Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83960.t1 | XP_013452368.1 | 95.8 | 957 | 38 | 1 | 1 | 955 | 1 | 957 | 0.00E+00 | 1514.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83960.t1 | A0A072UAG3 | 95.8 | 957 | 38 | 1 | 1 | 955 | 1 | 957 | 0.0e+00 | 1514.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049137 | MS.gene83960 | 0.801651 | 8.14E-49 | -1.69E-46 |
| MS.gene049257 | MS.gene83960 | 0.812624 | 3.86E-51 | -1.69E-46 |
| MS.gene050670 | MS.gene83960 | 0.817204 | 3.72E-52 | -1.69E-46 |
| MS.gene050812 | MS.gene83960 | 0.859583 | 3.74E-63 | -1.69E-46 |
| MS.gene05081 | MS.gene83960 | 0.820572 | 6.39E-53 | -1.69E-46 |
| MS.gene051387 | MS.gene83960 | 0.818421 | 1.98E-52 | -1.69E-46 |
| MS.gene051525 | MS.gene83960 | 0.82496 | 6.08E-54 | -1.69E-46 |
| MS.gene051582 | MS.gene83960 | 0.820341 | 7.22E-53 | -1.69E-46 |
| MS.gene051838 | MS.gene83960 | 0.806449 | 8.18E-50 | -1.69E-46 |
| MS.gene052469 | MS.gene83960 | 0.805448 | 1.33E-49 | -1.69E-46 |
| MS.gene052485 | MS.gene83960 | 0.80909 | 2.25E-50 | -1.69E-46 |
| MS.gene053107 | MS.gene83960 | 0.84986 | 2.47E-60 | -1.69E-46 |
| MS.gene054719 | MS.gene83960 | 0.842506 | 2.48E-58 | -1.69E-46 |
| MS.gene055206 | MS.gene83960 | 0.805512 | 1.29E-49 | -1.69E-46 |
| MS.gene055539 | MS.gene83960 | 0.861132 | 1.27E-63 | -1.69E-46 |
| MS.gene05553 | MS.gene83960 | 0.823678 | 1.22E-53 | -1.69E-46 |
| MS.gene055605 | MS.gene83960 | 0.820669 | 6.07E-53 | -1.69E-46 |
| MS.gene056796 | MS.gene83960 | 0.808331 | 3.26E-50 | -1.69E-46 |
| MS.gene056877 | MS.gene83960 | 0.812123 | 4.97E-51 | -1.69E-46 |
| MS.gene057124 | MS.gene83960 | 0.800225 | 1.59E-48 | -1.69E-46 |
| MS.gene057332 | MS.gene83960 | 0.835429 | 1.69E-56 | -1.69E-46 |
| MS.gene058700 | MS.gene83960 | 0.836174 | 1.09E-56 | -1.69E-46 |
| MS.gene059141 | MS.gene83960 | 0.82429 | 8.75E-54 | -1.69E-46 |
| MS.gene060407 | MS.gene83960 | 0.816095 | 6.60E-52 | -1.69E-46 |
| MS.gene06092 | MS.gene83960 | 0.803838 | 2.88E-49 | -1.69E-46 |
| MS.gene061154 | MS.gene83960 | 0.810451 | 1.15E-50 | -1.69E-46 |
| MS.gene061231 | MS.gene83960 | 0.823068 | 1.69E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83960.t1 | MTR_6g053740 | 96.343 | 957 | 33 | 1 | 1 | 955 | 1 | 957 | 0.0 | 1886 |
| MS.gene83960.t1 | MTR_5g053260 | 32.836 | 402 | 262 | 4 | 415 | 813 | 144 | 540 | 1.27e-59 | 214 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83960.t1 | AT5G23890 | 46.957 | 986 | 444 | 25 | 1 | 949 | 1 | 944 | 0.0 | 741 |
| MS.gene83960.t1 | AT5G23890 | 47.958 | 857 | 377 | 20 | 125 | 949 | 1 | 820 | 0.0 | 683 |
| MS.gene83960.t1 | AT5G52410 | 57.514 | 539 | 198 | 5 | 410 | 924 | 224 | 755 | 0.0 | 597 |
| MS.gene83960.t1 | AT5G52410 | 35.772 | 123 | 59 | 5 | 1 | 117 | 1 | 109 | 6.49e-11 | 67.0 |
| MS.gene83960.t1 | AT5G52410 | 57.514 | 539 | 198 | 5 | 410 | 924 | 215 | 746 | 0.0 | 596 |
| MS.gene83960.t1 | AT5G52410 | 35.772 | 123 | 59 | 5 | 1 | 117 | 1 | 109 | 5.48e-11 | 67.0 |
| MS.gene83960.t1 | AT5G52410 | 58.383 | 507 | 183 | 4 | 442 | 924 | 2 | 504 | 0.0 | 573 |
| MS.gene83960.t1 | AT3G25680 | 35.219 | 389 | 244 | 3 | 427 | 813 | 171 | 553 | 8.02e-63 | 223 |
Find 212 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATCTTCGCTTAAAATCTT+AGG | 0.129669 | 6.1:+31307461 | None:intergenic |
| CAGATGCTGCACCGACTTTC+TGG | 0.137059 | 6.1:-31304552 | MS.gene83960:CDS |
| TACTGGCTTACCATCATAAT+TGG | 0.190822 | 6.1:+31307637 | None:intergenic |
| AAGATTCCTTCTTCTTCTTC+TGG | 0.201471 | 6.1:+31310094 | None:intergenic |
| ATTTCTGAATCTCCAAATTC+TGG | 0.205362 | 6.1:-31307281 | MS.gene83960:CDS |
| CTAGTAGCTGATCTTTCTTC+TGG | 0.206191 | 6.1:-31304486 | MS.gene83960:CDS |
| AAATTACAGGCTGAAGAATT+TGG | 0.211510 | 6.1:-31302304 | MS.gene83960:CDS |
| AGTAGTTTCTGCAGCTTTAC+AGG | 0.219788 | 6.1:-31307222 | MS.gene83960:CDS |
| CATCCTGCTGCTCATTATTA+AGG | 0.228977 | 6.1:+31307612 | None:intergenic |
| CAGCATAGTGCCGTCGAATT+TGG | 0.233489 | 6.1:-31302238 | MS.gene83960:CDS |
| AGAATACTGATTTACTTAAA+TGG | 0.242313 | 6.1:+31307369 | None:intergenic |
| TGACAGGGCTGAAAGCTTAT+TGG | 0.253989 | 6.1:-31302443 | MS.gene83960:CDS |
| TCTTCTGATGCCGATATTAC+AGG | 0.260713 | 6.1:-31308058 | MS.gene83960:CDS |
| GAGAAAAGGGATCCAGAATT+TGG | 0.266196 | 6.1:+31307269 | None:intergenic |
| TCACCAAGAACATACCTTTC+AGG | 0.266855 | 6.1:+31304960 | None:intergenic |
| TGAACTTATGAGCGAACTTT+TGG | 0.268578 | 6.1:+31302149 | None:intergenic |
| TTTCTGGTTCAGCATTAAAT+TGG | 0.274007 | 6.1:+31307666 | None:intergenic |
| CTTTCAGGGGAGAAGTAAAA+AGG | 0.280105 | 6.1:+31304975 | None:intergenic |
| AAGAAGAAGAAGGAATCTTT+TGG | 0.292775 | 6.1:-31310090 | MS.gene83960:CDS |
| ACAAGATCCTGGCGCGATAA+AGG | 0.293222 | 6.1:+31304720 | None:intergenic |
| TTTCAGTTTGAAGTGGTATT+TGG | 0.300010 | 6.1:+31307768 | None:intergenic |
| GGTTGGTCCGATTCAGCAAC+TGG | 0.306448 | 6.1:-31310135 | MS.gene83960:CDS |
| ATAGTCACCTTGAATGTTAT+CGG | 0.317196 | 6.1:+31307946 | None:intergenic |
| TCCAAGAGATAAGGCAAAAT+AGG | 0.322176 | 6.1:+31308266 | None:intergenic |
| GGATCTTGTCAGCTGGAAAA+TGG | 0.323426 | 6.1:-31304706 | MS.gene83960:CDS |
| GGAGCAAGAAAATGGTAAAT+TGG | 0.328498 | 6.1:-31308011 | MS.gene83960:CDS |
| GCAACCTTTCTGTCAGCTTC+AGG | 0.332101 | 6.1:+31304663 | None:intergenic |
| GGAATAATTGCTCTTGCATT+TGG | 0.338900 | 6.1:-31304456 | MS.gene83960:intron |
| TGCTTGTTCTCTCACTCGTT+TGG | 0.340913 | 6.1:+31302603 | None:intergenic |
| TCCAAAACCTCATCTGGTTT+AGG | 0.343552 | 6.1:-31307551 | MS.gene83960:CDS |
| CCTCTAGATCATACTGTAAA+CGG | 0.344200 | 6.1:+31303793 | None:intergenic |
| ACTATTGATGATTCTGATAT+AGG | 0.344484 | 6.1:-31307920 | MS.gene83960:CDS |
| GATATTTCCAAAACCTCATC+TGG | 0.348534 | 6.1:-31307557 | MS.gene83960:CDS |
| GGCCTCCAAAACAAAATTAC+AGG | 0.351209 | 6.1:-31302317 | MS.gene83960:CDS |
| GTTGTGGGAGTAGGAGTTGC+TGG | 0.351961 | 6.1:-31308312 | MS.gene83960:CDS |
| ATTTACTTGTCCTGTAATAT+CGG | 0.352628 | 6.1:+31308048 | None:intergenic |
| GCAGGAATCAAAACCTTTCC+TGG | 0.353974 | 6.1:+31307194 | None:intergenic |
| AACAAGTTGGAGCAAGAAAA+TGG | 0.356887 | 6.1:-31308019 | MS.gene83960:CDS |
| CTGATCATCTAATGATGAAT+TGG | 0.359092 | 6.1:+31307337 | None:intergenic |
| TTCTAAAGGTGATGGGTTAT+CGG | 0.359699 | 6.1:-31310157 | MS.gene83960:CDS |
| CCAATTTATATCAAAATTGA+AGG | 0.360066 | 6.1:-31302344 | MS.gene83960:CDS |
| CAAAAGCTCCTGTTCATAAC+TGG | 0.363297 | 6.1:+31304088 | None:intergenic |
| TTACTTAAATGGTAATTTCC+AGG | 0.366462 | 6.1:+31307380 | None:intergenic |
| ACCTAAACCAGATGAGGTTT+TGG | 0.372911 | 6.1:+31307550 | None:intergenic |
| GAAGGTACAAAGCGAGTTGC+TGG | 0.388206 | 6.1:-31302202 | MS.gene83960:CDS |
| ATTTCTAATCTCACTTGAAC+TGG | 0.390712 | 6.1:+31307583 | None:intergenic |
| TTTCCAGGCTTGGCAGAAGC+TGG | 0.396329 | 6.1:-31305059 | MS.gene83960:intron |
| AGCAAGGGCAATAGCGGCTT+GGG | 0.396547 | 6.1:+31304232 | None:intergenic |
| TTATCTCTTGGAAAACGAAA+TGG | 0.397448 | 6.1:-31308255 | MS.gene83960:CDS |
| GCCGCTATTGCCCTTGCTAC+TGG | 0.401253 | 6.1:-31304227 | MS.gene83960:CDS |
| AAGAGAGGATCAAGAAGCTT+CGG | 0.401995 | 6.1:-31303848 | MS.gene83960:CDS |
| CAATTCATCATTAGATGATC+AGG | 0.410592 | 6.1:-31307336 | MS.gene83960:CDS |
| CTGCTAGCGGTGCTCTTTCA+AGG | 0.412353 | 6.1:-31305379 | MS.gene83960:intron |
| AAAGTTAAGGAATGAGGTTC+AGG | 0.412432 | 6.1:-31303919 | MS.gene83960:CDS |
| TAGTAGCTGATCTTTCTTCT+GGG | 0.414299 | 6.1:-31304485 | MS.gene83960:CDS |
| TGATCTTTCTTCTGGGGAGC+AGG | 0.415092 | 6.1:-31304478 | MS.gene83960:CDS |
| CAACTCAAGGGTCAGTTGAC+AGG | 0.415518 | 6.1:-31302459 | MS.gene83960:CDS |
| AGAACAAGCAAGAGCATTAG+AGG | 0.416242 | 6.1:-31302590 | MS.gene83960:CDS |
| GAAAGATCAGCTACTAGTGC+AGG | 0.416302 | 6.1:+31304492 | None:intergenic |
| GAAGATGATCAAGACAATAT+TGG | 0.419569 | 6.1:-31307446 | MS.gene83960:CDS |
| AGATTCCTTCTTCTTCTTCT+GGG | 0.423936 | 6.1:+31310095 | None:intergenic |
| ACGCCAAGGCCGGCTCTGAA+TGG | 0.424465 | 6.1:-31310191 | MS.gene83960:CDS |
| CCTGAGTCCGATAACATTCA+AGG | 0.424789 | 6.1:-31307953 | MS.gene83960:CDS |
| TATATCAAAATTGAAGGAAT+GGG | 0.425466 | 6.1:-31302338 | MS.gene83960:CDS |
| CAGTGACCCAGTTGCTGAAT+CGG | 0.427895 | 6.1:+31310128 | None:intergenic |
| CATCTTCGCTTAAAATCTTA+GGG | 0.430588 | 6.1:+31307462 | None:intergenic |
| AGAAGAAGACAGTGTTGCCT+TGG | 0.434500 | 6.1:-31303985 | MS.gene83960:CDS |
| GACCCATTCAGAGCCGGCCT+TGG | 0.436320 | 6.1:+31310188 | None:intergenic |
| AGAGGAGGCTAGAGATCGTT+GGG | 0.438647 | 6.1:-31302572 | MS.gene83960:CDS |
| ACTAGTGCAGGGCATGCATT+AGG | 0.440026 | 6.1:+31304504 | None:intergenic |
| GAAGTTACATGGCTCAATGC+TGG | 0.440097 | 6.1:-31302493 | MS.gene83960:CDS |
| TGCTCATTATTAAGGTCTAC+TGG | 0.440726 | 6.1:+31307620 | None:intergenic |
| CAAGATCCTGGCGCGATAAA+GGG | 0.441304 | 6.1:+31304721 | None:intergenic |
| TGGTGGGGTTGAAGGCTAAT+CGG | 0.442642 | 6.1:+31310292 | None:intergenic |
| CGCCAAGGCCGGCTCTGAAT+GGG | 0.442924 | 6.1:-31310190 | MS.gene83960:CDS |
| CTTTCAGGAGTTGTGGGAGT+AGG | 0.444823 | 6.1:-31308321 | MS.gene83960:intron |
| TGTCAAGTTCTGACCTTGAA+TGG | 0.445130 | 6.1:+31305146 | None:intergenic |
| TCTAAAGGTGATGGGTTATC+GGG | 0.447165 | 6.1:-31310156 | MS.gene83960:CDS |
| CGATTCAGCAACTGGGTCAC+TGG | 0.449043 | 6.1:-31310127 | MS.gene83960:CDS |
| TGGCCTTAACAAAACTCAAC+AGG | 0.451309 | 6.1:-31307426 | MS.gene83960:CDS |
| CTGCAGCCCTTTATCGCGCC+AGG | 0.451648 | 6.1:-31304727 | MS.gene83960:intron |
| AGCGAGTTGCTGGTGATTGT+AGG | 0.453284 | 6.1:-31302192 | MS.gene83960:CDS |
| CTCTAGATCATACTGTAAAC+GGG | 0.455789 | 6.1:+31303794 | None:intergenic |
| TGCGGCTATTGAATCAGAAA+TGG | 0.457851 | 6.1:-31303952 | MS.gene83960:CDS |
| TAGCAAGGGCAATAGCGGCT+TGG | 0.459860 | 6.1:+31304231 | None:intergenic |
| AAATCACCAGGTTGAACATC+AGG | 0.461055 | 6.1:+31305437 | None:intergenic |
| TATTAATGCCAGTTATGAAC+AGG | 0.463586 | 6.1:-31304096 | MS.gene83960:CDS |
| GAATGCCAGGAGCAGAGAAA+AGG | 0.464135 | 6.1:+31307255 | None:intergenic |
| CACCAAGAACATACCTTTCA+GGG | 0.466229 | 6.1:+31304961 | None:intergenic |
| AGAGAGGATCAAGAAGCTTC+GGG | 0.466699 | 6.1:-31303847 | MS.gene83960:CDS |
| TTATATCAAAATTGAAGGAA+TGG | 0.469067 | 6.1:-31302339 | MS.gene83960:CDS |
| TTGTCACAGGTTTATCTGGT+TGG | 0.469952 | 6.1:+31304258 | None:intergenic |
| AGGCCGGCTCTGAATGGGTC+GGG | 0.471957 | 6.1:-31310185 | MS.gene83960:CDS |
| TGACTTGCCTGCCTTTGAGA+TGG | 0.477195 | 6.1:+31302273 | None:intergenic |
| GAAATTGTGTTGTTTGACTC+AGG | 0.477685 | 6.1:+31307488 | None:intergenic |
| CGCGCCAGGATCTTGTCAGC+TGG | 0.483759 | 6.1:-31304713 | MS.gene83960:CDS |
| TAGTTTGCTTTCAGGAGTTG+TGG | 0.483993 | 6.1:-31308328 | MS.gene83960:intron |
| GGGTCTGATTCTAAAGGTGA+TGG | 0.486869 | 6.1:-31310165 | MS.gene83960:CDS |
| AGTGGCATCATTGATACCAT+TGG | 0.492279 | 6.1:+31307865 | None:intergenic |
| TACTTAAATGGTAATTTCCA+GGG | 0.494569 | 6.1:+31307381 | None:intergenic |
| AAGTTACATGGCTCAATGCT+GGG | 0.495523 | 6.1:-31302492 | MS.gene83960:CDS |
| TTTGGATTAACTGTAAAAGA+AGG | 0.497057 | 6.1:-31302220 | MS.gene83960:CDS |
| ACTGATGGAGCAGGAATGCC+AGG | 0.497805 | 6.1:+31307242 | None:intergenic |
| AACTCAACAGGTCTTATATG+AGG | 0.501563 | 6.1:-31307414 | MS.gene83960:CDS |
| ACTGGCTTACCATCATAATT+GGG | 0.503200 | 6.1:+31307638 | None:intergenic |
| AATGCCAGGAGCAGAGAAAA+GGG | 0.505227 | 6.1:+31307256 | None:intergenic |
| GAAGCCTTTGACAACACATC+AGG | 0.506026 | 6.1:-31308092 | MS.gene83960:CDS |
| AGACCTTAATAATGAGCAGC+AGG | 0.511809 | 6.1:-31307615 | MS.gene83960:CDS |
| TAGAGGAGGCTAGAGATCGT+TGG | 0.514166 | 6.1:-31302573 | MS.gene83960:CDS |
| TATGAGGAACAGAGTATCCC+TGG | 0.516671 | 6.1:-31307398 | MS.gene83960:CDS |
| AGTTTGCTTTCAGGAGTTGT+GGG | 0.517953 | 6.1:-31308327 | MS.gene83960:intron |
| TGGAATCAGGACTTGGGCAG+AGG | 0.518677 | 6.1:-31302632 | MS.gene83960:intron |
| TACAGTTAATCCAAATTCGA+CGG | 0.518733 | 6.1:+31302228 | None:intergenic |
| TGAACCTGATCAAAAGCTGC+AGG | 0.521188 | 6.1:+31307176 | None:intergenic |
| AGGCTTCAGCCGAAGTTACA+TGG | 0.522394 | 6.1:-31302504 | MS.gene83960:CDS |
| GATCTTTCTTCTGGGGAGCA+GGG | 0.527714 | 6.1:-31304477 | MS.gene83960:CDS |
| TCCGTGCATAACGCCAAGGC+CGG | 0.528113 | 6.1:-31310201 | MS.gene83960:CDS |
| TTGGAGAAGCTCAAACGAAT+GGG | 0.528805 | 6.1:-31302424 | MS.gene83960:CDS |
| CAAAGAAGTGGTGGAAGACG+AGG | 0.530929 | 6.1:+31310225 | None:intergenic |
| GCGAGTTGCTGGTGATTGTA+GGG | 0.532203 | 6.1:-31302191 | MS.gene83960:CDS |
| TTTACAGGTGCCTCCAGGAA+AGG | 0.532486 | 6.1:-31307207 | MS.gene83960:CDS |
| AGTCTGACGTGATGAGAAAG+AGG | 0.539581 | 6.1:+31310264 | None:intergenic |
| AACTCAAGGGTCAGTTGACA+GGG | 0.540042 | 6.1:-31302458 | MS.gene83960:CDS |
| GCAGCTTTACAGGTGCCTCC+AGG | 0.540450 | 6.1:-31307212 | MS.gene83960:CDS |
| AAGCTGGACTTATTGAAAGC+AGG | 0.543112 | 6.1:-31305043 | MS.gene83960:CDS |
| AATCGGAGTTGAAGAGAAGT+TGG | 0.544703 | 6.1:+31310309 | None:intergenic |
| CGCTGGTTGGTATCTGCTAG+CGG | 0.545213 | 6.1:-31305392 | MS.gene83960:CDS |
| GCCGGCCTTGGCGTTATGCA+CGG | 0.546961 | 6.1:+31310200 | None:intergenic |
| TGAAGAGGCAAAACATGAGT+TGG | 0.547136 | 6.1:-31304027 | MS.gene83960:CDS |
| CTTGTTGCATGAGTCAGCTC+GGG | 0.547834 | 6.1:-31307819 | MS.gene83960:CDS |
| GAAAAGCCTTGTCCATGGCC+AGG | 0.548184 | 6.1:-31303764 | MS.gene83960:intron |
| GAAAACATACCCAATTATGA+TGG | 0.549370 | 6.1:-31307647 | MS.gene83960:CDS |
| GCATTATCTATGTACATGGC+AGG | 0.549375 | 6.1:+31305219 | None:intergenic |
| TAAGGCAAAATAGGTAAGCC+CGG | 0.551085 | 6.1:+31308275 | None:intergenic |
| CCGTTTACAGTATGATCTAG+AGG | 0.551417 | 6.1:-31303793 | MS.gene83960:CDS |
| GCTTCCTGAAGCTGACAGAA+AGG | 0.553773 | 6.1:-31304667 | MS.gene83960:intron |
| GGGGAGCAGTACTCAACTCA+AGG | 0.554003 | 6.1:-31302472 | MS.gene83960:CDS |
| ACCTCCTGATGTGTTGTCAA+AGG | 0.557320 | 6.1:+31308088 | None:intergenic |
| CAAGAAAATGGTAAATTGGA+AGG | 0.558455 | 6.1:-31308007 | MS.gene83960:CDS |
| TCTAATGATGAATTGGTCAA+TGG | 0.560047 | 6.1:+31307344 | None:intergenic |
| GAAGCTGCCATCTCAAAGGC+AGG | 0.560559 | 6.1:-31302280 | MS.gene83960:CDS |
| ACTTGTTGCATGAGTCAGCT+CGG | 0.560612 | 6.1:-31307820 | MS.gene83960:CDS |
| AAGGCCGGCTCTGAATGGGT+CGG | 0.563902 | 6.1:-31310186 | MS.gene83960:CDS |
| ACTCAGGAGATGAATAATCC+CGG | 0.564022 | 6.1:+31307969 | None:intergenic |
| AGACCCGACCCATTCAGAGC+CGG | 0.565507 | 6.1:+31310182 | None:intergenic |
| AGCATTGAGCCATGTAACTT+CGG | 0.566469 | 6.1:+31302495 | None:intergenic |
| ATTGGAGAAGCTCAAACGAA+TGG | 0.567266 | 6.1:-31302425 | MS.gene83960:CDS |
| TTCTGATATAGGATCGGAGT+TGG | 0.568382 | 6.1:-31307909 | MS.gene83960:CDS |
| GGCATCATTGATACCATTGG+AGG | 0.569021 | 6.1:+31307868 | None:intergenic |
| CGACGTGTGCATAAATCACC+AGG | 0.569114 | 6.1:+31305425 | None:intergenic |
| GCAGAAACTACTGATGGAGC+AGG | 0.569460 | 6.1:+31307233 | None:intergenic |
| CGGCACTATGCTGTAACTCG+TGG | 0.570982 | 6.1:+31302248 | None:intergenic |
| TCGTGAATATGCTCGCTGGT+TGG | 0.572821 | 6.1:-31305405 | MS.gene83960:CDS |
| CCTTGAATGTTATCGGACTC+AGG | 0.575875 | 6.1:+31307953 | None:intergenic |
| AAGGTCAGATAGATACATCC+CGG | 0.576945 | 6.1:-31307988 | MS.gene83960:CDS |
| CAGAAGCATCTCCAGTAGCA+AGG | 0.578725 | 6.1:+31304216 | None:intergenic |
| GGCACTATGCTGTAACTCGT+GGG | 0.579849 | 6.1:+31302249 | None:intergenic |
| CTCAGGAGATGAATAATCCC+GGG | 0.581010 | 6.1:+31307970 | None:intergenic |
| AAGGTGATGGGTTATCGGGT+TGG | 0.582273 | 6.1:-31310152 | MS.gene83960:CDS |
| AGCCGCACGTTCTTTCTCCA+AGG | 0.583452 | 6.1:+31303968 | None:intergenic |
| AGTAAATGCTGAGAACAAGT+TGG | 0.583946 | 6.1:-31308032 | MS.gene83960:CDS |
| TCCAGTAGCAAGGGCAATAG+CGG | 0.586351 | 6.1:+31304226 | None:intergenic |
| TGATTCCCAGAAGAAGAAGA+AGG | 0.587923 | 6.1:-31310100 | MS.gene83960:CDS |
| AGTAGCTGATCTTTCTTCTG+GGG | 0.590948 | 6.1:-31304484 | MS.gene83960:CDS |
| TTGAACAGATATATATTCAG+TGG | 0.591238 | 6.1:+31307847 | None:intergenic |
| TTGCTCCGTGCATAACGCCA+AGG | 0.591537 | 6.1:-31310205 | MS.gene83960:CDS |
| ATTGTTTGGAATCAGGACTT+GGG | 0.596942 | 6.1:-31302638 | MS.gene83960:intron |
| ATCAGCACCTAAACCAGATG+AGG | 0.597185 | 6.1:+31307544 | None:intergenic |
| AATTGACAAGATCATCCTCA+TGG | 0.597415 | 6.1:-31302371 | MS.gene83960:CDS |
| GTCTGACGTGATGAGAAAGA+GGG | 0.599108 | 6.1:+31310265 | None:intergenic |
| AGTAGCATTATCTATGTACA+TGG | 0.600902 | 6.1:+31305215 | None:intergenic |
| AGAAGCATCTCCAGTAGCAA+GGG | 0.602025 | 6.1:+31304217 | None:intergenic |
| TGTCTATAAAACCAGAAAGT+CGG | 0.602692 | 6.1:+31304541 | None:intergenic |
| CGGCTGAAGCCTCCTTGCGG+AGG | 0.602998 | 6.1:+31302515 | None:intergenic |
| TGGGTCGGGTCTGATTCTAA+AGG | 0.603756 | 6.1:-31310171 | MS.gene83960:CDS |
| TGAACGAAAAGCCTTGTCCA+TGG | 0.606463 | 6.1:-31303769 | MS.gene83960:CDS |
| GTTGGTCCGATTCAGCAACT+GGG | 0.606734 | 6.1:-31310134 | MS.gene83960:CDS |
| TGGAGAAGCTGCCATCTCAA+AGG | 0.608787 | 6.1:-31302284 | MS.gene83960:CDS |
| TGCACGGAGCAAAGAAGTGG+TGG | 0.608863 | 6.1:+31310216 | None:intergenic |
| TGATGATTCTGATATAGGAT+CGG | 0.610207 | 6.1:-31307915 | MS.gene83960:CDS |
| AAGAGAAGTTGGTGAACATG+TGG | 0.611282 | 6.1:+31310320 | None:intergenic |
| GCCTTTGACAACACATCAGG+AGG | 0.619924 | 6.1:-31308089 | MS.gene83960:CDS |
| GGTCTGATTCTAAAGGTGAT+GGG | 0.621913 | 6.1:-31310164 | MS.gene83960:CDS |
| AAAGCTGCAGAAACTACTGA+TGG | 0.625334 | 6.1:+31307227 | None:intergenic |
| GGCTATTGAATCAGAAATGG+AGG | 0.628296 | 6.1:-31303949 | MS.gene83960:CDS |
| AGTTACATGGCTCAATGCTG+GGG | 0.628725 | 6.1:-31302491 | MS.gene83960:CDS |
| AGAGAAGTTGGTGAACATGT+GGG | 0.631272 | 6.1:+31310321 | None:intergenic |
| ATATAAATTGGGAAACCATG+AGG | 0.631489 | 6.1:+31302356 | None:intergenic |
| AGGTCAGATAGATACATCCC+GGG | 0.632359 | 6.1:-31307987 | MS.gene83960:CDS |
| CACGTCGTGAATATGCTCGC+TGG | 0.643178 | 6.1:-31305409 | MS.gene83960:CDS |
| ATTGAGCCTGATGTTCAACC+TGG | 0.648300 | 6.1:-31305443 | MS.gene83960:CDS |
| AAAGATCAGCTACTAGTGCA+GGG | 0.652793 | 6.1:+31304493 | None:intergenic |
| TTATGCACGGAGCAAAGAAG+TGG | 0.654806 | 6.1:+31310213 | None:intergenic |
| CTTCGGCTGAAGCCTCCTTG+CGG | 0.664983 | 6.1:+31302512 | None:intergenic |
| ACCAAGAACATACCTTTCAG+GGG | 0.665184 | 6.1:+31304962 | None:intergenic |
| TCTGACGTGATGAGAAAGAG+GGG | 0.665582 | 6.1:+31310266 | None:intergenic |
| GACTGAAACTGTTAGTACTG+TGG | 0.666312 | 6.1:-31307516 | MS.gene83960:CDS |
| TGCCTTGGAGAAAGAACGTG+CGG | 0.673296 | 6.1:-31303970 | MS.gene83960:CDS |
| GGAGAGACACGGAATCAAAG+TGG | 0.674644 | 6.1:-31302551 | MS.gene83960:CDS |
| ACAAGCAAGAGCATTAGAGG+AGG | 0.676263 | 6.1:-31302587 | MS.gene83960:CDS |
| AGAGATCGTTGGGAGAGACA+CGG | 0.678075 | 6.1:-31302562 | MS.gene83960:CDS |
| GGGAGCAGTACTCAACTCAA+GGG | 0.682992 | 6.1:-31302471 | MS.gene83960:CDS |
| ACAAAGTCTAATGAGTAACA+AGG | 0.685125 | 6.1:-31303889 | MS.gene83960:CDS |
| AAAGAAGTGGTGGAAGACGA+GGG | 0.686934 | 6.1:+31310226 | None:intergenic |
| GAGACACGGAATCAAAGTGG+TGG | 0.696553 | 6.1:-31302548 | MS.gene83960:CDS |
| GGTTGACGAAGACCTCCGCA+AGG | 0.709010 | 6.1:-31302527 | MS.gene83960:CDS |
| CTGACGTGATGAGAAAGAGG+GGG | 0.713118 | 6.1:+31310267 | None:intergenic |
| ATTTGATGACATCACCCCTG+AGG | 0.716657 | 6.1:-31305184 | MS.gene83960:CDS |
| GGAATCAAAACCTTTCCTGG+AGG | 0.723513 | 6.1:+31307197 | None:intergenic |
| TGACGAAGACCTCCGCAAGG+AGG | 0.731713 | 6.1:-31302524 | MS.gene83960:CDS |
| GAAGTGGTGGAAGACGAGGG+TGG | 0.757929 | 6.1:+31310229 | None:intergenic |
| CGAATGGGTGCAGATCTCAG+AGG | 0.766959 | 6.1:-31302409 | MS.gene83960:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.1 | gene | 31302141 | 31310358 | 31302141 | ID=MS.gene83960 |
| chr6.1 | mRNA | 31302141 | 31310358 | 31302141 | ID=MS.gene83960.t1;Parent=MS.gene83960 |
| chr6.1 | exon | 31310088 | 31310358 | 31310088 | ID=MS.gene83960.t1.exon1;Parent=MS.gene83960.t1 |
| chr6.1 | CDS | 31310088 | 31310358 | 31310088 | ID=cds.MS.gene83960.t1;Parent=MS.gene83960.t1 |
| chr6.1 | exon | 31308250 | 31308336 | 31308250 | ID=MS.gene83960.t1.exon2;Parent=MS.gene83960.t1 |
| chr6.1 | CDS | 31308250 | 31308336 | 31308250 | ID=cds.MS.gene83960.t1;Parent=MS.gene83960.t1 |
| chr6.1 | exon | 31307142 | 31308130 | 31307142 | ID=MS.gene83960.t1.exon3;Parent=MS.gene83960.t1 |
| chr6.1 | CDS | 31307142 | 31308130 | 31307142 | ID=cds.MS.gene83960.t1;Parent=MS.gene83960.t1 |
| chr6.1 | exon | 31305380 | 31305468 | 31305380 | ID=MS.gene83960.t1.exon4;Parent=MS.gene83960.t1 |
| chr6.1 | CDS | 31305380 | 31305468 | 31305380 | ID=cds.MS.gene83960.t1;Parent=MS.gene83960.t1 |
| chr6.1 | exon | 31305160 | 31305263 | 31305160 | ID=MS.gene83960.t1.exon5;Parent=MS.gene83960.t1 |
| chr6.1 | CDS | 31305160 | 31305263 | 31305160 | ID=cds.MS.gene83960.t1;Parent=MS.gene83960.t1 |
| chr6.1 | exon | 31304975 | 31305074 | 31304975 | ID=MS.gene83960.t1.exon6;Parent=MS.gene83960.t1 |
| chr6.1 | CDS | 31304975 | 31305074 | 31304975 | ID=cds.MS.gene83960.t1;Parent=MS.gene83960.t1 |
| chr6.1 | exon | 31304668 | 31304743 | 31304668 | ID=MS.gene83960.t1.exon7;Parent=MS.gene83960.t1 |
| chr6.1 | CDS | 31304668 | 31304743 | 31304668 | ID=cds.MS.gene83960.t1;Parent=MS.gene83960.t1 |
| chr6.1 | exon | 31304457 | 31304571 | 31304457 | ID=MS.gene83960.t1.exon8;Parent=MS.gene83960.t1 |
| chr6.1 | CDS | 31304457 | 31304571 | 31304457 | ID=cds.MS.gene83960.t1;Parent=MS.gene83960.t1 |
| chr6.1 | exon | 31303765 | 31304296 | 31303765 | ID=MS.gene83960.t1.exon9;Parent=MS.gene83960.t1 |
| chr6.1 | CDS | 31303765 | 31304296 | 31303765 | ID=cds.MS.gene83960.t1;Parent=MS.gene83960.t1 |
| chr6.1 | exon | 31302141 | 31302645 | 31302141 | ID=MS.gene83960.t1.exon10;Parent=MS.gene83960.t1 |
| chr6.1 | CDS | 31302141 | 31302645 | 31302141 | ID=cds.MS.gene83960.t1;Parent=MS.gene83960.t1 |
| Gene Sequence |
| Protein sequence |
