AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene058502


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene058502.t1 MTR_1g014190 68.199 261 29 4 1 210 36 293 2.70e-115 333
MS.gene058502.t1 MTR_1g014190 68.199 261 29 4 1 210 74 331 2.59e-114 332
MS.gene058502.t1 MTR_3g105880 53.307 257 72 2 1 209 36 292 5.03e-88 263
MS.gene058502.t1 MTR_3g105880 53.307 257 72 2 1 209 36 292 1.24e-87 261
MS.gene058502.t1 MTR_4g007440 49.219 256 82 3 1 208 36 291 7.90e-78 238
MS.gene058502.t1 MTR_3g451410 56.977 86 25 1 5 78 51 136 1.53e-25 98.2
MS.gene058502.t1 MTR_4g123080 46.154 104 53 1 105 208 193 293 1.00e-23 97.1
MS.gene058502.t1 MTR_4g123080 46.154 104 53 1 105 208 211 311 1.05e-23 97.4
MS.gene058502.t1 MTR_2g033000 43.269 104 56 1 105 208 198 298 8.31e-23 94.7
MS.gene058502.t1 MTR_5g024340 29.245 212 141 4 1 209 108 313 1.56e-22 94.0
MS.gene058502.t1 MTR_3g107880 30.876 217 126 6 4 208 50 254 6.72e-21 89.0
MS.gene058502.t1 MTR_3g107880 30.876 217 126 6 4 208 108 312 1.51e-20 88.6
MS.gene058502.t1 MTR_3g107880 30.876 217 126 6 4 208 107 311 1.54e-20 88.6
MS.gene058502.t1 MTR_4g123080 46.739 92 46 1 117 208 110 198 1.65e-20 87.0
MS.gene058502.t1 MTR_1g086350 39.604 101 58 1 108 208 117 214 9.51e-19 82.4
MS.gene058502.t1 MTR_1g086350 39.604 101 58 1 108 208 219 316 3.85e-18 82.0
MS.gene058502.t1 MTR_1g086350 39.604 101 58 1 108 208 203 300 3.87e-18 81.6
MS.gene058502.t1 MTR_4g116420 39.796 98 59 0 111 208 220 317 4.15e-18 81.6
MS.gene058502.t1 MTR_6g081850 41.905 105 51 3 106 209 189 284 3.74e-17 78.6
MS.gene058502.t1 MTR_3g464700 29.386 228 109 10 1 204 100 299 2.77e-15 73.6
MS.gene058502.t1 MTR_1g050520 28.251 223 131 8 1 205 400 611 6.07e-15 73.2
MS.gene058502.t1 MTR_3g491830 35.115 131 52 2 111 208 186 316 7.78e-14 69.7
MS.gene058502.t1 MTR_5g009370 38.095 105 53 2 107 208 187 282 1.06e-13 68.9
MS.gene058502.t1 MTR_5g071550 38.462 104 51 3 107 206 243 337 3.63e-13 67.8
MS.gene058502.t1 MTR_3g105730 38.614 101 50 4 108 205 157 248 1.14e-12 65.9
MS.gene058502.t1 MTR_1g014640 38.614 101 50 4 108 205 200 291 1.24e-12 65.9
MS.gene058502.t1 MTR_1g013400 38.614 101 50 4 108 205 200 291 1.24e-12 65.9
MS.gene058502.t1 MTR_3g105730 38.614 101 50 4 108 205 135 226 1.46e-12 65.5
MS.gene058502.t1 MTR_4g125810 30.822 146 77 6 80 210 316 452 5.50e-12 64.3
MS.gene058502.t1 MTR_4g094208 30.476 105 57 3 107 206 152 245 2.43e-11 62.0
MS.gene058502.t1 MTR_1g115570 31.280 211 92 11 17 205 126 305 4.72e-11 61.6
MS.gene058502.t1 MTR_5g080680 35.780 109 57 4 89 193 218 317 7.38e-11 60.8
MS.gene058502.t1 MTR_1g015110 33.010 103 57 3 111 210 402 495 7.94e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene058502.t1 AT2G25070 51.172 256 77 3 1 208 36 291 2.14e-83 251
MS.gene058502.t1 AT2G25070 51.172 256 77 3 1 208 36 291 2.14e-83 251
MS.gene058502.t1 AT4G31860 50.579 259 74 4 1 208 36 291 4.12e-83 249
MS.gene058502.t1 AT4G31860 50.579 259 74 4 1 208 36 291 9.53e-83 250
MS.gene058502.t1 AT4G31860 49.794 243 68 4 1 192 36 275 2.22e-73 223
MS.gene058502.t1 AT3G51470 31.500 200 128 5 13 209 58 251 1.94e-22 93.2
MS.gene058502.t1 AT3G51470 31.500 200 128 5 13 209 102 295 3.58e-22 92.8
MS.gene058502.t1 AT2G33700 29.148 223 139 5 1 210 97 313 5.12e-21 90.1
MS.gene058502.t1 AT2G25620 34.286 140 89 2 72 208 184 323 6.28e-19 84.3
MS.gene058502.t1 AT2G25620 34.286 140 89 2 72 208 184 323 6.28e-19 84.3
MS.gene058502.t1 AT1G48040 42.308 104 58 2 105 208 215 316 6.93e-18 81.3
MS.gene058502.t1 AT3G62260 40.196 102 57 2 108 208 128 226 1.99e-17 79.0
MS.gene058502.t1 AT3G62260 40.196 102 57 2 108 208 217 315 3.71e-17 79.3
MS.gene058502.t1 AT3G62260 40.196 102 57 2 108 208 218 316 3.76e-17 79.3
MS.gene058502.t1 AT3G17250 36.634 101 64 0 108 208 260 360 9.48e-16 75.5
MS.gene058502.t1 AT2G40180 29.565 230 114 9 1 205 141 347 4.49e-15 73.2
MS.gene058502.t1 AT5G24940 41.176 102 48 4 108 206 156 248 8.14e-15 72.8
MS.gene058502.t1 AT1G07160 29.694 229 111 8 1 205 135 337 1.60e-14 71.6
MS.gene058502.t1 AT1G67820 31.081 222 108 10 1 201 97 294 2.32e-14 71.2
MS.gene058502.t1 AT1G67820 30.088 226 105 12 1 201 133 330 3.50e-14 70.9
MS.gene058502.t1 AT5G10740 41.176 102 48 4 108 206 156 248 6.40e-14 69.7
MS.gene058502.t1 AT5G10740 41.176 102 48 4 108 206 156 248 6.40e-14 69.7
MS.gene058502.t1 AT1G18030 35.577 104 58 2 106 208 219 314 2.04e-13 68.2
MS.gene058502.t1 AT1G07430 28.692 237 129 9 1 208 133 358 3.42e-13 67.8
MS.gene058502.t1 AT4G31750 38.614 101 50 4 108 205 156 247 1.68e-12 65.5
MS.gene058502.t1 AT4G31750 38.614 101 50 4 108 205 156 247 1.91e-12 65.5
MS.gene058502.t1 AT4G31750 38.614 101 50 4 108 205 156 247 1.91e-12 65.5
MS.gene058502.t1 AT4G27800 35.849 106 49 2 122 208 210 315 2.66e-12 65.1
MS.gene058502.t1 AT4G27800 35.849 106 49 2 122 208 210 315 2.77e-12 65.1
MS.gene058502.t1 AT4G27800 35.849 106 49 2 122 208 210 315 2.77e-12 65.1
MS.gene058502.t1 AT2G30020 35.514 107 56 2 107 209 261 358 3.67e-12 64.7
MS.gene058502.t1 AT1G17550 35.294 102 54 3 111 209 360 452 4.38e-12 64.7
MS.gene058502.t1 AT1G17550 35.294 102 54 3 111 209 360 452 4.38e-12 64.7
MS.gene058502.t1 AT5G51760 35.294 119 64 4 91 205 214 323 5.17e-12 64.3
MS.gene058502.t1 AT5G51760 35.294 119 64 4 91 205 244 353 5.71e-12 64.3
MS.gene058502.t1 AT1G18030 37.079 89 47 2 106 193 219 299 1.18e-11 63.2
MS.gene058502.t1 AT4G28400 39.423 104 47 4 107 205 136 228 1.27e-11 62.4
MS.gene058502.t1 AT4G28400 39.048 105 48 4 107 206 158 251 1.82e-11 62.4
MS.gene058502.t1 AT5G57050 26.786 224 115 8 14 210 117 318 4.08e-11 61.6
MS.gene058502.t1 AT5G57050 26.786 224 115 8 14 210 157 358 4.13e-11 62.0
MS.gene058502.t1 AT1G72770 33.019 106 59 3 108 210 357 453 5.06e-11 61.6
MS.gene058502.t1 AT1G72770 33.019 106 59 3 108 210 357 453 5.06e-11 61.6
MS.gene058502.t1 AT1G72770 33.019 106 59 3 108 210 357 453 5.06e-11 61.6
MS.gene058502.t1 AT5G53140 38.835 103 51 4 108 207 224 317 5.84e-11 61.2
MS.gene058502.t1 AT5G53140 38.835 103 51 4 108 207 224 317 5.84e-11 61.2

Find 46 sgRNAs with CRISPR-Local

Find 135 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTCCTTATTATCATTGCTTC+TGG 0.154103 1.2:+8114521 None:intergenic
CTACCAATTGTTGGCTTGAT+AGG 0.213993 1.2:+8113122 None:intergenic
GTCTTAGGTGATAAGGTAAA+AGG 0.236931 1.2:-8114579 MS.gene058502:CDS
ATTCATGCAGGACGAATTAA+TGG 0.284463 1.2:-8113883 MS.gene058502:CDS
TTAAATCTTGCAAGAGCTAT+AGG 0.342994 1.2:-8113856 MS.gene058502:intron
TCCCAGAAGCAATGATAATA+AGG 0.343732 1.2:-8114523 MS.gene058502:CDS
TCCTTATTATCATTGCTTCT+GGG 0.356241 1.2:+8114522 None:intergenic
TCCTTCTCAATCACAAGCTC+AGG 0.385685 1.2:+8113931 None:intergenic
GACTTTGATGGACCAACTTC+AGG 0.394479 1.2:-8114349 MS.gene058502:CDS
TGGAGGGAATTAGCAGTCTT+AGG 0.418225 1.2:-8114594 MS.gene058502:CDS
AAACTTACAATGTTTATGTC+TGG 0.418978 1.2:+8113480 None:intergenic
GTACAAAATCTACCAATTGT+TGG 0.434248 1.2:+8113113 None:intergenic
TACAATGTTTATGTCTGGAT+TGG 0.435988 1.2:+8113485 None:intergenic
GGGCCTCATTCAGACTTTGA+TGG 0.437338 1.2:-8114361 MS.gene058502:CDS
GATAAGGTAAAAGGGTTCAA+TGG 0.446026 1.2:-8114570 MS.gene058502:CDS
TAAGGACCAAAGTGATGATT+GGG 0.447461 1.2:-8114505 MS.gene058502:CDS
ATAAGGACCAAAGTGATGAT+TGG 0.454660 1.2:-8114506 MS.gene058502:CDS
AATGTTTATGTCTGGATTGG+CGG 0.464448 1.2:+8113488 None:intergenic
GTGATGATTGGGCTTTGAAA+AGG 0.466673 1.2:-8114494 MS.gene058502:intron
TCAAAGCCCAATCATCACTT+TGG 0.467858 1.2:+8114499 None:intergenic
TTGCCTATCAAGCCAACAAT+TGG 0.471715 1.2:-8113125 MS.gene058502:CDS
TGTACGTCAAGAACTTCTCT+TGG 0.476519 1.2:-8113095 None:intergenic
GGGTTCAATGGAATGATTGA+AGG 0.480510 1.2:-8114558 MS.gene058502:CDS
ATTAGCAGTCTTAGGTGATA+AGG 0.484258 1.2:-8114586 MS.gene058502:CDS
GAATGATTGAAGGATTGATT+CGG 0.488358 1.2:-8114548 MS.gene058502:CDS
TTCATGCAGGACGAATTAAT+GGG 0.491284 1.2:-8113882 MS.gene058502:CDS
TGATAGCTTGTGATGGCATA+TGG 0.507088 1.2:-8113231 MS.gene058502:intron
AAGGAAAGAATCTATAAAGC+TGG 0.515169 1.2:-8113913 MS.gene058502:CDS
TGAGATGATGCGTGGTCAAA+GGG 0.520080 1.2:-8114619 MS.gene058502:CDS
TCTTAGGTGATAAGGTAAAA+GGG 0.520980 1.2:-8114578 MS.gene058502:CDS
TCGGTGTATATGATGGTCCA+TGG 0.521139 1.2:-8115009 MS.gene058502:CDS
CAAGCAGTGCTTCCTGAAGT+TGG 0.536448 1.2:+8114337 None:intergenic
GCGTGGTCAAAGGGGATGGA+GGG 0.539500 1.2:-8114610 MS.gene058502:CDS
TAAACTCATCTTCGTCATGA+AGG 0.558190 1.2:+8113257 None:intergenic
TGATGCGTGGTCAAAGGGGA+TGG 0.565060 1.2:-8114614 MS.gene058502:CDS
TTAATATTCTGCAGGTGACG+TGG 0.584418 1.2:-8113556 MS.gene058502:intron
TGCGTGGTCAAAGGGGATGG+AGG 0.586051 1.2:-8114611 MS.gene058502:CDS
GCATGCGGCGCATCTTGATG+TGG 0.597024 1.2:-8115050 MS.gene058502:CDS
ATGAGATGATGCGTGGTCAA+AGG 0.604481 1.2:-8114620 MS.gene058502:CDS
GGTCCATCAAAGTCTGAATG+AGG 0.607139 1.2:+8114358 None:intergenic
TCCTGAGCTTGTGATTGAGA+AGG 0.613540 1.2:-8113932 MS.gene058502:CDS
GAAAGAATCTATAAAGCTGG+TGG 0.623293 1.2:-8113910 MS.gene058502:CDS
TTTATAGTGATAGCTTGTGA+TGG 0.644189 1.2:-8113238 MS.gene058502:CDS
GTGTATATGATGGTCCATGG+AGG 0.711958 1.2:-8115006 MS.gene058502:intron
GAGATGATGCGTGGTCAAAG+GGG 0.732571 1.2:-8114618 MS.gene058502:CDS
AGAATGGATGAGATGATGCG+TGG 0.759110 1.2:-8114627 MS.gene058502:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GAATATTAAAACATATTAAA+TGG + chr1.2:8115044-8115063 None:intergenic 10.0%
!! TTAAAAAAAAATAACATAAC+AGG + chr1.2:8114456-8114475 None:intergenic 10.0%
!! AAAAGAATTAAACAAATTCT+AGG + chr1.2:8114554-8114573 None:intergenic 15.0%
!! AAATGACATTTATTAAAATG+GGG + chr1.2:8115435-8115454 None:intergenic 15.0%
!! AGAAATGACATTTATTAAAA+TGG + chr1.2:8115437-8115456 None:intergenic 15.0%
!! AGCATACAAAATAAAATAAT+AGG + chr1.2:8114908-8114927 None:intergenic 15.0%
!! GAAATGACATTTATTAAAAT+GGG + chr1.2:8115436-8115455 None:intergenic 15.0%
!!! ATCTTTTTATATTGTAAACA+GGG - chr1.2:8114229-8114248 MS.gene058502:intron 15.0%
!!! TTAGCATTAATTTGTATAAT+TGG - chr1.2:8114410-8114429 MS.gene058502:intron 15.0%
!!! TTTAATTCTTTTTCTTATGT+AGG - chr1.2:8114562-8114581 MS.gene058502:CDS 15.0%
!!! TTTATTTTGTATGCTTTATT+TGG - chr1.2:8114913-8114932 MS.gene058502:intron 15.0%
!! AAAAAGATCAAATTACAGAA+TGG + chr1.2:8114217-8114236 None:intergenic 20.0%
!! ATATTGTCTATTGAGAAATA+GGG + chr1.2:8115178-8115197 None:intergenic 20.0%
!! GTAAAATTTGATTATTTGGA+AGG - chr1.2:8113627-8113646 MS.gene058502:intron 20.0%
!! TAAAATCAAAACTTCACAAT+AGG + chr1.2:8113847-8113866 None:intergenic 20.0%
!!! AAAGTTAAAAGCATAATTGA+CGG + chr1.2:8113446-8113465 None:intergenic 20.0%
!!! AATATGTTACACAAATTTTC+AGG - chr1.2:8113691-8113710 MS.gene058502:intron 20.0%
!!! AATATGTTTTAATATTCTGC+AGG - chr1.2:8115047-8115066 MS.gene058502:CDS 20.0%
!!! AGAGTTTTTGAAAAAATTCA+AGG + chr1.2:8113268-8113287 None:intergenic 20.0%
!!! ATGCTTTTAACTTTGTTTAT+TGG - chr1.2:8113452-8113471 MS.gene058502:intron 20.0%
!!! GATCTTTTTATATTGTAAAC+AGG - chr1.2:8114228-8114247 MS.gene058502:intron 20.0%
!!! TCTTTTTATATTGTAAACAG+GGG - chr1.2:8114230-8114249 MS.gene058502:intron 20.0%
!!! TGTTTTTGGAATTATATCAT+AGG - chr1.2:8115327-8115346 MS.gene058502:intron 20.0%
! AAACTTACAATGTTTATGTC+TGG + chr1.2:8115134-8115153 None:intergenic 25.0%
! AATTTGATTATTTGGAAGGA+TGG - chr1.2:8113631-8113650 MS.gene058502:intron 25.0%
! AGAAAAATTATCACAAGTTC+AGG - chr1.2:8113900-8113919 MS.gene058502:CDS 25.0%
! CATATTGTCTATTGAGAAAT+AGG + chr1.2:8115179-8115198 None:intergenic 25.0%
! CTAAGGTTAAAACTGAATAA+AGG + chr1.2:8114817-8114836 None:intergenic 25.0%
! GGAGGTAAAATTTGATTATT+TGG - chr1.2:8113623-8113642 MS.gene058502:intron 25.0%
! TTTATTAAAATGGGGAATTG+TGG + chr1.2:8115427-8115446 None:intergenic 25.0%
!! AATTCTTTTTCTTACGTTTC+AGG - chr1.2:8115461-8115480 MS.gene058502:intron 25.0%
!! AGTTTTTGTCAAAATCATGA+TGG - chr1.2:8113378-8113397 MS.gene058502:intron 25.0%
!! ATAATCAAATTTTACCTCCA+TGG + chr1.2:8113622-8113641 None:intergenic 25.0%
!! ATTCTTTTTCTTACGTTTCA+GGG - chr1.2:8115462-8115481 MS.gene058502:intron 25.0%
!! CTATTTCTCAATAGACAATA+TGG - chr1.2:8115177-8115196 MS.gene058502:intron 25.0%
!! GTGAGTTATGAACTATATTT+TGG - chr1.2:8113952-8113971 MS.gene058502:CDS 25.0%
!!! AGGAAGTTTCCTTTTATTTT+CGG + chr1.2:8114888-8114907 None:intergenic 25.0%
!!! ATTTTGGTTATTATGCAGAA+TGG - chr1.2:8113968-8113987 MS.gene058502:intron 25.0%
!!! ATTTTGTATGCTTTATTTGG+AGG - chr1.2:8114916-8114935 MS.gene058502:intron 25.0%
!!! CTTTTTTGTTACTTTCATAG+TGG + chr1.2:8113933-8113952 None:intergenic 25.0%
!!! GACATAATTTTTTCTGACTA+TGG - chr1.2:8114615-8114634 MS.gene058502:CDS 25.0%
AAATGCTTAGTCAAGAGTTT+CGG - chr1.2:8115214-8115233 MS.gene058502:intron 30.0%
AAGGAAAGAATCTATAAAGC+TGG - chr1.2:8114698-8114717 MS.gene058502:intron 30.0%
ACTAAGATTATCATAGCTCA+AGG + chr1.2:8114862-8114881 None:intergenic 30.0%
ATTGTAGAAGCAAGTATATG+TGG - chr1.2:8113212-8113231 MS.gene058502:intron 30.0%
CTTAGTGTACCGAAAATAAA+AGG - chr1.2:8114876-8114895 MS.gene058502:intron 30.0%
GAATGATTGAAGGATTGATT+CGG - chr1.2:8114063-8114082 MS.gene058502:intron 30.0%
GTACAAAATCTACCAATTGT+TGG + chr1.2:8115501-8115520 None:intergenic 30.0%
TACAATGTTTATGTCTGGAT+TGG + chr1.2:8115129-8115148 None:intergenic 30.0%
TCCTTATTATCATTGCTTCT+GGG + chr1.2:8114092-8114111 None:intergenic 30.0%
TCTTAGGTGATAAGGTAAAA+GGG - chr1.2:8114033-8114052 MS.gene058502:intron 30.0%
TTAAATCTTGCAAGAGCTAT+AGG - chr1.2:8114755-8114774 MS.gene058502:intron 30.0%
TTGAAGAAGATGCACTTATA+TGG - chr1.2:8115006-8115025 MS.gene058502:intron 30.0%
! AGTGTGATTGAATTGTGTTT+TGG - chr1.2:8113404-8113423 MS.gene058502:intron 30.0%
! GTGTGATTGAATTGTGTTTT+GGG - chr1.2:8113405-8113424 MS.gene058502:intron 30.0%
! TGTGATTGAATTGTGTTTTG+GGG - chr1.2:8113406-8113425 MS.gene058502:intron 30.0%
! TTTATAGTGATAGCTTGTGA+TGG - chr1.2:8115373-8115392 MS.gene058502:intron 30.0%
!!! CTGAATGAGAGTTTTGTTTT+TGG - chr1.2:8115313-8115332 MS.gene058502:intron 30.0%
!!! GTTACACAAATTTTCAGGTA+AGG - chr1.2:8113696-8113715 MS.gene058502:intron 30.0%
!!! TTTTTTCTTTTGCTAGCATG+CGG - chr1.2:8113546-8113565 MS.gene058502:intron 30.0%
AAGCTTCAACAGAATCATGA+TGG + chr1.2:8113350-8113369 None:intergenic 35.0%
AGAATACATAGCTGAGATGT+TGG - chr1.2:8113771-8113790 MS.gene058502:intron 35.0%
ATAAGGACCAAAGTGATGAT+TGG - chr1.2:8114105-8114124 MS.gene058502:intron 35.0%
ATATACACCGAAAAACGAAG+TGG + chr1.2:8113593-8113612 None:intergenic 35.0%
ATTAGCAGTCTTAGGTGATA+AGG - chr1.2:8114025-8114044 MS.gene058502:intron 35.0%
ATTCATGCAGGACGAATTAA+TGG - chr1.2:8114728-8114747 MS.gene058502:intron 35.0%
GAAAGAATCTATAAAGCTGG+TGG - chr1.2:8114701-8114720 MS.gene058502:intron 35.0%
GATAAGGTAAAAGGGTTCAA+TGG - chr1.2:8114041-8114060 MS.gene058502:intron 35.0%
GTACTTGTATGCATGTTGTT+TGG - chr1.2:8114950-8114969 MS.gene058502:intron 35.0%
GTCCTTATTATCATTGCTTC+TGG + chr1.2:8114093-8114112 None:intergenic 35.0%
GTCTTAGGTGATAAGGTAAA+AGG - chr1.2:8114032-8114051 MS.gene058502:intron 35.0%
TAAACTCATCTTCGTCATGA+AGG + chr1.2:8115357-8115376 None:intergenic 35.0%
TAAGGACCAAAGTGATGATT+GGG - chr1.2:8114106-8114125 MS.gene058502:intron 35.0%
TCAATTGAAGTTCTTGTGTG+TGG - chr1.2:8113116-8113135 MS.gene058502:CDS 35.0%
TCCCAGAAGCAATGATAATA+AGG - chr1.2:8114088-8114107 MS.gene058502:intron 35.0%
TCTTATGTAGGCTATGTGTT+AGG - chr1.2:8114574-8114593 MS.gene058502:CDS 35.0%
TTCATGCAGGACGAATTAAT+GGG - chr1.2:8114729-8114748 MS.gene058502:intron 35.0%
! AATGTTTATGTCTGGATTGG+CGG + chr1.2:8115126-8115145 None:intergenic 35.0%
! ACTATGGATTTTTGTTCTGC+AGG - chr1.2:8114631-8114650 MS.gene058502:intron 35.0%
!! GATTCATCCACTTCGTTTTT+CGG - chr1.2:8113583-8113602 MS.gene058502:intron 35.0%
!! TCGTTTTTCGGTGTATATGA+TGG - chr1.2:8113595-8113614 MS.gene058502:intron 35.0%
!! TTTTAAGTACTTGTCTGCAG+TGG - chr1.2:8113299-8113318 MS.gene058502:intron 35.0%
!!! ACACAAATTTTCAGGTAAGG+CGG - chr1.2:8113699-8113718 MS.gene058502:intron 35.0%
!!! CTCTTACGAAAGCATTTTTC+AGG - chr1.2:8113799-8113818 MS.gene058502:intron 35.0%
AATAAAGGAAGCTCACTTGC+CGG + chr1.2:8114802-8114821 None:intergenic 40.0%
ACGCTGCGTAATATCTAGAA+TGG - chr1.2:8114348-8114367 MS.gene058502:CDS 40.0%
ATGTAGGCTATGTGTTAGGT+AGG - chr1.2:8114578-8114597 MS.gene058502:CDS 40.0%
CAGCATTCGCAACAAAAAGT+AGG + chr1.2:8114321-8114340 None:intergenic 40.0%
CATAGTACATACCTACCTAC+CGG - chr1.2:8114780-8114799 MS.gene058502:intron 40.0%
GGGTTCAATGGAATGATTGA+AGG - chr1.2:8114053-8114072 MS.gene058502:intron 40.0%
TCAAAGCCCAATCATCACTT+TGG + chr1.2:8114115-8114134 None:intergenic 40.0%
TTAATATTCTGCAGGTGACG+TGG - chr1.2:8115055-8115074 MS.gene058502:intron 40.0%
TTGAAGTTCTTGTGTGTGGA+TGG - chr1.2:8113120-8113139 MS.gene058502:CDS 40.0%
TTGCCTATCAAGCCAACAAT+TGG - chr1.2:8115486-8115505 MS.gene058502:intron 40.0%
! GCGTAATATCTAGAATGGTC+AGG - chr1.2:8114353-8114372 MS.gene058502:CDS 40.0%
! TAGGGTAATCTGACTTGCAA+TGG + chr1.2:8115160-8115179 None:intergenic 40.0%
! TGATAGCTTGTGATGGCATA+TGG - chr1.2:8115380-8115399 MS.gene058502:intron 40.0%
!! ATGCTTTATTTGGAGGCAAG+AGG - chr1.2:8114923-8114942 MS.gene058502:intron 40.0%
!! CTACCAATTGTTGGCTTGAT+AGG + chr1.2:8115492-8115511 None:intergenic 40.0%
!! GTGATGATTGGGCTTTGAAA+AGG - chr1.2:8114117-8114136 MS.gene058502:intron 40.0%
!! TGATTGGGCTTTGAAAAGGT+AGG - chr1.2:8114121-8114140 MS.gene058502:intron 40.0%
!!! CTACTTTTTGTTGCGAATGC+TGG - chr1.2:8114319-8114338 MS.gene058502:CDS 40.0%
AGAATGGATGAGATGATGCG+TGG - chr1.2:8113984-8114003 MS.gene058502:intron 45.0%
ATGAGATGATGCGTGGTCAA+AGG - chr1.2:8113991-8114010 MS.gene058502:intron 45.0%
GCTTGTGATGGCATATGGTA+TGG - chr1.2:8115385-8115404 MS.gene058502:intron 45.0%
GGTCCATCAAAGTCTGAATG+AGG + chr1.2:8114256-8114275 None:intergenic 45.0%
GTGTATATGATGGTCCATGG+AGG - chr1.2:8113605-8113624 MS.gene058502:intron 45.0%
TAAGTACTTGTCTGCAGTGG+CGG - chr1.2:8113302-8113321 MS.gene058502:intron 45.0%
TCCTGAGCTTGTGATTGAGA+AGG - chr1.2:8114679-8114698 MS.gene058502:intron 45.0%
TCCTTCTCAATCACAAGCTC+AGG + chr1.2:8114683-8114702 None:intergenic 45.0%
TCGGTGTATATGATGGTCCA+TGG - chr1.2:8113602-8113621 MS.gene058502:intron 45.0%
TGAGATGATGCGTGGTCAAA+GGG - chr1.2:8113992-8114011 MS.gene058502:intron 45.0%
TGCATGTCTCGTGATTTGAG+AGG - chr1.2:8114499-8114518 MS.gene058502:CDS 45.0%
TGGAGGGAATTAGCAGTCTT+AGG - chr1.2:8114017-8114036 MS.gene058502:intron 45.0%
! AGGGGGAATGTCACTTACTA+AGG + chr1.2:8114834-8114853 None:intergenic 45.0%
! CTTTATTTGGAGGCAAGAGG+AGG - chr1.2:8114926-8114945 MS.gene058502:intron 45.0%
! GACTTTGATGGACCAACTTC+AGG - chr1.2:8114262-8114281 MS.gene058502:intron 45.0%
!!! GCTGGTGGTTTTATTCATGC+AGG - chr1.2:8114716-8114735 MS.gene058502:intron 45.0%
ATCATAGCTCAAGGCGCAGA+GGG + chr1.2:8114853-8114872 None:intergenic 50.0%
CAAGCAGTGCTTCCTGAAGT+TGG + chr1.2:8114277-8114296 None:intergenic 50.0%
CTTCACTCTTGAGCACCTGT+TGG + chr1.2:8113753-8113772 None:intergenic 50.0%
GAGATGATGCGTGGTCAAAG+GGG - chr1.2:8113993-8114012 MS.gene058502:intron 50.0%
GGGCCTCATTCAGACTTTGA+TGG - chr1.2:8114250-8114269 MS.gene058502:intron 50.0%
TATCATAGCTCAAGGCGCAG+AGG + chr1.2:8114854-8114873 None:intergenic 50.0%
! TCTTGAGCACCTGTTGGTGA+AGG + chr1.2:8113747-8113766 None:intergenic 50.0%
AAGCTCACTTGCCGGTAGGT+AGG + chr1.2:8114794-8114813 None:intergenic 55.0%
AAGGAAGCTCACTTGCCGGT+AGG + chr1.2:8114798-8114817 None:intergenic 55.0%
TCATAGCTCAAGGCGCAGAG+GGG + chr1.2:8114852-8114871 None:intergenic 55.0%
TGATGCGTGGTCAAAGGGGA+TGG - chr1.2:8113997-8114016 MS.gene058502:intron 55.0%
TGCCAAGCACCTTCACCAAC+AGG - chr1.2:8113735-8113754 MS.gene058502:intron 55.0%
!! CACCTGTTGGTGAAGGTGCT+TGG + chr1.2:8113740-8113759 None:intergenic 55.0%
CATAGCTCAAGGCGCAGAGG+GGG + chr1.2:8114851-8114870 None:intergenic 60.0%
GCATGCGGCGCATCTTGATG+TGG - chr1.2:8113561-8113580 MS.gene058502:intron 60.0%
GCGTGGTCAAAGGGGATGGA+GGG - chr1.2:8114001-8114020 MS.gene058502:intron 60.0%
TGCGTGGTCAAAGGGGATGG+AGG - chr1.2:8114000-8114019 MS.gene058502:intron 60.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 8113096 8115537 8113096 ID=MS.gene058502
chr1.2 mRNA 8113096 8115537 8113096 ID=MS.gene058502.t1;Parent=MS.gene058502
chr1.2 exon 8115526 8115537 8115526 ID=MS.gene058502.t1.exon1;Parent=MS.gene058502.t1
chr1.2 CDS 8115526 8115537 8115526 ID=cds.MS.gene058502.t1;Parent=MS.gene058502.t1
chr1.2 exon 8115007 8115071 8115007 ID=MS.gene058502.t1.exon2;Parent=MS.gene058502.t1
chr1.2 CDS 8115007 8115071 8115007 ID=cds.MS.gene058502.t1;Parent=MS.gene058502.t1
chr1.2 exon 8114495 8114647 8114495 ID=MS.gene058502.t1.exon3;Parent=MS.gene058502.t1
chr1.2 CDS 8114495 8114647 8114495 ID=cds.MS.gene058502.t1;Parent=MS.gene058502.t1
chr1.2 exon 8114293 8114383 8114293 ID=MS.gene058502.t1.exon4;Parent=MS.gene058502.t1
chr1.2 CDS 8114293 8114383 8114293 ID=cds.MS.gene058502.t1;Parent=MS.gene058502.t1
chr1.2 exon 8113857 8113980 8113857 ID=MS.gene058502.t1.exon5;Parent=MS.gene058502.t1
chr1.2 CDS 8113857 8113980 8113857 ID=cds.MS.gene058502.t1;Parent=MS.gene058502.t1
chr1.2 exon 8113488 8113564 8113488 ID=MS.gene058502.t1.exon6;Parent=MS.gene058502.t1
chr1.2 CDS 8113488 8113564 8113488 ID=cds.MS.gene058502.t1;Parent=MS.gene058502.t1
chr1.2 exon 8113232 8113284 8113232 ID=MS.gene058502.t1.exon7;Parent=MS.gene058502.t1
chr1.2 CDS 8113232 8113284 8113232 ID=cds.MS.gene058502.t1;Parent=MS.gene058502.t1
chr1.2 exon 8113096 8113150 8113096 ID=MS.gene058502.t1.exon8;Parent=MS.gene058502.t1
chr1.2 CDS 8113096 8113150 8113096 ID=cds.MS.gene058502.t1;Parent=MS.gene058502.t1
Gene Sequence

>MS.gene058502

ATGGAAGATGCAGTAAGTAATCAATTGAAGTTCTTGTGTGTGGATGGATTTTTCTTAGCTTGTTTTTTTTATAGATGCATCATGTATTTCATACTTGCAATTTAAGTTTATTTAGAATTGTAGAAGCAAGTATATGTGGTCGAATTCTATGAGAAATGTGCATAAGATTCCTTGAATTTTTTCAAAAACTCTGCTTCAAATTATTTTAAGTACTTGTCTGCAGTGGCGGCGAGTTTGCTGAAATCGTAGTACCATCATGATTCTGTTGAAGCTTCAAAGTGTAGTTTTTGTCAAAATCATGATGGCGCAGTGTGATTGAATTGTGTTTTGGGGAATAAATGTGTATACCGTCAATTATGCTTTTAACTTTGTTTATTGGAGCTCATTTGATGTTATTTGTGTTGCTTAGATTGAACGTTAATATAATATGTAGTTAATTACTTTTCATTCTTTTTTCTTTTGCTAGCATGCGGCGCATCTTGATGTGGATTCATCCACTTCGTTTTTCGGTGTATATGATGGTCCATGGAGGTAAAATTTGATTATTTGGAAGGATGGCGTTTATGACAGAAATTATGTGTATCTTTTTAATCAAAATATGTTACACAAATTTTCAGGTAAGGCGGTTGCAAAGTTTTGTGCCAAGCACCTTCACCAACAGGTGCTCAAGAGTGAAGAATACATAGCTGAGATGTTGGAACATCTCTTACGAAAGCATTTTTCAGGTAAGCTAAAAAAAGAAAGAAAGCCTATTGTGAAGTTTTGATTTTATCATTTGTCTTCTGTTCAAATTGATACAATATAAGAAAAATTATCACAAGTTCAGGTTATTTTCCACTATGAAAGTAACAAAAAAGTGAGTTATGAACTATATTTTGGTTATTATGCAGAATGGATGAGATGATGCGTGGTCAAAGGGGATGGAGGGAATTAGCAGTCTTAGGTGATAAGGTAAAAGGGTTCAATGGAATGATTGAAGGATTGATTCGGTCTCCCAGAAGCAATGATAATAAGGACCAAAGTGATGATTGGGCTTTGAAAAGGTAGGAATGATCTCTGAAGAATACTTCGATGTTTACTTTCTAGCATCGTTTGATATACTTAGTTTCTTTTTGTTGCCATTCTGTAATTTGATCTTTTTATATTGTAAACAGGGGCCTCATTCAGACTTTGATGGACCAACTTCAGGAAGCACTGCTTGTGTTGCAATCATTAGAAACAACCTACTTTTTGTTGCGAATGCTGGTGATTCACGCTGCGTAATATCTAGAATGGTCAGGTAACTTTAGAACAGAAATTTTTGAAATTTTAAGTTTAGCATTAATTTGTATAATTGGATGAACGTGTGTGTACACTACCTGTTATGTTATTTTTTTTTAAATTTCTATAAACATCGTGTACAATGCATGTCTCGTGATTTGAGAGGCTAAATACATCAAGATATTCTTTTAAAAGCCTAGAATTTGTTTAATTCTTTTTCTTATGTAGGCTATGTGTTAGGTAGGAACTTGAAGATATTGACATAATTTTTTCTGACTATGGATTTTTGTTCTGCAGGCATACAATTTATCTAGAGATCACAATCCTGAGCTTGTGATTGAGAAGGAAAGAATCTATAAAGCTGGTGGTTTTATTCATGCAGGACGAATTAATGGGAGTTTAAATCTTGCAAGAGCTATAGGTACATAGTACATACCTACCTACCGGCAAGTGAGCTTCCTTTATTCAGTTTTAACCTTAGTAAGTGACATTCCCCCTCTGCGCCTTGAGCTATGATAATCTTAGTGTACCGAAAATAAAAGGAAACTTCCTATTATTTTATTTTGTATGCTTTATTTGGAGGCAAGAGGAGGTGTACTTGTATGCATGTTGTTTGGTTTCAAACTGTTCTTCTTGACTATAGTTTCTTTTTGAAGAAGATGCACTTATATGGTTTCTATTGTTTCCATTTAATATGTTTTAATATTCTGCAGGTGACGTGGACTTCAAAAATAATAGATTTCTTTCTGCTGAAAAACAAGTTGTGACCGCCAATCCAGACATAAACATTGTAAGTTTGCTCCATTGCAAGTCAGATTACCCTATTTCTCAATAGACAATATGGTAGAATCAATAATGAAATGCTTAGTCAAGAGTTTCGGTATCTGCTACTACTACACGTGTTTCAGCTTTTCGTAATTTTTTTTTTATTTTTTAAGATGAACTTTTAGTAATGTTCTGAATGAGAGTTTTGTTTTTGGAATTATATCATAGGTTGACCTTCATGACGAAGATGAGTTTATAGTGATAGCTTGTGATGGCATATGGTATGGTTCTTATGCTTGATATCCACAATTCCCCATTTTAATAAATGTCATTTCTTGAAAATTCTTTTTCTTACGTTTCAGGGATTGCCTATCAAGCCAACAATTGGTAGATTTTGTACGTCAAGAACTTCTCTTG

Protein sequence

>MS.gene058502.t1

MEDAHAAHLDVDSSTSFFGVYDGPWRMDEMMRGQRGWRELAVLGDKVKGFNGMIEGLIRSPRSNDNKDQSDDWALKRGLIQTLMDQLQEALLVLQSLETTYFLLRMLAYNLSRDHNPELVIEKERIYKAGGFIHAGRINGSLNLARAIGDVDFKNNRFLSAEKQVVTANPDINIVDLHDEDEFIVIACDGIWDCLSSQQLVDFVRQELLL