CGG | - | chr6.3:10647166-10647185 | MS.gene83187:intron | 45.0% |
| !! | AGCCAAAAGTTGATGGTGCA+AGG | - | chr6.3:10647821-10647840 | MS.gene83187:intron | 45.0% |
| !! | AGGAGTACCTTTCTCGGATT+TGG | + | chr6.3:10648672-10648691 | None:intergenic | 45.0% |
| !! | AGGTAGTTTTGCCATGTCCT+TGG | + | chr6.3:10648320-10648339 | None:intergenic | 45.0% |
| !! | CAGACTAGGAGTACCTTTCT+CGG | + | chr6.3:10648678-10648697 | None:intergenic | 45.0% |
| !! | GCCAAAAGTTGATGGTGCAA+GGG | - | chr6.3:10647822-10647841 | MS.gene83187:intron | 45.0% |
| !!! | AGCCACTTTTGTGGTCTCTA+AGG | + | chr6.3:10646743-10646762 | None:intergenic | 45.0% |
| !!! | ATTGTTTTGGTTCAGGCAGC+AGG | - | chr6.3:10648704-10648723 | MS.gene83187:intron | 45.0% |
| !!! | CTTGAAGGAAGCCACTTTTG+TGG | + | chr6.3:10646752-10646771 | None:intergenic | 45.0% |
| !!! | TTGTTTTGGTTCAGGCAGCA+GGG | - | chr6.3:10648705-10648724 | MS.gene83187:intron | 45.0% |
| !! | AAAGTTAAAAAAAAAAAAAT+TGG | - | chr6.3:10646921-10646940 | MS.gene83187:intron | 5.0% |
| ACCATCTAGCGCTGTTTGGT+GGG | - | chr6.3:10647958-10647977 | MS.gene83187:intron | 50.0% | |
| AGAGAGAGAGAGAGAGAGAG+AGG | + | chr6.3:10648912-10648931 | None:intergenic | 50.0% | |
| AGAGAGAGAGAGAGAGAGGA+GGG | + | chr6.3:10649105-10649124 | None:intergenic | 50.0% | |
| ATAAGGTCTGAGGGAATCCG+GGG | - | chr6.3:10647896-10647915 | MS.gene83187:intron | 50.0% | |
| ATCCAAGCCCCCACTATACT+GGG | + | chr6.3:10647861-10647880 | None:intergenic | 50.0% | |
| ATGCACTTCTCTCCGCAGTA+TGG | + | chr6.3:10646612-10646631 | None:intergenic | 50.0% | |
| CTATTAAACTGCTAGGCCGG+TGG | - | chr6.3:10648096-10648115 | MS.gene83187:intron | 50.0% | |
| CTCAAGACAGATGGCATTCG+TGG | - | chr6.3:10646652-10646671 | MS.gene83187:CDS | 50.0% | |
| GATAAGGTCTGAGGGAATCC+GGG | - | chr6.3:10647895-10647914 | MS.gene83187:intron | 50.0% | |
| GATGACGCCAAATCCGAGAA+AGG | - | chr6.3:10648662-10648681 | MS.gene83187:intron | 50.0% | |
| GATTCTGGCAGGAATTGCTC+CGG | + | chr6.3:10646707-10646726 | None:intergenic | 50.0% | |
| GTCTATGTTGTCTCGGTTGC+TGG | - | chr6.3:10647355-10647374 | MS.gene83187:intron | 50.0% | |
| TTTCCATGTCCCATCACCTG+TGG | + | chr6.3:10649408-10649427 | None:intergenic | 50.0% | |
| ! | GCTGTTTGGTGGGCAAGTTA+CGG | - | chr6.3:10647968-10647987 | MS.gene83187:intron | 50.0% |
| !! | TTGATGGTGCAAGGGTACTC+AGG | - | chr6.3:10647830-10647849 | MS.gene83187:intron | 50.0% |
| !!! | TGTTTTGGTTCAGGCAGCAG+GGG | - | chr6.3:10648706-10648725 | MS.gene83187:intron | 50.0% |
| ACACAGGCTGCCATAGCGAA+TGG | - | chr6.3:10646802-10646821 | MS.gene83187:intron | 55.0% | |
| AGAGAGAGAGAGAGGAGGGA+GGG | + | chr6.3:10649101-10649120 | None:intergenic | 55.0% | |
| AGGCCATGCCCAGTATAGTG+GGG | - | chr6.3:10647850-10647869 | MS.gene83187:intron | 55.0% | |
| CAAACCCTCGGTATAACCCC+CGG | + | chr6.3:10647916-10647935 | None:intergenic | 55.0% | |
| CACCATCTAGCGCTGTTTGG+TGG | - | chr6.3:10647957-10647976 | MS.gene83187:intron | 55.0% | |
| CAGGCCATGCCCAGTATAGT+GGG | - | chr6.3:10647849-10647868 | MS.gene83187:intron | 55.0% | |
| CATCCAAGCCCCCACTATAC+TGG | + | chr6.3:10647862-10647881 | None:intergenic | 55.0% | |
| CGAGAGAGAGAGAGAGAGAG+AGG | + | chr6.3:10649130-10649149 | None:intergenic | 55.0% | |
| GAATCCGGGGGTTATACCGA+GGG | - | chr6.3:10647909-10647928 | MS.gene83187:intron | 55.0% | |
| GAGAGAGAGAGAGAGAGAGG+AGG | + | chr6.3:10648911-10648930 | None:intergenic | 55.0% | |
| GCCACCAATGCCATTCGCTA+TGG | + | chr6.3:10646815-10646834 | None:intergenic | 55.0% | |
| GCTGCCATAGCGAATGGCAT+TGG | - | chr6.3:10646808-10646827 | MS.gene83187:intron | 55.0% | |
| GGAGAGAGAGAGAGAGAGAG+AGG | + | chr6.3:10649049-10649068 | None:intergenic | 55.0% | |
| TAAGGTCTGAGGGAATCCGG+GGG | - | chr6.3:10647897-10647916 | MS.gene83187:intron | 55.0% | |
| TCAGGCCATGCCCAGTATAG+TGG | - | chr6.3:10647848-10647867 | MS.gene83187:intron | 55.0% | |
| ! | GCCATAGCGAATGGCATTGG+TGG | - | chr6.3:10646811-10646830 | MS.gene83187:intron | 55.0% |
| !! | ACACCACAGGTGATGGGACA+TGG | - | chr6.3:10649402-10649421 | MS.gene83187:CDS | 55.0% |
| !! | GCAGCAGGGGGTATTATTGC+TGG | - | chr6.3:10648719-10648738 | MS.gene83187:intron | 55.0% |
| !!! | GTTTTGGTTCAGGCAGCAGG+GGG | - | chr6.3:10648707-10648726 | MS.gene83187:intron | 55.0% |
| AGAGAGAGAGGAGGGAGGGA+GGG | + | chr6.3:10649097-10649116 | None:intergenic | 60.0% | |
| AGCCCCCACTATACTGGGCA+TGG | + | chr6.3:10647856-10647875 | None:intergenic | 60.0% | |
| CGGGGGTTATACCGAGGGTT+TGG | - | chr6.3:10647914-10647933 | MS.gene83187:intron | 60.0% | |
| GAGAGAGAGAGAGAGGAGGG+AGG | + | chr6.3:10649102-10649121 | None:intergenic | 60.0% | |
| GCCCACCAAACAGCGCTAGA+TGG | + | chr6.3:10647962-10647981 | None:intergenic | 60.0% | |
| GGAATCCGGGGGTTATACCG+AGG | - | chr6.3:10647908-10647927 | MS.gene83187:intron | 60.0% | |
| GGCAGGAATTGCTCCGGTGA+CGG | + | chr6.3:10646701-10646720 | None:intergenic | 60.0% | |
| GGCCATGCCCAGTATAGTGG+GGG | - | chr6.3:10647851-10647870 | MS.gene83187:intron | 60.0% | |
| ! | TGCCCAGTATAGTGGGGGCT+TGG | - | chr6.3:10647856-10647875 | MS.gene83187:intron | 60.0% |
| AGAGAGGAGGGAGGGAGGGA+GGG | + | chr6.3:10649093-10649112 | None:intergenic | 65.0% | |
| GAGAGAGAGAGGAGGGAGGG+AGG | + | chr6.3:10649098-10649117 | None:intergenic | 65.0% | |
| GGGTTTGGCACTGCCGTCAC+CGG | - | chr6.3:10646685-10646704 | MS.gene83187:CDS | 65.0% | |
| AGGAGGGAGGGAGGGAGGGA+GGG | + | chr6.3:10649089-10649108 | None:intergenic | 70.0% | |
| AGGGAGGGAGGGAGGGAGGA+GGG | + | chr6.3:10649082-10649101 | None:intergenic | 70.0% | |
| GAGAGAGGAGGGAGGGAGGG+AGG | + | chr6.3:10649094-10649113 | None:intergenic | 70.0% | |
| AGGGAGGAGGGGGAGGGGGA+GGG | + | chr6.3:10649070-10649089 | None:intergenic | 75.0% | |
| AGGGAGGGAGGAGGGGGAGG+GGG | + | chr6.3:10649074-10649093 | None:intergenic | 75.0% | |
| AGGGAGGGAGGGAGGGAGGG+AGG | + | chr6.3:10649086-10649105 | None:intergenic | 75.0% | |
| GAGGAGGGAGGGAGGGAGGG+AGG | + | chr6.3:10649090-10649109 | None:intergenic | 75.0% | |
| GAGGGAGGGAGGAGGGGGAG+GGG | + | chr6.3:10649075-10649094 | None:intergenic | 75.0% | |
| GAGGGAGGGAGGGAGGGAGG+AGG | + | chr6.3:10649083-10649102 | None:intergenic | 75.0% | |
| GGAGGGAGGGAGGAGGGGGA+GGG | + | chr6.3:10649076-10649095 | None:intergenic | 75.0% | |
| GGAGGGAGGGAGGGAGGAGG+GGG | + | chr6.3:10649080-10649099 | None:intergenic | 75.0% | |
| GGGAGGGAGGGAGGGAGGAG+GGG | + | chr6.3:10649081-10649100 | None:intergenic | 75.0% | |
| ! | GAGGGAGGAGGGGGAGGGGG+AGG | + | chr6.3:10649071-10649090 | None:intergenic | 80.0% |
| ! | GGGAGGGAGGGAGGAGGGGG+AGG | + | chr6.3:10649077-10649096 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.3 | gene | 10646592 | 10649564 | 10646592 | ID=MS.gene83187 |
| chr6.3 | mRNA | 10646592 | 10649564 | 10646592 | ID=MS.gene83187.t1;Parent=MS.gene83187 |
| chr6.3 | exon | 10649274 | 10649564 | 10649274 | ID=MS.gene83187.t1.exon1;Parent=MS.gene83187.t1 |
| chr6.3 | CDS | 10649274 | 10649564 | 10649274 | ID=cds.MS.gene83187.t1;Parent=MS.gene83187.t1 |
| chr6.3 | exon | 10648142 | 10648338 | 10648142 | ID=MS.gene83187.t1.exon2;Parent=MS.gene83187.t1 |
| chr6.3 | CDS | 10648142 | 10648338 | 10648142 | ID=cds.MS.gene83187.t1;Parent=MS.gene83187.t1 |
| chr6.3 | exon | 10647360 | 10647504 | 10647360 | ID=MS.gene83187.t1.exon3;Parent=MS.gene83187.t1 |
| chr6.3 | CDS | 10647360 | 10647504 | 10647360 | ID=cds.MS.gene83187.t1;Parent=MS.gene83187.t1 |
| chr6.3 | exon | 10646592 | 10646745 | 10646592 | ID=MS.gene83187.t1.exon4;Parent=MS.gene83187.t1 |
| chr6.3 | CDS | 10646592 | 10646745 | 10646592 | ID=cds.MS.gene83187.t1;Parent=MS.gene83187.t1 |
| Gene Sequence |
| Protein sequence |
