Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053953.t1 | KEH31062.1 | 98.6 | 145 | 2 | 0 | 1 | 145 | 1 | 145 | 6.60E-74 | 286.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053953.t1 | A0A072UMZ2 | 98.6 | 145 | 2 | 0 | 1 | 145 | 1 | 145 | 4.7e-74 | 286.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052867 | MS.gene053953 | 0.818407 | 1.99E-52 | -1.69E-46 |
| MS.gene053166 | MS.gene053953 | 0.803056 | 4.18E-49 | -1.69E-46 |
| MS.gene053953 | MS.gene054559 | 0.808055 | 3.74E-50 | -1.69E-46 |
| MS.gene053953 | MS.gene055818 | 0.800092 | 1.70E-48 | -1.69E-46 |
| MS.gene053953 | MS.gene056498 | 0.812172 | 4.85E-51 | -1.69E-46 |
| MS.gene053953 | MS.gene056506 | 0.8004 | 1.47E-48 | -1.69E-46 |
| MS.gene053953 | MS.gene057060 | 0.824077 | 9.81E-54 | -1.69E-46 |
| MS.gene053953 | MS.gene058625 | 0.815918 | 7.23E-52 | -1.69E-46 |
| MS.gene053953 | MS.gene05954 | 0.809431 | 1.90E-50 | -1.69E-46 |
| MS.gene053953 | MS.gene060572 | 0.801763 | 7.72E-49 | -1.69E-46 |
| MS.gene053953 | MS.gene061380 | 0.807745 | 4.35E-50 | -1.69E-46 |
| MS.gene053953 | MS.gene06269 | 0.813077 | 3.07E-51 | -1.69E-46 |
| MS.gene053953 | MS.gene066264 | 0.829039 | 6.43E-55 | -1.69E-46 |
| MS.gene053953 | MS.gene066267 | 0.814618 | 1.41E-51 | -1.69E-46 |
| MS.gene053953 | MS.gene067932 | 0.801638 | 8.19E-49 | -1.69E-46 |
| MS.gene053953 | MS.gene068385 | 0.821593 | 3.72E-53 | -1.69E-46 |
| MS.gene053953 | MS.gene070899 | 0.813832 | 2.10E-51 | -1.69E-46 |
| MS.gene053953 | MS.gene070901 | 0.82301 | 1.74E-53 | -1.69E-46 |
| MS.gene053953 | MS.gene071457 | 0.803579 | 3.26E-49 | -1.69E-46 |
| MS.gene053953 | MS.gene073008 | 0.802934 | 4.43E-49 | -1.69E-46 |
| MS.gene053953 | MS.gene073139 | 0.800517 | 1.39E-48 | -1.69E-46 |
| MS.gene053953 | MS.gene08862 | 0.80718 | 5.73E-50 | -1.69E-46 |
| MS.gene053953 | MS.gene09952 | 0.800335 | 1.51E-48 | -1.69E-46 |
| MS.gene053953 | MS.gene21149 | 0.800728 | 1.26E-48 | -1.69E-46 |
| MS.gene053953 | MS.gene23304 | 0.807767 | 4.30E-50 | -1.69E-46 |
| MS.gene053953 | MS.gene23305 | 0.806191 | 9.27E-50 | -1.69E-46 |
| MS.gene053953 | MS.gene23546 | 0.817078 | 3.97E-52 | -1.69E-46 |
| MS.gene053953 | MS.gene25778 | 0.805027 | 1.63E-49 | -1.69E-46 |
| MS.gene053953 | MS.gene28514 | 0.808563 | 2.91E-50 | -1.69E-46 |
| MS.gene053953 | MS.gene28652 | 0.801197 | 1.01E-48 | -1.69E-46 |
| MS.gene053953 | MS.gene30970 | 0.810649 | 1.04E-50 | -1.69E-46 |
| MS.gene053953 | MS.gene31142 | 0.809176 | 2.15E-50 | -1.69E-46 |
| MS.gene053953 | MS.gene31283 | 0.811396 | 7.15E-51 | -1.69E-46 |
| MS.gene053953 | MS.gene33624 | 0.807769 | 4.30E-50 | -1.69E-46 |
| MS.gene053953 | MS.gene35967 | 0.81121 | 7.85E-51 | -1.69E-46 |
| MS.gene053953 | MS.gene40048 | 0.804013 | 2.65E-49 | -1.69E-46 |
| MS.gene053953 | MS.gene42645 | 0.816308 | 5.91E-52 | -1.69E-46 |
| MS.gene053953 | MS.gene44986 | 0.802461 | 5.55E-49 | -1.69E-46 |
| MS.gene053953 | MS.gene51511 | 0.804062 | 2.59E-49 | -1.69E-46 |
| MS.gene053953 | MS.gene51836 | 0.80494 | 1.70E-49 | -1.69E-46 |
| MS.gene053953 | MS.gene52060 | 0.800595 | 1.34E-48 | -1.69E-46 |
| MS.gene053953 | MS.gene52130 | 0.801235 | 9.91E-49 | -1.69E-46 |
| MS.gene053953 | MS.gene53586 | 0.812922 | 3.32E-51 | -1.69E-46 |
| MS.gene053953 | MS.gene53924 | 0.807009 | 6.23E-50 | -1.69E-46 |
| MS.gene053953 | MS.gene55540 | 0.833594 | 4.88E-56 | -1.69E-46 |
| MS.gene053953 | MS.gene56468 | 0.809451 | 1.88E-50 | -1.69E-46 |
| MS.gene053953 | MS.gene58686 | 0.813051 | 3.11E-51 | -1.69E-46 |
| MS.gene053953 | MS.gene64249 | 0.833053 | 6.65E-56 | -1.69E-46 |
| MS.gene053953 | MS.gene66474 | 0.814612 | 1.41E-51 | -1.69E-46 |
| MS.gene053953 | MS.gene72268 | 0.824023 | 1.01E-53 | -1.69E-46 |
| MS.gene053953 | MS.gene75184 | 0.815812 | 7.63E-52 | -1.69E-46 |
| MS.gene053953 | MS.gene77588 | 0.80788 | 4.07E-50 | -1.69E-46 |
| MS.gene053953 | MS.gene78775 | 0.81083 | 9.48E-51 | -1.69E-46 |
| MS.gene053953 | MS.gene81375 | 0.823456 | 1.37E-53 | -1.69E-46 |
| MS.gene053953 | MS.gene83091 | 0.808328 | 3.27E-50 | -1.69E-46 |
| MS.gene053953 | MS.gene83734 | 0.808497 | 3.01E-50 | -1.69E-46 |
| MS.gene053953 | MS.gene83812 | 0.804574 | 2.02E-49 | -1.69E-46 |
| MS.gene053953 | MS.gene85663 | 0.81006 | 1.39E-50 | -1.69E-46 |
| MS.gene053953 | MS.gene88091 | 0.815485 | 9.02E-52 | -1.69E-46 |
| MS.gene053953 | MS.gene88243 | 0.806782 | 6.96E-50 | -1.69E-46 |
| MS.gene053953 | MS.gene93041 | 0.825234 | 5.24E-54 | -1.69E-46 |
| MS.gene053953 | MS.gene93764 | 0.809905 | 1.50E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053953.t1 | MTR_4g088775 | 98.621 | 145 | 2 | 0 | 1 | 145 | 1 | 145 | 9.04e-104 | 293 |
| MS.gene053953.t1 | MTR_4g088775 | 98.621 | 145 | 2 | 0 | 1 | 145 | 1 | 145 | 9.99e-104 | 293 |
| MS.gene053953.t1 | MTR_0227s0030 | 97.931 | 145 | 3 | 0 | 1 | 145 | 258 | 402 | 1.31e-102 | 300 |
| MS.gene053953.t1 | MTR_4g073910 | 92.593 | 135 | 6 | 1 | 4 | 138 | 20 | 150 | 2.60e-86 | 249 |
| MS.gene053953.t1 | MTR_4g073910 | 93.077 | 130 | 5 | 1 | 9 | 138 | 1 | 126 | 7.83e-83 | 239 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053953.t1 | AT4G04190 | 81.379 | 145 | 27 | 0 | 1 | 145 | 1 | 145 | 1.69e-86 | 251 |
| MS.gene053953.t1 | AT4G04190 | 77.174 | 92 | 21 | 0 | 54 | 145 | 4 | 95 | 2.20e-47 | 150 |
| MS.gene053953.t1 | AT4G04190 | 73.529 | 68 | 18 | 0 | 78 | 145 | 2 | 69 | 6.42e-29 | 102 |
Find 45 sgRNAs with CRISPR-Local
Find 172 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAAGATAGTGAATTTAAAT+TGG | 0.175585 | 5.3:+41121827 | MS.gene053953:CDS |
| AGCACATGGGAGGCTATTTC+TGG | 0.190004 | 5.3:-41120125 | None:intergenic |
| GATTCTTGCTAGTGGAGTTC+AGG | 0.278444 | 5.3:+41122519 | MS.gene053953:CDS |
| AGGTATGGAGGAAACAATTT+TGG | 0.283816 | 5.3:+41120058 | MS.gene053953:CDS |
| GCAATCTCGTCTTGACAAAA+TGG | 0.308585 | 5.3:-41121525 | None:intergenic |
| GCTATTTCTGGTGGTACTAT+TGG | 0.311815 | 5.3:-41120113 | None:intergenic |
| CAATGATCTCACCCTTCTTT+CGG | 0.354267 | 5.3:-41121565 | None:intergenic |
| CAAGATAGTGAATTTAAATT+GGG | 0.391075 | 5.3:+41121828 | MS.gene053953:CDS |
| TATGGATGATAAACATTACT+TGG | 0.412292 | 5.3:-41122593 | None:intergenic |
| ATTTCAGTTGATTCGCAGCC+AGG | 0.420437 | 5.3:+41120038 | MS.gene053953:intron |
| CTCTCCTTGGCTGCATCTAA+AGG | 0.430287 | 5.3:-41121861 | None:intergenic |
| TGAGGCAGAAGTTACATCAT+TGG | 0.440927 | 5.3:+41121896 | MS.gene053953:CDS |
| ATTCTTGCTAGTGGAGTTCA+GGG | 0.446759 | 5.3:+41122520 | MS.gene053953:CDS |
| ATAGCCTCCCATGTGCTTCA+AGG | 0.447424 | 5.3:+41120131 | MS.gene053953:CDS |
| ATAAACAATGTGCCGAAAGA+AGG | 0.457313 | 5.3:+41121553 | MS.gene053953:CDS |
| GGTTGGTGATGATCTAATGA+TGG | 0.465679 | 5.3:+41120079 | MS.gene053953:CDS |
| AGTTGATTCGCAGCCAGGTA+TGG | 0.476882 | 5.3:+41120043 | MS.gene053953:intron |
| AGTGGAGTTCAGGGCATTGA+AGG | 0.478999 | 5.3:+41122529 | MS.gene053953:CDS |
| CGCACAAGATGGAGCTTGCA+TGG | 0.489197 | 5.3:+41122556 | MS.gene053953:CDS |
| ATCTATGTGATGGAATTCTC+AGG | 0.510279 | 5.3:+41120159 | MS.gene053953:CDS |
| AACATTACTTGGAATCAGTA+AGG | 0.517254 | 5.3:-41122582 | None:intergenic |
| TAAACAATGTGCCGAAAGAA+GGG | 0.518672 | 5.3:+41121554 | MS.gene053953:CDS |
| AAAATTGTTTCCTCCATACC+TGG | 0.521815 | 5.3:-41120056 | None:intergenic |
| AAATGCAGGATAAGGAGATA+AGG | 0.531303 | 5.3:+41121796 | MS.gene053953:intron |
| TTGAAGGTTTCCGCACAAGA+TGG | 0.534765 | 5.3:+41122545 | MS.gene053953:CDS |
| TCTGGTGGTACTATTGGTGA+TGG | 0.539852 | 5.3:-41120107 | None:intergenic |
| AGGCGCTTGATTCTTGCTAG+TGG | 0.550829 | 5.3:+41122511 | MS.gene053953:intron |
| GATCAGCACCTTGAAGCACA+TGG | 0.556052 | 5.3:-41120139 | None:intergenic |
| TGCCAGAAAGCAACCATGGA+TGG | 0.563977 | 5.3:+41119922 | None:intergenic |
| ATGAGATCACATACCATCCA+TGG | 0.565066 | 5.3:-41119935 | None:intergenic |
| AAGCTGAGTAGACCTCTCCT+TGG | 0.576407 | 5.3:-41121874 | None:intergenic |
| GTTGGTGATGATCTAATGAT+GGG | 0.590636 | 5.3:+41120080 | MS.gene053953:CDS |
| CTTTAGATGCAGCCAAGGAG+AGG | 0.605785 | 5.3:+41121862 | MS.gene053953:CDS |
| CAAGGTGCTGATCTATGTGA+TGG | 0.611898 | 5.3:+41120149 | MS.gene053953:CDS |
| GGAGAGGTCTACTCAGCTTG+AGG | 0.616954 | 5.3:+41121878 | MS.gene053953:CDS |
| AGGATAAGGAGATAAGGAAA+CGG | 0.617405 | 5.3:+41121802 | MS.gene053953:intron |
| CAGAAGTTACATCATTGGAA+AGG | 0.618977 | 5.3:+41121901 | MS.gene053953:CDS |
| TGATTCGCAGCCAGGTATGG+AGG | 0.623014 | 5.3:+41120046 | MS.gene053953:CDS |
| CATGCAAGCTCCATCTTGTG+CGG | 0.626079 | 5.3:-41122555 | None:intergenic |
| ATCAGCACCTTGAAGCACAT+GGG | 0.628214 | 5.3:-41120138 | None:intergenic |
| GGTGGTACTATTGGTGATGG+AGG | 0.632079 | 5.3:-41120104 | None:intergenic |
| AATGCCTTTAGATGCAGCCA+AGG | 0.636287 | 5.3:+41121857 | MS.gene053953:CDS |
| AGCACCTTGAAGCACATGGG+AGG | 0.662850 | 5.3:-41120135 | None:intergenic |
| ACATGGGAGGCTATTTCTGG+TGG | 0.667115 | 5.3:-41120122 | None:intergenic |
| ATTACTTGGAATCAGTAAGG+CGG | 0.723469 | 5.3:-41122579 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAAAAAAAAAAAAAAAAA+AGG | - | chr5.3:41120558-41120577 | None:intergenic | 0.0% |
| !!! | GATATTAAATTTTTTATCAA+AGG | + | chr5.3:41122215-41122234 | MS.gene053953:intron | 10.0% |
| !! | AAGATTGAGATAAAAAATAA+GGG | - | chr5.3:41120213-41120232 | None:intergenic | 15.0% |
| !! | TTTAAATCTAAACTAGATTA+TGG | - | chr5.3:41121195-41121214 | None:intergenic | 15.0% |
| !! | TTTGAAAAAAAAAAAAATGC+AGG | + | chr5.3:41121782-41121801 | MS.gene053953:intron | 15.0% |
| !!! | ATGTTGAAATATTTTATATC+TGG | + | chr5.3:41122391-41122410 | MS.gene053953:intron | 15.0% |
| !!! | GGATTTTATTTTGAAATTTT+CGG | + | chr5.3:41122423-41122442 | MS.gene053953:intron | 15.0% |
| !!! | TCTTTTTTTCAAATCAAAAT+GGG | + | chr5.3:41119990-41120009 | MS.gene053953:intron | 15.0% |
| !!! | TTCTTTTTTTCAAATCAAAA+TGG | + | chr5.3:41119989-41120008 | MS.gene053953:intron | 15.0% |
| !!! | TTTGATTTGAAAAAAAGAAT+CGG | - | chr5.3:41119988-41120007 | None:intergenic | 15.0% |
| !! | AAAAAAAAAAATGCAGGATA+AGG | + | chr5.3:41121788-41121807 | MS.gene053953:intron | 20.0% |
| !! | AAAAATTATAGCACATAATC+TGG | + | chr5.3:41122461-41122480 | MS.gene053953:intron | 20.0% |
| !! | AATGAAACAAAACAAAATGA+TGG | - | chr5.3:41121756-41121775 | None:intergenic | 20.0% |
| !! | ATGTTGAAATTGTTCATAAA+AGG | - | chr5.3:41121667-41121686 | None:intergenic | 20.0% |
| !! | ATTAAATTCATAATTGCACT+TGG | + | chr5.3:41122277-41122296 | MS.gene053953:intron | 20.0% |
| !! | CAAGATAGTGAATTTAAATT+GGG | + | chr5.3:41121828-41121847 | MS.gene053953:CDS | 20.0% |
| !! | GAAGATTGAGATAAAAAATA+AGG | - | chr5.3:41120214-41120233 | None:intergenic | 20.0% |
| !! | TCAAGATAGTGAATTTAAAT+TGG | + | chr5.3:41121827-41121846 | MS.gene053953:CDS | 20.0% |
| !!! | ATTAGCTTTACAAAAGATAA+GGG | - | chr5.3:41120868-41120887 | None:intergenic | 20.0% |
| !!! | ATTTTCAAATAATTGCTATG+TGG | + | chr5.3:41121925-41121944 | MS.gene053953:intron | 20.0% |
| !!! | ATTTTGTATGATTGAAAAAG+TGG | + | chr5.3:41121256-41121275 | MS.gene053953:intron | 20.0% |
| !!! | GGAATTTTATTTATATGTGT+GGG | + | chr5.3:41120011-41120030 | MS.gene053953:intron | 20.0% |
| !!! | TAAGCTTCATTCATAATTTT+AGG | + | chr5.3:41121480-41121499 | MS.gene053953:intron | 20.0% |
| !!! | TATCTTTTTTCTCAAAAACT+GGG | + | chr5.3:41120995-41121014 | MS.gene053953:intron | 20.0% |
| !!! | TATTAGCTTTACAAAAGATA+AGG | - | chr5.3:41120869-41120888 | None:intergenic | 20.0% |
| !!! | TTTGGCCTTTATAATTTATT+GGG | + | chr5.3:41121319-41121338 | MS.gene053953:intron | 20.0% |
| !!! | TTTTATATCTGGTTATCATA+AGG | + | chr5.3:41122402-41122421 | MS.gene053953:intron | 20.0% |
| !!! | TTTTGGCCTTTATAATTTAT+TGG | + | chr5.3:41121318-41121337 | MS.gene053953:intron | 20.0% |
| !!! | TTTTTTTTAACTAAGTGACT+CGG | + | chr5.3:41120569-41120588 | MS.gene053953:intron | 20.0% |
| ! | AAATTATAAAGGCCAAAAAG+TGG | - | chr5.3:41121316-41121335 | None:intergenic | 25.0% |
| ! | AACTTCTAACATTTATCAGT+GGG | - | chr5.3:41121386-41121405 | None:intergenic | 25.0% |
| ! | AAGTTGAAGTAATTAAGAGA+GGG | - | chr5.3:41121636-41121655 | None:intergenic | 25.0% |
| ! | ATTTAATATCCATCTCCAAA+TGG | - | chr5.3:41122205-41122224 | None:intergenic | 25.0% |
| ! | GACACGTTCAATTATAAAAT+TGG | - | chr5.3:41122159-41122178 | None:intergenic | 25.0% |
| ! | TAACTTCTAACATTTATCAG+TGG | - | chr5.3:41121387-41121406 | None:intergenic | 25.0% |
| ! | TAAGATTCCAAAGAAATTTC+TGG | + | chr5.3:41122048-41122067 | MS.gene053953:intron | 25.0% |
| ! | TCAGACCCAATAAATTATAA+AGG | - | chr5.3:41121327-41121346 | None:intergenic | 25.0% |
| ! | TTAGGAAAAAATCATCTTCA+AGG | - | chr5.3:41122031-41122050 | None:intergenic | 25.0% |
| !! | CTTTTGTAAAGCTAATAAGA+GGG | + | chr5.3:41120872-41120891 | MS.gene053953:intron | 25.0% |
| !! | GAGAAAAGTATAGAATTAGA+TGG | + | chr5.3:41120507-41120526 | MS.gene053953:intron | 25.0% |
| !! | TAAGTTGAAGTAATTAAGAG+AGG | - | chr5.3:41121637-41121656 | None:intergenic | 25.0% |
| !! | TCTTTTGTAAAGCTAATAAG+AGG | + | chr5.3:41120871-41120890 | MS.gene053953:intron | 25.0% |
| !! | TTTTGTAAAGCTAATAAGAG+GGG | + | chr5.3:41120873-41120892 | MS.gene053953:intron | 25.0% |
| !!! | AACATCTCCAAAAGTATTTT+TGG | - | chr5.3:41120339-41120358 | None:intergenic | 25.0% |
| !!! | AGAAATTTCTTTGGAATCTT+AGG | - | chr5.3:41122049-41122068 | None:intergenic | 25.0% |
| !!! | ATTTTGAAATTTTCGGTGTA+TGG | + | chr5.3:41122430-41122449 | MS.gene053953:intron | 25.0% |
| !!! | CTATCTTTTTTCTCAAAAAC+TGG | + | chr5.3:41120994-41121013 | MS.gene053953:intron | 25.0% |
| !!! | GGGAATTTTATTTATATGTG+TGG | + | chr5.3:41120010-41120029 | MS.gene053953:intron | 25.0% |
| !!! | TTTTGGAGATGTTTATGAAA+GGG | + | chr5.3:41120346-41120365 | MS.gene053953:intron | 25.0% |
| AAAACTGGGATAAATAGGTT+AGG | + | chr5.3:41121009-41121028 | MS.gene053953:intron | 30.0% | |
| AATTAGTGTGAAAGCTAAAG+TGG | - | chr5.3:41122351-41122370 | None:intergenic | 30.0% | |
| ACATGTTGTTAAAGATTTGC+TGG | + | chr5.3:41121083-41121102 | MS.gene053953:intron | 30.0% | |
| ATGATGGTAGATCTAACAAA+CGG | - | chr5.3:41121740-41121759 | None:intergenic | 30.0% | |
| ATTGCAAAAAACTTTGTCTG+AGG | - | chr5.3:41121144-41121163 | None:intergenic | 30.0% | |
| GCTATTCATTTCAAATGTAC+AGG | + | chr5.3:41122491-41122510 | MS.gene053953:intron | 30.0% | |
| TCTCAAAAACTGGGATAAAT+AGG | + | chr5.3:41121004-41121023 | MS.gene053953:intron | 30.0% | |
| TTGGAAGAACAATATACTGT+CGG | - | chr5.3:41122140-41122159 | None:intergenic | 30.0% | |
| TTGTCTTAGTAGAAGACATT+GGG | + | chr5.3:41120644-41120663 | MS.gene053953:intron | 30.0% | |
| ! | ACATAGCATTGTTTTCGTAA+TGG | + | chr5.3:41121214-41121233 | MS.gene053953:intron | 30.0% |
| ! | CATGTTGTTAAAGATTTGCT+GGG | + | chr5.3:41121084-41121103 | MS.gene053953:intron | 30.0% |
| ! | CTTTTTGTGTAGGTTTAGAA+TGG | + | chr5.3:41120437-41120456 | MS.gene053953:intron | 30.0% |
| ! | GAGATCATTGTTGTTAGTTA+TGG | + | chr5.3:41121578-41121597 | MS.gene053953:intron | 30.0% |
| ! | TTCCTCTCCAAAAATACTTT+TGG | + | chr5.3:41120329-41120348 | MS.gene053953:intron | 30.0% |
| !! | AAAAATGAGTGACCACTTTT+TGG | + | chr5.3:41121301-41121320 | MS.gene053953:intron | 30.0% |
| !! | CTTTTGGAGATGTTTATGAA+AGG | + | chr5.3:41120345-41120364 | MS.gene053953:intron | 30.0% |
| !!! | TCAGACAAAGTTTTTTGCAA+TGG | + | chr5.3:41121143-41121162 | MS.gene053953:intron | 30.0% |
| AAAATTGTTTCCTCCATACC+TGG | - | chr5.3:41120059-41120078 | None:intergenic | 35.0% | |
| AAATGCAGGATAAGGAGATA+AGG | + | chr5.3:41121796-41121815 | MS.gene053953:intron | 35.0% | |
| ACGGTCTTCAATATTTCGAT+TGG | + | chr5.3:41122308-41122327 | MS.gene053953:intron | 35.0% | |
| AGGATAAGGAGATAAGGAAA+CGG | + | chr5.3:41121802-41121821 | MS.gene053953:intron | 35.0% | |
| AGGTCTTTCTAAGTTAGTTG+AGG | + | chr5.3:41120777-41120796 | MS.gene053953:intron | 35.0% | |
| ATAAACAATGTGCCGAAAGA+AGG | + | chr5.3:41121553-41121572 | MS.gene053953:CDS | 35.0% | |
| ATCTTCACTCTTCACTGTAT+CGG | + | chr5.3:41120228-41120247 | MS.gene053953:intron | 35.0% | |
| ATTGCACTTGGATTTCCTTA+CGG | + | chr5.3:41122289-41122308 | MS.gene053953:intron | 35.0% | |
| CACACTAATTATTTGACGCA+CGG | + | chr5.3:41122361-41122380 | MS.gene053953:intron | 35.0% | |
| CAGAAGTTACATCATTGGAA+AGG | + | chr5.3:41121901-41121920 | MS.gene053953:CDS | 35.0% | |
| CTAAGCAAAGAAACATTCTC+TGG | - | chr5.3:41121970-41121989 | None:intergenic | 35.0% | |
| CTGAACTCCAGAAATTTCTT+TGG | - | chr5.3:41122058-41122077 | None:intergenic | 35.0% | |
| CTTACATCTAGTTAGGTTAC+TGG | + | chr5.3:41120917-41120936 | MS.gene053953:intron | 35.0% | |
| CTTGTCTTAGTAGAAGACAT+TGG | + | chr5.3:41120643-41120662 | MS.gene053953:intron | 35.0% | |
| GAATATACTGTGCTCAAGTA+AGG | - | chr5.3:41122242-41122261 | None:intergenic | 35.0% | |
| GTATGAGCTTACATCTAGTT+AGG | + | chr5.3:41120910-41120929 | MS.gene053953:intron | 35.0% | |
| TAAACAATGTGCCGAAAGAA+GGG | + | chr5.3:41121554-41121573 | MS.gene053953:CDS | 35.0% | |
| TAATATCCATCTCCAAATGG+TGG | - | chr5.3:41122202-41122221 | None:intergenic | 35.0% | |
| TCGAAATATTGAAGACCGTA+AGG | - | chr5.3:41122307-41122326 | None:intergenic | 35.0% | |
| TCTGGACAATTTAGCAAACA+CGG | - | chr5.3:41121952-41121971 | None:intergenic | 35.0% | |
| TGAGATGTGTGCATTGAAAA+AGG | + | chr5.3:41120609-41120628 | MS.gene053953:intron | 35.0% | |
| TGTCTTAGTAGAAGACATTG+GGG | + | chr5.3:41120645-41120664 | MS.gene053953:intron | 35.0% | |
| TTGAAGTAATTAAGAGAGGG+AGG | - | chr5.3:41121633-41121652 | None:intergenic | 35.0% | |
| TTGAGAAAGTTCAAAGCAAG+AGG | + | chr5.3:41120757-41120776 | MS.gene053953:intron | 35.0% | |
| ! | AGGTATGGAGGAAACAATTT+TGG | + | chr5.3:41120058-41120077 | MS.gene053953:CDS | 35.0% |
| ! | ATCTATGTGATGGAATTCTC+AGG | + | chr5.3:41120159-41120178 | MS.gene053953:CDS | 35.0% |
| ! | CTGTAATGAGCTTTTTGTGT+AGG | + | chr5.3:41120427-41120446 | MS.gene053953:intron | 35.0% |
| !! | ATAAGGGTGTCATCTGAATA+TGG | - | chr5.3:41120852-41120871 | None:intergenic | 35.0% |
| !! | ATGGAGGAAACAATTTTGGT+TGG | + | chr5.3:41120062-41120081 | MS.gene053953:CDS | 35.0% |
| !! | ATTTTTGGAGAGGAATCAGA+AGG | - | chr5.3:41120324-41120343 | None:intergenic | 35.0% |
| !! | GTTGGTGATGATCTAATGAT+GGG | + | chr5.3:41120080-41120099 | MS.gene053953:CDS | 35.0% |
| !!! | CTCCAAAAGTATTTTTGGAG+AGG | - | chr5.3:41120334-41120353 | None:intergenic | 35.0% |
| !!! | GTTAGGCATCTTTTTTGTGT+GGG | + | chr5.3:41121026-41121045 | MS.gene053953:intron | 35.0% |
| AAGTAATTAAGAGAGGGAGG+AGG | - | chr5.3:41121630-41121649 | None:intergenic | 40.0% | |
| ACAAAATCGCAAGAACCACA+GGG | - | chr5.3:41121243-41121262 | None:intergenic | 40.0% | |
| ACAGAAAAGTGAAGGGACAA+AGG | - | chr5.3:41120733-41120752 | None:intergenic | 40.0% | |
| AGAATTAGATGGCACGCTAA+GGG | + | chr5.3:41120518-41120537 | MS.gene053953:intron | 40.0% | |
| AGCTAAGATAATGAACCACG+TGG | - | chr5.3:41121172-41121191 | None:intergenic | 40.0% | |
| ATTCTTGCTAGTGGAGTTCA+GGG | + | chr5.3:41122520-41122539 | MS.gene053953:CDS | 40.0% | |
| CAACCAGACAGAAAAGTGAA+GGG | - | chr5.3:41120740-41120759 | None:intergenic | 40.0% | |
| CAATGATCTCACCCTTCTTT+CGG | - | chr5.3:41121568-41121587 | None:intergenic | 40.0% | |
| CAGAAAAGTGAAGGGACAAA+GGG | - | chr5.3:41120732-41120751 | None:intergenic | 40.0% | |
| CTTTGCTTAGCATAACCTGA+GGG | + | chr5.3:41121980-41121999 | MS.gene053953:intron | 40.0% | |
| GCAAAAAACTTTGTCTGAGG+AGG | - | chr5.3:41121141-41121160 | None:intergenic | 40.0% | |
| GCAATCTCGTCTTGACAAAA+TGG | - | chr5.3:41121528-41121547 | None:intergenic | 40.0% | |
| GCTAAGATAATGAACCACGT+GGG | - | chr5.3:41121171-41121190 | None:intergenic | 40.0% | |
| TACAAAATCGCAAGAACCAC+AGG | - | chr5.3:41121244-41121263 | None:intergenic | 40.0% | |
| TAGAATTAGATGGCACGCTA+AGG | + | chr5.3:41120517-41120536 | MS.gene053953:intron | 40.0% | |
| TCAACCAGACAGAAAAGTGA+AGG | - | chr5.3:41120741-41120760 | None:intergenic | 40.0% | |
| TCCTCTTGAAAAGAAAGAGC+CGG | - | chr5.3:41120479-41120498 | None:intergenic | 40.0% | |
| TCTTTGCTTAGCATAACCTG+AGG | + | chr5.3:41121979-41121998 | MS.gene053953:intron | 40.0% | |
| TGACAAGAGTGGAGAGATTA+AGG | + | chr5.3:41121344-41121363 | MS.gene053953:intron | 40.0% | |
| TGAGGCAGAAGTTACATCAT+TGG | + | chr5.3:41121896-41121915 | MS.gene053953:CDS | 40.0% | |
| TGAGTTCAAATGCCACCATT+TGG | + | chr5.3:41122187-41122206 | MS.gene053953:intron | 40.0% | |
| TTTATTGGGTCTGACAAGAG+TGG | + | chr5.3:41121333-41121352 | MS.gene053953:intron | 40.0% | |
| ! | GAGAGATTAAGGTATTAGCC+AGG | + | chr5.3:41121355-41121374 | MS.gene053953:intron | 40.0% |
| !! | AGTTAGCTTCATTTTCCCTC+AGG | - | chr5.3:41121998-41122017 | None:intergenic | 40.0% |
| !! | ATTTATCAGTGGGTTGAACC+TGG | - | chr5.3:41121376-41121395 | None:intergenic | 40.0% |
| !! | CTCTAAGACATTCCATCAGA+GGG | - | chr5.3:41120813-41120832 | None:intergenic | 40.0% |
| !! | GCTATTTCTGGTGGTACTAT+TGG | - | chr5.3:41120116-41120135 | None:intergenic | 40.0% |
| !! | GGTTGGTGATGATCTAATGA+TGG | + | chr5.3:41120079-41120098 | MS.gene053953:CDS | 40.0% |
| !!! | GGTTAGGCATCTTTTTTGTG+TGG | + | chr5.3:41121025-41121044 | MS.gene053953:intron | 40.0% |
| AAAACTTTGTCTGAGGAGGC+AGG | - | chr5.3:41121137-41121156 | None:intergenic | 45.0% | |
| AATGCCTTTAGATGCAGCCA+AGG | + | chr5.3:41121857-41121876 | MS.gene053953:CDS | 45.0% | |
| AATTAGATGGCACGCTAAGG+GGG | + | chr5.3:41120520-41120539 | MS.gene053953:intron | 45.0% | |
| ATCAGCACCTTGAAGCACAT+GGG | - | chr5.3:41120141-41120160 | None:intergenic | 45.0% | |
| CAAAATCGCAAGAACCACAG+GGG | - | chr5.3:41121242-41121261 | None:intergenic | 45.0% | |
| CAAATGCCACCATTTGGAGA+TGG | + | chr5.3:41122193-41122212 | MS.gene053953:intron | 45.0% | |
| CCTCTGATGGAATGTCTTAG+AGG | + | chr5.3:41120811-41120830 | MS.gene053953:intron | 45.0% | |
| GAATTAGATGGCACGCTAAG+GGG | + | chr5.3:41120519-41120538 | MS.gene053953:intron | 45.0% | |
| GATTCTTGCTAGTGGAGTTC+AGG | + | chr5.3:41122519-41122538 | MS.gene053953:CDS | 45.0% | |
| TAATTAAGAGAGGGAGGAGG+AGG | - | chr5.3:41121627-41121646 | None:intergenic | 45.0% | |
| TCTGGTGGTACTATTGGTGA+TGG | - | chr5.3:41120110-41120129 | None:intergenic | 45.0% | |
| TTGAAGGTTTCCGCACAAGA+TGG | + | chr5.3:41122545-41122564 | MS.gene053953:CDS | 45.0% | |
| ! | CAAGATGAAATCGACTCTCG+TGG | + | chr5.3:41120401-41120420 | MS.gene053953:intron | 45.0% |
| ! | GGTGTCATCTGAATATGGCT+AGG | - | chr5.3:41120847-41120866 | None:intergenic | 45.0% |
| !! | ATTTCAGTTGATTCGCAGCC+AGG | + | chr5.3:41120038-41120057 | MS.gene053953:intron | 45.0% |
| !! | CAAGGTGCTGATCTATGTGA+TGG | + | chr5.3:41120149-41120168 | MS.gene053953:CDS | 45.0% |
| !! | CCTCTAAGACATTCCATCAG+AGG | - | chr5.3:41120814-41120833 | None:intergenic | 45.0% |
| !! | TGTCCCTTCACTTTTCTGTC+TGG | + | chr5.3:41120734-41120753 | MS.gene053953:intron | 45.0% |
| !!! | ATATTAAATTTTTTATCAAA+GGG | + | chr5.3:41122216-41122235 | MS.gene053953:intron | 5.0% |
| AAGCTGAGTAGACCTCTCCT+TGG | - | chr5.3:41121877-41121896 | None:intergenic | 50.0% | |
| AGGCGCTTGATTCTTGCTAG+TGG | + | chr5.3:41122511-41122530 | MS.gene053953:intron | 50.0% | |
| ATAGCCTCCCATGTGCTTCA+AGG | + | chr5.3:41120131-41120150 | MS.gene053953:CDS | 50.0% | |
| CATGCAAGCTCCATCTTGTG+CGG | - | chr5.3:41122558-41122577 | None:intergenic | 50.0% | |
| CTCTCCTTGGCTGCATCTAA+AGG | - | chr5.3:41121864-41121883 | None:intergenic | 50.0% | |
| CTTTAGATGCAGCCAAGGAG+AGG | + | chr5.3:41121862-41121881 | MS.gene053953:CDS | 50.0% | |
| GATCAGCACCTTGAAGCACA+TGG | - | chr5.3:41120142-41120161 | None:intergenic | 50.0% | |
| GGATGTTCATCTCCCTCTGA+TGG | + | chr5.3:41120798-41120817 | MS.gene053953:intron | 50.0% | |
| TGGCCAATTACAACTGCTGC+CGG | + | chr5.3:41120457-41120476 | MS.gene053953:intron | 50.0% | |
| ! | AGCACATGGGAGGCTATTTC+TGG | - | chr5.3:41120128-41120147 | None:intergenic | 50.0% |
| ! | GCAGGAACACTTGTTGGTTG+AGG | - | chr5.3:41121119-41121138 | None:intergenic | 50.0% |
| ! | TTTTCGTAATGGCACCCCTG+TGG | + | chr5.3:41121225-41121244 | MS.gene053953:intron | 50.0% |
| ! | TTTTTGCAATGGCACCCACG+TGG | + | chr5.3:41121154-41121173 | MS.gene053953:intron | 50.0% |
| !! | ACATGGGAGGCTATTTCTGG+TGG | - | chr5.3:41120125-41120144 | None:intergenic | 50.0% |
| !! | AGTGGAGTTCAGGGCATTGA+AGG | + | chr5.3:41122529-41122548 | MS.gene053953:CDS | 50.0% |
| !! | AGTTGATTCGCAGCCAGGTA+TGG | + | chr5.3:41120043-41120062 | MS.gene053953:intron | 50.0% |
| !! | GCCGGCTCTTTCTTTTCAAG+AGG | + | chr5.3:41120475-41120494 | MS.gene053953:intron | 50.0% |
| !! | GGTGGTACTATTGGTGATGG+AGG | - | chr5.3:41120107-41120126 | None:intergenic | 50.0% |
| AGCACCTTGAAGCACATGGG+AGG | - | chr5.3:41120138-41120157 | None:intergenic | 55.0% | |
| CGCACAAGATGGAGCTTGCA+TGG | + | chr5.3:41122556-41122575 | MS.gene053953:CDS | 55.0% | |
| GAGCCGGCAGCAGTTGTAAT+TGG | - | chr5.3:41120463-41120482 | None:intergenic | 55.0% | |
| GAGGAGGCAGGAACACTTGT+TGG | - | chr5.3:41121125-41121144 | None:intergenic | 55.0% | |
| GGAGAGGTCTACTCAGCTTG+AGG | + | chr5.3:41121878-41121897 | MS.gene053953:CDS | 55.0% | |
| GGGACAAAGGGTCACTGTGT+TGG | - | chr5.3:41120720-41120739 | None:intergenic | 55.0% | |
| TGATTCGCAGCCAGGTATGG+AGG | + | chr5.3:41120046-41120065 | MS.gene053953:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 41119937 | 41122600 | 41119937 | ID=MS.gene053953 |
| chr5.3 | mRNA | 41119937 | 41122600 | 41119937 | ID=MS.gene053953.t1;Parent=MS.gene053953 |
| chr5.3 | exon | 41119937 | 41119943 | 41119937 | ID=MS.gene053953.t1.exon1;Parent=MS.gene053953.t1 |
| chr5.3 | CDS | 41119937 | 41119943 | 41119937 | ID=cds.MS.gene053953.t1;Parent=MS.gene053953.t1 |
| chr5.3 | exon | 41120045 | 41120194 | 41120045 | ID=MS.gene053953.t1.exon2;Parent=MS.gene053953.t1 |
| chr5.3 | CDS | 41120045 | 41120194 | 41120045 | ID=cds.MS.gene053953.t1;Parent=MS.gene053953.t1 |
| chr5.3 | exon | 41121502 | 41121575 | 41121502 | ID=MS.gene053953.t1.exon3;Parent=MS.gene053953.t1 |
| chr5.3 | CDS | 41121502 | 41121575 | 41121502 | ID=cds.MS.gene053953.t1;Parent=MS.gene053953.t1 |
| chr5.3 | exon | 41121804 | 41121922 | 41121804 | ID=MS.gene053953.t1.exon4;Parent=MS.gene053953.t1 |
| chr5.3 | CDS | 41121804 | 41121922 | 41121804 | ID=cds.MS.gene053953.t1;Parent=MS.gene053953.t1 |
| chr5.3 | exon | 41122513 | 41122600 | 41122513 | ID=MS.gene053953.t1.exon5;Parent=MS.gene053953.t1 |
| chr5.3 | CDS | 41122513 | 41122600 | 41122513 | ID=cds.MS.gene053953.t1;Parent=MS.gene053953.t1 |
| Gene Sequence |
| Protein sequence |
