AlfalfaGEDB | MS.gene83521

M. sativa cultivar XinJiangDaYe / MS.gene83521

KEGG: K19600
GO: -
PFAM: PF01167.21

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene83521.t1	XP_013465630.1	84.3	381	11	8	1	352	1	361	5.90E-169	603.6

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene83521.t1	Q9S9M8	54.4	329	119	7	50	352	74	397	3.0e-89	330.1

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene83521.t1	G7ZYZ4	84.3	381	11	8	1	352	1	361	4.2e-169	603.6

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
MS.gene83521.t1	TF	TUB

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene052308	MS.gene83521	0.815404	9.41E-52	-1.69E-46
MS.gene052367	MS.gene83521	0.814753	1.31E-51	-1.69E-46
MS.gene054593	MS.gene83521	0.802294	6.01E-49	-1.69E-46
MS.gene055308	MS.gene83521	0.801959	7.04E-49	-1.69E-46
MS.gene055578	MS.gene83521	0.804554	2.04E-49	-1.69E-46
MS.gene056041	MS.gene83521	0.831268	1.84E-55	-1.69E-46
MS.gene05640	MS.gene83521	0.804673	1.93E-49	-1.69E-46
MS.gene057458	MS.gene83521	0.81743	3.31E-52	-1.69E-46
MS.gene058853	MS.gene83521	0.800193	1.62E-48	-1.69E-46
MS.gene059553	MS.gene83521	0.816824	4.53E-52	-1.69E-46

Showing 1 to 10 of 15 entries

Previous1 2Next

PPI:

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene83521.t1	MTR_2g105390	83.465	381	14	7	1	352	1	361	0.0	600
MS.gene83521.t1	MTR_1g022370	28.102	274	130	12	131	350	161	421	2.28e-14	74.3
MS.gene83521.t1	MTR_2g020280	53.226	62	22	2	296	350	232	293	8.50e-13	68.6
MS.gene83521.t1	MTR_2g020280	53.226	62	22	2	296	350	331	392	1.21e-12	68.9
MS.gene83521.t1	MTR_1g088960	50.000	62	24	1	296	350	340	401	1.84e-12	68.2
MS.gene83521.t1	MTR_2g007930	40.909	110	44	5	256	350	323	426	4.09e-12	67.4
MS.gene83521.t1	MTR_5g020580	38.947	95	44	3	265	350	326	415	7.49e-12	66.6
MS.gene83521.t1	MTR_8g077195	36.697	109	54	4	251	350	309	411	1.82e-11	65.5
MS.gene83521.t1	MTR_1g098790	36.207	116	47	4	256	350	321	430	2.50e-11	65.1

Showing 1 to 9 of 9 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene83521.t1	AT1G16070	54.407	329	119	7	50	352	74	397	3.63e-118	347
MS.gene83521.t1	AT1G16070	51.957	281	104	7	50	304	74	349	2.91e-88	270
MS.gene83521.t1	AT1G16070	50.450	222	79	7	50	245	74	290	2.47e-63	204
MS.gene83521.t1	AT2G18280	27.132	258	134	8	138	350	144	392	2.32e-15	77.0
MS.gene83521.t1	AT2G18280	27.132	258	134	8	138	350	144	392	2.32e-15	77.0
MS.gene83521.t1	AT1G47270	26.792	265	137	11	131	350	160	412	1.46e-12	68.6
MS.gene83521.t1	AT1G47270	26.792	265	137	11	131	350	135	387	1.51e-12	68.6
MS.gene83521.t1	AT1G47270	26.792	265	137	11	131	350	159	411	1.59e-12	68.6
MS.gene83521.t1	AT2G47900	53.226	62	22	2	296	350	345	406	1.78e-12	68.6
MS.gene83521.t1	AT2G47900	53.226	62	22	2	296	350	344	405	1.83e-12	68.6

Showing 1 to 10 of 15 entries

Previous1 2Next

Find 99 sgRNAs with CRISPR-Local

Find 164 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACATACGACCAAGGGTT+TGG	0.409386	2.2:-324839	None:intergenic
AAACTTTCAACTCACGTTAG+AGG	0.308085	2.2:+326169	MS.gene83521:CDS
AAAGACATAGATTGATGATT+GGG	0.409134	2.2:-325734	None:intergenic
AAAGTAGACCAGGAGGAAGC+AGG	0.520011	2.2:-325113	None:intergenic
AAATACCACATTTGGGATCA+GGG	0.518347	2.2:+325526	MS.gene83521:CDS
AAGAGGTGGTTTACTACTGC+GGG	0.474800	2.2:-325566	None:intergenic
AAGCAGACAATCCTGCAGCT+AGG	0.533935	2.2:+326298	MS.gene83521:CDS
AAGGCCTGGTAACCAGTCAA+AGG	0.614442	2.2:-326455	None:intergenic
AAGGGATCCACTCTATAACA+AGG	0.674607	2.2:+325976	MS.gene83521:CDS
AAGGTCAGGGACGGCAGAAT+AGG	0.479149	2.2:+325362	MS.gene83521:intron

Showing 1 to 10 of 99 entries

Previous1 2 3 4 5…10Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AATGAATTGGGAAGGAAAAA+TGG	+	chr2.2:325931-325950	MS.gene83521:CDS	30.0%
ATCATCATCATCATCAGAAT+TGG	-	chr2.2:325467-325486	None:intergenic	30.0%
ATTATTATTGTAGGAAGGTC+AGG	+	chr2.2:325348-325367	MS.gene83521:intron	30.0%
ATTTGAAAACATACGACCAA+GGG	-	chr2.2:324847-324866	None:intergenic	30.0%
GAAAATCAATATCAATGGCT+TGG	-	chr2.2:326049-326068	None:intergenic	30.0%
GAAAATGAATCTAACTAACC+TGG	-	chr2.2:325772-325791	None:intergenic	30.0%
GGTATAAAGAGAGAAGAAAT+TGG	-	chr2.2:325237-325256	None:intergenic	30.0%
TATAACATAAAAACCCTTCC+GGG	-	chr2.2:326215-326234	None:intergenic	30.0%
TCTACATATCAAAGACTTGT+TGG	-	chr2.2:325141-325160	None:intergenic	30.0%
TTATTATTGTAGGAAGGTCA+GGG	+	chr2.2:325349-325368	MS.gene83521:intron	30.0%

Showing 1 to 10 of 164 entries

Previous1 2 3 4 5…17Next

Chromosome	Type	Strat	End	Strand	Name
chr2.2	gene	324822	326526	324822	ID=MS.gene83521
chr2.2	mRNA	324822	326526	324822	ID=MS.gene83521.t1;Parent=MS.gene83521
chr2.2	exon	324822	325221	324822	ID=MS.gene83521.t1.exon1;Parent=MS.gene83521.t1
chr2.2	CDS	324822	325221	324822	ID=cds.MS.gene83521.t1;Parent=MS.gene83521.t1
chr2.2	exon	325365	325599	325365	ID=MS.gene83521.t1.exon2;Parent=MS.gene83521.t1
chr2.2	CDS	325365	325599	325365	ID=cds.MS.gene83521.t1;Parent=MS.gene83521.t1
chr2.2	exon	325676	325772	325676	ID=MS.gene83521.t1.exon3;Parent=MS.gene83521.t1
chr2.2	CDS	325676	325772	325676	ID=cds.MS.gene83521.t1;Parent=MS.gene83521.t1
chr2.2	exon	325908	325997	325908	ID=MS.gene83521.t1.exon4;Parent=MS.gene83521.t1
chr2.2	CDS	325908	325997	325908	ID=cds.MS.gene83521.t1;Parent=MS.gene83521.t1
chr2.2	exon	326098	326190	326098	ID=MS.gene83521.t1.exon5;Parent=MS.gene83521.t1
chr2.2	CDS	326098	326190	326098	ID=cds.MS.gene83521.t1;Parent=MS.gene83521.t1
chr2.2	exon	326289	326356	326289	ID=MS.gene83521.t1.exon6;Parent=MS.gene83521.t1
chr2.2	CDS	326289	326356	326289	ID=cds.MS.gene83521.t1;Parent=MS.gene83521.t1
chr2.2	exon	326451	326526	326451	ID=MS.gene83521.t1.exon7;Parent=MS.gene83521.t1
chr2.2	CDS	326451	326526	326451	ID=cds.MS.gene83521.t1;Parent=MS.gene83521.t1

Gene Sequence

>MS.gene83521

ATGAAGAAAAACCAAAACCAAACCCTTGGTCGTATGTTTTCAAATCCCCTCAGCGAGATTGACACCAACGTTCAGCTGAGGCATAGTCGTAGCTGCAGCAACAAGAACAAGGAAAATGCCAATGTTGTTTCTCTTCCAAAATCCAACTCATTTTCAACAAACACGAGGATTCTTAAGCCTTCCTCATTACAGTTCTGCATGCAAATCAACGATCCTATTCCTTCTTCTGATTCTTCCCACTTTTCCAGCTCTTTGAAAATTTGGGACCACTCCGACTCTGAAGCTGCTGCTCCTGCTTCCTCCTGGTCTACTTTACCCAACAAGTCTTTGATATGTAGACCATTGCCTATAGATATTGGAAGGTGTACTTGTGTTATTGTTAAGGAACCAACTCCTCAGGGTCTCTCCGGTCCCAATTTCTTCTCTCTTTATACCTATGTATGTAATGTATTATATTATTCACTACCATTCTATTCTATTCTATGTATAATATAATATCACTTTGCTATTTAATCAACATATTATTATTATTATTGTAGGAAGGTCAGGGACGGCAGAATAGGAAACTGGCTGTGGCCCACCACAAGCGCCGGAGTGGGAGGTCTCACTTCACAGTAGCTCAGAATCTCAAAGGACTACTCTCCAATTCTGATGATGATGATGATACTTTTCTCGGTACAGTTACCGCTAACCTCACCGGTTCGAAATACCACATTTGGGATCAGGGATATCATCGCCATAAGCCCCGCAGTAGTAAACCACCTCTTGCTGTTGTTGAGTAAGCCTAAATCTCTCAATCTCCACCTGGCCTGGCCGCCTCATTCTTCTCTGCTAACTAGTACATCATTTTGCAGGTATGTACCTACAATAGCAACATGTACAGGAACTCACAGAAGCATCAAAGCTTATATACCCAATCATCAATCTATGTCTTTCAAGAACACCAACCAGGTTAGTTAGATTCATTTTCAATAATATCATGAATCATGATCACATCTACTGTGTCGTCAGTCTGCATACTCACATTGTTTACAGTTCAATTACAACAATATCTCTTTATTACTAACAATAAAATTGGGGGTTCAGGTACAACACATTAAGGGACTGCCAATGAATTGGGAAGGAAAAATGGACAAAGTGCATCAACTATTCTCAAGGGATCCACTCTATAACAAGGTAGGAGGAGCCTCACTTAGGGGAAGTTTCTTTGTCATTTATAGCTAGCCAAGCCATTGATATTGATTTTCATTAATTTGTATTGTCTTCCTTCATCAAGAGTACAAAGCAATTTGAGCTTGACTATAGAGATAAAGGAAGGCCAGGACTTGGAATCCAGAGATCCGTTAAAAACTTTCAACTCACGTTAGAGGTAACATCATTGACGCGGGAACCCGGAAGGGTTTTTATGTTATAACAACTCGGTTAGTTATGTTGTCTACTTAGCTGATTTGTGTTTGCTATGATTAGGAGAATGGGAAGCAGACAATCCTGCAGCTAGGGAGGGTAGGAAAATCTAATTTTGTTATGGACTACAGGTATCAATTCAAATTTTTCTTGTTTTATTGACCTTAATGTGTTTTGAAGAGGCGGGGTTTCATAGCCAGTACCATTTCCTCTGTCAATCTGCAGATATCCTTTGACTGGTTACCAGGCCTTTTGCATATGTTTGGCTTCCATTGATGCAAAGCTTTGTTGCATAGTGTAG

Protein sequence

>MS.gene83521.t1

MKKNQNQTLGRMFSNPLSEIDTNVQLRHSRSCSNKNKENANVVSLPKSNSFSTNTRILKPSSLQFCMQINDPIPSSDSSHFSSSLKIWDHSDSEAAAPASSWSTLPNKSLICRPLPIDIGRCTCVIVKEPTPQGQGRQNRKLAVAHHKRRSGRSHFTVAQNLKGLLSNSDDDDDTFLGTVTANLTGSKYHIWDQGYHRHKPRSSKPPLAVVEYVPTIATCTGTHRSIKAYIPNHQSMSFKNTNQVQHIKGLPMNWEGKMDKVHQLFSRDPLYNKSTKQFELDYRDKGRPGLGIQRSVKNFQLTLEENGKQTILQLGRVGKSNFVMDYRYPLTGYQAFCICLASIDAKLCCIV