Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83812.t1 | XP_003607886.1 | 98 | 50 | 0 | 1 | 176 | 224 | 450 | 499 | 1.80E-17 | 99.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83812.t1 | P0C8Q4 | 62.0 | 50 | 18 | 1 | 175 | 223 | 517 | 566 | 7.0e-10 | 65.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83812.t1 | A0A2Z6NR72 | 70.1 | 67 | 20 | 0 | 50 | 116 | 136 | 202 | 3.8e-17 | 98.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049272 | MS.gene83812 | 0.804913 | 1.72E-49 | -1.69E-46 |
| MS.gene049669 | MS.gene83812 | 0.80055 | 1.37E-48 | -1.69E-46 |
| MS.gene050355 | MS.gene83812 | 0.816839 | 4.50E-52 | -1.69E-46 |
| MS.gene050750 | MS.gene83812 | 0.802242 | 6.16E-49 | -1.69E-46 |
| MS.gene051924 | MS.gene83812 | -0.810221 | 1.28E-50 | -1.69E-46 |
| MS.gene051926 | MS.gene83812 | -0.808097 | 3.66E-50 | -1.69E-46 |
| MS.gene052333 | MS.gene83812 | 0.801447 | 8.97E-49 | -1.69E-46 |
| MS.gene053953 | MS.gene83812 | 0.804574 | 2.02E-49 | -1.69E-46 |
| MS.gene055701 | MS.gene83812 | 0.807186 | 5.71E-50 | -1.69E-46 |
| MS.gene055818 | MS.gene83812 | 0.83005 | 3.65E-55 | -1.69E-46 |
| MS.gene056506 | MS.gene83812 | 0.813742 | 2.19E-51 | -1.69E-46 |
| MS.gene057026 | MS.gene83812 | 0.814784 | 1.29E-51 | -1.69E-46 |
| MS.gene058502 | MS.gene83812 | 0.805682 | 1.19E-49 | -1.69E-46 |
| MS.gene061040 | MS.gene83812 | -0.808804 | 2.59E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83812.t1 | MTR_4g084060 | 98.000 | 50 | 0 | 1 | 176 | 224 | 450 | 499 | 2.65e-24 | 100 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83812.t1 | AT4G19900 | 62.000 | 50 | 18 | 1 | 175 | 223 | 517 | 566 | 5.51e-12 | 65.1 |
Find 60 sgRNAs with CRISPR-Local
Find 131 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATTCATCTATGAGTTTAAT+TGG | 0.105443 | 3.2:+16140130 | MS.gene83812:CDS |
| TTGCATCCGCCAAACGATTT+TGG | 0.204674 | 3.2:-16139387 | None:intergenic |
| GGGAATCAAAGTACATTAAA+AGG | 0.306086 | 3.2:+16140684 | MS.gene83812:CDS |
| GTTGTAGCAACCTCTAAAAT+TGG | 0.326828 | 3.2:+16140632 | MS.gene83812:CDS |
| CACGGTGGTGCGAGCGGCGG+CGG | 0.327328 | 3.2:-16139528 | None:intergenic |
| CTAATACCTTGAAGTGCGTT+TGG | 0.346402 | 3.2:-16139675 | None:intergenic |
| CTGTTCAACAACAACACTTA+TGG | 0.357243 | 3.2:+16139359 | MS.gene83812:CDS |
| GGTGGTGCGAGCGGCGGCGG+CGG | 0.377968 | 3.2:-16139525 | None:intergenic |
| TATCTAGGTGCAGCCAACTA+TGG | 0.378397 | 3.2:+16140088 | MS.gene83812:intron |
| GCGAGCGGCGGCGGCGGAAC+AGG | 0.385637 | 3.2:-16139519 | None:intergenic |
| GATAATCTGCTATATCTATC+AGG | 0.391074 | 3.2:+16140153 | MS.gene83812:CDS |
| TCCATGCAGTCTGTTCATAA+AGG | 0.396084 | 3.2:+16141334 | MS.gene83812:intron |
| TTCAAACTTAGGTTCAGAAA+AGG | 0.424171 | 3.2:+16140597 | MS.gene83812:intron |
| ATTCATCTATGAGTTTAATT+GGG | 0.425521 | 3.2:+16140131 | MS.gene83812:CDS |
| GATAATCCAAACGCACTTCA+AGG | 0.428487 | 3.2:+16139669 | MS.gene83812:CDS |
| CATAAGTGTTGTTGTTGAAC+AGG | 0.432431 | 3.2:-16139358 | None:intergenic |
| AGGGTTGCACAAAAGTTTGT+AGG | 0.443043 | 3.2:+16141428 | MS.gene83812:CDS |
| ATGGACACGCCAAAATCGTT+TGG | 0.447484 | 3.2:+16139378 | MS.gene83812:CDS |
| TCAAACTTAGGTTCAGAAAA+GGG | 0.463516 | 3.2:+16140598 | MS.gene83812:intron |
| GGCGGTGAGTCGAGTGGTGC+TGG | 0.465026 | 3.2:-16139570 | None:intergenic |
| TTAATACCTCATGATCAAGT+TGG | 0.475786 | 3.2:-16139626 | None:intergenic |
| CCTCAATGAGTCTCCATAGT+TGG | 0.496566 | 3.2:-16140101 | None:intergenic |
| TCTGTTCATAAAGGAATGCT+TGG | 0.498265 | 3.2:+16141343 | MS.gene83812:CDS |
| AGCCTCTGATCGTCGACCAA+GGG | 0.500152 | 3.2:+16139451 | MS.gene83812:CDS |
| GGCGGAACAGGAACTAAATC+CGG | 0.504226 | 3.2:-16139507 | None:intergenic |
| AGGAACTAAATCCGGTGGAA+TGG | 0.512272 | 3.2:-16139499 | None:intergenic |
| GAACAAAACTATTAAACAGT+TGG | 0.519690 | 3.2:+16141454 | MS.gene83812:CDS |
| GGTGGAATGGATAGATGAAT+CGG | 0.522344 | 3.2:-16139486 | None:intergenic |
| TTTGGATTATCAAATTGAGA+TGG | 0.526888 | 3.2:-16139657 | None:intergenic |
| CTCTTTCCAACTTGATCATG+AGG | 0.537783 | 3.2:+16139620 | MS.gene83812:CDS |
| CAGGCGTTCGTTAACACCAT+TGG | 0.538342 | 3.2:-16139339 | None:intergenic |
| ACCCCTTGGTCGACGATCAG+AGG | 0.549561 | 3.2:-16139453 | None:intergenic |
| TGATCAGTGACAGCAACACT+CGG | 0.561314 | 3.2:+16139595 | MS.gene83812:CDS |
| GATTCATCTATCCATTCCAC+CGG | 0.568185 | 3.2:+16139488 | MS.gene83812:CDS |
| ACCACCGTGGTTACACCACT+CGG | 0.570698 | 3.2:+16139542 | MS.gene83812:CDS |
| GAGCCTCTGATCGTCGACCA+AGG | 0.575835 | 3.2:+16139450 | MS.gene83812:CDS |
| AACCACGGTGGTGCGAGCGG+CGG | 0.585564 | 3.2:-16139531 | None:intergenic |
| GACACGCCAAAATCGTTTGG+CGG | 0.589862 | 3.2:+16139381 | MS.gene83812:CDS |
| TAAAATTGGACAAATTAATG+AGG | 0.592021 | 3.2:+16140646 | MS.gene83812:CDS |
| TCGGAGGCATGAAAACCCCT+TGG | 0.593146 | 3.2:-16139467 | None:intergenic |
| TGTAACCACGGTGGTGCGAG+CGG | 0.602050 | 3.2:-16139534 | None:intergenic |
| ATGAGGCAGAGCATGTGACA+TGG | 0.604583 | 3.2:+16140663 | MS.gene83812:CDS |
| CCAACTATGGAGACTCATTG+AGG | 0.618699 | 3.2:+16140101 | MS.gene83812:CDS |
| ATGACGATAACAGTTTGAGA+TGG | 0.623622 | 3.2:+16141384 | MS.gene83812:CDS |
| TGAGGCAGAGCATGTGACAT+GGG | 0.626573 | 3.2:+16140664 | MS.gene83812:CDS |
| GATCAGTGACAGCAACACTC+GGG | 0.627219 | 3.2:+16139596 | MS.gene83812:CDS |
| GATAACAGTTTGAGATGGAA+TGG | 0.632347 | 3.2:+16141389 | MS.gene83812:CDS |
| GCCTCTGATCGTCGACCAAG+GGG | 0.633470 | 3.2:+16139452 | MS.gene83812:CDS |
| CGCCGCCGCTCGCACCACCG+TGG | 0.641187 | 3.2:+16139529 | MS.gene83812:CDS |
| GCAGCAACTTTAAACGCCAA+AGG | 0.646931 | 3.2:-16141498 | None:intergenic |
| GTGTTGCTGTCACTGATCAG+TGG | 0.668821 | 3.2:-16139591 | None:intergenic |
| ATCAGTGGCGGTGAGTCGAG+TGG | 0.672837 | 3.2:-16139576 | None:intergenic |
| GGAATGGATAGATGAATCGG+AGG | 0.695692 | 3.2:-16139483 | None:intergenic |
| TTGCTGTCACTGATCAGTGG+CGG | 0.704203 | 3.2:-16139588 | None:intergenic |
| TAAACCGAGTGGTGTAACCA+CGG | 0.707417 | 3.2:-16139546 | None:intergenic |
| GGAACAGGAACTAAATCCGG+TGG | 0.710440 | 3.2:-16139504 | None:intergenic |
| TGGTGCTGATCTATTGACGA+GGG | 0.734896 | 3.2:+16141409 | MS.gene83812:CDS |
| ATGGTGCTGATCTATTGACG+AGG | 0.747090 | 3.2:+16141408 | MS.gene83812:CDS |
| ACCGAGTGGTGTAACCACGG+TGG | 0.787713 | 3.2:-16139543 | None:intergenic |
| GTGGTGCTGGATAAACCGAG+TGG | 0.804562 | 3.2:-16139557 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATATAATCTTAGAAAAA+CGG | - | chr3.2:16140771-16140790 | None:intergenic | 10.0% |
| !!! | ATTAAAAGGTAATTTTTATT+TGG | + | chr3.2:16140698-16140717 | MS.gene83812:intron | 10.0% |
| !! | AGTAATATCAAATTATATGA+AGG | - | chr3.2:16140852-16140871 | None:intergenic | 15.0% |
| !! | GTAATATCAAATTATATGAA+GGG | - | chr3.2:16140851-16140870 | None:intergenic | 15.0% |
| !! | ATAATTAAGGGAATTACAAT+AGG | - | chr3.2:16139774-16139793 | None:intergenic | 20.0% |
| !! | ATTCATCTATGAGTTTAATT+GGG | + | chr3.2:16140131-16140150 | MS.gene83812:CDS | 20.0% |
| !! | ATTGTAATTCCCTTAATTAT+TGG | + | chr3.2:16139774-16139793 | MS.gene83812:intron | 20.0% |
| !! | CAAAGAAAGATTCTAAATTA+AGG | - | chr3.2:16140734-16140753 | None:intergenic | 20.0% |
| !! | CAAATATTAATCAACAGTTT+CGG | - | chr3.2:16140425-16140444 | None:intergenic | 20.0% |
| !! | TAAAATTGGACAAATTAATG+AGG | + | chr3.2:16140646-16140665 | MS.gene83812:CDS | 20.0% |
| !! | TAATAAGAATTGACTGATAT+GGG | - | chr3.2:16140194-16140213 | None:intergenic | 20.0% |
| !!! | ATTAATTTGTCCAATTTTAG+AGG | - | chr3.2:16140645-16140664 | None:intergenic | 20.0% |
| !!! | TTTTACATGCTAATTGTTAA+TGG | + | chr3.2:16141160-16141179 | MS.gene83812:intron | 20.0% |
| ! | AAAGGGATTAACAAATAAGA+AGG | - | chr3.2:16139991-16140010 | None:intergenic | 25.0% |
| ! | AAGTTATATTCCTGTATTGA+AGG | - | chr3.2:16139896-16139915 | None:intergenic | 25.0% |
| ! | AATTCACCACCAATAATTAA+GGG | - | chr3.2:16139786-16139805 | None:intergenic | 25.0% |
| ! | ATATTGAATGATAAGAGTGA+TGG | + | chr3.2:16141252-16141271 | MS.gene83812:intron | 25.0% |
| ! | ATCACTCTTATCATTCAATA+TGG | - | chr3.2:16141253-16141272 | None:intergenic | 25.0% |
| ! | CTAATAAGAATTGACTGATA+TGG | - | chr3.2:16140195-16140214 | None:intergenic | 25.0% |
| ! | CTTATTATTGCTCTACTTTA+CGG | + | chr3.2:16140318-16140337 | MS.gene83812:intron | 25.0% |
| ! | GAACAAAACTATTAAACAGT+TGG | + | chr3.2:16141454-16141473 | MS.gene83812:CDS | 25.0% |
| ! | GATTCATCTATGAGTTTAAT+TGG | + | chr3.2:16140130-16140149 | MS.gene83812:CDS | 25.0% |
| ! | TAACAAATAAGAAGGAAAAG+AGG | - | chr3.2:16139983-16140002 | None:intergenic | 25.0% |
| ! | TAATATGACTCTTCAAACTT+AGG | + | chr3.2:16140586-16140605 | MS.gene83812:intron | 25.0% |
| ! | TATGAAGACTTTACAATATC+TGG | + | chr3.2:16141091-16141110 | MS.gene83812:intron | 25.0% |
| ! | TATTGAATGATAAGAGTGAT+GGG | + | chr3.2:16141253-16141272 | MS.gene83812:intron | 25.0% |
| ! | TGAAAAGTTGAATATTATCG+AGG | - | chr3.2:16140279-16140298 | None:intergenic | 25.0% |
| ! | TTAACAACTATTAGAGAACA+AGG | - | chr3.2:16140530-16140549 | None:intergenic | 25.0% |
| ! | TTTGGATTATCAAATTGAGA+TGG | - | chr3.2:16139660-16139679 | None:intergenic | 25.0% |
| !! | AAAGCTTTAATTACTAGATC+AGG | - | chr3.2:16141143-16141162 | None:intergenic | 25.0% |
| !! | AAGCTTTAATTACTAGATCA+GGG | - | chr3.2:16141142-16141161 | None:intergenic | 25.0% |
| !! | AATTGTTAATGGTACTGAAT+TGG | + | chr3.2:16141171-16141190 | MS.gene83812:intron | 25.0% |
| !! | TGGAAAATAAATTTGAAGTC+TGG | - | chr3.2:16139922-16139941 | None:intergenic | 25.0% |
| !! | TTCTTATTTGTTAATCCCTT+TGG | + | chr3.2:16139990-16140009 | MS.gene83812:intron | 25.0% |
| !!! | AATAAGTTTTATACAGCCTT+TGG | + | chr3.2:16141482-16141501 | MS.gene83812:CDS | 25.0% |
| !!! | TCATGATATGTTTTGTTTCT+TGG | + | chr3.2:16140888-16140907 | MS.gene83812:intron | 25.0% |
| AATGAAAGAAGAAACTCATG+TGG | - | chr3.2:16139741-16139760 | None:intergenic | 30.0% | |
| ACTTATGCCTTCAAAATGTA+AGG | - | chr3.2:16140939-16140958 | None:intergenic | 30.0% | |
| AGCTTGCACAATACTATATT+AGG | - | chr3.2:16140825-16140844 | None:intergenic | 30.0% | |
| ATAATAGTAACCTTGAGACT+AGG | + | chr3.2:16140390-16140409 | MS.gene83812:intron | 30.0% | |
| ATTGAATGATAAGAGTGATG+GGG | + | chr3.2:16141254-16141273 | MS.gene83812:intron | 30.0% | |
| CATTCAATATGGTTGCAAAA+AGG | - | chr3.2:16141242-16141261 | None:intergenic | 30.0% | |
| GAATTCACCACCAATAATTA+AGG | - | chr3.2:16139787-16139806 | None:intergenic | 30.0% | |
| GATAATCTGCTATATCTATC+AGG | + | chr3.2:16140153-16140172 | MS.gene83812:CDS | 30.0% | |
| GGGAATCAAAGTACATTAAA+AGG | + | chr3.2:16140684-16140703 | MS.gene83812:CDS | 30.0% | |
| GTAATTCCCTTAATTATTGG+TGG | + | chr3.2:16139777-16139796 | MS.gene83812:intron | 30.0% | |
| GTATGAACAATTGTAGAGTA+GGG | + | chr3.2:16141045-16141064 | MS.gene83812:intron | 30.0% | |
| GTTAATCCCTTTGGATATAT+TGG | + | chr3.2:16139999-16140018 | MS.gene83812:intron | 30.0% | |
| TAATAGTAACCTTGAGACTA+GGG | + | chr3.2:16140391-16140410 | MS.gene83812:intron | 30.0% | |
| TCAAACTTAGGTTCAGAAAA+GGG | + | chr3.2:16140598-16140617 | MS.gene83812:intron | 30.0% | |
| TGTATGAACAATTGTAGAGT+AGG | + | chr3.2:16141044-16141063 | MS.gene83812:intron | 30.0% | |
| TGTGAACCAATATATCCAAA+GGG | - | chr3.2:16140008-16140027 | None:intergenic | 30.0% | |
| TTAATACCTCATGATCAAGT+TGG | - | chr3.2:16139629-16139648 | None:intergenic | 30.0% | |
| TTCAAACTTAGGTTCAGAAA+AGG | + | chr3.2:16140597-16140616 | MS.gene83812:intron | 30.0% | |
| TTGTGAACCAATATATCCAA+AGG | - | chr3.2:16140009-16140028 | None:intergenic | 30.0% | |
| ! | AAGGAGAGCATAATTTGATT+TGG | - | chr3.2:16139942-16139961 | None:intergenic | 30.0% |
| ! | ATGTGTACCTTACATTTTGA+AGG | + | chr3.2:16140929-16140948 | MS.gene83812:intron | 30.0% |
| !! | AGGTAATTTTTATTTGGACG+TGG | + | chr3.2:16140704-16140723 | MS.gene83812:intron | 30.0% |
| ACATTGTTCACCTTCAATAC+AGG | + | chr3.2:16139883-16139902 | MS.gene83812:intron | 35.0% | |
| ATGACGATAACAGTTTGAGA+TGG | + | chr3.2:16141384-16141403 | MS.gene83812:CDS | 35.0% | |
| ATGAGTTCCACATCATTCTA+AGG | - | chr3.2:16140067-16140086 | None:intergenic | 35.0% | |
| ATTATGCTCTCCTTAGAGAA+TGG | + | chr3.2:16139948-16139967 | MS.gene83812:intron | 35.0% | |
| CTGTTCAACAACAACACTTA+TGG | + | chr3.2:16139359-16139378 | MS.gene83812:CDS | 35.0% | |
| GAAGAAACTCATGTGGAATA+AGG | - | chr3.2:16139734-16139753 | None:intergenic | 35.0% | |
| GATGTGGAACTCATATATCT+AGG | + | chr3.2:16140073-16140092 | MS.gene83812:intron | 35.0% | |
| GCTGAAATTACCATTCTCTA+AGG | - | chr3.2:16139961-16139980 | None:intergenic | 35.0% | |
| TCTGTTCATAAAGGAATGCT+TGG | + | chr3.2:16141343-16141362 | MS.gene83812:CDS | 35.0% | |
| TGGAATAAGGTTTGCATCTA+TGG | - | chr3.2:16139721-16139740 | None:intergenic | 35.0% | |
| TTAGAGAACAAGGCTAATAG+TGG | - | chr3.2:16140520-16140539 | None:intergenic | 35.0% | |
| TTATCGAGGTTCAAATGCTT+CGG | - | chr3.2:16140265-16140284 | None:intergenic | 35.0% | |
| ! | AAGGAGAGCATAATCTGATT+TGG | - | chr3.2:16140048-16140067 | None:intergenic | 35.0% |
| ! | CATAAGTGTTGTTGTTGAAC+AGG | - | chr3.2:16139361-16139380 | None:intergenic | 35.0% |
| ! | CTCTAAAAATCACCTTCACT+TGG | + | chr3.2:16139859-16139878 | MS.gene83812:intron | 35.0% |
| ! | GAATTGGTTGATTTAGTAGC+TGG | + | chr3.2:16141187-16141206 | MS.gene83812:intron | 35.0% |
| ! | GATAACAGTTTGAGATGGAA+TGG | + | chr3.2:16141389-16141408 | MS.gene83812:CDS | 35.0% |
| ! | TTCAAGGTATTAGCATGTCA+GGG | + | chr3.2:16139685-16139704 | MS.gene83812:intron | 35.0% |
| !! | CAAGTGAAGGTGATTTTTAG+AGG | - | chr3.2:16139861-16139880 | None:intergenic | 35.0% |
| !! | GGATATATTGGTTCACAATG+TGG | + | chr3.2:16140011-16140030 | MS.gene83812:intron | 35.0% |
| !! | GTTGTAGCAACCTCTAAAAT+TGG | + | chr3.2:16140632-16140651 | MS.gene83812:CDS | 35.0% |
| !! | TGATGTGAAGACTACTTTTG+AGG | + | chr3.2:16139413-16139432 | MS.gene83812:CDS | 35.0% |
| AGGGTTGCACAAAAGTTTGT+AGG | + | chr3.2:16141428-16141447 | MS.gene83812:CDS | 40.0% | |
| ATGCTCTCCTTAGAATGATG+TGG | + | chr3.2:16140057-16140076 | MS.gene83812:intron | 40.0% | |
| CCTACCAACTGTTTGTAGAA+AGG | + | chr3.2:16139835-16139854 | MS.gene83812:intron | 40.0% | |
| CCTTTCTACAAACAGTTGGT+AGG | - | chr3.2:16139838-16139857 | None:intergenic | 40.0% | |
| CTAATACCTTGAAGTGCGTT+TGG | - | chr3.2:16139678-16139697 | None:intergenic | 40.0% | |
| CTCTTTCCAACTTGATCATG+AGG | + | chr3.2:16139620-16139639 | MS.gene83812:CDS | 40.0% | |
| GATAATCCAAACGCACTTCA+AGG | + | chr3.2:16139669-16139688 | MS.gene83812:CDS | 40.0% | |
| GATTCATCTATCCATTCCAC+CGG | + | chr3.2:16139488-16139507 | MS.gene83812:CDS | 40.0% | |
| GGTGGAATGGATAGATGAAT+CGG | - | chr3.2:16139489-16139508 | None:intergenic | 40.0% | |
| GTGAACAATGTTCCAAGTGA+AGG | - | chr3.2:16139874-16139893 | None:intergenic | 40.0% | |
| TCCATGCAGTCTGTTCATAA+AGG | + | chr3.2:16141334-16141353 | MS.gene83812:intron | 40.0% | |
| TCCTTTATGAACAGACTGCA+TGG | - | chr3.2:16141338-16141357 | None:intergenic | 40.0% | |
| TCTGGAAAAGTCTTGAGCTA+AGG | + | chr3.2:16141109-16141128 | MS.gene83812:intron | 40.0% | |
| ! | CTTCAAGGTATTAGCATGTC+AGG | + | chr3.2:16139684-16139703 | MS.gene83812:intron | 40.0% |
| AGGAACTAAATCCGGTGGAA+TGG | - | chr3.2:16139502-16139521 | None:intergenic | 45.0% | |
| ATGGACACGCCAAAATCGTT+TGG | + | chr3.2:16139378-16139397 | MS.gene83812:CDS | 45.0% | |
| CCAACTATGGAGACTCATTG+AGG | + | chr3.2:16140101-16140120 | MS.gene83812:CDS | 45.0% | |
| CCTCAATGAGTCTCCATAGT+TGG | - | chr3.2:16140104-16140123 | None:intergenic | 45.0% | |
| GAGGCCTTTCTACAAACAGT+TGG | - | chr3.2:16139842-16139861 | None:intergenic | 45.0% | |
| GGAATGGATAGATGAATCGG+AGG | - | chr3.2:16139486-16139505 | None:intergenic | 45.0% | |
| GTTGAACAACCCTAGTCTCA+AGG | - | chr3.2:16140403-16140422 | None:intergenic | 45.0% | |
| TAAACCGAGTGGTGTAACCA+CGG | - | chr3.2:16139549-16139568 | None:intergenic | 45.0% | |
| TATCTAGGTGCAGCCAACTA+TGG | + | chr3.2:16140088-16140107 | MS.gene83812:intron | 45.0% | |
| TGATCAGTGACAGCAACACT+CGG | + | chr3.2:16139595-16139614 | MS.gene83812:CDS | 45.0% | |
| ! | TTGCATCCGCCAAACGATTT+TGG | - | chr3.2:16139390-16139409 | None:intergenic | 45.0% |
| !! | ATGGTGCTGATCTATTGACG+AGG | + | chr3.2:16141408-16141427 | MS.gene83812:CDS | 45.0% |
| !! | TGGTGCTGATCTATTGACGA+GGG | + | chr3.2:16141409-16141428 | MS.gene83812:CDS | 45.0% |
| ATGAGGCAGAGCATGTGACA+TGG | + | chr3.2:16140663-16140682 | MS.gene83812:CDS | 50.0% | |
| GACACGCCAAAATCGTTTGG+CGG | + | chr3.2:16139381-16139400 | MS.gene83812:CDS | 50.0% | |
| GATCAGTGACAGCAACACTC+GGG | + | chr3.2:16139596-16139615 | MS.gene83812:CDS | 50.0% | |
| GGAACAGGAACTAAATCCGG+TGG | - | chr3.2:16139507-16139526 | None:intergenic | 50.0% | |
| GGCGGAACAGGAACTAAATC+CGG | - | chr3.2:16139510-16139529 | None:intergenic | 50.0% | |
| TGAGGCAGAGCATGTGACAT+GGG | + | chr3.2:16140664-16140683 | MS.gene83812:CDS | 50.0% | |
| TTGCTGTCACTGATCAGTGG+CGG | - | chr3.2:16139591-16139610 | None:intergenic | 50.0% | |
| ! | GTGTTGCTGTCACTGATCAG+TGG | - | chr3.2:16139594-16139613 | None:intergenic | 50.0% |
| ACCACCGTGGTTACACCACT+CGG | + | chr3.2:16139542-16139561 | MS.gene83812:CDS | 55.0% | |
| AGCCTCTGATCGTCGACCAA+GGG | + | chr3.2:16139451-16139470 | MS.gene83812:CDS | 55.0% | |
| ! | GTGGTGCTGGATAAACCGAG+TGG | - | chr3.2:16139560-16139579 | None:intergenic | 55.0% |
| ! | TCGGAGGCATGAAAACCCCT+TGG | - | chr3.2:16139470-16139489 | None:intergenic | 55.0% |
| ACCCCTTGGTCGACGATCAG+AGG | - | chr3.2:16139456-16139475 | None:intergenic | 60.0% | |
| ACCGAGTGGTGTAACCACGG+TGG | - | chr3.2:16139546-16139565 | None:intergenic | 60.0% | |
| ATCAGTGGCGGTGAGTCGAG+TGG | - | chr3.2:16139579-16139598 | None:intergenic | 60.0% | |
| GAGCCTCTGATCGTCGACCA+AGG | + | chr3.2:16139450-16139469 | MS.gene83812:CDS | 60.0% | |
| GCCTCTGATCGTCGACCAAG+GGG | + | chr3.2:16139452-16139471 | MS.gene83812:CDS | 60.0% | |
| TGTAACCACGGTGGTGCGAG+CGG | - | chr3.2:16139537-16139556 | None:intergenic | 60.0% | |
| AACCACGGTGGTGCGAGCGG+CGG | - | chr3.2:16139534-16139553 | None:intergenic | 70.0% | |
| GGCGGTGAGTCGAGTGGTGC+TGG | - | chr3.2:16139573-16139592 | None:intergenic | 70.0% | |
| ! | CACGGTGGTGCGAGCGGCGG+CGG | - | chr3.2:16139531-16139550 | None:intergenic | 80.0% |
| ! | CGCCGCCGCTCGCACCACCG+TGG | + | chr3.2:16139529-16139548 | MS.gene83812:CDS | 85.0% |
| ! | GCGAGCGGCGGCGGCGGAAC+AGG | - | chr3.2:16139522-16139541 | None:intergenic | 85.0% |
| ! | GGTGGTGCGAGCGGCGGCGG+CGG | - | chr3.2:16139528-16139547 | None:intergenic | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 16139342 | 16141511 | 16139342 | ID=MS.gene83812 |
| chr3.2 | mRNA | 16139342 | 16141511 | 16139342 | ID=MS.gene83812.t1;Parent=MS.gene83812 |
| chr3.2 | exon | 16139342 | 16139690 | 16139342 | ID=MS.gene83812.t1.exon1;Parent=MS.gene83812.t1 |
| chr3.2 | CDS | 16139342 | 16139690 | 16139342 | ID=cds.MS.gene83812.t1;Parent=MS.gene83812.t1 |
| chr3.2 | exon | 16140095 | 16140174 | 16140095 | ID=MS.gene83812.t1.exon2;Parent=MS.gene83812.t1 |
| chr3.2 | CDS | 16140095 | 16140174 | 16140095 | ID=cds.MS.gene83812.t1;Parent=MS.gene83812.t1 |
| chr3.2 | exon | 16140608 | 16140705 | 16140608 | ID=MS.gene83812.t1.exon3;Parent=MS.gene83812.t1 |
| chr3.2 | CDS | 16140608 | 16140705 | 16140608 | ID=cds.MS.gene83812.t1;Parent=MS.gene83812.t1 |
| chr3.2 | exon | 16141343 | 16141511 | 16141343 | ID=MS.gene83812.t1.exon4;Parent=MS.gene83812.t1 |
| chr3.2 | CDS | 16141343 | 16141511 | 16141343 | ID=cds.MS.gene83812.t1;Parent=MS.gene83812.t1 |
| Gene Sequence |
| Protein sequence |
