Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83239.t1 | XP_003595645.1 | 97.2 | 326 | 9 | 0 | 1 | 326 | 64 | 389 | 6.20E-181 | 643.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83239.t1 | O23884 | 88.7 | 326 | 37 | 0 | 1 | 326 | 64 | 389 | 5.2e-168 | 591.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83239.t1 | G7IQL2 | 97.2 | 326 | 9 | 0 | 1 | 326 | 64 | 389 | 4.5e-181 | 643.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049549 | MS.gene83239 | 0.818511 | 1.89E-52 | -1.69E-46 |
| MS.gene051131 | MS.gene83239 | 0.809824 | 1.56E-50 | -1.69E-46 |
| MS.gene05240 | MS.gene83239 | 0.836408 | 9.52E-57 | -1.69E-46 |
| MS.gene052702 | MS.gene83239 | 0.802183 | 6.33E-49 | -1.69E-46 |
| MS.gene052705 | MS.gene83239 | 0.805937 | 1.05E-49 | -1.69E-46 |
| MS.gene054181 | MS.gene83239 | 0.830427 | 2.95E-55 | -1.69E-46 |
| MS.gene054277 | MS.gene83239 | 0.82957 | 4.78E-55 | -1.69E-46 |
| MS.gene054742 | MS.gene83239 | 0.832658 | 8.34E-56 | -1.69E-46 |
| MS.gene05483 | MS.gene83239 | 0.814549 | 1.46E-51 | -1.69E-46 |
| MS.gene056590 | MS.gene83239 | 0.85262 | 4.10E-61 | -1.69E-46 |
| MS.gene056591 | MS.gene83239 | 0.852085 | 5.82E-61 | -1.69E-46 |
| MS.gene056748 | MS.gene83239 | 0.817994 | 2.47E-52 | -1.69E-46 |
| MS.gene056856 | MS.gene83239 | 0.810135 | 1.34E-50 | -1.69E-46 |
| MS.gene056920 | MS.gene83239 | 0.831306 | 1.80E-55 | -1.69E-46 |
| MS.gene057544 | MS.gene83239 | 0.81965 | 1.04E-52 | -1.69E-46 |
| MS.gene057548 | MS.gene83239 | 0.806057 | 9.90E-50 | -1.69E-46 |
| MS.gene059402 | MS.gene83239 | 0.800552 | 1.37E-48 | -1.69E-46 |
| MS.gene059953 | MS.gene83239 | 0.834499 | 2.89E-56 | -1.69E-46 |
| MS.gene059955 | MS.gene83239 | 0.815491 | 9.00E-52 | -1.69E-46 |
| MS.gene060405 | MS.gene83239 | 0.801223 | 9.97E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83239.t1 | MTR_2g058470 | 97.239 | 326 | 9 | 0 | 1 | 326 | 64 | 389 | 0.0 | 657 |
| MS.gene83239.t1 | MTR_5g007713 | 88.344 | 326 | 38 | 0 | 1 | 326 | 64 | 389 | 0.0 | 604 |
| MS.gene83239.t1 | MTR_5g007717 | 87.730 | 326 | 40 | 0 | 1 | 326 | 64 | 389 | 0.0 | 602 |
| MS.gene83239.t1 | MTR_1g098140 | 88.037 | 326 | 39 | 0 | 1 | 326 | 64 | 389 | 0.0 | 602 |
| MS.gene83239.t1 | MTR_5g007760 | 87.730 | 326 | 40 | 0 | 1 | 326 | 64 | 389 | 0.0 | 600 |
| MS.gene83239.t1 | MTR_5g007730 | 87.423 | 326 | 41 | 0 | 1 | 326 | 64 | 389 | 0.0 | 599 |
| MS.gene83239.t1 | MTR_1g097935 | 87.730 | 326 | 40 | 0 | 1 | 326 | 64 | 389 | 0.0 | 599 |
| MS.gene83239.t1 | MTR_1g097910 | 87.423 | 326 | 41 | 0 | 1 | 326 | 64 | 389 | 0.0 | 598 |
| MS.gene83239.t1 | MTR_7g016820 | 87.423 | 326 | 41 | 0 | 1 | 326 | 64 | 389 | 0.0 | 598 |
| MS.gene83239.t1 | MTR_7g016800 | 87.117 | 326 | 42 | 0 | 1 | 326 | 64 | 389 | 0.0 | 597 |
| MS.gene83239.t1 | MTR_7g016700 | 87.117 | 326 | 42 | 0 | 1 | 326 | 64 | 389 | 0.0 | 596 |
| MS.gene83239.t1 | MTR_7g016720 | 87.423 | 326 | 41 | 0 | 1 | 326 | 64 | 389 | 0.0 | 596 |
| MS.gene83239.t1 | MTR_7g016780 | 86.503 | 326 | 44 | 0 | 1 | 326 | 64 | 389 | 0.0 | 593 |
| MS.gene83239.t1 | MTR_3g083910 | 85.846 | 325 | 46 | 0 | 1 | 325 | 64 | 388 | 0.0 | 592 |
| MS.gene83239.t1 | MTR_3g083920 | 85.538 | 325 | 47 | 0 | 1 | 325 | 64 | 388 | 0.0 | 583 |
| MS.gene83239.t1 | MTR_5g007740 | 80.982 | 326 | 62 | 0 | 1 | 326 | 1 | 326 | 0.0 | 555 |
| MS.gene83239.t1 | MTR_7g113405 | 86.799 | 303 | 40 | 0 | 24 | 326 | 1 | 303 | 0.0 | 547 |
| MS.gene83239.t1 | MTR_7g084300 | 76.687 | 326 | 76 | 0 | 1 | 326 | 64 | 389 | 0.0 | 539 |
| MS.gene83239.t1 | MTR_3g086260 | 77.538 | 325 | 73 | 0 | 1 | 325 | 64 | 388 | 0.0 | 532 |
| MS.gene83239.t1 | MTR_5g007723 | 72.393 | 326 | 62 | 2 | 1 | 326 | 101 | 398 | 4.23e-173 | 486 |
| MS.gene83239.t1 | MTR_3g088675 | 66.564 | 326 | 109 | 0 | 1 | 326 | 64 | 389 | 1.03e-170 | 479 |
| MS.gene83239.t1 | MTR_5g007770 | 73.667 | 300 | 46 | 2 | 7 | 306 | 1 | 267 | 1.12e-161 | 452 |
| MS.gene83239.t1 | MTR_3g088670 | 46.547 | 333 | 166 | 6 | 2 | 325 | 59 | 388 | 1.79e-97 | 293 |
| MS.gene83239.t1 | MTR_4g075560 | 42.945 | 326 | 180 | 3 | 2 | 324 | 66 | 388 | 2.32e-87 | 268 |
| MS.gene83239.t1 | MTR_4g078730 | 37.771 | 323 | 195 | 1 | 2 | 324 | 73 | 389 | 7.35e-81 | 251 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83239.t1 | AT5G13930 | 78.221 | 326 | 70 | 1 | 2 | 326 | 70 | 395 | 0.0 | 539 |
| MS.gene83239.t1 | AT4G34850 | 41.590 | 327 | 188 | 2 | 2 | 326 | 67 | 392 | 3.51e-83 | 257 |
| MS.gene83239.t1 | AT4G00040 | 40.615 | 325 | 186 | 3 | 2 | 324 | 66 | 385 | 5.96e-82 | 253 |
| MS.gene83239.t1 | AT4G34850 | 41.562 | 320 | 184 | 2 | 9 | 326 | 1 | 319 | 2.76e-81 | 249 |
| MS.gene83239.t1 | AT1G02050 | 41.718 | 326 | 181 | 4 | 2 | 324 | 73 | 392 | 4.69e-78 | 244 |
Find 75 sgRNAs with CRISPR-Local
Find 90 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTGGCCAACTTCGTGAATT+TGG | 0.160923 | 2.4:+34325223 | MS.gene83239:CDS |
| CACTTATATGGCACCTTCTT+TGG | 0.172541 | 2.4:+34324712 | MS.gene83239:CDS |
| GGTTTCTCAATTTCCGATAT+TGG | 0.174777 | 2.4:-34325142 | None:intergenic |
| CAAATAGCTCCTTCACTATT+TGG | 0.181538 | 2.4:-34325202 | None:intergenic |
| CTTGTTGGACAAGCTCTATT+TGG | 0.248042 | 2.4:+34325085 | MS.gene83239:CDS |
| AACCTATATTTGAGTTAGTT+TGG | 0.250346 | 2.4:+34325161 | MS.gene83239:CDS |
| GTTTCTCAATTTCCGATATT+GGG | 0.279843 | 2.4:-34325141 | None:intergenic |
| CTGATTACAACTCAATCTTT+TGG | 0.293179 | 2.4:+34325338 | MS.gene83239:CDS |
| TCCTAACTTGTGCACTTATA+TGG | 0.305354 | 2.4:+34324700 | MS.gene83239:CDS |
| TGGGGTGTGTTGTTGAGCTT+TGG | 0.341984 | 2.4:+34325559 | MS.gene83239:CDS |
| GTGGCCAACTTCGTGAATTT+GGG | 0.347414 | 2.4:+34325224 | MS.gene83239:CDS |
| ACTTCGCTTGGCCAAGGACT+TGG | 0.390660 | 2.4:+34324970 | MS.gene83239:CDS |
| CTTTCAAAATCTCTTCGGTT+AGG | 0.391659 | 2.4:-34324673 | None:intergenic |
| CCACAGGAGAAGGGCTTGAA+TGG | 0.391717 | 2.4:+34325539 | MS.gene83239:CDS |
| GCTGCCTCCTTTCCTAGTCT+TGG | 0.401265 | 2.4:-34324767 | None:intergenic |
| TTTGAGGCATTCCAACCATT+AGG | 0.405086 | 2.4:+34325310 | MS.gene83239:CDS |
| AAGTGTGTAATCTTTGACTT+TGG | 0.411995 | 2.4:-34324818 | None:intergenic |
| GGGGTGTGTTGTTGAGCTTT+GGG | 0.414213 | 2.4:+34325560 | MS.gene83239:CDS |
| GTGGAGAACAATTGTTTCAA+TGG | 0.418548 | 2.4:-34325593 | None:intergenic |
| ATATTCTTTGAGACAATGTC+TGG | 0.420813 | 2.4:-34325274 | None:intergenic |
| CACCTGCAAAACACCCTTGT+TGG | 0.425276 | 2.4:-34324940 | None:intergenic |
| GGAGCTGCTGCAGTCATTGT+TGG | 0.438081 | 2.4:+34325112 | MS.gene83239:CDS |
| GTTGTTCTCAGCCAAGTCCT+TGG | 0.439745 | 2.4:-34324981 | None:intergenic |
| TGTTGGCTCTGACCCAATAT+CGG | 0.439751 | 2.4:+34325129 | MS.gene83239:CDS |
| GTCCAAACTAACTCAAATAT+AGG | 0.440683 | 2.4:-34325163 | None:intergenic |
| ATTCTCTTTCAAAATCTCTT+CGG | 0.446047 | 2.4:-34324678 | None:intergenic |
| TGTGAAGGCTATAAAAGAAT+GGG | 0.452730 | 2.4:+34324790 | MS.gene83239:CDS |
| TTACCAACTCACAAAACTCT+TGG | 0.454437 | 2.4:+34324883 | MS.gene83239:CDS |
| GTGTTGTTGAGCTTTGGGCC+AGG | 0.455664 | 2.4:+34325565 | MS.gene83239:CDS |
| CACAGGAGAAGGGCTTGAAT+GGG | 0.458193 | 2.4:+34325540 | MS.gene83239:CDS |
| ACTCACTTAGACAACCTTGT+TGG | 0.459568 | 2.4:+34325070 | MS.gene83239:CDS |
| TGGCACCTTCTTTGGATGCT+AGG | 0.461307 | 2.4:+34324720 | MS.gene83239:CDS |
| TATTGATAATGCATTGTTTG+AGG | 0.469363 | 2.4:+34325294 | MS.gene83239:CDS |
| GCCATATAAGTGCACAAGTT+AGG | 0.475494 | 2.4:-34324701 | None:intergenic |
| AGATGAGATGAGAAACAAAT+CGG | 0.494775 | 2.4:+34325498 | MS.gene83239:CDS |
| CTGTGAAGGCTATAAAAGAA+TGG | 0.495251 | 2.4:+34324789 | MS.gene83239:CDS |
| AGGTGGCACGGTACTTCGCT+TGG | 0.499760 | 2.4:+34324958 | MS.gene83239:CDS |
| TACCAACTCACAAAACTCTT+GGG | 0.501320 | 2.4:+34324884 | MS.gene83239:CDS |
| TTGTAATCAGAAATACCTAA+TGG | 0.510983 | 2.4:-34325325 | None:intergenic |
| GTGTAATCTTTGACTTTGGT+TGG | 0.515155 | 2.4:-34324814 | None:intergenic |
| ATAGCCCAAATTCACGAAGT+TGG | 0.518458 | 2.4:-34325228 | None:intergenic |
| GTGAGTTGGTAATCGGCACC+AGG | 0.519680 | 2.4:-34324872 | None:intergenic |
| GCTATCATTTCATCTTCGTA+AGG | 0.524043 | 2.4:+34325246 | MS.gene83239:CDS |
| CACGGTACTTCGCTTGGCCA+AGG | 0.526116 | 2.4:+34324964 | MS.gene83239:CDS |
| GGACTAAAGACCACAGGAGA+AGG | 0.532044 | 2.4:+34325529 | MS.gene83239:CDS |
| GTCTTCGCCCATATGTGAAA+AGG | 0.532629 | 2.4:+34324906 | MS.gene83239:CDS |
| CAACAAAGATTCTCGTGTGT+TGG | 0.533214 | 2.4:+34325000 | MS.gene83239:CDS |
| AGGAAAGGAGGCAGCTGTGA+AGG | 0.533368 | 2.4:+34324775 | MS.gene83239:CDS |
| AATCAGAAATACCTAATGGT+TGG | 0.535986 | 2.4:-34325321 | None:intergenic |
| ATTGTTTCAATGGTAAGTCC+TGG | 0.536015 | 2.4:-34325583 | None:intergenic |
| TTGTCTAAGTGAGTATCGCT+AGG | 0.540677 | 2.4:-34325061 | None:intergenic |
| AATAGTGAAGGAGCTATTTG+TGG | 0.543719 | 2.4:+34325205 | MS.gene83239:CDS |
| GGACAAGCTCTATTTGGAGA+TGG | 0.551435 | 2.4:+34325091 | MS.gene83239:CDS |
| AGAGGCACCAAGACTAGGAA+AGG | 0.552572 | 2.4:+34324760 | MS.gene83239:CDS |
| CCATTCAAGCCCTTCTCCTG+TGG | 0.556018 | 2.4:-34325539 | None:intergenic |
| AGAAACAAATCGGCTCAAGA+TGG | 0.558289 | 2.4:+34325508 | MS.gene83239:CDS |
| GCAAGACATGGTGGTAGTAG+AGG | 0.561217 | 2.4:+34324742 | MS.gene83239:CDS |
| GTAGTAGAGGCACCAAGACT+AGG | 0.561904 | 2.4:+34324755 | MS.gene83239:CDS |
| CAAATAGAGCTTGTCCAACA+AGG | 0.563164 | 2.4:-34325084 | None:intergenic |
| GTGATAAAACTATGATCAAG+AGG | 0.578175 | 2.4:+34324639 | None:intergenic |
| TCTTGCCTAGCATCCAAAGA+AGG | 0.579296 | 2.4:-34324725 | None:intergenic |
| TTTGGATGCTAGGCAAGACA+TGG | 0.608195 | 2.4:+34324730 | MS.gene83239:CDS |
| CAAGATGGACTAAAGACCAC+AGG | 0.629908 | 2.4:+34325523 | MS.gene83239:CDS |
| GACTAAAGACCACAGGAGAA+GGG | 0.630311 | 2.4:+34325530 | MS.gene83239:CDS |
| GGTATATGATGTACCAACAA+GGG | 0.634634 | 2.4:+34324927 | MS.gene83239:CDS |
| GGCACCAAGACTAGGAAAGG+AGG | 0.637670 | 2.4:+34324763 | MS.gene83239:CDS |
| TGTCTAAGTGAGTATCGCTA+GGG | 0.638735 | 2.4:-34325060 | None:intergenic |
| ATAAGTGGTGTAGATATGCC+TGG | 0.639172 | 2.4:+34324854 | MS.gene83239:CDS |
| AGGTATATGATGTACCAACA+AGG | 0.648772 | 2.4:+34324926 | MS.gene83239:CDS |
| ACAATCGCTCCAAATAGTGA+AGG | 0.649422 | 2.4:+34325193 | MS.gene83239:CDS |
| ACAGGAGAAGGGCTTGAATG+GGG | 0.664347 | 2.4:+34325541 | MS.gene83239:CDS |
| GTGAAGGCTATAAAAGAATG+GGG | 0.674266 | 2.4:+34324791 | MS.gene83239:CDS |
| GGATGCTAGGCAAGACATGG+TGG | 0.683391 | 2.4:+34324733 | MS.gene83239:CDS |
| AACAATTGTTCTCCACAGTG+TGG | 0.687046 | 2.4:+34325600 | MS.gene83239:CDS |
| CATATCATATAGCCACACTG+TGG | 0.742537 | 2.4:-34325612 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAATATTTTGCACTATAAG+TGG | + | chr2.4:34324839-34324858 | MS.gene83239:CDS | 20.0% |
| ! | AGAAAAATGCTTAGTGAATA+TGG | + | chr2.4:34325442-34325461 | MS.gene83239:CDS | 25.0% |
| ! | ATTCTCTTTCAAAATCTCTT+CGG | - | chr2.4:34324681-34324700 | None:intergenic | 25.0% |
| ! | TTGTAATCAGAAATACCTAA+TGG | - | chr2.4:34325328-34325347 | None:intergenic | 25.0% |
| !! | AACCTATATTTGAGTTAGTT+TGG | + | chr2.4:34325161-34325180 | MS.gene83239:CDS | 25.0% |
| !! | ATCATATACCTTTTCACATA+TGG | - | chr2.4:34324917-34324936 | None:intergenic | 25.0% |
| !! | TCATATACCTTTTCACATAT+GGG | - | chr2.4:34324916-34324935 | None:intergenic | 25.0% |
| !!! | TATTGATAATGCATTGTTTG+AGG | + | chr2.4:34325294-34325313 | MS.gene83239:CDS | 25.0% |
| AATCAGAAATACCTAATGGT+TGG | - | chr2.4:34325324-34325343 | None:intergenic | 30.0% | |
| AGATGAGATGAGAAACAAAT+CGG | + | chr2.4:34325498-34325517 | MS.gene83239:CDS | 30.0% | |
| GTCCAAACTAACTCAAATAT+AGG | - | chr2.4:34325166-34325185 | None:intergenic | 30.0% | |
| GTTTCTCAATTTCCGATATT+GGG | - | chr2.4:34325144-34325163 | None:intergenic | 30.0% | |
| TGTGAAGGCTATAAAAGAAT+GGG | + | chr2.4:34324790-34324809 | MS.gene83239:CDS | 30.0% | |
| ! | AAGTGTGTAATCTTTGACTT+TGG | - | chr2.4:34324821-34324840 | None:intergenic | 30.0% |
| ! | ATTACTGCAATCACATTTTG+TGG | + | chr2.4:34325037-34325056 | MS.gene83239:CDS | 30.0% |
| ! | CTCAATTTTGTCTAGTATTG+CGG | - | chr2.4:34325383-34325402 | None:intergenic | 30.0% |
| ! | CTGATTACAACTCAATCTTT+TGG | + | chr2.4:34325338-34325357 | MS.gene83239:CDS | 30.0% |
| ! | TCAATTTTGTCTAGTATTGC+GGG | - | chr2.4:34325382-34325401 | None:intergenic | 30.0% |
| ! | TTCACTAAGCATTTTTCTAG+TGG | - | chr2.4:34325440-34325459 | None:intergenic | 30.0% |
| !! | ATATTCTTTGAGACAATGTC+TGG | - | chr2.4:34325277-34325296 | None:intergenic | 30.0% |
| AATAGTGAAGGAGCTATTTG+TGG | + | chr2.4:34325205-34325224 | MS.gene83239:CDS | 35.0% | |
| AGGTATATGATGTACCAACA+AGG | + | chr2.4:34324926-34324945 | MS.gene83239:CDS | 35.0% | |
| ATTGTTTCAATGGTAAGTCC+TGG | - | chr2.4:34325586-34325605 | None:intergenic | 35.0% | |
| CAAATAGCTCCTTCACTATT+TGG | - | chr2.4:34325205-34325224 | None:intergenic | 35.0% | |
| CTGTGAAGGCTATAAAAGAA+TGG | + | chr2.4:34324789-34324808 | MS.gene83239:CDS | 35.0% | |
| CTTTCAAAATCTCTTCGGTT+AGG | - | chr2.4:34324676-34324695 | None:intergenic | 35.0% | |
| GCTATCATTTCATCTTCGTA+AGG | + | chr2.4:34325246-34325265 | MS.gene83239:CDS | 35.0% | |
| GGTATATGATGTACCAACAA+GGG | + | chr2.4:34324927-34324946 | MS.gene83239:CDS | 35.0% | |
| GGTTTCTCAATTTCCGATAT+TGG | - | chr2.4:34325145-34325164 | None:intergenic | 35.0% | |
| GTGAAGGCTATAAAAGAATG+GGG | + | chr2.4:34324791-34324810 | MS.gene83239:CDS | 35.0% | |
| GTGGAGAACAATTGTTTCAA+TGG | - | chr2.4:34325596-34325615 | None:intergenic | 35.0% | |
| TACCAACTCACAAAACTCTT+GGG | + | chr2.4:34324884-34324903 | MS.gene83239:CDS | 35.0% | |
| TTACCAACTCACAAAACTCT+TGG | + | chr2.4:34324883-34324902 | MS.gene83239:CDS | 35.0% | |
| ! | GTGTAATCTTTGACTTTGGT+TGG | - | chr2.4:34324817-34324836 | None:intergenic | 35.0% |
| ! | TCCTAACTTGTGCACTTATA+TGG | + | chr2.4:34324700-34324719 | MS.gene83239:CDS | 35.0% |
| !!! | ACTCATCTTTTCAGGTTTCA+AGG | - | chr2.4:34325416-34325435 | None:intergenic | 35.0% |
| !!! | GAGTTTTGTGAGTTGGTAAT+CGG | - | chr2.4:34324882-34324901 | None:intergenic | 35.0% |
| AACAATTGTTCTCCACAGTG+TGG | + | chr2.4:34325600-34325619 | MS.gene83239:CDS | 40.0% | |
| ACAATCGCTCCAAATAGTGA+AGG | + | chr2.4:34325193-34325212 | MS.gene83239:CDS | 40.0% | |
| ACTCACTTAGACAACCTTGT+TGG | + | chr2.4:34325070-34325089 | MS.gene83239:CDS | 40.0% | |
| ATAAGTGGTGTAGATATGCC+TGG | + | chr2.4:34324854-34324873 | MS.gene83239:CDS | 40.0% | |
| ATAGCCCAAATTCACGAAGT+TGG | - | chr2.4:34325231-34325250 | None:intergenic | 40.0% | |
| CAAATAGAGCTTGTCCAACA+AGG | - | chr2.4:34325087-34325106 | None:intergenic | 40.0% | |
| CAACAAAGATTCTCGTGTGT+TGG | + | chr2.4:34325000-34325019 | MS.gene83239:CDS | 40.0% | |
| CACTTATATGGCACCTTCTT+TGG | + | chr2.4:34324712-34324731 | MS.gene83239:CDS | 40.0% | |
| CTTGTTGGACAAGCTCTATT+TGG | + | chr2.4:34325085-34325104 | MS.gene83239:CDS | 40.0% | |
| GCCATATAAGTGCACAAGTT+AGG | - | chr2.4:34324704-34324723 | None:intergenic | 40.0% | |
| ! | AGAAACAAATCGGCTCAAGA+TGG | + | chr2.4:34325508-34325527 | MS.gene83239:CDS | 40.0% |
| ! | ATCTTTTGGATTGCTCACTC+TGG | + | chr2.4:34325352-34325371 | MS.gene83239:CDS | 40.0% |
| ! | TGTCTAAGTGAGTATCGCTA+GGG | - | chr2.4:34325063-34325082 | None:intergenic | 40.0% |
| ! | TTGTCTAAGTGAGTATCGCT+AGG | - | chr2.4:34325064-34325083 | None:intergenic | 40.0% |
| ! | TTTGAGGCATTCCAACCATT+AGG | + | chr2.4:34325310-34325329 | MS.gene83239:CDS | 40.0% |
| GACTAAAGACCACAGGAGAA+GGG | + | chr2.4:34325530-34325549 | MS.gene83239:CDS | 45.0% | |
| GGACAAGCTCTATTTGGAGA+TGG | + | chr2.4:34325091-34325110 | MS.gene83239:CDS | 45.0% | |
| GTCTTCGCCCATATGTGAAA+AGG | + | chr2.4:34324906-34324925 | MS.gene83239:CDS | 45.0% | |
| GTGGCCAACTTCGTGAATTT+GGG | + | chr2.4:34325224-34325243 | MS.gene83239:CDS | 45.0% | |
| TCTTGCCTAGCATCCAAAGA+AGG | - | chr2.4:34324728-34324747 | None:intergenic | 45.0% | |
| TGTGGCCAACTTCGTGAATT+TGG | + | chr2.4:34325223-34325242 | MS.gene83239:CDS | 45.0% | |
| TTTGGATGCTAGGCAAGACA+TGG | + | chr2.4:34324730-34324749 | MS.gene83239:CDS | 45.0% | |
| ! | CTAGTGGCACTCATCTTTTC+AGG | - | chr2.4:34325424-34325443 | None:intergenic | 45.0% |
| ! | TTTTGGATTGCTCACTCTGG+TGG | + | chr2.4:34325355-34325374 | MS.gene83239:CDS | 45.0% |
| !! | CAAGATGGACTAAAGACCAC+AGG | + | chr2.4:34325523-34325542 | MS.gene83239:CDS | 45.0% |
| !! | GACCCAAGAGTTTTGTGAGT+TGG | - | chr2.4:34324889-34324908 | None:intergenic | 45.0% |
| !! | TGTTGGCTCTGACCCAATAT+CGG | + | chr2.4:34325129-34325148 | MS.gene83239:CDS | 45.0% |
| !!! | TACCAACAAGGGTGTTTTGC+AGG | + | chr2.4:34324938-34324957 | MS.gene83239:CDS | 45.0% |
| ACAGGAGAAGGGCTTGAATG+GGG | + | chr2.4:34325541-34325560 | MS.gene83239:CDS | 50.0% | |
| CACAGGAGAAGGGCTTGAAT+GGG | + | chr2.4:34325540-34325559 | MS.gene83239:CDS | 50.0% | |
| CACCTGCAAAACACCCTTGT+TGG | - | chr2.4:34324943-34324962 | None:intergenic | 50.0% | |
| GCAAGACATGGTGGTAGTAG+AGG | + | chr2.4:34324742-34324761 | MS.gene83239:CDS | 50.0% | |
| GGACTAAAGACCACAGGAGA+AGG | + | chr2.4:34325529-34325548 | MS.gene83239:CDS | 50.0% | |
| GTTGTTCTCAGCCAAGTCCT+TGG | - | chr2.4:34324984-34325003 | None:intergenic | 50.0% | |
| TGGCACCTTCTTTGGATGCT+AGG | + | chr2.4:34324720-34324739 | MS.gene83239:CDS | 50.0% | |
| ! | GGGGTGTGTTGTTGAGCTTT+GGG | + | chr2.4:34325560-34325579 | MS.gene83239:CDS | 50.0% |
| ! | TGGGGTGTGTTGTTGAGCTT+TGG | + | chr2.4:34325559-34325578 | MS.gene83239:CDS | 50.0% |
| !! | AGAGGCACCAAGACTAGGAA+AGG | + | chr2.4:34324760-34324779 | MS.gene83239:CDS | 50.0% |
| !! | GTAGTAGAGGCACCAAGACT+AGG | + | chr2.4:34324755-34324774 | MS.gene83239:CDS | 50.0% |
| !!! | CAACAAGGGTGTTTTGCAGG+TGG | + | chr2.4:34324941-34324960 | MS.gene83239:CDS | 50.0% |
| ACTTCGCTTGGCCAAGGACT+TGG | + | chr2.4:34324970-34324989 | MS.gene83239:CDS | 55.0% | |
| AGGAAAGGAGGCAGCTGTGA+AGG | + | chr2.4:34324775-34324794 | MS.gene83239:CDS | 55.0% | |
| CCACAGGAGAAGGGCTTGAA+TGG | + | chr2.4:34325539-34325558 | MS.gene83239:CDS | 55.0% | |
| CCATTCAAGCCCTTCTCCTG+TGG | - | chr2.4:34325542-34325561 | None:intergenic | 55.0% | |
| GCTGCCTCCTTTCCTAGTCT+TGG | - | chr2.4:34324770-34324789 | None:intergenic | 55.0% | |
| GGAGCTGCTGCAGTCATTGT+TGG | + | chr2.4:34325112-34325131 | MS.gene83239:CDS | 55.0% | |
| GGATGCTAGGCAAGACATGG+TGG | + | chr2.4:34324733-34324752 | MS.gene83239:CDS | 55.0% | |
| GGCACCAAGACTAGGAAAGG+AGG | + | chr2.4:34324763-34324782 | MS.gene83239:CDS | 55.0% | |
| !! | AGGGTGTTTTGCAGGTGGCA+CGG | + | chr2.4:34324946-34324965 | MS.gene83239:CDS | 55.0% |
| !! | GTGAGTTGGTAATCGGCACC+AGG | - | chr2.4:34324875-34324894 | None:intergenic | 55.0% |
| !! | GTGTTGTTGAGCTTTGGGCC+AGG | + | chr2.4:34325565-34325584 | MS.gene83239:CDS | 55.0% |
| AGGTGGCACGGTACTTCGCT+TGG | + | chr2.4:34324958-34324977 | MS.gene83239:CDS | 60.0% | |
| CACGGTACTTCGCTTGGCCA+AGG | + | chr2.4:34324964-34324983 | MS.gene83239:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.4 | gene | 34324650 | 34325630 | 34324650 | ID=MS.gene83239 |
| chr2.4 | mRNA | 34324650 | 34325630 | 34324650 | ID=MS.gene83239.t1;Parent=MS.gene83239 |
| chr2.4 | exon | 34324650 | 34325630 | 34324650 | ID=MS.gene83239.t1.exon1;Parent=MS.gene83239.t1 |
| chr2.4 | CDS | 34324650 | 34325630 | 34324650 | ID=cds.MS.gene83239.t1;Parent=MS.gene83239.t1 |
| Gene Sequence |
| Protein sequence |
