Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene051924.t1 | XP_013450314.1 | 100 | 44 | 0 | 0 | 1 | 44 | 1 | 44 | 4.90E-16 | 92.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene051924.t1 | O22518 | 97.7 | 43 | 1 | 0 | 2 | 44 | 10 | 52 | 1.7e-17 | 89.0 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene051924.t1 | G8A187 | 100.0 | 44 | 0 | 0 | 1 | 44 | 1 | 44 | 3.5e-16 | 92.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049452 | MS.gene051924 | -0.80636 | 8.54E-50 | -1.69E-46 |
MS.gene050105 | MS.gene051924 | -0.821656 | 3.60E-53 | -1.69E-46 |
MS.gene050680 | MS.gene051924 | -0.802148 | 6.44E-49 | -1.69E-46 |
MS.gene050750 | MS.gene051924 | -0.815234 | 1.03E-51 | -1.69E-46 |
MS.gene050826 | MS.gene051924 | -0.836861 | 7.30E-57 | -1.69E-46 |
MS.gene050953 | MS.gene051924 | -0.820469 | 6.75E-53 | -1.69E-46 |
MS.gene051122 | MS.gene051924 | -0.822442 | 2.36E-53 | -1.69E-46 |
MS.gene051368 | MS.gene051924 | -0.800081 | 1.70E-48 | -1.69E-46 |
MS.gene051924 | MS.gene051926 | 0.92891 | 1.48E-92 | -1.69E-46 |
MS.gene051924 | MS.gene052190 | -0.808491 | 3.02E-50 | -1.69E-46 |
MS.gene051924 | MS.gene052333 | -0.830312 | 3.15E-55 | -1.69E-46 |
MS.gene051924 | MS.gene052674 | -0.852395 | 4.75E-61 | -1.69E-46 |
MS.gene051924 | MS.gene052675 | -0.848981 | 4.33E-60 | -1.69E-46 |
MS.gene051924 | MS.gene052677 | -0.852242 | 5.25E-61 | -1.69E-46 |
MS.gene051924 | MS.gene052965 | 0.827951 | 1.18E-54 | -1.69E-46 |
MS.gene051924 | MS.gene053166 | -0.821002 | 5.09E-53 | -1.69E-46 |
MS.gene051924 | MS.gene05415 | -0.821882 | 3.19E-53 | -1.69E-46 |
MS.gene051924 | MS.gene054291 | 0.830583 | 2.71E-55 | -1.69E-46 |
MS.gene051924 | MS.gene054405 | -0.819053 | 1.42E-52 | -1.69E-46 |
MS.gene051924 | MS.gene054468 | -0.814497 | 1.50E-51 | -1.69E-46 |
MS.gene051924 | MS.gene054559 | -0.812967 | 3.25E-51 | -1.69E-46 |
MS.gene051924 | MS.gene055453 | 0.828627 | 8.09E-55 | -1.69E-46 |
MS.gene051924 | MS.gene055455 | 0.824022 | 1.01E-53 | -1.69E-46 |
MS.gene051924 | MS.gene055701 | -0.844664 | 6.57E-59 | -1.69E-46 |
MS.gene051924 | MS.gene055818 | -0.802355 | 5.84E-49 | -1.69E-46 |
MS.gene051924 | MS.gene056506 | -0.809916 | 1.49E-50 | -1.69E-46 |
MS.gene051924 | MS.gene056779 | -0.82618 | 3.13E-54 | -1.69E-46 |
MS.gene051924 | MS.gene057026 | -0.808651 | 2.79E-50 | -1.69E-46 |
MS.gene051924 | MS.gene057156 | 0.839156 | 1.88E-57 | -1.69E-46 |
MS.gene051924 | MS.gene058223 | 0.818894 | 1.54E-52 | -1.69E-46 |
MS.gene051924 | MS.gene059161 | -0.809851 | 1.54E-50 | -1.69E-46 |
MS.gene051924 | MS.gene059952 | -0.805488 | 1.30E-49 | -1.69E-46 |
MS.gene051924 | MS.gene060011 | -0.800401 | 1.47E-48 | -1.69E-46 |
MS.gene051924 | MS.gene060322 | -0.838672 | 2.50E-57 | -1.69E-46 |
MS.gene051924 | MS.gene06052 | -0.807002 | 6.25E-50 | -1.69E-46 |
MS.gene051924 | MS.gene065461 | 0.839577 | 1.46E-57 | -1.69E-46 |
MS.gene051924 | MS.gene066745 | -0.831122 | 2.00E-55 | -1.69E-46 |
MS.gene051924 | MS.gene066830 | 0.824334 | 8.54E-54 | -1.69E-46 |
MS.gene051924 | MS.gene06698 | -0.837141 | 6.19E-57 | -1.69E-46 |
MS.gene051924 | MS.gene067789 | 0.802969 | 4.36E-49 | -1.69E-46 |
MS.gene051924 | MS.gene067812 | -0.806745 | 7.09E-50 | -1.69E-46 |
MS.gene051924 | MS.gene068014 | 0.831012 | 2.12E-55 | -1.69E-46 |
MS.gene051924 | MS.gene068514 | -0.837824 | 4.14E-57 | -1.69E-46 |
MS.gene051924 | MS.gene069868 | 0.812992 | 3.21E-51 | -1.69E-46 |
MS.gene051924 | MS.gene070685 | -0.822402 | 2.41E-53 | -1.69E-46 |
MS.gene051924 | MS.gene070713 | 0.80093 | 1.14E-48 | -1.69E-46 |
MS.gene051924 | MS.gene071152 | 0.813093 | 3.05E-51 | -1.69E-46 |
MS.gene051924 | MS.gene071667 | 0.817822 | 2.70E-52 | -1.69E-46 |
MS.gene051924 | MS.gene071669 | 0.8092 | 2.13E-50 | -1.69E-46 |
MS.gene051924 | MS.gene071670 | 0.821706 | 3.50E-53 | -1.69E-46 |
MS.gene051924 | MS.gene072375 | 0.885665 | 6.68E-72 | -1.69E-46 |
MS.gene051924 | MS.gene072397 | 0.875391 | 3.20E-68 | -1.69E-46 |
MS.gene051924 | MS.gene072677 | -0.805127 | 1.55E-49 | -1.69E-46 |
MS.gene051924 | MS.gene072942 | -0.815723 | 7.99E-52 | -1.69E-46 |
MS.gene051924 | MS.gene072994 | -0.823811 | 1.13E-53 | -1.69E-46 |
MS.gene051924 | MS.gene073008 | -0.80916 | 2.17E-50 | -1.69E-46 |
MS.gene051924 | MS.gene073015 | 0.819575 | 1.08E-52 | -1.69E-46 |
MS.gene051924 | MS.gene073016 | 0.830701 | 2.53E-55 | -1.69E-46 |
MS.gene051924 | MS.gene073460 | -0.825774 | 3.90E-54 | -1.69E-46 |
MS.gene051924 | MS.gene074184 | 0.895247 | 1.15E-75 | -1.69E-46 |
MS.gene051924 | MS.gene08806 | -0.827794 | 1.28E-54 | -1.69E-46 |
MS.gene051924 | MS.gene08961 | -0.814163 | 1.77E-51 | -1.69E-46 |
MS.gene051924 | MS.gene09283 | -0.823467 | 1.36E-53 | -1.69E-46 |
MS.gene051924 | MS.gene21676 | -0.802868 | 4.57E-49 | -1.69E-46 |
MS.gene051924 | MS.gene22731 | -0.803071 | 4.15E-49 | -1.69E-46 |
MS.gene051924 | MS.gene23021 | 0.838724 | 2.43E-57 | -1.69E-46 |
MS.gene051924 | MS.gene23103 | -0.838714 | 2.44E-57 | -1.69E-46 |
MS.gene051924 | MS.gene24425 | 0.811502 | 6.78E-51 | -1.69E-46 |
MS.gene051924 | MS.gene24642 | -0.844958 | 5.47E-59 | -1.69E-46 |
MS.gene051924 | MS.gene24651 | -0.825068 | 5.73E-54 | -1.69E-46 |
MS.gene051924 | MS.gene25121 | -0.811264 | 7.64E-51 | -1.69E-46 |
MS.gene051924 | MS.gene25151 | -0.840184 | 1.01E-57 | -1.69E-46 |
MS.gene051924 | MS.gene25241 | 0.910128 | 2.65E-82 | -1.69E-46 |
MS.gene051924 | MS.gene25648 | 0.930334 | 1.90E-93 | -1.69E-46 |
MS.gene051924 | MS.gene28027 | -0.809804 | 1.58E-50 | -1.69E-46 |
MS.gene051924 | MS.gene28623 | -0.800531 | 1.38E-48 | -1.69E-46 |
MS.gene051924 | MS.gene28862 | -0.809626 | 1.72E-50 | -1.69E-46 |
MS.gene051924 | MS.gene29000 | -0.829012 | 6.53E-55 | -1.69E-46 |
MS.gene051924 | MS.gene29086 | -0.828761 | 7.51E-55 | -1.69E-46 |
MS.gene051924 | MS.gene30368 | -0.824951 | 6.11E-54 | -1.69E-46 |
MS.gene051924 | MS.gene30397 | -0.848232 | 6.99E-60 | -1.69E-46 |
MS.gene051924 | MS.gene31855 | -0.803537 | 3.33E-49 | -1.69E-46 |
MS.gene051924 | MS.gene31876 | -0.837934 | 3.88E-57 | -1.69E-46 |
MS.gene051924 | MS.gene32231 | -0.822988 | 1.76E-53 | -1.69E-46 |
MS.gene051924 | MS.gene33127 | 0.839574 | 1.46E-57 | -1.69E-46 |
MS.gene051924 | MS.gene33651 | -0.805188 | 1.51E-49 | -1.69E-46 |
MS.gene051924 | MS.gene34326 | -0.83327 | 5.87E-56 | -1.69E-46 |
MS.gene051924 | MS.gene34430 | 0.82477 | 6.74E-54 | -1.69E-46 |
MS.gene051924 | MS.gene36154 | -0.800211 | 1.60E-48 | -1.69E-46 |
MS.gene051924 | MS.gene37086 | -0.841586 | 4.35E-58 | -1.69E-46 |
MS.gene051924 | MS.gene37282 | 0.803453 | 3.46E-49 | -1.69E-46 |
MS.gene051924 | MS.gene37722 | 0.833657 | 4.70E-56 | -1.69E-46 |
MS.gene051924 | MS.gene38269 | 0.817792 | 2.74E-52 | -1.69E-46 |
MS.gene051924 | MS.gene39280 | 0.804864 | 1.76E-49 | -1.69E-46 |
MS.gene051924 | MS.gene39376 | 0.855043 | 8.22E-62 | -1.69E-46 |
MS.gene051924 | MS.gene39695 | 0.852986 | 3.22E-61 | -1.69E-46 |
MS.gene051924 | MS.gene39916 | -0.812832 | 3.48E-51 | -1.69E-46 |
MS.gene051924 | MS.gene40380 | 0.802904 | 4.50E-49 | -1.69E-46 |
MS.gene051924 | MS.gene40381 | 0.816909 | 4.34E-52 | -1.69E-46 |
MS.gene051924 | MS.gene40462 | -0.84417 | 8.92E-59 | -1.69E-46 |
MS.gene051924 | MS.gene40880 | -0.806754 | 7.05E-50 | -1.69E-46 |
MS.gene051924 | MS.gene40882 | -0.81135 | 7.32E-51 | -1.69E-46 |
MS.gene051924 | MS.gene41729 | -0.809759 | 1.61E-50 | -1.69E-46 |
MS.gene051924 | MS.gene43906 | -0.806686 | 7.29E-50 | -1.69E-46 |
MS.gene051924 | MS.gene44131 | -0.800059 | 1.72E-48 | -1.69E-46 |
MS.gene051924 | MS.gene44407 | 0.818335 | 2.07E-52 | -1.69E-46 |
MS.gene051924 | MS.gene45663 | 0.807463 | 4.99E-50 | -1.69E-46 |
MS.gene051924 | MS.gene45938 | 0.81056 | 1.08E-50 | -1.69E-46 |
MS.gene051924 | MS.gene49354 | -0.824245 | 8.96E-54 | -1.69E-46 |
MS.gene051924 | MS.gene50571 | -0.806459 | 8.14E-50 | -1.69E-46 |
MS.gene051924 | MS.gene50745 | -0.837915 | 3.92E-57 | -1.69E-46 |
MS.gene051924 | MS.gene51549 | 0.812907 | 3.35E-51 | -1.69E-46 |
MS.gene051924 | MS.gene51650 | -0.811911 | 5.52E-51 | -1.69E-46 |
MS.gene051924 | MS.gene52448 | -0.803304 | 3.72E-49 | -1.69E-46 |
MS.gene051924 | MS.gene54512 | -0.808841 | 2.54E-50 | -1.69E-46 |
MS.gene051924 | MS.gene54540 | -0.807551 | 4.78E-50 | -1.69E-46 |
MS.gene051924 | MS.gene54858 | -0.830982 | 2.16E-55 | -1.69E-46 |
MS.gene051924 | MS.gene55357 | -0.811348 | 7.32E-51 | -1.69E-46 |
MS.gene051924 | MS.gene55480 | 0.813932 | 1.99E-51 | -1.69E-46 |
MS.gene051924 | MS.gene55778 | -0.814961 | 1.18E-51 | -1.69E-46 |
MS.gene051924 | MS.gene56290 | -0.811507 | 6.76E-51 | -1.69E-46 |
MS.gene051924 | MS.gene56431 | -0.83059 | 2.70E-55 | -1.69E-46 |
MS.gene051924 | MS.gene56441 | -0.820964 | 5.19E-53 | -1.69E-46 |
MS.gene051924 | MS.gene57336 | -0.833679 | 4.64E-56 | -1.69E-46 |
MS.gene051924 | MS.gene57469 | -0.825229 | 5.25E-54 | -1.69E-46 |
MS.gene051924 | MS.gene58686 | -0.806343 | 8.61E-50 | -1.69E-46 |
MS.gene051924 | MS.gene59607 | -0.804482 | 2.11E-49 | -1.69E-46 |
MS.gene051924 | MS.gene60680 | -0.80033 | 1.52E-48 | -1.69E-46 |
MS.gene051924 | MS.gene63984 | -0.862545 | 4.70E-64 | -1.69E-46 |
MS.gene051924 | MS.gene65279 | 0.822859 | 1.89E-53 | -1.69E-46 |
MS.gene051924 | MS.gene66049 | -0.826106 | 3.26E-54 | -1.69E-46 |
MS.gene051924 | MS.gene68333 | -0.85033 | 1.82E-60 | -1.69E-46 |
MS.gene051924 | MS.gene70534 | -0.807079 | 6.02E-50 | -1.69E-46 |
MS.gene051924 | MS.gene73820 | -0.82131 | 4.32E-53 | -1.69E-46 |
MS.gene051924 | MS.gene74006 | -0.800428 | 1.45E-48 | -1.69E-46 |
MS.gene051924 | MS.gene75019 | 0.829317 | 5.51E-55 | -1.69E-46 |
MS.gene051924 | MS.gene75598 | 0.82855 | 8.45E-55 | -1.69E-46 |
MS.gene051924 | MS.gene75626 | -0.809979 | 1.45E-50 | -1.69E-46 |
MS.gene051924 | MS.gene76533 | 0.808817 | 2.57E-50 | -1.69E-46 |
MS.gene051924 | MS.gene76750 | -0.813373 | 2.64E-51 | -1.69E-46 |
MS.gene051924 | MS.gene76949 | -0.822696 | 2.06E-53 | -1.69E-46 |
MS.gene051924 | MS.gene77015 | -0.806021 | 1.01E-49 | -1.69E-46 |
MS.gene051924 | MS.gene77208 | -0.817388 | 3.38E-52 | -1.69E-46 |
MS.gene051924 | MS.gene77579 | -0.820862 | 5.48E-53 | -1.69E-46 |
MS.gene051924 | MS.gene78230 | -0.821898 | 3.16E-53 | -1.69E-46 |
MS.gene051924 | MS.gene80715 | -0.806758 | 7.04E-50 | -1.69E-46 |
MS.gene051924 | MS.gene80770 | -0.825083 | 5.69E-54 | -1.69E-46 |
MS.gene051924 | MS.gene81295 | 0.82737 | 1.62E-54 | -1.69E-46 |
MS.gene051924 | MS.gene82259 | -0.810903 | 9.15E-51 | -1.69E-46 |
MS.gene051924 | MS.gene82325 | -0.860798 | 1.61E-63 | -1.69E-46 |
MS.gene051924 | MS.gene83538 | -0.805853 | 1.09E-49 | -1.69E-46 |
MS.gene051924 | MS.gene83812 | -0.810221 | 1.28E-50 | -1.69E-46 |
MS.gene051924 | MS.gene85149 | 0.822247 | 2.62E-53 | -1.69E-46 |
MS.gene051924 | MS.gene87621 | 0.800852 | 1.19E-48 | -1.69E-46 |
MS.gene051924 | MS.gene90231 | 0.809158 | 2.17E-50 | -1.69E-46 |
MS.gene051924 | MS.gene90956 | -0.801586 | 8.40E-49 | -1.69E-46 |
MS.gene051924 | MS.gene93041 | -0.804031 | 2.63E-49 | -1.69E-46 |
MS.gene051924 | MS.gene93172 | -0.804939 | 1.70E-49 | -1.69E-46 |
MS.gene051924 | MS.gene93764 | -0.803856 | 2.85E-49 | -1.69E-46 |
MS.gene051924 | MS.gene97477 | 0.820506 | 6.62E-53 | -1.69E-46 |
MS.gene051924 | MS.gene97479 | 0.806632 | 7.49E-50 | -1.69E-46 |
MS.gene051924 | MS.gene98264 | 0.80987 | 1.53E-50 | -1.69E-46 |
MS.gene051924 | MS.gene98326 | -0.800021 | 1.75E-48 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene051924.t1 | MTR_7g107400 | 100.000 | 44 | 0 | 0 | 1 | 44 | 1 | 44 | 3.42e-26 | 96.3 |
MS.gene051924.t1 | MTR_3g095810 | 97.500 | 40 | 1 | 0 | 5 | 44 | 9 | 48 | 2.53e-22 | 85.9 |
MS.gene051924.t1 | MTR_3g095810 | 97.500 | 40 | 1 | 0 | 5 | 44 | 9 | 48 | 2.54e-22 | 85.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene051924.t1 | AT3G04770 | 80.952 | 42 | 8 | 0 | 3 | 44 | 9 | 50 | 2.05e-20 | 80.9 |
MS.gene051924.t1 | AT3G04770 | 79.070 | 43 | 9 | 0 | 2 | 44 | 8 | 50 | 5.62e-20 | 80.1 |
MS.gene051924.t1 | AT1G72370 | 76.744 | 43 | 10 | 0 | 2 | 44 | 7 | 49 | 4.52e-19 | 77.4 |
MS.gene051924.t1 | AT1G72370 | 76.744 | 43 | 10 | 0 | 2 | 44 | 7 | 49 | 5.01e-19 | 77.4 |
Find 13 sgRNAs with CRISPR-Local
Find 12 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATAATTTAGGGTTTGGAAAA+TGG | 0.189223 | 7.1:+5969419 | None:intergenic |
AAATTGGATAATTTAGGGTT+TGG | 0.349997 | 7.1:+5969412 | None:intergenic |
CATCGGCGGCAAGCATCATC+TGG | 0.408335 | 7.1:+5969516 | None:intergenic |
GGCAAGCATCATCTGGATAT+CGG | 0.457963 | 7.1:+5969523 | None:intergenic |
ATCTTCAAGCGCCGTAACGA+TGG | 0.529765 | 7.1:-5969449 | MS.gene051924:CDS |
ATGGAATGTTACCATCGTTA+CGG | 0.545997 | 7.1:+5969438 | None:intergenic |
TTTAGTACCGAGATGGACAT+CGG | 0.561895 | 7.1:+5969499 | None:intergenic |
AAGTTGACGAGGGGCAGCCA+TGG | 0.573667 | 7.1:+5969559 | None:intergenic |
CTTTCTGAGAAAGTTGACGA+GGG | 0.588586 | 7.1:+5969549 | None:intergenic |
CTTGCCGCCGATGTCCATCT+CGG | 0.588724 | 7.1:-5969506 | MS.gene051924:CDS |
TCTTTCTGAGAAAGTTGACG+AGG | 0.624055 | 7.1:+5969548 | None:intergenic |
TTTCTGAGAAAGTTGACGAG+GGG | 0.682900 | 7.1:+5969550 | None:intergenic |
AGTACCGAGATGGACATCGG+CGG | 0.738432 | 7.1:+5969502 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
ATGGAATGTTACCATCGTTA+CGG | + | chr7.1:5969546-5969565 | None:intergenic | 35.0% | |
TAAAAACTGCGACTTTCAGA+TGG | - | chr7.1:5969501-5969520 | MS.gene051924:CDS | 35.0% | |
! | CTTTCTGAGAAAGTTGACGA+GGG | + | chr7.1:5969435-5969454 | None:intergenic | 40.0% |
! | TCTTTCTGAGAAAGTTGACG+AGG | + | chr7.1:5969436-5969455 | None:intergenic | 40.0% |
! | TTTAGTACCGAGATGGACAT+CGG | + | chr7.1:5969485-5969504 | None:intergenic | 40.0% |
! | TTTCTGAGAAAGTTGACGAG+GGG | + | chr7.1:5969434-5969453 | None:intergenic | 40.0% |
GGCAAGCATCATCTGGATAT+CGG | + | chr7.1:5969461-5969480 | None:intergenic | 45.0% | |
!!! | CGCAGTTTTTAGTACCGAGA+TGG | + | chr7.1:5969492-5969511 | None:intergenic | 45.0% |
! | ATCTTCAAGCGCCGTAACGA+TGG | - | chr7.1:5969532-5969551 | MS.gene051924:CDS | 50.0% |
! | AGTACCGAGATGGACATCGG+CGG | + | chr7.1:5969482-5969501 | None:intergenic | 55.0% |
CATCGGCGGCAAGCATCATC+TGG | + | chr7.1:5969468-5969487 | None:intergenic | 60.0% | |
CTTGCCGCCGATGTCCATCT+CGG | - | chr7.1:5969475-5969494 | MS.gene051924:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7.1 | gene | 5969424 | 5969579 | 5969424 | ID=MS.gene051924 |
chr7.1 | mRNA | 5969424 | 5969579 | 5969424 | ID=MS.gene051924.t1;Parent=MS.gene051924 |
chr7.1 | exon | 5969424 | 5969579 | 5969424 | ID=MS.gene051924.t1.exon1;Parent=MS.gene051924.t1 |
chr7.1 | CDS | 5969424 | 5969579 | 5969424 | ID=cds.MS.gene051924.t1;Parent=MS.gene051924.t1 |
Gene Sequence |
Protein sequence |