AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene83579

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene83579.t1 MTR_2g104490 91.003 289 22 4 1 288 1 286 0.0 524
MS.gene83579.t1 MTR_2g104490 91.003 289 22 4 1 288 1 286 0.0 524
MS.gene83579.t1 MTR_2g104550 79.932 294 49 6 1 288 1 290 2.03e-155 437
MS.gene83579.t1 MTR_4g009540 42.249 329 129 10 1 288 1 309 1.13e-65 208
MS.gene83579.t1 MTR_4g009540 42.249 329 129 10 1 288 1 309 1.95e-65 208
MS.gene83579.t1 MTR_4g009110 42.433 337 136 10 1 288 1 328 7.74e-64 205
MS.gene83579.t1 MTR_8g009020 48.649 222 101 6 76 288 84 301 3.52e-51 172
MS.gene83579.t1 MTR_7g080780 36.792 318 160 6 1 288 1 307 1.44e-48 165
MS.gene83579.t1 MTR_2g104500 40.741 270 133 6 23 288 4 250 2.72e-48 162
MS.gene83579.t1 MTR_7g080780 36.877 301 151 5 18 288 3 294 1.04e-46 160
MS.gene83579.t1 MTR_8g069740 39.146 281 141 10 25 292 6 269 5.19e-44 151
MS.gene83579.t1 MTR_8g009010 39.855 276 112 9 31 288 11 250 3.98e-41 145
MS.gene83579.t1 MTR_2g104530 47.283 184 91 3 108 288 72 252 5.25e-40 141
MS.gene83579.t1 MTR_5g014600 38.676 287 126 11 41 288 38 313 6.47e-39 140
MS.gene83579.t1 MTR_5g014520 41.441 222 101 5 81 288 102 308 7.19e-39 139
MS.gene83579.t1 MTR_6g047570 39.300 257 129 9 44 288 69 310 8.61e-36 131
MS.gene83579.t1 MTR_0246s0020 38.819 237 119 6 81 292 122 357 5.37e-35 130
MS.gene83579.t1 MTR_0246s0020 39.056 233 116 6 81 288 122 353 1.60e-34 129
MS.gene83579.t1 MTR_4g067010 40.741 189 105 3 105 288 109 295 4.25e-34 127
MS.gene83579.t1 MTR_0250s0040 42.690 171 92 4 122 288 71 239 1.93e-33 124
MS.gene83579.t1 MTR_0011s0260 40.196 204 110 4 96 288 132 334 2.83e-33 125
MS.gene83579.t1 MTR_2g104560 42.857 175 86 3 121 288 36 203 1.20e-32 120
MS.gene83579.t1 MTR_4g066460 37.083 240 132 6 58 288 74 303 1.23e-32 123
MS.gene83579.t1 MTR_2g010450 46.875 160 76 3 135 288 173 329 2.99e-32 122
MS.gene83579.t1 MTR_4g092700 40.217 184 106 2 109 288 126 309 7.41e-32 121
MS.gene83579.t1 MTR_0011s0210 40.196 204 110 4 96 288 132 334 8.78e-32 121
MS.gene83579.t1 MTR_5g014640 34.043 235 143 5 69 299 87 313 2.45e-31 119
MS.gene83579.t1 MTR_4g097940 43.023 172 88 4 122 288 138 304 1.48e-30 117
MS.gene83579.t1 MTR_4g097920 42.442 172 89 4 122 288 123 289 7.79e-30 115
MS.gene83579.t1 MTR_4g097920 42.442 172 89 4 122 288 138 304 9.97e-30 115
MS.gene83579.t1 MTR_2g104650 33.818 275 142 9 23 288 4 247 1.46e-29 114
MS.gene83579.t1 MTR_5g014560 42.690 171 92 3 122 288 114 282 2.48e-28 111
MS.gene83579.t1 MTR_4g097950 38.265 196 109 2 105 288 33 228 7.67e-28 108
MS.gene83579.t1 MTR_2g104590 36.190 210 109 6 84 288 13 202 1.03e-27 107
MS.gene83579.t1 MTR_4g066380 36.325 234 131 6 58 288 82 300 2.91e-27 108
MS.gene83579.t1 MTR_0246s0050 38.182 165 93 3 126 288 138 295 1.34e-26 107
MS.gene83579.t1 MTR_4g098035 38.182 165 93 3 126 288 159 316 1.57e-26 107
MS.gene83579.t1 MTR_7g451650 43.077 130 60 2 162 288 57 175 4.59e-22 91.7
MS.gene83579.t1 MTR_7g451650 43.077 130 60 2 162 288 57 175 6.81e-22 91.3
MS.gene83579.t1 MTR_7g050350 41.935 124 58 2 168 288 1 113 3.75e-19 82.4
MS.gene83579.t1 MTR_7g451650 41.935 124 58 2 168 288 1 113 3.75e-19 82.4
MS.gene83579.t1 MTR_4g009420 39.370 127 61 2 162 288 65 175 4.40e-17 78.2
MS.gene83579.t1 MTR_4g009420 39.370 127 61 2 162 288 65 175 7.63e-17 77.8
MS.gene83579.t1 MTR_4g009510 38.462 143 72 4 150 288 53 183 1.32e-16 77.0
MS.gene83579.t1 MTR_8g067280 25.781 256 156 6 45 273 361 609 1.55e-15 77.4
MS.gene83579.t1 MTR_6g047550 46.835 79 42 0 139 217 173 251 2.52e-15 74.7
MS.gene83579.t1 MTR_5g030430 25.431 232 148 4 66 273 410 640 3.37e-15 76.3
MS.gene83579.t1 MTR_8g024790 29.310 174 108 6 106 273 264 428 7.27e-15 75.1
MS.gene83579.t1 MTR_5g014550 39.516 124 69 3 169 288 54 175 1.42e-14 71.2
MS.gene83579.t1 MTR_8g027495 31.496 127 78 4 138 264 457 574 6.39e-13 69.3
MS.gene83579.t1 MTR_7g117670 34.211 114 61 2 138 247 401 504 1.99e-12 67.8
MS.gene83579.t1 MTR_1g072320 25.949 158 107 2 123 270 454 611 8.43e-12 65.9
MS.gene83579.t1 MTR_8g024770 25.556 180 113 7 118 288 262 429 3.03e-11 63.9
MS.gene83579.t1 MTR_7g096350 26.531 147 85 3 128 273 343 467 9.44e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene83579.t1 AT4G37850 39.604 202 106 5 96 291 116 307 8.41e-34 126
MS.gene83579.t1 AT4G37850 39.604 202 106 5 96 291 116 307 8.41e-34 126
MS.gene83579.t1 AT2G22750 37.611 226 120 6 77 289 65 282 1.06e-29 114
MS.gene83579.t1 AT2G22750 37.611 226 120 6 77 289 93 310 1.43e-29 115
MS.gene83579.t1 AT2G22750 37.611 226 120 6 77 289 89 306 1.48e-29 115
MS.gene83579.t1 AT2G22750 37.333 225 120 6 77 288 65 281 4.86e-29 113
MS.gene83579.t1 AT2G22750 37.333 225 120 6 77 288 93 309 6.38e-29 113
MS.gene83579.t1 AT2G22760 41.176 170 95 2 131 295 111 280 2.35e-28 110
MS.gene83579.t1 AT2G22760 42.331 163 89 2 131 288 111 273 2.85e-28 110
MS.gene83579.t1 AT2G22770 37.725 167 87 2 139 288 132 298 4.74e-23 97.1
MS.gene83579.t1 AT5G46760 28.800 250 148 9 40 273 320 555 6.99e-17 81.3
MS.gene83579.t1 AT4G17880 27.650 217 141 5 62 273 347 552 1.80e-16 80.1
MS.gene83579.t1 AT4G09820 33.803 142 76 2 129 270 353 476 4.19e-16 79.0
MS.gene83579.t1 AT2G46510 36.800 125 62 4 122 245 377 485 1.95e-14 73.9
MS.gene83579.t1 AT1G32640 28.652 178 108 7 128 290 440 613 5.73e-13 69.7

Find 57 sgRNAs with CRISPR-Local

Find 148 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTTCTTCCCTTCCTCCAAC+TGG 0.191139 2.2:-1191954 None:intergenic
CAGCAACCTGTTACATATTC+TGG 0.210205 2.2:+1189565 MS.gene83579:CDS
GCTAGCAGTGTATTGGCTTT+TGG 0.252967 2.2:+1190469 MS.gene83579:CDS
GATTCTTTGCTATTCTTGTT+TGG 0.275304 2.2:-1190241 None:intergenic
TTACTTCTACTCTTTGTTCT+TGG 0.277856 2.2:-1189754 None:intergenic
ACTTCTTGTTCTGATTCTTC+TGG 0.307827 2.2:-1189730 None:intergenic
TGATGTTAAAGCAAGAATAT+TGG 0.324656 2.2:+1190351 MS.gene83579:CDS
GCACTTTCAGCTACTATTCC+TGG 0.324686 2.2:+1189910 MS.gene83579:CDS
TCAGTGTTTGGATCACATTA+TGG 0.344284 2.2:+1189846 MS.gene83579:CDS
AGTAGTAGTAGCTGGTATTA+TGG 0.354699 2.2:-1189704 None:intergenic
TAGAAGTGGTTCTCAGTGTT+TGG 0.364117 2.2:+1189834 MS.gene83579:CDS
TGTCACTGCTAGCAGTGTAT+TGG 0.365840 2.2:+1190462 MS.gene83579:CDS
TGAGCCATCCATCTCATTAG+AGG 0.377502 2.2:-1189602 None:intergenic
AAGTAATAATAAGAGGAGTT+TGG 0.391916 2.2:+1189771 MS.gene83579:CDS
CTGCTTCCAGAATATGTAAC+AGG 0.414669 2.2:-1189571 None:intergenic
AGAGTAGAAGTAATAATAAG+AGG 0.424376 2.2:+1189764 MS.gene83579:CDS
TGGCTTTACTATTGTCGCTC+AGG 0.443880 2.2:+1190504 MS.gene83579:CDS
GGAACATTGGCCTCTTCATT+CGG 0.453854 2.2:+1189309 MS.gene83579:CDS
CTTCTTCCCTTCCTCCAACT+GGG 0.463799 2.2:-1191953 None:intergenic
AGAACATCATGGAGGAATCA+TGG 0.464890 2.2:+1189287 None:intergenic
TTCTACTCTTCTTTCCACTT+TGG 0.465419 2.2:-1189816 None:intergenic
TTTATTACCTTCTTCAAGCC+AGG 0.465921 2.2:-1189928 None:intergenic
AAAGATAGAATAAATGTCCT+TGG 0.468384 2.2:-1189670 None:intergenic
AGCAAGAATATTGGAAAATG+AGG 0.474113 2.2:+1190360 MS.gene83579:CDS
TAATGGTGACAATAGGAATT+GGG 0.480317 2.2:+1189463 MS.gene83579:intron
TACCACCTCAAATTCTGATC+AGG 0.481127 2.2:+1190306 MS.gene83579:CDS
ATGGATGGCTCAGATTGCTC+AGG 0.485183 2.2:+1189613 MS.gene83579:CDS
CCAGTTGGAGGAAGGGAAGA+AGG 0.509133 2.2:+1191954 MS.gene83579:CDS
TGGAGGAATCATGGGAACAT+TGG 0.515296 2.2:+1189296 MS.gene83579:CDS
TACTATTCCTGGCTTGAAGA+AGG 0.517604 2.2:+1189921 MS.gene83579:CDS
TCTGGTGTAGTAGTAGTAGC+TGG 0.520741 2.2:-1189712 None:intergenic
TCATAACCCAGTTGGAGGAA+GGG 0.521814 2.2:+1191947 MS.gene83579:CDS
ATAGGAATTGGGTGATGTTG+AGG 0.530496 2.2:+1189474 MS.gene83579:intron
GCAATCCTGATCAGAATTTG+AGG 0.532272 2.2:-1190311 None:intergenic
GTCATAACCCAGTTGGAGGA+AGG 0.543020 2.2:+1191946 MS.gene83579:CDS
AAGAGTCATAACCCAGTTGG+AGG 0.557437 2.2:+1191942 MS.gene83579:CDS
TCTTTCATCCTCTAATGAGA+TGG 0.562481 2.2:+1189594 MS.gene83579:CDS
AGTGGAAAGAAGAGTAGAAG+TGG 0.563816 2.2:+1189820 MS.gene83579:CDS
GGTGATGTTGAGGATTTGCT+AGG 0.567202 2.2:+1189484 MS.gene83579:CDS
TAGAATAAATGTCCTTGGAG+TGG 0.581040 2.2:-1189665 None:intergenic
ATGGACAAGAACTATATACT+TGG 0.584966 2.2:+1190163 MS.gene83579:CDS
GCAAAAGCAAGTAACCAAAG+TGG 0.587147 2.2:+1189802 MS.gene83579:CDS
TGGACGGTGTTGATGAAGGA+TGG 0.592345 2.2:-1189645 None:intergenic
GGAGTGGACGGTGTTGATGA+AGG 0.594219 2.2:-1189649 None:intergenic
GAACATCATGGAGGAATCAT+GGG 0.596545 2.2:+1189288 None:intergenic
ATAAATGTCCTTGGAGTGGA+CGG 0.600736 2.2:-1189661 None:intergenic
CATTCAGATCCACTGTGAGA+AGG 0.601974 2.2:+1190387 MS.gene83579:CDS
TCATCCTCTAATGAGATGGA+TGG 0.603818 2.2:+1189598 MS.gene83579:CDS
CTTGCTTTAACATCAAAGAG+TGG 0.605135 2.2:-1190343 None:intergenic
AATATGTAACAGGTTGCTGA+AGG 0.616197 2.2:-1189561 None:intergenic
CATCAACACCGTCCACTCCA+AGG 0.620000 2.2:+1189653 MS.gene83579:CDS
AGAACGTGTGAAGGAGCTAG+AGG 0.643700 2.2:+1190216 MS.gene83579:CDS
GTGATGTTGAGGATTTGCTA+GGG 0.643753 2.2:+1189485 MS.gene83579:CDS
ACTACTTCAAGAACGTGTGA+AGG 0.653803 2.2:+1190207 MS.gene83579:CDS
TGGATGGCTCAGATTGCTCA+GGG 0.676528 2.2:+1189614 MS.gene83579:CDS
TGTCAATTTCCTTCTCACAG+TGG 0.679003 2.2:-1190396 None:intergenic
ATCCTGATCAGAATTTGAGG+TGG 0.691103 2.2:-1190308 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGAAAAAAACAAAAAAAAA+AGG - chr2.2:1191612-1191631 None:intergenic 10.0%
!! AGAAAAAAACAAAAAAAAAA+GGG - chr2.2:1191611-1191630 None:intergenic 10.0%
!! TAAATAATCATTTCAATTAA+TGG + chr2.2:1189446-1189465 MS.gene83579:intron 10.0%
!!! TATAATATCATAATGTTTTA+TGG - chr2.2:1190556-1190575 None:intergenic 10.0%
!! AATGTTTAGCTATTTAAATA+TGG - chr2.2:1190877-1190896 None:intergenic 15.0%
!! ATGTTTAGCTATTTAAATAT+GGG - chr2.2:1190876-1190895 None:intergenic 15.0%
!! CAATCTAATATTTAATAACA+TGG + chr2.2:1191276-1191295 MS.gene83579:intron 15.0%
!! TGCATAAATTAATTAATAGA+TGG + chr2.2:1190144-1190163 MS.gene83579:intron 15.0%
!!! AATTATTATTTGAAGAGTTT+TGG - chr2.2:1191903-1191922 None:intergenic 15.0%
!!! AATTATTTTAATCAAGTTGT+AGG + chr2.2:1191023-1191042 MS.gene83579:intron 15.0%
!! AAACAATATTAGAAAAACCT+CGG + chr2.2:1191527-1191546 MS.gene83579:intron 20.0%
!! AGACGTTTGATAAATTTATA+AGG - chr2.2:1190651-1190670 None:intergenic 20.0%
!! CTCATGAGATAATATTTAAA+GGG + chr2.2:1190669-1190688 MS.gene83579:intron 20.0%
!! TATTAATGAATAGTTTGACT+TGG - chr2.2:1190972-1190991 None:intergenic 20.0%
!! TCTCATGAGATAATATTTAA+AGG + chr2.2:1190668-1190687 MS.gene83579:intron 20.0%
!! TGAAGAAAATTACTCTAATT+GGG - chr2.2:1191757-1191776 None:intergenic 20.0%
!! TTGAAGAAAATTACTCTAAT+TGG - chr2.2:1191758-1191777 None:intergenic 20.0%
!!! ATGGTAATAATTCACTTTTA+TGG + chr2.2:1190811-1190830 MS.gene83579:intron 20.0%
!!! ATTAAGAGCACTAATTAAAT+TGG - chr2.2:1189968-1189987 None:intergenic 20.0%
!!! ATTTTATAACGGATTGAATT+GGG + chr2.2:1190106-1190125 MS.gene83579:intron 20.0%
!!! TATTTTATAACGGATTGAAT+TGG + chr2.2:1190105-1190124 MS.gene83579:intron 20.0%
!!! TCAAAAACAGTTTTCTTTTA+TGG + chr2.2:1190792-1190811 MS.gene83579:intron 20.0%
!!! TTAAGAGCACTAATTAAATT+GGG - chr2.2:1189967-1189986 None:intergenic 20.0%
!!! TTTCTAATATTGTTTTTCCT+CGG - chr2.2:1191522-1191541 None:intergenic 20.0%
! AAAAAAAAAAGGGATTGAAG+TGG - chr2.2:1191601-1191620 None:intergenic 25.0%
! AAAGATAGAATAAATGTCCT+TGG - chr2.2:1189673-1189692 None:intergenic 25.0%
! AACATAAAAAACTCAACCTA+TGG + chr2.2:1191863-1191882 MS.gene83579:intron 25.0%
! AAGTAATAATAAGAGGAGTT+TGG + chr2.2:1189771-1189790 MS.gene83579:CDS 25.0%
! ACTGGTTAAAGATATGAAAA+AGG + chr2.2:1190717-1190736 MS.gene83579:intron 25.0%
! AGAGTAGAAGTAATAATAAG+AGG + chr2.2:1189764-1189783 MS.gene83579:CDS 25.0%
! ATGAAGAAGAAGAAAAAAGA+AGG - chr2.2:1191578-1191597 None:intergenic 25.0%
! GAGTATATTTCTTCAATCAA+AGG + chr2.2:1191690-1191709 MS.gene83579:intron 25.0%
! TGAAGAAGAAGAAAAAAGAA+GGG - chr2.2:1191577-1191596 None:intergenic 25.0%
! TGATGTTAAAGCAAGAATAT+TGG + chr2.2:1190351-1190370 MS.gene83579:CDS 25.0%
! TTCATGGAAAATTCAATTGA+AGG + chr2.2:1191823-1191842 MS.gene83579:intron 25.0%
! TTTATGTCAGAAAATAGTAC+TGG - chr2.2:1189430-1189449 None:intergenic 25.0%
! TTTCAATTAATGGTGACAAT+AGG + chr2.2:1189456-1189475 MS.gene83579:intron 25.0%
! TTTCCATGAAGAAAATTTAC+TGG - chr2.2:1191813-1191832 None:intergenic 25.0%
!!! TATTATTTGAAGAGTTTTGG+AGG - chr2.2:1191900-1191919 None:intergenic 25.0%
!!! TGTTCTATGTCATTTTTTTG+AGG + chr2.2:1189378-1189397 MS.gene83579:intron 25.0%
!!! TTGGCTACTATTTTATTTAC+TGG - chr2.2:1190953-1190972 None:intergenic 25.0%
AGAAGAACATATTAATCCCT+CGG - chr2.2:1190054-1190073 None:intergenic 30.0%
AGCAAGAATATTGGAAAATG+AGG + chr2.2:1190360-1190379 MS.gene83579:CDS 30.0%
ATGGACAAGAACTATATACT+TGG + chr2.2:1190163-1190182 MS.gene83579:CDS 30.0%
ATTTAAAGGGAAATGCTAAC+CGG + chr2.2:1190682-1190701 MS.gene83579:intron 30.0%
TAATGGTGACAATAGGAATT+GGG + chr2.2:1189463-1189482 MS.gene83579:intron 30.0%
TACTCAAATTTACTGCTAGT+TGG - chr2.2:1191675-1191694 None:intergenic 30.0%
TAGTTGGATTCTGGATAATT+GGG - chr2.2:1191659-1191678 None:intergenic 30.0%
TTAATGGTGACAATAGGAAT+TGG + chr2.2:1189462-1189481 MS.gene83579:intron 30.0%
TTACTTCTACTCTTTGTTCT+TGG - chr2.2:1189757-1189776 None:intergenic 30.0%
! ACACCAGTAAATTTTCTTCA+TGG + chr2.2:1191807-1191826 MS.gene83579:intron 30.0%
! CAGTCGGATTTTAAATTCTT+CGG - chr2.2:1191463-1191482 None:intergenic 30.0%
!! AGTATTTTTACCGAATGAAG+AGG - chr2.2:1189322-1189341 None:intergenic 30.0%
!! GATTCTTTGCTATTCTTGTT+TGG - chr2.2:1190244-1190263 None:intergenic 30.0%
!! TTTTATTTACTGGACCTTGA+TGG - chr2.2:1190943-1190962 None:intergenic 30.0%
AAAAAGAGTCATAACCCAGT+TGG + chr2.2:1191939-1191958 MS.gene83579:CDS 35.0%
AATATGTAACAGGTTGCTGA+AGG - chr2.2:1189564-1189583 None:intergenic 35.0%
ACTTCTTGTTCTGATTCTTC+TGG - chr2.2:1189733-1189752 None:intergenic 35.0%
AGTAGTAGTAGCTGGTATTA+TGG - chr2.2:1189707-1189726 None:intergenic 35.0%
ATATCTTTAACCAGTGTCTC+GGG - chr2.2:1190712-1190731 None:intergenic 35.0%
ATTTACTGCTAGTTGGATTC+TGG - chr2.2:1191668-1191687 None:intergenic 35.0%
CATATCTTTAACCAGTGTCT+CGG - chr2.2:1190713-1190732 None:intergenic 35.0%
CTAAATGTTCCATTCCATCA+AGG + chr2.2:1190926-1190945 MS.gene83579:intron 35.0%
CTAGTTGGATTCTGGATAAT+TGG - chr2.2:1191660-1191679 None:intergenic 35.0%
CTTGCTTTAACATCAAAGAG+TGG - chr2.2:1190346-1190365 None:intergenic 35.0%
TAGAATAAATGTCCTTGGAG+TGG - chr2.2:1189668-1189687 None:intergenic 35.0%
TCAGTGTTTGGATCACATTA+TGG + chr2.2:1189846-1189865 MS.gene83579:CDS 35.0%
TCTTTCATCCTCTAATGAGA+TGG + chr2.2:1189594-1189613 MS.gene83579:CDS 35.0%
TGCTGTTGACACATTACATA+AGG + chr2.2:1191389-1191408 MS.gene83579:intron 35.0%
TTAATCCCTCGGTTAAATAC+CGG - chr2.2:1190043-1190062 None:intergenic 35.0%
TTCTACTCTTCTTTCCACTT+TGG - chr2.2:1189819-1189838 None:intergenic 35.0%
TTTATTACCTTCTTCAAGCC+AGG - chr2.2:1189931-1189950 None:intergenic 35.0%
! AAAATACGATTTTGTCCCCT+CGG + chr2.2:1191427-1191446 MS.gene83579:intron 35.0%
! AAAGAAGGGTCTGTTTTACT+CGG - chr2.2:1191563-1191582 None:intergenic 35.0%
!! GTAGAAAGATTGATTTGTCC+CGG + chr2.2:1190021-1190040 MS.gene83579:intron 35.0%
!! TGGTTACTTGCTTTTGCTTT+TGG - chr2.2:1189799-1189818 None:intergenic 35.0%
ACTACTTCAAGAACGTGTGA+AGG + chr2.2:1190207-1190226 MS.gene83579:CDS 40.0%
AGTGGAAAGAAGAGTAGAAG+TGG + chr2.2:1189820-1189839 MS.gene83579:CDS 40.0%
ATAAATGTCCTTGGAGTGGA+CGG - chr2.2:1189664-1189683 None:intergenic 40.0%
ATAACATGGTGTCTTGCAGA+TGG + chr2.2:1191290-1191309 MS.gene83579:intron 40.0%
ATAGGAATTGGGTGATGTTG+AGG + chr2.2:1189474-1189493 MS.gene83579:intron 40.0%
ATCCTGATCAGAATTTGAGG+TGG - chr2.2:1190311-1190330 None:intergenic 40.0%
CAGCAACCTGTTACATATTC+TGG + chr2.2:1189565-1189584 MS.gene83579:CDS 40.0%
CGAAATGACGGTGATTGATT+TGG + chr2.2:1191323-1191342 MS.gene83579:intron 40.0%
CTGCTTCCAGAATATGTAAC+AGG - chr2.2:1189574-1189593 None:intergenic 40.0%
GCAAAAGCAAGTAACCAAAG+TGG + chr2.2:1189802-1189821 MS.gene83579:CDS 40.0%
GCAATCCTGATCAGAATTTG+AGG - chr2.2:1190314-1190333 None:intergenic 40.0%
GGAGGTTATGATGATTCCAT+AGG - chr2.2:1191882-1191901 None:intergenic 40.0%
TAACATGGTGTCTTGCAGAT+GGG + chr2.2:1191291-1191310 MS.gene83579:intron 40.0%
TAATCCCTCGGTTAAATACC+GGG - chr2.2:1190042-1190061 None:intergenic 40.0%
TACCACCTCAAATTCTGATC+AGG + chr2.2:1190306-1190325 MS.gene83579:CDS 40.0%
TAGAAGTGGTTCTCAGTGTT+TGG + chr2.2:1189834-1189853 MS.gene83579:CDS 40.0%
TATCTTTAACCAGTGTCTCG+GGG - chr2.2:1190711-1190730 None:intergenic 40.0%
TCATCCTCTAATGAGATGGA+TGG + chr2.2:1189598-1189617 MS.gene83579:CDS 40.0%
TGTCAATTTCCTTCTCACAG+TGG - chr2.2:1190399-1190418 None:intergenic 40.0%
TTTACTGGACCTTGATGGAA+TGG - chr2.2:1190938-1190957 None:intergenic 40.0%
! TACTATTCCTGGCTTGAAGA+AGG + chr2.2:1189921-1189940 MS.gene83579:CDS 40.0%
! TTAACTACCGAGGTTTTCCT+CGG - chr2.2:1191496-1191515 None:intergenic 40.0%
!! GTGATGTTGAGGATTTGCTA+GGG + chr2.2:1189485-1189504 MS.gene83579:CDS 40.0%
!!! GCTTTTGGAACTTCAACTCT+TGG + chr2.2:1190484-1190503 MS.gene83579:CDS 40.0%
AAGAGTCATAACCCAGTTGG+AGG + chr2.2:1191942-1191961 MS.gene83579:CDS 45.0%
CATTCAGATCCACTGTGAGA+AGG + chr2.2:1190387-1190406 MS.gene83579:CDS 45.0%
GCACTTTCAGCTACTATTCC+TGG + chr2.2:1189910-1189929 MS.gene83579:CDS 45.0%
TAAATATGGGTCCCGCTAAC+CGG - chr2.2:1190863-1190882 None:intergenic 45.0%
TACTCGGTAGTTAACTACCG+AGG - chr2.2:1191547-1191566 None:intergenic 45.0%
TCATAACCCAGTTGGAGGAA+GGG + chr2.2:1191947-1191966 MS.gene83579:CDS 45.0%
TCTGGTGTAGTAGTAGTAGC+TGG - chr2.2:1189715-1189734 None:intergenic 45.0%
TGAGCCATCCATCTCATTAG+AGG - chr2.2:1189605-1189624 None:intergenic 45.0%
TGGAGGAATCATGGGAACAT+TGG + chr2.2:1189296-1189315 MS.gene83579:CDS 45.0%
TGTCACTGCTAGCAGTGTAT+TGG + chr2.2:1190462-1190481 MS.gene83579:CDS 45.0%
TTAACTGCCGAGGAAAACCT+CGG + chr2.2:1191486-1191505 MS.gene83579:intron 45.0%
TTGTCCCGGTATTTAACCGA+GGG + chr2.2:1190035-1190054 MS.gene83579:intron 45.0%
TTTGTCCCGGTATTTAACCG+AGG + chr2.2:1190034-1190053 MS.gene83579:intron 45.0%
! GGAACATTGGCCTCTTCATT+CGG + chr2.2:1189309-1189328 MS.gene83579:CDS 45.0%
! GGTGATGTTGAGGATTTGCT+AGG + chr2.2:1189484-1189503 MS.gene83579:CDS 45.0%
! TGGCTTTACTATTGTCGCTC+AGG + chr2.2:1190504-1190523 MS.gene83579:CDS 45.0%
!!! GCTAGCAGTGTATTGGCTTT+TGG + chr2.2:1190469-1190488 MS.gene83579:CDS 45.0%
!!! TTAATGATTTTATTTTATAA+CGG + chr2.2:1190095-1190114 MS.gene83579:intron 5.0%
AGAACGTGTGAAGGAGCTAG+AGG + chr2.2:1190216-1190235 MS.gene83579:CDS 50.0%
ATGGATGGCTCAGATTGCTC+AGG + chr2.2:1189613-1189632 MS.gene83579:CDS 50.0%
CTTCTTCCCTTCCTCCAACT+GGG - chr2.2:1191956-1191975 None:intergenic 50.0%
GTCATAACCCAGTTGGAGGA+AGG + chr2.2:1191946-1191965 MS.gene83579:CDS 50.0%
GTGTCTTGCAGATGGGTGAA+GGG + chr2.2:1191298-1191317 MS.gene83579:intron 50.0%
TATGATTAACCAGTGCCCCG+AGG + chr2.2:1190834-1190853 MS.gene83579:intron 50.0%
TGGATGGCTCAGATTGCTCA+GGG + chr2.2:1189614-1189633 MS.gene83579:CDS 50.0%
! GGGTGAAGGGTACGAAATGA+CGG + chr2.2:1191311-1191330 MS.gene83579:intron 50.0%
!! TGGACGGTGTTGATGAAGGA+TGG - chr2.2:1189648-1189667 None:intergenic 50.0%
ACCTCGGTAGTTAACTGCCG+AGG + chr2.2:1191502-1191521 MS.gene83579:intron 55.0%
CATCAACACCGTCCACTCCA+AGG + chr2.2:1189653-1189672 MS.gene83579:CDS 55.0%
CCAGTTGGAGGAAGGGAAGA+AGG + chr2.2:1191954-1191973 MS.gene83579:CDS 55.0%
CCTCGGCAGTTAACTGCAGT+CGG - chr2.2:1191479-1191498 None:intergenic 55.0%
CCTTCTTCCCTTCCTCCAAC+TGG - chr2.2:1191957-1191976 None:intergenic 55.0%
CTTCGGCAGTTAACTGCCGA+GGG - chr2.2:1191446-1191465 None:intergenic 55.0%
GGTGTCTTGCAGATGGGTGA+AGG + chr2.2:1191297-1191316 MS.gene83579:intron 55.0%
TCCTCGGCAGTTAACTACCG+AGG - chr2.2:1191506-1191525 None:intergenic 55.0%
TCTTCGGCAGTTAACTGCCG+AGG - chr2.2:1191447-1191466 None:intergenic 55.0%
TTCGGCAGTTAACTGCCGAG+GGG - chr2.2:1191445-1191464 None:intergenic 55.0%
!! GGAGTGGACGGTGTTGATGA+AGG - chr2.2:1189652-1189671 None:intergenic 55.0%
AACCAGTGTCTCGGGGACAC+CGG - chr2.2:1190704-1190723 None:intergenic 60.0%
CCGACTGCAGTTAACTGCCG+AGG + chr2.2:1191476-1191495 MS.gene83579:intron 60.0%
AACCAGTGCCCCGAGGACAC+CGG + chr2.2:1190841-1190860 MS.gene83579:intron 65.0%
AACCGGTGTCCCCGAGACAC+TGG + chr2.2:1190699-1190718 MS.gene83579:intron 65.0%
GTCCCGCTAACCGGTGTCCT+CGG - chr2.2:1190854-1190873 None:intergenic 65.0%
TCCCGCTAACCGGTGTCCTC+GGG - chr2.2:1190853-1190872 None:intergenic 65.0%
AACCGGTGTCCTCGGGGCAC+TGG - chr2.2:1190846-1190865 None:intergenic 70.0%
CCCGCTAACCGGTGTCCTCG+GGG - chr2.2:1190852-1190871 None:intergenic 70.0%
! CCCCGAGGACACCGGTTAGC+GGG + chr2.2:1190849-1190868 MS.gene83579:intron 70.0%
! GCCCCGAGGACACCGGTTAG+CGG + chr2.2:1190848-1190867 MS.gene83579:intron 70.0%


Chromosome Type Strat End Strand Name
chr2.2 gene 1189295 1191980 1189295 ID=MS.gene83579
chr2.2 mRNA 1189295 1191980 1189295 ID=MS.gene83579.t1;Parent=MS.gene83579
chr2.2 exon 1189295 1189330 1189295 ID=MS.gene83579.t1.exon1;Parent=MS.gene83579.t1
chr2.2 CDS 1189295 1189330 1189295 ID=cds.MS.gene83579.t1;Parent=MS.gene83579.t1
chr2.2 exon 1189478 1189942 1189478 ID=MS.gene83579.t1.exon2;Parent=MS.gene83579.t1
chr2.2 CDS 1189478 1189942 1189478 ID=cds.MS.gene83579.t1;Parent=MS.gene83579.t1
chr2.2 exon 1190163 1190525 1190163 ID=MS.gene83579.t1.exon3;Parent=MS.gene83579.t1
chr2.2 CDS 1190163 1190525 1190163 ID=cds.MS.gene83579.t1;Parent=MS.gene83579.t1
chr2.2 exon 1191939 1191980 1191939 ID=MS.gene83579.t1.exon4;Parent=MS.gene83579.t1
chr2.2 CDS 1191939 1191980 1191939 ID=cds.MS.gene83579.t1;Parent=MS.gene83579.t1
Gene Sequence

>MS.gene83579

ATGGAGGAATCATGGGAACATTGGCCTCTTCATTCGGTAAAAATACTAGCTATACACATCATAAATCATACTAACAAGTAATATGTTCTATGTCATTTTTTTGAGGAAGTTATTTATGTATATTGATAAATACCAGTACTATTTTCTGACATAAATAATCATTTCAATTAATGGTGACAATAGGAATTGGGTGATGTTGAGGATTTGCTAGGGCAATACTGTAAAACTAGTGCTGATGATGAAGAAGAGTTCTTGAGAGACATAATCCTTCAGCAACCTGTTACATATTCTGGAAGCAGTCTTTCATCCTCTAATGAGATGGATGGCTCAGATTGCTCAGGGAAAAAGCTCCATCCTTCATCAACACCGTCCACTCCAAGGACATTTATTCTATCTTTTGATAAATCAACCATAATACCAGCTACTACTACTACACCAGAAGAATCAGAACAAGAAGTACCAAGAACAAAGAGTAGAAGTAATAATAAGAGGAGTTTGGAACCAAAAGCAAAAGCAAGTAACCAAAGTGGAAAGAAGAGTAGAAGTGGTTCTCAGTGTTTGGATCACATTATGGCTGAGAGAAAAAGAAGACTAGAACTATCACAGAAGTTCATTGCACTTTCAGCTACTATTCCTGGCTTGAAGAAGGTAATAAAATTACAACTAAAACCCAATTTAATTAGTGCTCTTAATTTTTTTACACTAAACATTTTAGTCACTGTATTAGTAGAAAGATTGATTTGTCCCGGTATTTAACCGAGGGATTAATATGTTCTTCTGTAAACATATCAGAGACTAAATTAATGATTTTATTTTATAACGGATTGAATTGGGTCGCAAGAATGATTTTGCATAAATTAATTAATAGATGGACAAGAACTATATACTTGGTGAAGCAATCAGTTATGTGAAACTACTTCAAGAACGTGTGAAGGAGCTAGAGGATCCAAACAAGAATAGCAAAGAATCAACAATAATTCTCAAGAAAACTGATATGTGTGTAAGTGAAGATACCACCTCAAATTCTGATCAGGATTGCTGCAAATCACCACTCTTTGATGTTAAAGCAAGAATATTGGAAAATGAGGTACTCATTCAGATCCACTGTGAGAAGGAAATTGACATTGAGATCAAAATATATAACGTGCTTCAAAATCTTGATCTCTTTGTCACTGCTAGCAGTGTATTGGCTTTTGGAACTTCAACTCTTGGCTTTACTATTGTCGCTCAGGTATGCATAATTTGCAAGAGTTTGATTCCATAAAACATTATGATATTATAATTGTTCAATAAATCATTCATTTGTCATCGCATAATTCAATTAGTAAAAACATTGCATAATATGTTATTTCACCTTATAAATTTATCAAACGTCTCATGAGATAATATTTAAAGGGAAATGCTAACCGGTGTCCCCGAGACACTGGTTAAAGATATGAAAAAGGAAATTATATAGTAGTTAATGCACTGAAATTGTGTAATTAATTTACAATAAAGTCAAAAACAGTTTTCTTTTATGGTAATAATTCACTTTTATGGTATGATTAACCAGTGCCCCGAGGACACCGGTTAGCGGGACCCATATTTAAATAGCTAAACATTTGAAAATAATGATCTCTCATTTGAATTATCTAAATGTTCCATTCCATCAAGGTCCAGTAAATAAAATAGTAGCCAAGTCAAACTATTCATTAATAATTATTGCTATCAACTTGATTTTGTCACATTAATTATTTTAATCAAGTTGTAGGTATTTTATCGTTCAATGCTATTAACTTAAATGTTGTGAGTTTATTCATAGATTCATCATTTTTTCGTTTTTATGATGTTAAATTTTTATTTAGTTCTAATGTACTATAAATTTGAATGAATGAGTATCGTTTCTTTTGTAAAAAATATCATATTTTATATTAATATTTTATATTAACAATAGTTCATAAATAATTTAATATATCAATATATAATTGATTAATTAAATAATCAATCTAATATTTAATAACATGGTGTCTTGCAGATGGGTGAAGGGTACGAAATGACGGTGATTGATTTGGTGAAAACTCTATTGCATGTGCTGACTAGCAGAACTGAGAAAATTGCTGTTGACACATTACATAAGGCTGTGACACACATGTAAAATACGATTTTGTCCCCTCGGCAGTTAACTGCCGAAGAATTTAAAATCCGACTGCAGTTAACTGCCGAGGAAAACCTCGGTAGTTAACTGCCGAGGAAAAACAATATTAGAAAAACCTCGGTAGTTAACTACCGAGTAAAACAGACCCTTCTTTTTTCTTCTTCTTCATCCACTTCAATCCCTTTTTTTTTTGTTTTTTTCTTCAATACTTCTAACGTAGAACATTTCCCAATTATCCAGAATCCAACTAGCAGTAAATTTGAGTATATTTCTTCAATCAAAGGCATAGAAATCATCAACAATTAATTTTAGCAATGAATTTTATCCCAATTAGAGTAATTTTCTTCAATTTTCCCAATTAGAGTAATTTTCTTCAATACACCAGTAAATTTTCTTCATGGAAAATTCAATTGAAGGCATAGAAATCATCGCTAAACATAAAAAACTCAACCTATGGAATCATCATAACCTCCAAAACTCTTCAAATAATAATTTATTTATTTTTTTCAGAAAAAGAGTCATAACCCAGTTGGAGGAAGGGAAGAAGGATGA
Protein sequence

>MS.gene83579.t1

MEESWEHWPLHSELGDVEDLLGQYCKTSADDEEEFLRDIILQQPVTYSGSSLSSSNEMDGSDCSGKKLHPSSTPSTPRTFILSFDKSTIIPATTTTPEESEQEVPRTKSRSNNKRSLEPKAKASNQSGKKSRSGSQCLDHIMAERKRRLELSQKFIALSATIPGLKKMDKNYILGEAISYVKLLQERVKELEDPNKNSKESTIILKKTDMCVSEDTTSNSDQDCCKSPLFDVKARILENEVLIQIHCEKEIDIEIKIYNVLQNLDLFVTASSVLAFGTSTLGFTIVAQKKSHNPVGGREEG